Query 022428
Match_columns 297
No_of_seqs 208 out of 414
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 05:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022428.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022428hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v4ja3 d.134.1.1 (A:168-241,A 21.9 21 0.0016 28.1 2.4 47 199-245 111-173 (189)
2 d1z7aa1 c.6.2.6 (A:4-304) Hypo 19.4 12 0.0009 31.7 0.4 87 121-212 205-297 (301)
3 d1f00i3 d.169.1.3 (I:842-939) 15.1 64 0.0047 22.8 3.4 28 182-209 10-40 (98)
4 d1lr1a_ a.155.1.1 (A:) H1 prot 10.7 89 0.0065 19.8 2.7 29 132-160 2-36 (57)
5 d1gvna_ a.8.2.1 (A:) Plasmid m 10.6 65 0.0047 22.0 2.1 15 199-213 61-75 (88)
6 d2pf5a1 d.169.1.4 (A:1-95) TSG 10.6 64 0.0047 22.4 2.2 30 181-211 13-42 (95)
7 d2d8da1 a.130.1.1 (A:3-82) Cho 8.5 1.3E+02 0.0097 19.4 3.2 26 264-289 1-27 (80)
8 d1g41a_ c.37.1.20 (A:) HslU {H 7.7 1.5E+02 0.011 25.9 3.9 10 204-213 29-38 (443)
9 d1urfa_ a.2.6.1 (A:) Protein k 7.5 1.9E+02 0.014 19.3 3.6 20 261-280 54-73 (81)
10 d2cg4a1 a.4.5.32 (A:4-66) Regu 7.3 2.6E+02 0.019 17.0 4.6 35 124-158 1-45 (63)
No 1
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=21.87 E-value=21 Score=28.12 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHh---hcC--------CCcccccCCCC-----CCCCCCCcccccccchh
Q 022428 199 YAVFQSVYHYWKEKRE---RWQ--------KPILRRLQPPP-----PVNDTNPYNVFRPREKA 245 (297)
Q Consensus 199 ~~~~~~VY~yWk~KR~---r~g--------~pLlr~l~~~~-----~~~d~dPyv~FRrRe~~ 245 (297)
.+++..|.+||+..++ |.| .+++..++..+ ..-++||||-|..=|+.
T Consensus 111 ~~vv~~ii~~Y~e~ak~~ER~g~~IeRvGle~F~e~v~l~~~~~mv~~p~~~py~~~~~~~~~ 173 (189)
T d2v4ja3 111 KEVVEKIWDWWMEEGKNRERLGETMKRLSFQKLLEVTEIAPVPQHVKEPRTNPYIFFKEEEVP 173 (189)
T ss_dssp HHHHHHHHHHHHHHSCTTCCHHHHHHHHCHHHHHHHTTCCCCGGGBSSCCSSCCCCCCGGGST
T ss_pred HHHHHHHHHHHHHhCcccchhhhhHHhhCcHHHHHHHCCCCChhhhCCCCCCCccCcccccCC
Confidence 4456688889987763 222 13334444322 23478999999986543
No 2
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.41 E-value=12 Score=31.69 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=45.6
Q ss_pred ccccCCCHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHhcccHHHhhhhc-c----CCCCCCCCCCcccCHHHHHHHhhhh
Q 022428 121 FVEYDLDNEDEDWLDEFNRDQKLLPPEKF-ETLMFKLEVLDHKARERAG-L----ITPTLGSPIPILLQLGVAIEALKDQ 194 (297)
Q Consensus 121 ~~~YdmDeeDe~wL~~~N~~~~~ise~~F-E~imd~fEk~~~~~~er~~-~----~~P~~~~~~~~v~~~dea~~~l~~~ 194 (297)
.+.|.++..|..++.. ....+.+.| +.+.+.|.....+.. ..| + +.|++.+....+-.++++.+.++..
T Consensus 205 ~iP~~~~~~D~~~~~~----~~~~~~~~~~~~~~d~fd~l~~e~~-~~~~~~~l~lHP~i~G~P~Ri~~Le~~l~~i~~~ 279 (301)
T d1z7aa1 205 VIPYTLDTNDMRFTQV----QGFNNGEQFFQYLKDAFDVLYEEGA-TAPKMLSIGLHCRLIGRPARMAALERFIQYAQSH 279 (301)
T ss_dssp ECCCCSSSBGGGGGST----TCCSSHHHHHHHHHHHHHHHHHHTT-TSCEEEEEEEETTTTTSHHHHHHHHHHHHHHHTS
T ss_pred Eeccccccchhhhhhc----CCCCCHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeeCCcccCCHHHHHHHHHHHHHHHcC
Confidence 3567777777554431 234567666 566777766533321 122 2 2466543322233345554444433
Q ss_pred ccchhHHHHHHHHHHHHH
Q 022428 195 TTVGYAVFQSVYHYWKEK 212 (297)
Q Consensus 195 ~~~~~~~~~~VY~yWk~K 212 (297)
..+=.....+|.+||+++
T Consensus 280 ~dVW~at~~eIA~~~~~~ 297 (301)
T d1z7aa1 280 DKVWFARREDIARHWHRE 297 (301)
T ss_dssp SSEEECCHHHHHHHHHHH
T ss_pred CCEEEcCHHHHHHHHHHH
Confidence 223345567999999864
No 3
>d1f00i3 d.169.1.3 (I:842-939) Intimin {Escherichia coli [TaxId: 562]}
Probab=15.08 E-value=64 Score=22.77 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=21.7
Q ss_pred cCHHHHHHHhhhh---ccchhHHHHHHHHHH
Q 022428 182 LQLGVAIEALKDQ---TTVGYAVFQSVYHYW 209 (297)
Q Consensus 182 ~~~dea~~~l~~~---~~~~~~~~~~VY~yW 209 (297)
+++++|...++.+ .+.....+..||+-|
T Consensus 10 v~Y~~A~~~C~~~~g~LpsSq~eL~~vy~~W 40 (98)
T d1f00i3 10 VTYNDAVNTCKNFGGKLPSSQNELENVFKAW 40 (98)
T ss_dssp ECHHHHHHHHHHTTCBCCSSHHHHHHHHHHH
T ss_pred eEHHHHHHHHHhcCCCCCccHHHHHHHHhcc
Confidence 5688998877764 245578899999999
No 4
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=10.68 E-value=89 Score=19.85 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=21.9
Q ss_pred HHHHHHhcC------CCCCCHHHHHHHHHHHhccc
Q 022428 132 DWLDEFNRD------QKLLPPEKFETLMFKLEVLD 160 (297)
Q Consensus 132 ~wL~~~N~~------~~~ise~~FE~imd~fEk~~ 160 (297)
++|+.+|.- ...+|-+++|.|+++|....
