BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022429
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTC
SCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSL
CRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFN
IIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR
VLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG

High Scoring Gene Products

Symbol, full name Information P value
AT4G10925 protein from Arabidopsis thaliana 1.1e-89
AT4G23960 protein from Arabidopsis thaliana 5.7e-36

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022429
        (297 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006436 - symbol:AT4G10925 "AT4G10925" speci...   895  1.1e-89   1
TAIR|locus:2138166 - symbol:AT4G23960 "AT4G23960" species...   388  5.7e-36   1


>TAIR|locus:505006436 [details] [associations]
            symbol:AT4G10925 "AT4G10925" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
            [GO:0048573 "photoperiodism, flowering" evidence=RCA]
            InterPro:IPR001810 PROSITE:PS50181 UniPathway:UPA00143
            EMBL:CP002687 GenomeReviews:CT486007_GR SUPFAM:SSF81383
            GO:GO:0016567 EMBL:AL161518 eggNOG:NOG252036
            ProtClustDB:CLSN2686016 EMBL:AF080118 EMBL:AL049525 EMBL:AY059743
            EMBL:AY096714 EMBL:AK117762 EMBL:AY084656 IPI:IPI00526761
            PIR:T01884 RefSeq:NP_001190698.1 RefSeq:NP_567369.1
            RefSeq:NP_849357.1 UniGene:At.26640 ProteinModelPortal:Q93YV9
            SMR:Q93YV9 STRING:Q93YV9 PaxDb:Q93YV9 PRIDE:Q93YV9 DNASU:826691
            EnsemblPlants:AT4G10925.1 EnsemblPlants:AT4G10925.2
            EnsemblPlants:AT4G10925.3 GeneID:826691 KEGG:ath:AT4G10925
            TAIR:At4g10925 HOGENOM:HOG000237950 InParanoid:Q93YV9 OMA:ANDDGAW
            PhylomeDB:Q93YV9 Genevestigator:Q93YV9 Uniprot:Q93YV9
        Length = 231

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 160/201 (79%), Positives = 179/201 (89%)

Query:    96 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV 155
             G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +
Sbjct:    33 GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGI 92

Query:   156 IPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNS 215
              PVNGWK YYA TRA+++VN EFF IIR+R+L AM+R WLN+DYVKCIHASGELFSGYN 
Sbjct:    93 TPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNE 152

Query:   216 VIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWY 275
             VIQSWQ+ FNWEQG DFQV  VR R+LTD+AWVTMK Y+++D GPF +TNVFEFHNG+W+
Sbjct:   153 VIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWH 212

Query:   276 MVHHHSSVMLVDGEVEQQVVH 296
             MVHHHSSVML+D +  Q VVH
Sbjct:   213 MVHHHSSVMLIDDQ--QVVVH 231


>TAIR|locus:2138166 [details] [associations]
            symbol:AT4G23960 "AT4G23960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001810 PROSITE:PS50181 EMBL:CP002687
            GenomeReviews:CT486007_GR SUPFAM:SSF81383 EMBL:AL078468
            EMBL:AL161560 IPI:IPI00520142 PIR:T08915 RefSeq:NP_194127.1
            UniGene:At.54495 ProteinModelPortal:Q9T0B0 SMR:Q9T0B0
            EnsemblPlants:AT4G23960.1 GeneID:828496 KEGG:ath:AT4G23960
            TAIR:At4g23960 eggNOG:NOG252036 PhylomeDB:Q9T0B0
            ProtClustDB:CLSN2686016 Genevestigator:Q9T0B0 Uniprot:Q9T0B0
        Length = 122

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 70/115 (60%), Positives = 90/115 (78%)

Query:    99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPV 158
             M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +   PV
Sbjct:     1 MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query:   159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGY 213
             NGWKA++A T+ V+ VN +FF+I+  RSLP M+  WLN+DYVKC + SGELF+GY
Sbjct:    61 NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.131   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      297       278   0.00081  115 3  11 22  0.44    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  225 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.80u 0.11s 19.91t   Elapsed:  00:00:01
  Total cpu time:  19.80u 0.11s 19.91t   Elapsed:  00:00:01
  Start:  Thu May  9 22:30:13 2013   End:  Thu May  9 22:30:14 2013

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