BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022429
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YV9|SKIP8_ARATH F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1
Length = 231
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 165/217 (76%), Positives = 186/217 (85%), Gaps = 3/217 (1%)
Query: 79 GRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN 138
G T T+ VA+ G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN
Sbjct: 16 GGERTTVTTSTVADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN 75
Query: 139 AWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNAD 198
AWKALYHKDFTLEQD + PVNGWK YYA TRA+++VN EFF IIR+R+L AM+R WLN+D
Sbjct: 76 AWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSD 135
Query: 199 YVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDT 258
YVKCIHASGELFSGYN VIQSWQ+ FNWEQG DFQV VR R+LTD+AWVTMK Y+++D
Sbjct: 136 YVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDG 195
Query: 259 GPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVV 295
GPF +TNVFEFHNG+W+MVHHHSSVML+D +QQVV
Sbjct: 196 GPFLITNVFEFHNGRWHMVHHHSSVMLID---DQQVV 229
>sp|Q9T0B0|FB335_ARATH Probable F-box protein At4g23960 OS=Arabidopsis thaliana
GN=At4g23960 PE=4 SV=1
Length = 122
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 90/115 (78%)
Query: 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPV 158
M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD W+ALY ++FT E + PV
Sbjct: 1 MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60
Query: 159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGY 213
NGWKA++A T+ V+ VN +FF+I+ RSLP M+ WLN+DYVKC + SGELF+GY
Sbjct: 61 NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115
>sp|Q54N86|FBXAL_DICDI F-box/WD repeat-containing protein A-like protein OS=Dictyostelium
discoideum GN=DDB_G0285445 PE=3 SV=1
Length = 1178
Score = 36.2 bits (82), Expect = 0.33, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 98 SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT 149
S+ + L E+ + + +D L R+S T + DDN W+ LY+++FT
Sbjct: 718 SLFDLLPYEMIQYIFTLMDATHLIRMSRTCKYFNRICLDDNIWRDLYNREFT 769
>sp|Q2UFN8|SCONB_ASPOR Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=sconB PE=3 SV=1
Length = 705
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI+ L YLD SLC+ + +S R A+DD W +
Sbjct: 208 LPPEISFKILCYLDTTSLCKAAQVSSRWRALADDDVVWHRM 248
>sp|B8NGT5|SCONB_ASPFN Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 /
NRRL 3357 / JCM 12722 / SRRC 167) GN=sconB PE=3 SV=1
Length = 706
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI+ L YLD SLC+ + +S R A+DD W +
Sbjct: 209 LPPEISFKILCYLDTTSLCKAAQVSSRWRALADDDVVWHRM 249
>sp|B8M7Q5|SCONB_TALSN Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Talaromyces stipitatus (strain ATCC 10500 / CBS
375.48 / QM 6759 / NRRL 1006) GN=sconB PE=3 SV=1
Length = 667
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAW 140
L PEI+ LSYLD SLCR + + + A+DD W
Sbjct: 188 LPPEISFKILSYLDTASLCRAAQVSRAWKCLADDDVVW 225
>sp|B6Q4Z5|SCONB_PENMQ Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59
/ QM 7333) GN=sconB PE=3 SV=1
Length = 660
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 66 AAASAAEREMLEVGRHAATAATAVVAERGSGASMME-----QLVPEITTHALSYLDYPSL 120
+AA A +RE++ G A + S ++ L PEI+ LSYLD SL
Sbjct: 139 SAAPAKQRELMLRGILAQCCFPQLSLISSSVRDLIRIDFITALPPEISFKILSYLDTASL 198
Query: 121 CRLSMTNSLMRKAANDDNAW 140
CR + + + A+DD W
Sbjct: 199 CRAAQVSRGWKCLADDDVVW 218
>sp|B6GZA1|SCONB_PENCW Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075
/ Wisconsin 54-1255) GN=sconB PE=3 SV=1
Length = 673
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAW 140
L PE++ L YLD SLCR + + R A+DD W
Sbjct: 171 LPPELSFKILRYLDTASLCRAAQVSPRWRALADDDVVW 208
>sp|O75426|FBX24_HUMAN F-box only protein 24 OS=Homo sapiens GN=FBXO24 PE=2 SV=2
Length = 580
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 19/184 (10%)
Query: 64 GPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVP-EITTHALSYLDYPSLCR 122
G A R ++ + + V +RG G + QL P E+ H +S+L L
Sbjct: 2 GEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLVA 61
Query: 123 LSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVN-VNAEFFNI 181
L T + + + W+ + + QD V WK A++N +F
