Query 022428
Match_columns 297
No_of_seqs 208 out of 414
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:28:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10513 EPL1: Enhancer of pol 99.9 3.9E-27 8.5E-32 202.3 10.0 136 6-159 1-160 (160)
2 KOG2261 Polycomb enhancer prot 99.8 2.3E-21 5E-26 197.3 6.7 168 98-295 1-171 (716)
3 KOG2261 Polycomb enhancer prot 99.8 2.2E-21 4.9E-26 197.4 4.0 273 1-296 47-335 (716)
4 KOG0954 PHD finger protein [Ge 98.0 6.2E-06 1.3E-10 84.5 4.9 88 75-163 150-253 (893)
5 COG5141 PHD zinc finger-contai 96.0 0.0045 9.9E-08 61.5 2.7 43 120-162 129-173 (669)
6 KOG0954 PHD finger protein [Ge 95.8 0.012 2.6E-07 61.1 4.9 75 199-293 500-575 (893)
7 KOG0955 PHD finger protein BR1 95.2 0.047 1E-06 59.4 7.2 63 101-163 136-204 (1051)
8 KOG0955 PHD finger protein BR1 94.0 0.05 1.1E-06 59.2 3.9 76 204-296 472-554 (1051)
9 COG5141 PHD zinc finger-contai 73.0 9 0.00019 38.9 6.2 68 203-294 440-511 (669)
10 PF14954 LIX1: Limb expression 55.8 13 0.00027 34.0 3.3 41 199-239 21-62 (252)
11 COG2896 MoaA Molybdenum cofact 48.8 11 0.00023 36.4 1.9 54 100-158 4-57 (322)
12 PF07310 PAS_5: PAS domain; I 34.6 28 0.0006 28.8 2.0 26 200-225 4-29 (137)
13 PF06252 DUF1018: Protein of u 28.8 66 0.0014 26.0 3.2 34 126-159 1-37 (119)
14 cd04752 Commd4 COMM_Domain con 24.2 3E+02 0.0065 23.8 6.8 94 185-282 63-173 (174)
15 PF15066 CAGE1: Cancer-associa 23.6 1.4E+02 0.003 30.4 4.9 34 259-292 458-491 (527)
16 PF10176 DUF2370: Protein of u 22.1 66 0.0014 29.6 2.3 15 201-215 208-223 (233)
17 PF09862 DUF2089: Protein of u 21.8 2.2E+02 0.0048 23.3 5.0 15 125-139 33-47 (113)
18 PF07047 OPA3: Optic atrophy 3 21.4 4.6E+02 0.01 21.7 7.1 12 203-214 91-102 (134)
19 cd00677 S15_NS1_EPRS_RNA-bind 20.6 2.7E+02 0.0058 18.5 5.3 32 262-293 7-45 (46)
No 1
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.94 E-value=3.9e-27 Score=202.33 Aligned_cols=136 Identities=39% Similarity=0.648 Sum_probs=103.2
Q ss_pred cCCCCCCCCCCccccccCCCCCCCCCCCCCCCcccc--cCCCCCcccccccchhhcCCCCCCCC-----ccccccccC--
Q 022428 6 IRPRPLDIHKKLPIVKSFKDFEDDNNDTNPPTSSIA--ANSTPSATTTRNSHLLRLNSSSFDHD-----SQEVHQVPS-- 76 (297)
Q Consensus 6 fR~r~ld~~~~l~i~~~~~dl~~~~~~~~~~~~~~~--~~~~ps~~~~~~~~~~~~~~~~~~~E-----e~E~h~~~~-- 76 (297)
||+|+||+++|||||++ .|+++++... ..++.+ +..+++|+. +++ |.|+|++..
