Query 022427
Match_columns 297
No_of_seqs 261 out of 1474
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:19:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kio_A Ribonuclease H2 subunit 100.0 1.7E-82 5.7E-87 595.9 22.7 282 4-297 17-301 (301)
2 1eke_A Ribonuclease HII; endon 100.0 1.7E-62 5.8E-67 446.2 19.4 206 15-231 2-219 (230)
3 1i39_A Ribonuclease HII, RNAse 100.0 4.2E-62 1.4E-66 442.1 19.5 203 10-232 15-219 (225)
4 1io2_A Ribonuclease HII; endon 100.0 1.4E-61 4.7E-66 435.7 18.2 203 15-232 2-206 (213)
5 1uax_A Ribonuclease HII, ribon 100.0 1.7E-60 5.7E-65 430.6 17.3 204 15-233 2-207 (220)
6 2etj_A Ribonuclease HII, RNAse 100.0 2.3E-57 8E-62 414.9 12.6 199 10-245 19-218 (250)
7 2d0b_A RNAse HIII, ribonucleas 100.0 1E-53 3.5E-58 403.6 17.9 210 14-232 91-304 (310)
8 3vn5_A RNAse HIII, ribonucleas 100.0 5.9E-48 2E-52 355.5 17.2 182 18-225 75-256 (257)
9 2f8e_A VPG protein; RNA-depend 51.9 3.8 0.00013 24.1 0.4 7 25-31 1-7 (26)
10 1d3y_A DNA topoisomerase VI A 42.2 9 0.00031 35.2 1.6 18 192-210 152-169 (301)
11 2q2e_A Type II DNA topoisomera 28.9 27 0.00094 32.9 2.6 18 192-210 225-242 (369)
12 2kih_A Matrix protein 2; S31N, 27.1 22 0.00074 23.2 1.0 15 154-168 3-17 (43)
13 1jr5_A 10 kDa anti-sigma facto 23.5 19 0.00063 27.6 0.2 20 159-178 10-29 (90)
14 2zbk_A Type II DNA topoisomera 22.4 28 0.00095 33.2 1.3 18 192-210 232-249 (389)
15 2ljb_A M2 protein, BM2 protein 22.0 34 0.0011 21.5 1.1 15 154-168 3-17 (35)
No 1
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A
Probab=100.00 E-value=1.7e-82 Score=595.88 Aligned_cols=282 Identities=46% Similarity=0.851 Sum_probs=222.6
Q ss_pred CCCCCCcCCC-CceeeecccCCCCcccceeEEEEEecccccchhcccCCCCCCCCCHHHHHHHHHHhhhc-CcccEEEEE
Q 022427 4 EAALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDI 81 (297)
Q Consensus 4 ~~~~~~~~~~-~~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~lgv~DSK~Ls~~kRe~L~~~I~~~-~~~~~~v~~ 81 (297)
.|++|++|.+ ++++|||||||||++||||+|||++|.+....|..+||+|||+||+++|++||++|++. .+++|+|.+
T Consensus 17 ~s~~p~~~~~~~~v~GvDEaGRGplaGPvV~aavil~~~~~~~l~~~gl~DSKkLs~~kRe~L~~~I~~~~~a~~~~v~~ 96 (301)
T 3kio_A 17 SSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDV 96 (301)
T ss_dssp ECCCCTHHHHSCEEEEEEEECSSCSBSCEEEEEEEEEGGGGGGCCCCCSCC--CCCHHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred eCCCchhhcCCceEEeeeCCCCCCccccceEEEEEEchhhhhhHhhcCCCccccCCHHHHHHHHHHHHhhcccceEEEEe
Confidence 4799999988 99999999999999999999999999987777888999999999999999999999873 368999999
Q ss_pred EChhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHHccCCCcceEEECCCCChHHHHHHhhccCCCcceEEeecCccccchh
Q 022427 82 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVV 161 (297)
Q Consensus 82 isp~eId~~m~~~~~~NLN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g~~~~y~~~L~~~~p~~~~~~~~KaDs~~~~V 161 (297)
++|++||+.|+++..+|||.++|++++.++++++++++.++.||||+++.|++|+++|+..+|++++++++|||++|++|
T Consensus 97 ~s~~eId~~m~~~~~~nlN~l~~~~~~~~i~~~~~l~~~p~~vlVD~~~~p~~y~~~L~~~~p~~~~~~~~KgDs~~~sV 176 (301)
T 3kio_A 97 LSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVV 176 (301)
T ss_dssp ECHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSSCCHHHHHHHHHSSTTSEEEEETTGGGTSHHH
T ss_pred cCHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCChHHHHHHHhhcCCCCceEEEeccchhhhHH
Confidence 99999999998878899999999999999999998889999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhHhhcccccCCCCCccCCCCHHHHHHHHhcccccCCCCccccccchhHHHhh-cccceEEec
Q 022427 162 SGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 240 (297)
Q Consensus 162 AAASIiAKV~RD~~m~~~~~~~~~~~~~~~~GsGYpsDp~T~~~L~~~~~~~~G~~~~~R~Sw~t~~~~l-~~~~~~~~~ 240 (297)