Sbjct: 62 LGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWK-----RAAILNYTKGLYFQA 116
Query: 182 I--RERSL-----PAMS----RFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGV 230
R R L P ++ RF D+V + G LF N+++ + W++
Sbjct: 117 FGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLG-QMQWKRAC 175
Query: 231 DFQV 234
+ V
Sbjct: 176 RYVV 179
>sp|Q4X0A9|SCONB_ASPFU Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=sconB PE=3 SV=1
Length = 696
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI+ L YLD SLC+ + + R A+DD W +
Sbjct: 199 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRM 239
>sp|B0XTS1|SCONB_ASPFC Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 /
FGSC A1163) GN=sconB PE=3 SV=1
Length = 696
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI+ L YLD SLC+ + + R A+DD W +
Sbjct: 199 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRM 239
>sp|A1DHW6|SCONB_NEOFI Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=sconB PE=3 SV=1
Length = 689
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI+ L YLD SLC+ + + R A+DD W +
Sbjct: 192 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRM 232
>sp|Q00659|SCONB_EMENI Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=sconB PE=3 SV=2
Length = 678
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI L YLD SLC+ S + R A+DD W +
Sbjct: 184 LPPEIAFKILCYLDTTSLCKASQVSRGWRALADDDVVWHRM 224
>sp|A2QCU8|SCONB_ASPNC Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=sconB PE=3 SV=1
Length = 670
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAW 140
L PEI+ L YLD SLC+ + + R A+DD W
Sbjct: 169 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVW 206
>sp|Q0CY32|SCONB_ASPTN Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=sconB PE=3 SV=1
Length = 673
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI+ L YLD SLC+ + + R A+DD W +
Sbjct: 170 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRM 210
>sp|A1C7E4|SCONB_ASPCL Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=sconB PE=3 SV=1
Length = 700
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAW 140
L PEI+ L YLD SLC+ + + R A+DD W
Sbjct: 201 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVW 238
>sp|Q09855|POF11_SCHPO F-box/WD repeat-containing protein pof11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pof11 PE=1 SV=2
Length = 506
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 11/116 (9%)
Query: 39 QSDGATSATSATARKKSCN-----CTCSCNGPAAASAAEREMLEVGRHAATAATAVVAER 93
Q D + S + SC+ C P + +++ A+ + VVA
Sbjct: 3 QDDNGKNVVSKVSDLTSCSDFSTSSPVPCLNPLSHENNRIDLIR-DLLASLSKEGVVAVY 61
Query: 94 GSGASMM-----EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144
S++ E E++ SYLD LC+ + + ++ D WKALY
Sbjct: 62 NHVRSLLFTDFTEVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKALY 117
>sp|A2VE78|FBXL5_BOVIN F-box/LRR-repeat protein 5 OS=Bos taurus GN=FBXL5 PE=2 SV=1
Length = 691
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 88 AVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144
A V+E+ +G + L PE+ SYL+ LCR S ++ + A + WK LY
Sbjct: 196 AEVSEQSTGIT---HLPPEVMVSIFSYLNPQELCRCSQVSTKWSQLAKTGSLWKHLY 249
>sp|C5FP68|SCONB_ARTOC Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480)
GN=sconB PE=3 SV=1
Length = 674
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI+ LSYLD SLC + + R A+DD W +
Sbjct: 218 LPPEISFKILSYLDTASLCNAAQVSRNWRHLADDDVVWHRM 258
>sp|Q5XGI3|FBXL5_XENTR F-box/LRR-repeat protein 5 OS=Xenopus tropicalis GN=fbxl5 PE=2 SV=1
Length = 660
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 93 RGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144
R S AS+ L PE+ + SYL+ LCR S N+ + A + W+ LY
Sbjct: 197 RKSSASIC-NLPPEVMLNIFSYLNPQDLCRCSQVNTKWAQLARTGSLWRHLY 247
>sp|D4D8P3|SCONB_TRIVH Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Trichophyton verrucosum (strain HKI 0517) GN=sconB
PE=3 SV=1
Length = 663
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL--YHKDFTLEQ 152
L PEI+ LSYLD SLC + + R A+DD W + H D E+
Sbjct: 201 LPPEISFKILSYLDTASLCSAAQVSHSWRALADDDVVWHRMCEQHIDRKCEK 252
>sp|D4AM37|SCONB_ARTBC Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS
112371) GN=sconB PE=3 SV=1
Length = 663
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