T Consensus 1 fR~~~ld~~~~l~I~~~-~d~~~~~~~~--~~~~~~~~~~~~~~gv~--------------~~~~~~~~e~e~~~q~~~~ 63 (160)
T PF10513_consen 1 FRPRRLDIKKPLPIFRE-EDLDDLDESE--DSSNKNQAVPQSPTGVE--------------KEEKLSKQEWEKHLQKPIS 63 (160)
T ss_pred CCCCCCCCCCCeeEEec-hhcccccccc--cccccccccccccCCcc--------------chhhccccccccccccccc
Confidence 99999999999999998 7777765421 111121 223333322 333 567777542
Q ss_pred ---------CCCCCCCCCccceecCCCccccCCCCCCCccceecccchhccC-CccccCCCHHHHHHHHHHhcC-----C
Q 022428 77 ---------KKSASEIPTPQFVVVDTYERDYSQTFDQPTSYLRARGARAELG-DFVEYDLDNEDEDWLDEFNRD-----Q 141 (297)
Q Consensus 77 ---------~~~~~~IP~P~~~~v~~y~~~y~~~F~~P~~YIr~~~~~~e~~-~~~~YdmDeeDe~wL~~~N~~-----~ 141 (297)
......||+|.++.++ |+..|...|..|.+||+|+....++. ..|+||||++|+.||+.+|++ .
T Consensus 64 ~~~~~~~~~~~~~~~IP~P~~~~~~-~~~~~~~~f~~p~~yi~~~~~~~e~~~~~veYDmDeeD~~wL~~~N~~r~~~~~ 142 (160)
T PF10513_consen 64 ASQNSKSKKKKEKKKIPTPSVRVVD-YEKPYSPPFKRPSSYIRFSEKSVEDLDEGVEYDMDEEDEEWLELLNKKRKSDGL 142 (160)
T ss_pred hhhhhhcccccccccCCCCceEEec-CcCCCCCcccCCccccccccCCHHHhccCcCCCCchHHHHHHHHHHHHhhhcCC
Confidence 1256789999999888 99999999999999999995333443 499999999999999999976 3
Q ss_pred CCCCHHHHHHHHHHHhcc
Q 022428 142 KLLPPEKFETLMFKLEVL 159 (297)
Q Consensus 142 ~~ise~~FE~imd~fEk~ 159 (297)
..||++.||.|||+|||.
T Consensus 143 ~~ls~~~FE~~md~lEke 160 (160)
T PF10513_consen 143 EPLSEEDFEIIMDRLEKE 160 (160)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 589999999999999983
No 2
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.84 E-value=2.3e-21 Score=197.32 Aligned_cols=168 Identities=30% Similarity=0.447 Sum_probs=140.4
Q ss_pred cCCCCCCCccceecccchhccCCccccCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccHHHhhhhccCCCCCCCC
Q 022428 98 YSQTFDQPTSYLRARGARAELGDFVEYDLDNEDEDWLDEFNRDQKLLPPEKFETLMFKLEVLDHKARERAGLITPTLGSP 177 (297)
Q Consensus 98 y~~~F~~P~~YIr~~~~~~e~~~~~~YdmDeeDe~wL~~~N~~~~~ise~~FE~imd~fEk~~~~~~er~~~~~P~~~~~ 177 (297)
|++.|+.|...|+..... .+.++++||||++|+.||.. ++.+.+..||.|+|++|+.+..
T Consensus 1 y~~~~k~~r~~~~~~~~~-l~~~~p~yd~D~~de~~~s~----~~~s~~~~~e~~~dR~e~~s~~--------------- 60 (716)
T KOG2261|consen 1 YPKAAKMPRQLIHGQPIW-LDREKPRYDHDSEDEDFLSV----QMESKPLKFERMRDRLEKCSSH--------------- 60 (716)
T ss_pred CCcccccchhhhcccccc-cCCCCCcccccchhHHHhhh----cccccchhHHHHhcccccCCcc---------------
Confidence 678899999999987655 56789999999999999997 6789999999999999997633
Q ss_pred CCcccCHHHHHHHhhhhccchhHHHHHHHHHHHHHHhhcCCC-cccccCC--CCCCCCCCCcccccccchhhhhhhhhhh