|||||||||+||++|++|++.+.......+|||||||||+|++||+++++++||+|++||+||+|+++++ +++++|.|+
T Consensus 177 AAASIlAKV~RD~~M~~~~f~e~l~~~~~~~GsGYPSDp~T~~~L~~~~~~~~G~p~~vR~SW~tvk~~l~~~~~~v~w~ 256 (301)
T 3kio_A 177 SAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWE 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSSSTTSHHHHHHHHTTCBTTTBSCTTBCTTSHHHHHHHHHHSCCEECS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhhCCCCCCcCCCCHHHHHHHHHcccccCCCCccccCCcHHHHHHHhcCCceeeec
Confidence 9999999999999999998777655566789999999999999999999999999999999999999999 589999999
Q ss_pred cCcccccccccccccccceecccccCcccCcchhhhccCccccchhhhcccccccCC
Q 022427 241 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 297 (297)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~r~l~~~~~~ 297 (297)
+|+++++..+ ..+|++| |..... ...+++||+||++|+|++|+++
T Consensus 257 ~~~~~~~~~~------~~~~~~~-f~~~~~-----~~~~~~~~~~f~~~~l~~~~~~ 301 (301)
T 3kio_A 257 DSEAEEDPER------PGKITSY-FSQGPQ-----TCRPQAPHRYFQERGLEAASSL 301 (301)
T ss_dssp CC-------------------------------------------------------
T ss_pred cccccccccc------chhHHHH-hcCCCc-----cccccccchhhHhhcccccccC
Confidence 8875433211 1388887 221111 1114789999999999999874
No 2
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=100.00 E-value=1.7e-62 Score=446.24 Aligned_cols=206 Identities=34% Similarity=0.513 Sum_probs=182.7
Q ss_pred ceeeecccCCCCcccceeEEEEEecccccchhcccCCCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhhhh
Q 022427 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK 94 (297)
Q Consensus 15 ~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~lgv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~m~~~ 94 (297)
.++|||||||||++||||+|||++|.+....|..+||+|||+||+++|++||++|++. + .|++.+++|++||+.|.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gv~DSK~Ls~~~Re~L~~~I~~~-~-~~~v~~~~~~eId~~~~-- 77 (230)
T 1eke_A 2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENL-G-YVEKRILEAEEINQLMN-- 77 (230)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHTTTCC---CCCHHHHHHHHHHHHHH-S-EEEEEEECHHHHHHHTT--
T ss_pred CEecccCCCCCCchhhheEEEEEEchhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-C-CEEEEEeCHHHHhcccc--
Confidence 4799999999999999999999999987777888999999999999999999999986 4 89999999999999885
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcc---CCCcceEEECCCC-ChHHHHHHhhccC--------CCcceEEeecCccccchhh
Q 022427 95 NKINLNEISHDSAIGLITRVLNI---GILLTEVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVS 162 (297)
Q Consensus 95 ~~~NLN~l~~~~~~~li~~~l~~---~~~~~~v~VD~~g-~~~~y~~~L~~~~--------p~~~~~~~~KaDs~~~~VA 162 (297)
.+|||++++.+|.++|+.+... +++++.|+||+++ ++++|+++|.+.+ |.+++++++|||++|++||
T Consensus 78 -~~Ni~~a~~~a~~~ai~~l~~~~~~~~~~~~vliD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~KgD~~~~~VA 156 (230)
T 1eke_A 78 -SINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVS 156 (230)
T ss_dssp -TSCHHHHHHHHHHHHHHHHHHHTTCCSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGTCHHHH
T ss_pred -ccCHHHHHHHHHHHHHHHHhhhhccCCCCCEEEECCCCCChHHHHHHHhhhhcccccccCCCCceEEEECcccccHHHH
Confidence 6799999999999999988754 5668899999998 7888988887544 4477889999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhHhhcccccCCCCCccCCCCHHHHHHHHhcccccCCCCccccccchhHHHhh
Q 022427 163 GASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 231 (297)
Q Consensus 163 AASIiAKV~RD~~m~~~~~~~~~~~~~~~~GsGYpsDp~T~~~L~~~~~~~~G~~~~~R~Sw~t~~~~l 231 (297)
||||||||+||++|.+|+..|+ +||+|||+||.|++||++++++.+++|++||+||+|+++++
T Consensus 157 AASIlAKv~RD~~m~~l~~~yp------~~gkGY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l 219 (230)
