BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022429
         (297 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GWR|A Chain A, Crystal Structure Of Putative CalciumCALMODULIN-Dependent
           Protein Kinase Type Ii Association Domain (Yp_315894.1)
           From Thiobacillus Denitrificans Atcc 25259 At 2.00 A
           Resolution
 pdb|3GWR|B Chain B, Crystal Structure Of Putative CalciumCALMODULIN-Dependent
           Protein Kinase Type Ii Association Domain (Yp_315894.1)
           From Thiobacillus Denitrificans Atcc 25259 At 2.00 A
           Resolution
          Length = 144

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 178 FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDV 237
           F+     RSL      W   D+V CIH      +G  +V   W+  F        QV+ V
Sbjct: 17  FYAAFEARSLDDXXAVWARDDHVACIHPLAAPLNGRAAVAAGWRSXFGAAGRFRLQVKAV 76

Query: 238 RARVLTDIAWVTMKTYIDI--DTGP---FNMTNVFEFHNGQWYMVHHHSSVMLV 286
                 D     +  ++ I  +T P      TNV+      W  V HH+S + V
Sbjct: 77  HEIRQADHVIRIVDEFLTIGDETAPRPAILATNVYRREADGWRXVLHHASPLQV 130


>pdb|3CNX|A Chain A, Crystal Structure Of A Putative Dehydratase From The
           Ntf2-Like Family (Sav_4671) From Streptomyces
           Avermitilis At 2.10 A Resolution
 pdb|3CNX|B Chain B, Crystal Structure Of A Putative Dehydratase From The
           Ntf2-Like Family (Sav_4671) From Streptomyces
           Avermitilis At 2.10 A Resolution
 pdb|3CNX|C Chain C, Crystal Structure Of A Putative Dehydratase From The
           Ntf2-Like Family (Sav_4671) From Streptomyces
           Avermitilis At 2.10 A Resolution
          Length = 170

 Score = 38.5 bits (88), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 29/147 (19%)

Query: 175 NAEFFNIIRERSLPAMSRFWL---------------NADYVKCIHASGELFSGYNSVIQS 219
           N  F+          +S  WL               +A  V C+H    + SG   V++S
Sbjct: 18  NTAFYEAXERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRS 77

Query: 220 WQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYI--------DIDT-GPFN-----MTN 265
           + +     + + F + DV   V  D A VT    I        D D  GP        TN
Sbjct: 78  YALIXANTEYIQFFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPLVGQLVVATN 137

Query: 266 VFEFHNGQWYMVHHHSSVMLVDGEVEQ 292
           VF      W +  HH+S +L +   E+
Sbjct: 138 VFRRTPDGWKLWSHHASPVLAETGAEE 164


>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
 pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
 pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
           Substrate
 pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
           Substrate
          Length = 897

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 111 ALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRA 170
            + ++  P +  L +TN L      D    K +Y             VN WK Y   T  
Sbjct: 534 GVHFIGMPKVLELVLTNGL------DKRTGKQVYPPHNKKLDSYETMVNQWKEYMELTTD 587

Query: 171 VVN-VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVI 217
           VVN  N    +I R+ ++PA++   L  D  K     G + + YNS I
Sbjct: 588 VVNRCNNIQMDIWRKYNMPAVNSL-LKPDCFKKGKHIGTMGARYNSCI 634


>pdb|3L2O|B Chain B, Structure-Based Mechanism Of Dimerization-Dependent
           Ubiquitination By The Scffbx4 Ubiquitin Ligase
          Length = 312

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 96  GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 148
            AS + +L  ++  + LS+L    LC+L  TN    +   D   W+    +D 
Sbjct: 1   AASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.131    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,023,665
Number of Sequences: 62578
Number of extensions: 294242
Number of successful extensions: 470
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 4
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)