Q 022428 178 IPILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKRERWQKP-ILRRLQP--PPPVNDTNPYNVFRPREKAHRLHTRRMQ 254 (297)
Q Consensus 178 ~~~v~~~dea~~~l~~~~~~~~~~~~~VY~yWk~KR~r~g~p-Llr~l~~--~~~~~d~dPyv~FRrRe~~~~~ktRr~q 254 (297)
..+++.+++..|.+. ....-.||+||..||+..-.| |++.... .++...++||++||+|. ++|+||+
T Consensus 61 --~~i~l~edk~~l~~d----d~~~v~~~e~~veK~~~~e~~~L~p~v~~~~~~~~~s~~py~~~rr~t--ekmqtrk-- 130 (716)
T KOG2261|consen 61 --QKIYLEEDKKDLDED----DQRSVEVYEYWVEKREEKEVPSLIPPVKTEKRDGSASNKPYVAFRRRT--EKMQTRK-- 130 (716)
T ss_pred --ceecchhhhhccccc----cceeeeeeehhhhhhhhhccccccCccccccCCccccCCchhhhhhhh--hcccccc--
Confidence 245677777666542 444459999999999666555 8888873 35667889999999995 4677777
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 022428 255 RRENNVQSFEKLRQVRRNLDQAKSILEALIKRRKKERGHGG 295 (297)
Q Consensus 255 ~R~nd~~s~eKl~~Lr~dl~~ar~L~~~v~~RE~~Kr~~~~ 295 (297)
+|+||..|||||..||.+|.++.+++++++.||+.|++|++
T Consensus 131 n~~nd~aSyek~l~~~~dl~~a~t~~em~~~~e~tk~~L~~ 171 (716)
T KOG2261|consen 131 NRKNDEASYEKMLKLRRDLSRAYTILEMEKRREKTKRELLE 171 (716)
T ss_pred ccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHhhc
Confidence 78999999999999999999999999999999999999875
No 3
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.83 E-value=2.2e-21 Score=197.42 Aligned_cols=273 Identities=28% Similarity=0.411 Sum_probs=201.3
Q ss_pred CCCCccCCCCCCCCCCccccccCCCCCCCCCCCCCCCcccccCCCCCcccccccchhhcCCCCCCCCccccc-cccC---
Q 022428 1 MSRLSIRPRPLDIHKKLPIVKSFKDFEDDNNDTNPPTSSIAANSTPSATTTRNSHLLRLNSSSFDHDSQEVH-QVPS--- 76 (297)
Q Consensus 1 ms~~sfR~r~ld~~~~l~i~~~~~dl~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~Ee~E~h-~~~~--- 76 (297)
|++.++|..+++.++++++-.+..||.+++. +.....+.+ ++ |.++.|+| +.+.
T Consensus 47 ~e~~~dR~e~~s~~~~i~l~edk~~l~~dd~--------------------~~v~~~e~~-ve-K~~~~e~~~L~p~v~~ 104 (716)
T KOG2261|consen 47 FERMRDRLEKCSSHQKIYLEEDKKDLDEDDQ--------------------RSVEVYEYW-VE-KREEKEVPSLIPPVKT 104 (716)
T ss_pred HHHHhcccccCCccceecchhhhhccccccc--------------------eeeeeeehh-hh-hhhhhccccccCcccc
Confidence 5778889999999988888777666655332 111233444 44 88889999 4332
Q ss_pred -CCCCCCCCCccceecCCCccccCC--CCCCCccceecccchhccC-CccccCCCHHHHHHHHHHhcCCCCCCHHHHHHH
Q 022428 77 -KKSASEIPTPQFVVVDTYERDYSQ--TFDQPTSYLRARGARAELG-DFVEYDLDNEDEDWLDEFNRDQKLLPPEKFETL 152 (297)
Q Consensus 77 -~~~~~~IP~P~~~~v~~y~~~y~~--~F~~P~~YIr~~~~~~e~~-~~~~YdmDeeDe~wL~~~N~~~~~ise~~FE~i 152 (297)
+.....+++|-+..+..+++.+.. .+..+.+|-++-+++.+.. ....|+|+..++.|.-.++..-..|.+..||..