T 1eke_A 157 AASIIAKAERDEIIDYYKKIYG------DIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRIL 219 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS------CCTTSSTTSHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC------CCCCcCCchHHHHHHHHHHHHHhCCCCHHHcCCCHhHHHHH
Confidence 9999999999999999988775 57799999999999999877666559999999999999988
No 3
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D*
Probab=100.00 E-value=4.2e-62 Score=442.12 Aligned_cols=203 Identities=33% Similarity=0.479 Sum_probs=179.9
Q ss_pred cCCC-CceeeecccCCCCcccceeEEEEEecccccchhcccCCCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHh
Q 022427 10 WASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS 88 (297)
Q Consensus 10 ~~~~-~~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~lgv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId 88 (297)
++.+ .+++|||||||||++||||+|||++|.+. .|..+||+|||+||+++|++||++|++. +. |+|.+++|++||
T Consensus 15 ~~~g~~~i~GvDEaGRGplaGPvV~aavil~~~~--~l~~~gv~DSKkLs~~kRe~L~~~I~~~-a~-~~v~~~s~~eID 90 (225)
T 1i39_A 15 VPRGSHMKAGIDEAGKGCVIGPLVVAGVACSDED--RLRKLGVKDSKKLSQGRREELAEEIRKI-CR-TEVLKVSPENLD 90 (225)
T ss_dssp ------CEEEEEEECTTCSBSCEEEEEEEESCHH--HHHHTTCTTCTTCCHHHHHHHHHHHHHH-EE-EEEEEECHHHHH
T ss_pred ccCCCeEEEEecCCCCcCchhhhEEEEEEEcchh--hcccCCCCcCCcCCHHHHHHHHHHHHHh-CC-EEEEEECHHHHh
Confidence 4556 78999999999999999999999999864 5667899999999999999999999985 45 999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHccCCCcceEEECCCC-ChHHHHHHhhccCCCcceEEeecCccccchhhhhHHH
Q 022427 89 AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIV 167 (297)
Q Consensus 89 ~~m~~~~~~NLN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g-~~~~y~~~L~~~~p~~~~~~~~KaDs~~~~VAAASIi 167 (297)
+.|. .+|||++++.+|.++|+.+. ++.|+||+++ ++++|+++|++.++ +++++++|||++|++|||||||
T Consensus 91 ~~~~---~~Ni~~a~~~am~~ai~~l~-----~~~vlvD~~~~~~~~~~~~l~~~~~-~~~~~~~KgD~~~~~VAAASIl 161 (225)
T 1i39_A 91 ERMA---AKTINEILKECYAEIILRLK-----PEIAYVDSPDVIPERLSRELEEITG-LRVVAEHKADEKYPLVAAASII 161 (225)
T ss_dssp HHTT---TSCHHHHHHHHHHHHHHHHC-----CSEEEEEESSSCCHHHHHHHHHHHC-SEEEEEETGGGTCHHHHHHHHH
T ss_pred hhcc---cccHHHHHHHHHHHHHHhCC-----CCEEEECCCCCChHHHHHHhhhcCC-CceEEEecccccchHHHHHHHH
Confidence 9873 67999999999998888753 4789999998 78889988876555 7888999999999999999999
Q ss_pred HHHHHHHHHHHhhHhhcccccCCCCCccCCCCHHHHHHHHhcccccCCCCccccccchhHHHhhc
Q 022427 168 AKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 232 (297)
Q Consensus 168 AKV~RD~~m~~~~~~~~~~~~~~~~GsGYpsDp~T~~~L~~~~~~~~G~~~~~R~Sw~t~~~~l~ 232 (297)
|||+||++|++|+..+| +||+|||+||.|++||++++++ +|+|++||+||+|++++++
T Consensus 162 AKv~RD~~m~~l~~~yp------~~gkGY~tD~~t~~hl~~~i~~-~g~~~~hR~Sf~~~~~~l~ 219 (225)
T 1i39_A 162 AKVEREREIERLKEKFG------DFGSGYASDPRTREVLKEWIAS-GRIPSCVRMRWKTVSNLRQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHC------CCCSSSTTSHHHHHHHHHHHHH-TCCCTTBCTTSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCC------CCCCcCCChHHHHHHHHHhhhh-cCCCHHHcCCCHHHHHHHh
Confidence 99999999999998876 4679999999999999998877 8999999999999999886
No 4
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=100.00 E-value=1.4e-61 Score=435.74 Aligned_cols=203 Identities=34% Similarity=0.540 Sum_probs=181.4
Q ss_pred ceeeecccCCCCcccceeEEEEEecccccchhcccCCCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhhhh
Q 022427 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK 94 (297)
Q Consensus 15 ~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~lgv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~m~~~ 94 (297)
