Query 022428
Match_columns 297
No_of_seqs 208 out of 414
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lv4_A Catestatin, chromograni 91.4 0.097 3.3E-06 30.3 1.8 20 3-22 4-23 (26)
2 4b19_A PEPA1; toxin, toxin apo 65.1 4.7 0.00016 24.3 2.4 17 199-215 13-29 (30)
3 3dvk_B Voltage-dependent R-typ 46.2 11 0.00038 21.4 1.7 12 204-215 11-22 (23)
4 3dve_B Voltage-dependent N-typ 32.0 11 0.00039 21.3 0.3 12 204-215 10-21 (23)
5 1b0n_B Protein (SINI protein); 25.3 24 0.00081 24.4 1.0 35 126-160 8-43 (57)
6 3bxl_B CAM, voltage-dependent 23.4 39 0.0014 19.6 1.5 10 204-213 7-16 (26)
7 2f8e_A VPG protein; RNA-depend 15.4 42 0.0014 19.2 0.4 16 7-22 9-24 (26)
8 1l4a_C S-SNAP25 fusion protein 14.3 3.4E+02 0.012 19.7 5.4 35 257-291 23-59 (83)
9 3g43_E Voltage-dependent L-typ 13.5 73 0.0025 23.5 1.4 13 204-216 68-80 (81)
10 1nhl_A Synaptosomal-associated 13.0 2.9E+02 0.01 18.1 4.3 26 266-291 5-32 (54)
No 1
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=91.45 E-value=0.097 Score=30.31 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.8
Q ss_pred CCccCCCCCCCCCCcccccc
Q 022428 3 RLSIRPRPLDIHKKLPIVKS 22 (297)
Q Consensus 3 ~~sfR~r~ld~~~~l~i~~~ 22 (297)
|+|||+|+-|...|.|-++.
T Consensus 4 KlsFRar~Y~Fr~Pg~~~rr 23 (26)
T 1lv4_A 4 KLSFRARAYGFRGPGPQLXX 23 (26)
T ss_dssp CSCSCCCSSSSCSSCTTC--
T ss_pred eEeeeeeecccCCCcccccc
Confidence 89999999999999987664
No 2
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=65.12 E-value=4.7 Score=24.35 Aligned_cols=17 Identities=18% Similarity=0.563 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHhh
Q 022428 199 YAVFQSVYHYWKEKRER 215 (297)
Q Consensus 199 ~~~~~~VY~yWk~KR~r 215 (297)
...+-+.|.||++.|..
T Consensus 13 sGcivalF~hWL~~r~~ 29 (30)
T 4b19_A 13 SGCAIAFFSYWLSRRNT 29 (30)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 34555999999999843
No 3
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=46.17 E-value=11 Score=21.37 Aligned_cols=12 Identities=17% Similarity=0.620 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q 022428 204 SVYHYWKEKRER 215 (297)
Q Consensus 204 ~VY~yWk~KR~r 215 (297)
.|++||+..|++
T Consensus 11 lI~d~~r~~k~r 22 (23)
T 3dvk_B 11 MIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc
Confidence 799999988754
No 4
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=31.98 E-value=11 Score=21.32 Aligned_cols=12 Identities=8% Similarity=0.681 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhh
Q 022428 204 SVYHYWKEKRER 215 (297)
Q Consensus 204 ~VY~yWk~KR~r 215 (297)
.|++||++.|.+
T Consensus 10 lI~d~~r~~k~~ 21 (23)
T 3dve_B 10 MIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhhc
Confidence 799999987643
No 5
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=25.30 E-value=24 Score=24.37 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHhccc
Q 022428 126 LDNEDEDWLDEFNR-DQKLLPPEKFETLMFKLEVLD 160 (297)
Q Consensus 126 mDeeDe~wL~~~N~-~~~~ise~~FE~imd~fEk~~ 160 (297)
+.+-|.+||.-+.. ++..+|-+++..++....+.+
T Consensus 8 ~~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 8 HFELDQEWVELMVEAKEANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp -CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Confidence 56778999988754 467999999999998776643
No 6
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=23.36 E-value=39 Score=19.56 Aligned_cols=10 Identities=20% Similarity=0.717 Sum_probs=8.4
Q ss_pred HHHHHHHHHH
Q 022428 204 SVYHYWKEKR 213 (297)
Q Consensus 204 ~VY~yWk~KR 213 (297)
.||+||++-+
T Consensus 7 mI~e~yrq~K 16 (26)
T 3bxl_B 7 MIMDYYKQSK 16 (26)
T ss_pred HHHHHHHHHH
Confidence 7999998765
No 7
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=15.39 E-value=42 Score=19.18 Aligned_cols=16 Identities=44% Similarity=0.821 Sum_probs=13.3
Q ss_pred CCCCCCCCCCcccccc
Q 022428 7 RPRPLDIHKKLPIVKS 22 (297)
Q Consensus 7 R~r~ld~~~~l~i~~~ 22 (297)
|++||-++..+|+.+.
T Consensus 9 rq~plkvkak~p~~~~ 24 (26)
T 2f8e_A 9 RQRPLKVKAKLPQAEX 24 (26)
T ss_pred hcCcceeeeccccccc
Confidence 7889999999998654
No 8
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=14.31 E-value=3.4e+02 Score=19.75 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q 022428 257 ENNVQSFEKLRQVRRNLDQA--KSILEALIKRRKKER 291 (297)
Q Consensus 257 ~nd~~s~eKl~~Lr~dl~~a--r~L~~~v~~RE~~Kr 291 (297)
..+.+|..++.+|-.+.+.+ .+|..+..++|++.+
T Consensus 23 ~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~r 59 (83)
T 1l4a_C 23 DDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDR 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999998887 899999999999886
No 9
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=13.51 E-value=73 Score=23.49 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhc
Q 022428 204 SVYHYWKEKRERW 216 (297)
Q Consensus 204 ~VY~yWk~KR~r~ 216 (297)
-|++||+.-|++.
T Consensus 68 lI~d~~r~~k~r~ 80 (81)
T 3g43_E 68 LIQEYFRKFKKRE 80 (81)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhcc
Confidence 8999999887553
No 10
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=13.01 E-value=2.9e+02 Score=18.14 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=14.8
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHh
Q 022428 266 LRQVRRNLDQA--KSILEALIKRRKKER 291 (297)
Q Consensus 266 l~~Lr~dl~~a--r~L~~~v~~RE~~Kr 291 (297)
+.+|-.+.+.+ .+|.++..+||++.+
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r 32 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNR 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence 34444444443 566667777777664
Done!