T Consensus 105 ~~~~~~~s~~py~~~rr~tekmqtrkn~~nd~aSyek~l~~~~dl~~a~t~~em~~~~e~tk~~L~~~t~ei~~kr~e~~ 184 (716)
T KOG2261|consen 105 EKRDGSASNKPYVAFRRRTEKMQTRKNRKNDEASYEKMLKLRRDLSRAYTILEMEKRREKTKRELLEKTSEISEKRFEMG 184 (716)
T ss_pred ccCCccccCCchhhhhhhhhccccccccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHhhcchhhhhhhhhhhc
Confidence 233445555655555556665543 3777888888777654433 446788888888888887766677888888888
Q ss_pred HHHHhcccHHHhhhhccCCCCCCCCCC-cccCHHHHHHHhhhhccchhHHHHHHHHHHHHHHhhcCCCc--ccccCCCCC
Q 022428 153 MFKLEVLDHKARERAGLITPTLGSPIP-ILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKRERWQKPI--LRRLQPPPP 229 (297)
Q Consensus 153 md~fEk~~~~~~er~~~~~P~~~~~~~-~v~~~dea~~~l~~~~~~~~~~~~~VY~yWk~KR~r~g~pL--lr~l~~~~~ 229 (297)
+...|-.++..-++.|.+.|+++.+.+ ...+...+.+.+... .....++..+|+||+.||.-.|+|. +...++.++
T Consensus 185 df~~~~~s~~~~~~~~~~~P~~~~~~~i~~~s~~~~~~~l~~~-~~~~~~~~~~~~y~r~k~~~~~~~~~~~~~~Q~~pp 263 (716)
T KOG2261|consen 185 DFEGEMSSEVEPERKGAYKPLLSAPFAIILLSPMDTMEALKLR-VLKESFFSSKYDYWREKRKIEGGPKAQMTSQQPLPP 263 (716)
T ss_pred ccccccccccchhhhhccCccccCcchhhcCCHHHHHhhhhhh-hhhhhhhhHHHHHHhhhccccCCchhhhhhhcCCCC
Confidence 777777777767778878899987765 223333444555443 4456677899999999997777655 466677778
Q ss_pred CCCCCCcccccccchhhhhhhhhh-----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022428 230 VNDTNPYNVFRPREKAHRLHTRRM-----QRRENNVQSFEKLRQVRRNLDQAKSILEALIKRRKKERGHGGG 296 (297)
Q Consensus 230 ~~d~dPyv~FRrRe~~~~~ktRr~-----q~R~nd~~s~eKl~~Lr~dl~~ar~L~~~v~~RE~~Kr~~~~~ 296 (297)
.++.|||||||+|++++.++|||. |-|+|++++++++++.+.-+..|..|.+...+||..+.+...|
T Consensus 264 v~~~~~yv~fr~r~~r~~~~trr~~~~s~~~een~~e~~~~~Rr~~~~~~~a~~l~~~~~k~e~~~~d~~~s 335 (716)
T KOG2261|consen 264 VFDADPYVCFRRRESRHSRKTRRSSLNSEQEEENDAESVFAFRRRRGCLYYAQRLLEKAHKRENKKEDFDPD 335 (716)
T ss_pred CCCCCCceecccccccchhhccccccchhhhhhhcccchHHHhhhhhccccchhHHHhhcchhccccccCcc
Confidence 999999999999999999999994 4589999999999999999999999999999999998776544
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.00 E-value=6.2e-06 Score=84.52 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=71.5
Q ss_pred cCCCCCCCCCCccceecCCCccccCCCCCCCccceecccch-h----------ccCCccccCCCHHHHHHHHHHhcCC--
Q 022428 75 PSKKSASEIPTPQFVVVDTYERDYSQTFDQPTSYLRARGAR-A----------ELGDFVEYDLDNEDEDWLDEFNRDQ-- 141 (297)
Q Consensus 75 ~~~~~~~~IP~P~~~~v~~y~~~y~~~F~~P~~YIr~~~~~-~----------e~~~~~~YdmDeeDe~wL~~~N~~~-- 141 (297)
+..+++..+|+|.+.++...-. -...|+.|..||+.+... . ...+.|.||+|..|..||..+|.++
T Consensus 150 Qvpaspd~lpqp~v~~dse~v~-~~~~fs~pkkyivc~~~~~~e~~yn~~~~~lae~tcrydid~~d~awL~~~n~e~~~ 228 (893)
T KOG0954|consen 150 QVPASPDTLPQPSVRVDSEDVQ-PETDFSRPKKYIVCSDGEVPELGYNLLIKDLAESTCRYDIDDMDPAWLQLVNEERAE 228 (893)
T ss_pred cccCCCCcCCCcceeccchhcc-hhhhhcCCcceEEeCCCCCcccchhhhHHHHhhhhhhcccccccHHHHHHhcchHHh
Confidence 3578899999999987774322 235799999999997543 1 1346799999999999999999864
Q ss_pred ---CCCCHHHHHHHHHHHhcccHHH
Q 022428 142 ---KLLPPEKFETLMFKLEVLDHKA 163 (297)
Q Consensus 142 ---~~ise~~FE~imd~fEk~~~~~ 163 (297)
..+.+-.||+||..||..|++.