.++|||||||||++||||+|||++|.+....|..+||+|||+||+++|++||++|++. +++|+|.+++|++||+.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gv~DSK~Ls~~~Re~L~~~I~~~-a~~~~v~~~~~~eId~~---- 76 (213)
T 1io2_A 2 KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGV-LDDYVILELPPDVIGSR---- 76 (213)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHTTGGGCTTCCHHHHHHHHHHHHTT-CSEEEEEEECHHHHHTC----
T ss_pred CEeccCCCCCCCccchheEEEEEEChhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-CceEEEEEECHHHHcch----
Confidence 4799999999999999999999999987777888999999999999999999999985 57899999999999753
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccCCCcceEEECCCC-ChHHHHHHhhccCC-CcceEEeecCccccchhhhhHHHHHHHH
Q 022427 95 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTR 172 (297)
Q Consensus 95 ~~~NLN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g-~~~~y~~~L~~~~p-~~~~~~~~KaDs~~~~VAAASIiAKV~R 172 (297)
.+|||++++.+|.++|+.+. ..++.|+||+++ ++++|+++|+..++ .+++++++|||++|++||||||||||+|
T Consensus 77 -~~Ni~~a~~~a~~~ai~~l~---~~p~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~R 152 (213)
T 1io2_A 77 -EGTLNEFEVENFAKALNSLK---VKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTR 152 (213)
T ss_dssp -SSCHHHHHHHHHHHHHHHCS---SCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHhcc---ccCCEEEECCCCCCHHHHHHHHhhccCCCCceEEEeCcccccHHHHHHHHHHHHHH
Confidence 25999999999988887643 346799999998 78889999987764 5788999999999999999999999999
Q ss_pred HHHHHHhhHhhcccccCCCCCccCCCCHHHHHHHHhcccccCCCCccccccchhHHHhhc
Q 022427 173 DRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 232 (297)
Q Consensus 173 D~~m~~~~~~~~~~~~~~~~GsGYpsDp~T~~~L~~~~~~~~G~~~~~R~Sw~t~~~~l~ 232 (297)
|++|.+|+..|+ +||+|||+||.|++||++++++.+++|++||+||+|++++++
T Consensus 153 D~~m~~l~~~y~------~~g~GY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l~ 206 (213)
T 1io2_A 153 DRAVEKLKEEYG------EIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIAE 206 (213)
T ss_dssp HHHHHHHHHHHS------CCCSSCTTSHHHHHHHHHHHHHHSSCCTTBCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCCCcCCchHHHHHHHHHHHHHhCCCChhhhCCCHhHHHHHH
Confidence 999999998876 467999999999999997776665599999999999999874
No 5
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1
Probab=100.00 E-value=1.7e-60 Score=430.56 Aligned_cols=204 Identities=32% Similarity=0.561 Sum_probs=180.5
Q ss_pred ceeeecccCCCCcccceeEEEEEecccccchhcccCCCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhhhh
Q 022427 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK 94 (297)
Q Consensus 15 ~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~lgv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~m~~~ 94 (297)
.++|||||||||++||||+|||++|.+....|..+||+|||+||+++|++||++|++. +++|+|.+++|++||+.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gl~DSK~Ls~~~Re~L~~~I~~~-a~~~~v~~~~~~eId~~---- 76 (220)
T 1uax_A 2 KVAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDI-LDDYYVLLVTPKEIDER---- 76 (220)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHHTGGGSTTSCHHHHHHHHHHHHHH-SSEEEEEEECHHHHHTC----
T ss_pred cEEeecCCCCCCchhhhEEEEEEEchhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-CceEEEEEECHHHHcCh----
Confidence 3799999999999999999999999887777788999999999999999999999986 57899999999999753
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccCCCcceEEECCCC-ChHHHHHHhhccCC-CcceEEeecCccccchhhhhHHHHHHHH
Q 022427 95 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTR 172 (297)
Q Consensus 95 ~~~NLN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g-~~~~y~~~L~~~~p-~~~~~~~~KaDs~~~~VAAASIiAKV~R 172 (297)
.+|||++++.+|.++|+.+ ...++.|+||+++ ++++|+++|+..++ .+++++++|||++|++||||||||||+|