T Consensus 2 e~LK~L~NIRsLRA~aRE~slE~LEe~lEKl~~Vv 36 (57)
T d1lr1a_ 2 EALKILNNIRTLRAQARESTLETLEEMLEKLEVVV 36 (57)
T ss_dssp HHHHHTTHHHHHHHHTTTSCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467777652 35899999999998887654
No 5
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=10.64 E-value=65 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHH
Q 022428 199 YAVFQSVYHYWKEKR 213 (297)
Q Consensus 199 ~~~~~~VY~yWk~KR 213 (297)
.+-+++|++||++-.
T Consensus 61 leELeaiheYwrsmn 75 (88)
T d1gvna_ 61 LEELQAVHEYWRSMN 75 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566779999998753
No 6
>d2pf5a1 d.169.1.4 (A:1-95) TSG-6, Link module {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.60 E-value=64 Score=22.44 Aligned_cols=30 Identities=13% Similarity=-0.040 Sum_probs=24.1
Q ss_pred ccCHHHHHHHhhhhccchhHHHHHHHHHHHH
Q 022428 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWKE 211 (297)
Q Consensus 181 v~~~dea~~~l~~~~~~~~~~~~~VY~yWk~ 211 (297)
-++|++|..+++.. +.......+|++-|+.
T Consensus 13 ~l~f~eA~~~C~~~-ga~LAt~~QL~~A~~~ 42 (95)
T d2pf5a1 13 KLTYAEAKAVCEFE-GGHLATYKQLEAARKI 42 (95)
T ss_dssp CBCHHHHHHHHHHT-TCEECCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHc-CCccCCHHHHHHHHHc
Confidence 47899999988886 6666777888888873
No 7
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=8.51 E-value=1.3e+02 Score=19.39 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 022428 264 EKLRQVRRNLDQA-KSILEALIKRRKK 289 (297)
Q Consensus 264 eKl~~Lr~dl~~a-r~L~~~v~~RE~~ 289 (297)
|+|..||.++... ..|+.++.+|=..
T Consensus 1 e~L~~lR~~ID~iD~~i~~Ll~~R~~~ 27 (80)
T d2d8da1 1 ERIQALRKEVDRVNREILRLLSERGRL 27 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888776 4677777777544
No 8
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=7.67 E-value=1.5e+02 Score=25.94 Aligned_cols=10 Identities=10% Similarity=0.597 Sum_probs=8.4
Q ss_pred HHHHHHHHHH
Q 022428 204 SVYHYWKEKR 213 (297)
Q Consensus 204 ~VY~yWk~KR 213 (297)
+||+||+..+
T Consensus 29 av~nhyrR~~ 38 (443)
T d1g41a_ 29 ALRNRWRRMQ 38 (443)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998555
No 9
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.49 E-value=1.9e+02 Score=19.28 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022428 261 QSFEKLRQVRRNLDQAKSIL 280 (297)
Q Consensus 261 ~s~eKl~~Lr~dl~~ar~L~ 280 (297)
+|..||..||..|.++....
T Consensus 54 eS~~Ki~lLr~~L~~~~q~~ 73 (81)
T d1urfa_ 54 DSKTKIDIIRMQLRRALQAD 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 78899999999998887654
No 10
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=7.34 E-value=2.6e+02 Score=16.99 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=27.0
Q ss_pred cCCCHHHHHHHHHHhcC----------CCCCCHHHHHHHHHHHhc
Q 022428 124 YDLDNEDEDWLDEFNRD----------QKLLPPEKFETLMFKLEV 158 (297)
Q Consensus 124 YdmDeeDe~wL~~~N~~----------~~~ise~~FE~imd~fEk 158 (297)
|-||+-|..-|+.+... .-.+|+...-.-|.+||+
T Consensus 1 y~lD~~D~~IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~ 45 (63)
T d2cg4a1 1 YLIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ 45 (63)
T ss_dssp CCCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67999999999987543 136788888888888876
Done!