T Consensus 229 ~G~~~l~~~~~eRiieelE~~c~kq 253 (893)
T KOG0954|consen 229 MGSLELDEGTFERIIEELERRCKKQ 253 (893)
T ss_pred hCCcccchHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999873
No 5
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.96 E-value=0.0045 Score=61.54 Aligned_cols=43 Identities=33% Similarity=0.378 Sum_probs=38.3
Q ss_pred CccccCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHhcccHH
Q 022428 120 DFVEYDLDNEDEDWLDEFNRDQ--KLLPPEKFETLMFKLEVLDHK 162 (297)
Q Consensus 120 ~~~~YdmDeeDe~wL~~~N~~~--~~ise~~FE~imd~fEk~~~~ 162 (297)
-.|.||||+-|+-||.=+|+.. ..+|++-||.+|++||++.+.
T Consensus 129 f~v~YdlDe~D~m~l~Ylne~~~~e~vS~e~fEii~t~lE~EWf~ 173 (669)
T COG5141 129 FSVIYDLDEYDTMWLRYLNESAIDENVSEEAFEIIVTRLEKEWFF 173 (669)
T ss_pred CceeecccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999753 579999999999999998776
No 6
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=95.80 E-value=0.012 Score=61.11 Aligned_cols=75 Identities=16% Similarity=0.306 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHhhc-CCCcccccCCCCCCCCCCCcccccccchhhhhhhhhhhcccccHHHHHHHHHHHHHHHHHH
Q 022428 199 YAVFQSVYHYWKEKRERW-QKPILRRLQPPPPVNDTNPYNVFRPREKAHRLHTRRMQRRENNVQSFEKLRQVRRNLDQAK 277 (297)
Q Consensus 199 ~~~~~~VY~yWk~KR~r~-g~pLlr~l~~~~~~~d~dPyv~FRrRe~~~~~ktRr~q~R~nd~~s~eKl~~Lr~dl~~ar 277 (297)
...+-+||+|||.||+.. .++|||...- +.+ .++=+-++ ..|+ |-++ ...||.||++++
T Consensus 500 e~~vs~iynywklkrks~~n~~lippk~d-----~~~-~i~kk~~~---~~kv-----~~kl------~ahlrqdlerv~ 559 (893)
T KOG0954|consen 500 EFAVSAIYNYWKLKRKSRFNKELIPPKSD-----EVG-LIAKKLED---LGKV-----RVKL------VAHLRQDLERVR 559 (893)
T ss_pred hHHHHHHHHHHHHhhhccCCCcCCCCcch-----hcc-chhhHHHH---hhhh-----hhHH------HHHHHHHHHHhh
Confidence 345569999999999655 4899986642 111 11111111 1111 1112 245789999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 022428 278 SILEALIKRRKKERGH 293 (297)
Q Consensus 278 ~L~~~v~~RE~~Kr~~ 293 (297)
.++.++.+||++++-+
T Consensus 560 ~~~~~~trrekas~s~ 575 (893)
T KOG0954|consen 560 NLCYTKTRREKASNSY 575 (893)
T ss_pred cccchhcccchhhhhH
Confidence 9999999999988754
No 7
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.21 E-value=0.047 Score=59.42 Aligned_cols=63 Identities=32% Similarity=0.375 Sum_probs=48.9
Q ss_pred CCCCCccceecccchh-ccCCccccCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHhcccHHH
Q 022428 101 TFDQPTSYLRARGARA-ELGDFVEYDLDNEDEDWLDEFNRD-----QKLLPPEKFETLMFKLEVLDHKA 163 (297)
Q Consensus 101 ~F~~P~~YIr~~~~~~-e~~~~~~YdmDeeDe~wL~~~N~~-----~~~ise~~FE~imd~fEk~~~~~ 163 (297)
.-..|..|..+..... .....+.|+||++|..||..+|.. ...++.+.||.+||++|+.++..