T Consensus 77 -~~Ni~~a~~~am~~ai~~l---~~~~~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~R 152 (220)
T 1uax_A 77 -HHSMNELEAEKFVVALNSL---RIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTR 152 (220)
T ss_dssp -SSCHHHHHHHHHHHHHHTC---SSCCSEEEEECTTSCHHHHHHHHHHHCSSCCEEEEETTHHHHCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHhc---CCCCCEEEECCCCCChHHHHHHhhhccCCCCceEEEeccchhhHHHHHHHHHHHHHH
Confidence 2599999999988777653 3456789999998 78899999987664 5788899999999999999999999999
Q ss_pred HHHHHHhhHhhcccccCCCCCccCCCCHHHHHHHHhcccccCCCCccccccchhHHHhhcc
Q 022427 173 DRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 233 (297)
Q Consensus 173 D~~m~~~~~~~~~~~~~~~~GsGYpsDp~T~~~L~~~~~~~~G~~~~~R~Sw~t~~~~l~~ 233 (297)
|++|.+|+..|+ +||+|||+||.|++||++++++.+++|++||+||+|+++++++
T Consensus 153 D~~m~~l~~~yp------~~gkGY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l~~ 207 (220)
T 1uax_A 153 DREIEKLKQKYG------EFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKIEER 207 (220)
T ss_dssp HHHHHHHHHHHC------CCTTSCTTCHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCCCcCCchHHHHHHHHHHHHHhCCCChhhcCCChhHHHHHHH
Confidence 999999998876 4679999999999999977765555999999999999998853
No 6
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structur genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} SCOP: c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Probab=100.00 E-value=2.3e-57 Score=414.88 Aligned_cols=199 Identities=24% Similarity=0.306 Sum_probs=163.1
Q ss_pred cCCC-CceeeecccCCCCcccceeEEEEEecccccchhcccCCCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHh
Q 022427 10 WASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS 88 (297)
Q Consensus 10 ~~~~-~~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~lgv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId 88 (297)
|..+ .+++|||||||||++||||+|||++|.+ .+||+|||+||+++|++||++|++. +++ +|.+++|++||
T Consensus 19 ~~~g~~~i~GvDEAGRGplaGPvV~AAVil~~~------~~Gl~DSKkLs~~kRe~L~~~I~~~-a~~-~v~~~sp~eID 90 (250)
T 2etj_A 19 YKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE------IEGINDSKQLSPAKRERLLDEIMEK-AAV-GIGIASPEEID 90 (250)
T ss_dssp GTTTSSSEEEEEEECTTCSBSCEEEEEEEECSC------CC----------CHHHHHHHHHHHH-EEE-EEEEECHHHHH
T ss_pred HhCCCceEEEecCCCCCCchhhheEEEEEEcCC------ccCCCccccCCHHHHHHHHHHHHHh-hCC-eEEEECHHHHC
Confidence 4556 7899999999999999999999999985 4899999999999999999999985 466 99999999996
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHccCCCcceEEECCCCChHHHHHHhhccCCCcceEEeecCccccchhhhhHHHH
Q 022427 89 AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 168 (297)
Q Consensus 89 ~~m~~~~~~NLN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g~~~~y~~~L~~~~p~~~~~~~~KaDs~~~~VAAASIiA 168 (297)
++|||+++..+|.+++ .+++++++.|+||+++.| + +++.++++|||++|++||||||||
T Consensus 91 -------~~NI~~at~~Am~rAi---~~L~~~p~~vlVDg~~~~--l---------~~~~~~ivKgD~~~~sVAAASIlA 149 (250)
T 2etj_A 91 -------LYNIFNATKLAMNRAL---ENLSVKPSFVLVDGKGIE--L---------SVPGTCLVKGDQKSKLIGAASIVA 149 (250)
T ss_dssp -------HHCHHHHHHHHHHHHH---HHSSSCCSEEEEESSSCC--C---------SSCEEEETTHHHHCHHHHHHHHHH
T ss_pred -------HHhHHHHHHHHHHHHH---HhcCCCCCEEEECCCCCC--C---------CCceEEEecccccchhHHHHHHHH
Confidence 4699999887775444 345677899999999765 1 144667899999999999999999
Q ss_pred HHHHHHHHHHhhHhhcccccCCCCCccCCCCHHHHHHHHhcccccCCCCccccccchhHHHhhcccceEEeccCccc
Q 022427 169 KVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMD 245 (297)
Q Consensus 169 KV~RD~~m~~~~~~~~~~~~~~~~GsGYpsDp~T~~~L~~~~~~~~G~~~~~R~Sw~t~~~~l~~~~~~~~~~~~~~ 245 (297)
||+||++|++|+..||.|+|..| +|||+ +.|++||+++ |++++||+||+|++++++..+.+.|.++++.