L PEI+ LSYLD SLC + + R A+DD W +
Sbjct: 201 LPPEISFKILSYLDTASLCSAAQVSHSWRALADDDVVWHRM 241
>sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2
Length = 843
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 25 LLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAEREMLEVGRHAAT 84
LL RTA TKS+ + ++ + R K A S +++
Sbjct: 22 LLPKRTACPTKSSMEGASTSTTENFGHRAKR----------ARVSGKSQDL--------- 62
Query: 85 AATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144
+A AE+ + E+L E+ SYL LCR + + AND WK LY
Sbjct: 63 --SAAPAEQ----YLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLY 116
Query: 145 HKDFTLEQDSVIPVNG 160
+ F + + P G
Sbjct: 117 MEVFEYTRPMMHPEPG 132
>sp|P87060|POP1_SCHPO WD repeat-containing protein pop1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pop1 PE=1 SV=1
Length = 775
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 106 EITTHALSYLDYPSLCRLS-MTNSLMRKAANDDNAWKALYHKD--FTLEQDSVIPVNGWK 162
EIT L++LD PSLC +S +++ + ++++ WK+L+ KD F DS I +
Sbjct: 307 EITNLVLTHLDAPSLCAVSQVSHHWYKLVSSNEELWKSLFLKDGFFWDSIDSKIRTMCLE 366
Query: 163 AYYAATRAVVNVNAEFFNIIRERSLPAMSRF 193
+A + V FN +RER L A +
Sbjct: 367 QSLSACAIMKRVYFRHFN-LRERWLHAPEKI 396
>sp|Q8C2S5|FBXL5_MOUSE F-box/LRR-repeat protein 5 OS=Mus musculus GN=Fbxl5 PE=2 SV=2
Length = 690
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 70 AAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSL 129
A ER+ +V +++ AE ++ + L PE+ SYL+ LCR S ++
Sbjct: 177 AEERQ--KVLKYSVDEKADTEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSTK 234
Query: 130 MRKAANDDNAWKALY 144
+ A + WK LY
Sbjct: 235 WSQLAKTGSLWKHLY 249
>sp|Q7TSL3|FBX11_RAT F-box only protein 11 OS=Rattus norvegicus GN=Fbxo11 PE=2 SV=1
Length = 843
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPV 158
+ E+L E+ SYL LCR + + AND WK LY + F + + P
Sbjct: 71 LQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPE 130
Query: 159 NG 160
G
Sbjct: 131 PG 132
>sp|Q5FWF7|FBX48_HUMAN F-box only protein 48 OS=Homo sapiens GN=FBXO48 PE=2 SV=1
Length = 155
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 80 RHAATAATAVVAERGSGAS---MMEQLVPEITTHALSYLDYPSLCRLSMT----NSLMRK 132
R + T A +V AE+ S E L EIT S LD SLCR S+T N +R
Sbjct: 12 RVSHTEANSVDAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIR- 70
Query: 133 AANDDNAWKA 142
N D+ WK
Sbjct: 71 --NSDSLWKP 78
>sp|P39014|MET30_YEAST F-box protein MET30 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=MET30 PE=1 SV=1
Length = 640
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ--DSVIPVNG 160
L E++ LSYLD SLC + +K A+DD W YH EQ D P G
Sbjct: 187 LPQELSLKILSYLDCQSLCNATRVCRKWQKLADDDRVW---YH---MCEQHIDRKCPNCG 240
Query: 161 W 161
W
Sbjct: 241 W 241
>sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3
Length = 927
Score = 32.7 bits (73), Expect = 3.7, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 52 RKKSCNCTCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHA 111
++ +C S G A+ S E R + + ++ + + E+L E+
Sbjct: 109 KRTACPTKNSMEG-ASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKI 167
Query: 112 LSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNG 160
SYL LCR + + AND WK LY + F + + P G
Sbjct: 168 FSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPG 216
>sp|Q8CAT8|FBX48_MOUSE F-box only protein 48 OS=Mus musculus GN=Fbxo48 PE=2 SV=1
Length = 161
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 82 AATAATAVVAERGSGASMME--QLVP-EITTHALSYLDYPSLCRLSMT----NSLMRKAA 134
T + AERG S +L+P E+T S LD SLCR S T N +R
Sbjct: 14 PGTELNSADAERGKEESQRNFVELLPLEVTYKIFSQLDIQSLCRASRTCTGWNCAIR--- 70
Query: 135 NDDNAWKA 142
N+D+ WK
Sbjct: 71 NNDSLWKP 78
>sp|Q6INS1|FBXL5_XENLA F-box/LRR-repeat protein 5 OS=Xenopus laevis GN=fbxl5 PE=2 SV=1
Length = 678
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144
L PE+ + +YL+ LCR S N+ + A + W+ LY
Sbjct: 208 LPPEVMLNIFTYLNPQDLCRCSQVNTEWAQLAKTGSLWRHLY 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.128 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,981,443
Number of Sequences: 539616
Number of extensions: 3640686
Number of successful extensions: 9103
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9013
Number of HSP's gapped (non-prelim): 99
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)