T Consensus 136 ~~~~p~~~~~~~~~~~~~~~~e~~y~~de~d~~wl~~~n~~~~~~~~~~v~~~~~~~~~dr~eke~~f~ 204 (1051)
T KOG0955|consen 136 APPRPNFYYDEIEKSKETLDEEVEYDLDEEDYSWLDIMNELRTRNGVFDVSIDTFELLVDRLEKESYFK 204 (1051)
T ss_pred CCCCCCcchhhhccchhhhccccccchHHHHHHHHhhhhHHHhhcCCccccccchhhhhhhHHHHHHhh
Confidence 3444666666654432 456789999999999999999974 35889999999999999977663
No 8
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=94.01 E-value=0.05 Score=59.23 Aligned_cols=76 Identities=28% Similarity=0.406 Sum_probs=53.8
Q ss_pred HHHHHHHHHH-hhcCCCcccccCCCCCCCCCCCcccccccchhhhhhhhhhhcccccH------HHHHHHHHHHHHHHHH
Q 022428 204 SVYHYWKEKR-ERWQKPILRRLQPPPPVNDTNPYNVFRPREKAHRLHTRRMQRRENNV------QSFEKLRQVRRNLDQA 276 (297)
Q Consensus 204 ~VY~yWk~KR-~r~g~pLlr~l~~~~~~~d~dPyv~FRrRe~~~~~ktRr~q~R~nd~------~s~eKl~~Lr~dl~~a 276 (297)
.|..||-.|| .+.|.||+++|+..-.. +|= ...+ .+.+|. +++.--+.|+.+++.+
T Consensus 472 ~i~~~w~~kR~~r~g~pLl~~lq~~~~s---------~rn-------~~~~-~~~~D~~~~~~~d~~k~~~~L~~~~~s~ 534 (1051)
T KOG0955|consen 472 RICKYWYLKRLSRNGAPLLGRLQSLSKS---------SRN-------KEQV-GREGDLKNKARVDSLKYWQALRLDLESA 534 (1051)
T ss_pred hhhhhHHHHHHhhCCcchhhhhhhhhhc---------ccc-------chhc-ccccCccchhhhHHHHHHHHHHHHHHHH
Confidence 8899999998 88899999988853211 110 0000 122222 3444567899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 022428 277 KSILEALIKRRKKERGHGGG 296 (297)
Q Consensus 277 r~L~~~v~~RE~~Kr~~~~~ 296 (297)
+.|++++++|+++|+++..+
T Consensus 535 ~~l~e~~r~r~~lk~~~~~~ 554 (1051)
T KOG0955|consen 535 QLLVELTRKREKLKRILVKS 554 (1051)
T ss_pred HHHHHhhhhHHHHHHHHhch
Confidence 99999999999999997654
No 9
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=72.99 E-value=9 Score=38.88 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHh-hcCCCcccccCCCCCCCCCCCcccccccchhhhhhhhhhhcccccHHHHHHHHHHH---HHHHHHHH
Q 022428 203 QSVYHYWKEKRE-RWQKPILRRLQPPPPVNDTNPYNVFRPREKAHRLHTRRMQRRENNVQSFEKLRQVR---RNLDQAKS 278 (297)
Q Consensus 203 ~~VY~yWk~KR~-r~g~pLlr~l~~~~~~~d~dPyv~FRrRe~~~~~ktRr~q~R~nd~~s~eKl~~Lr---~dl~~ar~ 278 (297)
-+|-.||--||+ +.|.||+-. . .++.- ++|+- +.+|..+|+..- .|+-+..+
T Consensus 440 fdIckyw~mKR~~~~g~PL~~~-~----------~~~~s-------l~tl~------~~~sk~R~~~~~~~LqD~YqL~~ 495 (669)
T COG5141 440 FDICKYWEMKRKSEIGGPLVIL-P----------DIVYS-------LKTLE------DWMSKRRMREVAKALQDQYQLLT 495 (669)
T ss_pred hHHHHHHHHhhhhcCCCCceec-h----------hhhhc-------ccccH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999985 889998721 0 01100 11211 334444444332 34556888
Q ss_pred HHHHHHHHHHHHhhhc
Q 022428 279 ILEALIKRRKKERGHG 294 (297)
Q Consensus 279 L~~~v~~RE~~Kr~~~ 294 (297)
|++++++|-.+|-++-
T Consensus 496 L~~~~~KR~~~~~qLS 511 (669)
T COG5141 496 LVESTAKRQLLKCQLS 511 (669)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 9999999999887653
No 10
>PF14954 LIX1: Limb expression 1