T Consensus 150 KV~RD~~M~~l~~~yp~Ygf~~~--kGY~T-~~h~~al~~~-----G~~~~HR~Sf~~v~~~l~~~~~~~w~~~~~~ 218 (250)
T 2etj_A 150 KVFRDRLMSEFHRMYPQFSFHKH--KGYAT-KEHLNEIRKN-----GVLPIHRLSFEPVLELLTDDLLREFFEKGLI 218 (250)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHH--TTCCC-HHHHHHHHHH-----CCCTTBCTTSHHHHTTCCHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCcccCCcCC--CcCCc-HHHHHHHHHc-----CcCCeEECCcHHHHHHHhhccccccCCCccc
Confidence 99999999999999999998765 99998 8899999874 9999999999999999965588999877543
No 7
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=100.00 E-value=1e-53 Score=403.63 Aligned_cols=210 Identities=20% Similarity=0.236 Sum_probs=182.1
Q ss_pred CceeeecccCCCCcccceeEEEEEecccccchhcccCCCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhh-
Q 022427 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKML- 92 (297)
Q Consensus 14 ~~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~lgv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~m~- 92 (297)
.+++|||||||||++||||||||++|.+....|..+||+|||+||+++|++||+.|++. +.|+|.+++|++||+++.
T Consensus 91 ~~i~GvDEaGRGplaGPvV~aavil~~~~~~~l~~~gl~DSKkLs~~kRe~L~~~I~~~--~~~~v~~~s~~eId~l~a~ 168 (310)
T 2d0b_A 91 LSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMET--VPHAVTVLDNPQYNRWQRS 168 (310)
T ss_dssp SCEEEEEEECTTCSBSCEEEEEEEECGGGHHHHHHTCCTTGGGCCHHHHHHHHHHHHHH--SCEEEEEECHHHHHHHHHT
T ss_pred ceEEeecCCCCCCchhhhEEEEEEEchhhhhhhhhcCCCcCCcCCHHHHHHHHHHHHHh--cCeEEEEECHHHHhHHHhc
Confidence 57899999999999999999999999887666778999999999999999999999985 489999999999998743
Q ss_pred hhhhhhHHHHHHHHHH-HHHHHHHccCCCcceEEECCCCChHHHHHHhhc--cCCCcceEEeecCccccchhhhhHHHHH
Q 022427 93 NKNKINLNEISHDSAI-GLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAK 169 (297)
Q Consensus 93 ~~~~~NLN~l~~~~~~-~li~~~l~~~~~~~~v~VD~~g~~~~y~~~L~~--~~p~~~~~~~~KaDs~~~~VAAASIiAK 169 (297)
..+..||+.++|+.++ .+++. +. ++.++.|+||+++.|+.|+++|+. .++.+++++++|||++|++||||||||
T Consensus 169 ~i~~~~l~~~~~~~ai~~~i~~-L~-~~~p~~vliD~~~~~~~~~~~L~~~~~~~~~~~~~~~KgD~~~~~VAAASIlA- 245 (310)
T 2d0b_A 169 GMPQTKMKALLHNRTLVKLVDA-IA-PAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIA- 245 (310)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH-HT-TCCCSEEEEECSSCHHHHHHHTTTCSSCCCTTEEEETTGGGTCHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHh-cc-cCCCCEEEECCCCChHHHHHHHhhccccCCCceEEEeccccccHHHHHHHHHH-
Confidence 1234567777777665 33444 33 478899999999999999999974 456688899999999999999999999
Q ss_pred HHHHHHHHHhhHhhcccccCCCCCccCCCCHHHHHHHHhcccccCCCCccccccchhHHHhhc
Q 022427 170 VTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 232 (297)
Q Consensus 170 V~RD~~m~~~~~~~~~~~~~~~~GsGYpsDp~T~~~L~~~~~~~~G~~~~~R~Sw~t~~~~l~ 232 (297)