Probab=55.77 E-value=13 Score=33.99 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CcccccCCCCCCCCCCCcccc
Q 022428 199 YAVFQSVYHYWKEKRERWQK-PILRRLQPPPPVNDTNPYNVF 239 (297)
Q Consensus 199 ~~~~~~VY~yWk~KR~r~g~-pLlr~l~~~~~~~d~dPyv~F 239 (297)
..++.++.+||..|..+... +.=--+-++......-|||||
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcy 62 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCY 62 (252)
T ss_pred chHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEE
Confidence 56888999999877655321 100111122233455689875
No 11
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=48.81 E-value=11 Score=36.36 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=41.1
Q ss_pred CCCCCCccceecccchhccCCccccCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 022428 100 QTFDQPTSYLRARGARAELGDFVEYDLDNEDEDWLDEFNRDQKLLPPEKFETLMFKLEV 158 (297)
Q Consensus 100 ~~F~~P~~YIr~~~~~~e~~~~~~YdmDeeDe~wL~~~N~~~~~ise~~FE~imd~fEk 158 (297)
..|.+|-.|+|.|-|. ...-.|.|+|-+.+..|+.. ...||.++.+.++..|=.
T Consensus 4 D~~gR~~~~LRiSvTd-rCNfrC~YCm~eg~~~~~~~----~~~Ls~eei~~~~~~~~~ 57 (322)
T COG2896 4 DRFGRPVRYLRISVTD-RCNFRCTYCMPEGPLAFLPK----EELLSLEEIRRLVRAFAE 57 (322)
T ss_pred cccCCEeceEEEEEec-CcCCcccccCCCCCcccCcc----cccCCHHHHHHHHHHHHH
Confidence 4689999999998664 44567999999997888763 236788888888777644
No 12
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=34.63 E-value=28 Score=28.75 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccC
Q 022428 200 AVFQSVYHYWKEKRERWQKPILRRLQ 225 (297)
Q Consensus 200 ~~~~~VY~yWk~KR~r~g~pLlr~l~ 225 (297)
....++|+||.++|...+-|.-..+.
T Consensus 4 ~~~~~l~~yW~~~r~~~~~P~R~did 29 (137)
T PF07310_consen 4 PSLRALLAYWRSLRGGRGMPSRSDID 29 (137)
T ss_pred hHHHHHHHHHHHhcCCCCCCchhcCC
Confidence 34569999999999655555544443
No 13
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=28.78 E-value=66 Score=25.98 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=26.3
Q ss_pred CCHHHH-HHHHHHhcC--CCCCCHHHHHHHHHHHhcc
Q 022428 126 LDNEDE-DWLDEFNRD--QKLLPPEKFETLMFKLEVL 159 (297)
Q Consensus 126 mDeeDe-~wL~~~N~~--~~~ise~~FE~imd~fEk~ 159 (297)
||+|+. .+|....++ ...||..+++.+|+.|+..
T Consensus 1 lddd~YR~~L~~~~Gk~S~k~lt~~el~~vl~~l~~~ 37 (119)
T PF06252_consen 1 LDDDTYRALLQRVTGKSSSKDLTEAELEKVLDELKRL 37 (119)
T ss_pred CCHHHHHHHHHHHhChhhHHHCCHHHHHHHHHHHHHc
Confidence 677776 566665443 4689999999999999985
No 14
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=24.15 E-value=3e+02 Score=23.76 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=52.0
Q ss_pred HHHHHHhhhhccchhHHHHHHHHHHHHHHhhc------CCCcccccCCCC-------CC----CCCCCcccccccchhhh
Q 022428 185 GVAIEALKDQTTVGYAVFQSVYHYWKEKRERW------QKPILRRLQPPP-------PV----NDTNPYNVFRPREKAHR 247 (297)
Q Consensus 185 dea~~~l~~~~~~~~~~~~~VY~yWk~KR~r~------g~pLlr~l~~~~-------~~----~d~dPyv~FRrRe~~~~ 247 (297)
+.....|..+ +...+....+...|..+|... ...-+++|.--. .+ .-++|++-++=-.....