||++|++|+..+|.|+|..|+|+|||+|+.|++||++|... ++++++|+||+|++++++
T Consensus 246 --RD~~m~~l~~~~p~Yg~~~~kGygt~~h~~a~~~L~~~G~~--~l~~~~R~sf~t~~~~~~ 304 (310)
T 2d0b_A 246 --RYVFLEEMEQLSRAVGLLLPKGAGAIVDEAAARIIRARGEE--MLETCAKLHFANTKKALA 304 (310)
T ss_dssp --HHHHHHHHHHHHHHHTSCCCSSSSHHHHHHHHHHHHHHCGG--GHHHHBCTTSTHHHHHHH
T ss_pred --HHHHHHHHHHhCcccCCCCCcCCCCHHHHHHHHHHHHhCCC--ccchhheecCHhHHHHHH
Confidence 99999999999999999999999999999999999998533 455677899999999875
No 8
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=100.00 E-value=5.9e-48 Score=355.46 Aligned_cols=182 Identities=23% Similarity=0.259 Sum_probs=156.9
Q ss_pred eecccCCCCcccceeEEEEEecccccchhcccCCCCCCCCCHHHHHHHHHHhhhcCcccEEEEEEChhhHhHHhhhhhhh
Q 022427 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKI 97 (297)
Q Consensus 18 GiDEAGRGpv~GPmVvaav~~~~~~~~~L~~lgv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~m~~~~~~ 97 (297)
|||||||||++||||+|||++|.+....|+.+||+|||+||+++|++||++|++. +.|+|.+++|++||+.|. +.+
T Consensus 75 GvDEaGRGplaGPvv~aavil~~~~~~~L~~~gv~DSKkLs~~kRe~L~~~I~~~--~~~~v~~~s~~eID~~~~--~~~ 150 (257)
T 3vn5_A 75 GCDESGKGDIFGSLVLCCVCIPEENYLKVSSLNPRDTKRLSDKRVERLYLALKPL--VKAYCYEIKPEEYNKLYR--KFR 150 (257)
T ss_dssp EEEEESTTCSBSCEEEEEEECCGGGHHHHHHTCTTCCTTTCHHHHHHHHHHHGGG--SEEEEEEECHHHHHHHHH--HHS
T ss_pred CccCCCCCCcccccEEEEEEEchhhhhhHhhcCCCccccCCHHHHHHHHHHHHHh--cCEEEEEECHHHHhhhcc--ccc
Confidence 9999999999999999999999987777788999999999999999999999985 789999999999999874 457
Q ss_pred hHHHHHHHHHHHHHHHHHccCCCcceEEECCCCChHHHHHHhhccCCCcceEEeecCccccchhhhhHHHHHHHHHHHHH
Q 022427 98 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177 (297)
Q Consensus 98 NLN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g~~~~y~~~L~~~~p~~~~~~~~KaDs~~~~VAAASIiAKV~RD~~m~ 177 (297)
|||.++..+|.++|..+... ..++.|+||+++.+. | | + +++++++|||+ |++|||||||| ||++|+
T Consensus 151 Nin~~~~~am~~Ai~~L~~~-~~~~~vlvD~~~~~~-~---l----~-~~~~~~~KgD~-~~sVAAASIlA---Rd~~m~ 216 (257)
T 3vn5_A 151 NLNKMMTHFYKLLIERVKEE-CGVSEVVVDKYQPSN-P---F----G-EDVIFETEAER-NLAVAVASIFA---RYKFLQ 216 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HTCSCEEECCCSSSC-C---S----C-TTEEECBTTBC-CHHHHHHHHHH---HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcc-CCCCEEEECCCCCcc-c---C----C-CCeEEEEccch-hHHHHHHHHHH---HHHHHH
Confidence 99999998888888876542 125789999997643 1 2 1 46788999999 99999999999 999999
Q ss_pred HhhHhhcccccCCCCCccCCCCHHHHHHHHhcccccCCCCccccccch
Q 022427 178 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 225 (297)
Q Consensus 178 ~~~~~~~~~~~~~~~GsGYpsDp~T~~~L~~~~~~~~G~~~~~R~Sw~ 225 (297)
.|+..+|.|+|..| +||| |+.|++.. ..+|++++||.||.