T Consensus 63 ~~l~~eL~~l-glp~e~~~~l~~~~~~~~~~l~~~l~~~~l~~~~L~d~~WRld~~lsSs~l~~~~~P~~~l~L~v~~~~ 141 (174)
T cd04752 63 ESLSSELQQL-GLPKEHATSLCRSYEEKQSKLQESLRANSLRLSRLESVDWRVDYILSSSELQEVNEPLVQLRLKVRNAD 141 (174)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccceeeEEEEcchhhhhcCCCeEEEEEeeecCC
Confidence 3444445554 566788889999999998543 122233332100 11 12577775544321000
Q ss_pred hhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 022428 248 LHTRRMQRRENNVQSFEKLRQVRRNLDQAKSILEA 282 (297)
Q Consensus 248 ~ktRr~q~R~nd~~s~eKl~~Lr~dl~~ar~L~~~ 282 (297)
.-. .+--.=+-+.++|+.|..+|+.|+.+++.
T Consensus 142 --~~~-~~~v~~e~s~~ql~~L~~eLe~A~~~m~~ 173 (174)
T cd04752 142 --TGE-ITPHPFSVSADKFRVLLAELKQAQTLMET 173 (174)
T ss_pred --CCC-cceEEEEecHHHHHHHHHHHHHHHHHHhc
Confidence 000 00000146779999999999999998763
No 15
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.55 E-value=1.4e+02 Score=30.37 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022428 259 NVQSFEKLRQVRRNLDQAKSILEALIKRRKKERG 292 (297)
Q Consensus 259 d~~s~eKl~~Lr~dl~~ar~L~~~v~~RE~~Kr~ 292 (297)
-++..++|.+||.+|++|-.-+.-+.+||+-.++
T Consensus 458 KeeeverLQ~lkgelEkat~SALdlLkrEKe~~E 491 (527)
T PF15066_consen 458 KEEEVERLQQLKGELEKATTSALDLLKREKETRE 491 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999888888888887765
No 16
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=22.13 E-value=66 Score=29.63 Aligned_cols=15 Identities=47% Similarity=1.035 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHH-hh
Q 022428 201 VFQSVYHYWKEKR-ER 215 (297)
Q Consensus 201 ~~~~VY~yWk~KR-~r 215 (297)
++..|++||+-|| ++
T Consensus 208 ~irsi~dY~rVKR~Er 223 (233)
T PF10176_consen 208 FIRSIIDYWRVKRMER 223 (233)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5569999999999 54
No 17
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.76 E-value=2.2e+02 Score=23.25 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHhc
Q 022428 125 DLDNEDEDWLDEFNR 139 (297)
Q Consensus 125 dmDeeDe~wL~~~N~ 139 (297)
.|+.||.+|+..|=.
T Consensus 33 ~L~~E~~~Fi~~Fi~ 47 (113)
T PF09862_consen 33 RLSPEQLEFIKLFIK 47 (113)
T ss_pred cCCHHHHHHHHHHHH
Confidence 488999999998743
No 18
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.43 E-value=4.6e+02 Score=21.69 Aligned_cols=12 Identities=33% Similarity=1.063 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHh
Q 022428 203 QSVYHYWKEKRE 214 (297)
Q Consensus 203 ~~VY~yWk~KR~ 214 (297)
..+|+||++.|+
T Consensus 91 li~~E~~Rs~~k 102 (134)
T PF07047_consen 91 LIIYEYWRSARK 102 (134)
T ss_pred HHHHHHHHHHhh
Confidence 489999998874
No 19
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=20.61 E-value=2.7e+02 Score=18.45 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Q 022428 262 SFEKLRQVRRNLD-------QAKSILEALIKRRKKERGH 293 (297)
Q Consensus 262 s~eKl~~Lr~dl~-------~ar~L~~~v~~RE~~Kr~~ 293 (297)
-.++++.|...+. .-+.|..+|.+|-++++.+
T Consensus 7 lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~yl 45 (46)
T cd00677 7 LTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYL 45 (46)
T ss_pred HHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 3467788888888 7999999999998887654
Done!