T Consensus 217 ~l~~~~p~Ygf~~~--kGYg----T~~H~~Al--~~~G~~~~~rl~f~ 256 (257)
T 3vn5_A 217 SLKEVERELGIKIP--KGTS----KEVKELAK--SLKNPERFIKLNFN 256 (257)
T ss_dssp HHHHHHHHHCSCCC--CSCC----HHHHHHHH--TCSSGGGTBCGGGC
T ss_pred HHHHhCccCCCcCC--CCCC----cHHHHHHH--HHHCCCHHHHhccC
Confidence 99999999998765 9999 66666654 45799999999994
No 9
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=51.87 E-value=3.8 Score=24.06 Aligned_cols=7 Identities=57% Similarity=1.374 Sum_probs=5.5
Q ss_pred CCcccce
Q 022427 25 GPVLGPM 31 (297)
Q Consensus 25 Gpv~GPm 31 (297)
||++|||
T Consensus 1 gpyagpl 7 (26)
T 2f8e_A 1 GPYAGPL 7 (26)
T ss_pred CCcCCch
Confidence 7888876
No 10
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=42.21 E-value=9 Score=35.21 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=15.4
Q ss_pred CCccCCCCHHHHHHHHhcc
Q 022427 192 FGSGYPGDPETKAWLTDHK 210 (297)
Q Consensus 192 ~GsGYpsDp~T~~~L~~~~ 210 (297)
.|+||| |..|+.||+...
T Consensus 152 t~kGyP-d~aTR~fl~~L~ 169 (301)
T 1d3y_A 152 SLKGVP-ARATRRFIKRLH 169 (301)
T ss_dssp ECCSSC-CHHHHHHHHHHH
T ss_pred ECCCCC-CHHHHHHHHHHH
Confidence 479999 899999999753
No 11
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=28.92 E-value=27 Score=32.85 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.3
Q ss_pred CCccCCCCHHHHHHHHhcc
Q 022427 192 FGSGYPGDPETKAWLTDHK 210 (297)
Q Consensus 192 ~GsGYpsDp~T~~~L~~~~ 210 (297)
+|+||| |..|+.||+...
T Consensus 225 t~kG~P-d~atR~~L~~L~ 242 (369)
T 2q2e_A 225 HLKGQP-ARSTRRIIKRMN 242 (369)
T ss_dssp ECCSSC-CHHHHHHHHHHT
T ss_pred ECCCCC-CHHHHHHHHHHH
Confidence 589999 899999999643
No 12
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=27.15 E-value=22 Score=23.22 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=11.0
Q ss_pred CccccchhhhhHHHH
Q 022427 154 ADSLYPVVSGASIVA 168 (297)
Q Consensus 154 aDs~~~~VAAASIiA 168 (297)
.|+.-|.|.||||+-
T Consensus 3 ~dssdplv~aa~iiG 17 (43)
T 2kih_A 3 NDSSDPLVVAANIIG 17 (43)
T ss_dssp ---CCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH
Confidence 366779999999998
No 13
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=23.48 E-value=19 Score=27.59 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.8
Q ss_pred chhhhhHHHHHHHHHHHHHH
Q 022427 159 PVVSGASIVAKVTRDRTLRG 178 (297)
Q Consensus 159 ~~VAAASIiAKV~RD~~m~~ 178 (297)
-+||-|||+-|.-||.+++.
T Consensus 10 eIia~aSiLIKfg~ddIle~ 29 (90)
T 1jr5_A 10 EIITVASILIKFSREDIVEN 29 (90)
T ss_dssp HHHHHHHHHHHTTCHHHHTC
T ss_pred HHHHHHHHHHHcChHHHHHh
Confidence 47999999999999988876
No 14
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=22.36 E-value=28 Score=33.18 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=15.3
Q ss_pred CCccCCCCHHHHHHHHhcc
Q 022427 192 FGSGYPGDPETKAWLTDHK 210 (297)
Q Consensus 192 ~GsGYpsDp~T~~~L~~~~ 210 (297)
.|+||| |..|+.||+...
T Consensus 232 t~kG~P-d~aTR~fL~~L~ 249 (389)
T 2zbk_A 232 TSAGQP-DRATRRFVRRLN 249 (389)
T ss_dssp ECCSSC-CTTHHHHHHHHH
T ss_pred ECCCCC-CHHHHHHHHHHH
Confidence 479999 899999999753
No 15
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=21.99 E-value=34 Score=21.54 Aligned_cols=15 Identities=47% Similarity=0.583 Sum_probs=10.9
Q ss_pred CccccchhhhhHHHH
Q 022427 154 ADSLYPVVSGASIVA 168 (297)
Q Consensus 154 aDs~~~~VAAASIiA 168 (297)
.||.-|.|.||+|+-
T Consensus 3 ~dSsDplviaA~Iig 17 (35)
T 2ljb_A 3 NDSSDPLVVAASIIG 17 (35)
T ss_dssp ---CCTHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH
Confidence 366779999999997
Done!