Query 022429
Match_columns 297
No_of_seqs 246 out of 528
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4319 Ketosteroid isomerase 99.8 6.2E-18 1.3E-22 142.8 15.2 117 169-288 10-135 (137)
2 PF13474 SnoaL_3: SnoaL-like d 99.8 3.2E-17 6.8E-22 130.8 14.3 113 171-285 1-120 (121)
3 TIGR02246 conserved hypothetic 99.7 6.4E-15 1.4E-19 119.0 16.3 117 167-285 2-127 (128)
4 PF12937 F-box-like: F-box-lik 99.5 1.1E-14 2.4E-19 101.0 3.9 46 100-145 1-46 (47)
5 PF08332 CaMKII_AD: Calcium/ca 99.5 6.8E-13 1.5E-17 111.6 14.6 116 168-285 2-128 (128)
6 PF14534 DUF4440: Domain of un 99.4 1.9E-12 4.1E-17 100.3 12.4 101 171-276 1-107 (107)
7 PF00646 F-box: F-box domain; 99.0 4.5E-10 9.7E-15 77.5 3.1 46 99-144 2-47 (48)
8 smart00256 FBOX A Receptor for 98.9 9.2E-10 2E-14 72.8 2.9 40 103-142 1-40 (41)
9 PF11533 DUF3225: Protein of u 98.8 1.1E-07 2.4E-12 79.4 13.4 115 167-284 8-123 (125)
10 COG4875 Uncharacterized protei 98.8 2.5E-07 5.4E-12 77.4 13.3 116 167-286 35-154 (156)
11 PF13577 SnoaL_4: SnoaL-like d 98.8 3.7E-07 8E-12 73.4 14.0 112 166-279 4-126 (127)
12 PF12680 SnoaL_2: SnoaL-like d 98.7 2.4E-07 5.2E-12 70.4 12.0 96 175-275 1-100 (102)
13 KOG2997 F-box protein FBX9 [Ge 98.4 6.8E-08 1.5E-12 92.0 1.4 73 98-170 105-189 (366)
14 PF12893 Lumazine_bd_2: Putati 98.4 5.2E-06 1.1E-10 67.4 12.3 110 167-278 2-112 (116)
15 cd00781 ketosteroid_isomerase 98.3 2.7E-05 5.7E-10 62.7 13.3 110 168-282 2-114 (122)
16 cd00531 NTF2_like Nuclear tran 98.2 5.9E-05 1.3E-09 58.3 14.1 109 172-282 2-122 (124)
17 KOG0281 Beta-TrCP (transducin 98.2 9.1E-07 2E-11 85.3 2.4 53 96-148 71-127 (499)
18 KOG2120 SCF ubiquitin ligase, 98.1 1.2E-06 2.7E-11 83.6 1.9 45 100-144 98-142 (419)
19 TIGR02096 conserved hypothetic 98.0 0.00028 6E-09 57.0 13.4 103 173-281 2-117 (129)
20 KOG4341 F-box protein containi 97.9 3.5E-06 7.6E-11 83.2 1.5 55 95-149 66-121 (483)
21 TIGR02960 SigX5 RNA polymerase 97.8 0.00041 9E-09 65.4 12.9 106 169-281 204-311 (324)
22 KOG0274 Cdc4 and related F-box 97.7 1.7E-05 3.8E-10 81.1 3.0 77 92-168 100-185 (537)
23 PRK08241 RNA polymerase factor 97.7 0.00074 1.6E-08 64.4 13.5 107 169-282 214-322 (339)
24 PF06881 Elongin_A: RNA polyme 97.7 7.6E-05 1.6E-09 60.9 5.7 69 100-170 4-74 (109)
25 PF07858 LEH: Limonene-1,2-epo 97.4 0.0052 1.1E-07 51.7 12.9 99 172-273 4-106 (125)
26 PF07366 SnoaL: SnoaL-like pol 97.4 0.0047 1E-07 50.0 12.4 95 175-273 4-109 (126)
27 PRK09636 RNA polymerase sigma 97.1 0.012 2.6E-07 55.2 13.9 78 171-251 173-257 (293)
28 PF12870 Lumazine_bd: Lumazine 97.1 0.002 4.3E-08 50.4 6.7 102 168-276 6-110 (111)
29 PLN02382 probable sucrose-phos 97.0 0.018 3.9E-07 57.3 14.0 114 167-284 283-411 (413)
30 KOG3926 F-box proteins [Amino 97.0 0.00079 1.7E-08 63.4 4.0 81 90-170 192-279 (332)
31 PF02136 NTF2: Nuclear transpo 96.8 0.081 1.7E-06 42.2 13.9 104 172-279 3-114 (118)
32 cd00667 ring_hydroxylating_dio 96.6 0.11 2.4E-06 44.1 14.4 116 168-284 3-148 (160)
33 COG4538 Uncharacterized conser 96.5 0.053 1.2E-06 43.9 10.7 98 170-273 4-103 (112)
34 TIGR02957 SigX4 RNA polymerase 95.9 0.19 4.1E-06 47.0 13.3 100 170-280 165-269 (281)
35 COG3631 Ketosteroid isomerase- 95.8 0.1 2.2E-06 44.3 9.7 100 172-275 7-115 (133)
36 PRK10069 3-phenylpropionate di 95.7 0.69 1.5E-05 40.8 15.1 115 167-283 18-169 (183)
37 PRK01617 hypothetical protein; 95.6 0.089 1.9E-06 45.8 9.0 96 171-279 30-129 (154)
38 KOG4408 Putative Mg2+ and Co2+ 95.5 0.0045 9.8E-08 59.9 0.8 52 99-150 7-58 (386)
39 PF05223 MecA_N: NTF2-like N-t 95.3 0.15 3.3E-06 41.7 9.0 104 171-284 3-110 (118)
40 PRK09635 sigI RNA polymerase s 95.2 0.36 7.8E-06 45.7 12.4 99 170-281 175-273 (290)
41 PRK00183 hypothetical protein; 95.1 0.2 4.2E-06 43.9 9.4 95 171-278 30-127 (157)
42 COG4308 LimA Limonene-1,2-epox 94.9 0.17 3.6E-06 42.5 8.1 96 172-273 9-109 (130)
43 cd00780 NTF2 Nuclear transport 94.4 1.6 3.5E-05 35.2 12.8 101 173-279 8-113 (119)
44 PRK01752 hypothetical protein; 94.1 0.21 4.5E-06 43.6 7.2 96 172-281 34-131 (156)
45 COG4337 Uncharacterized protei 94.1 0.17 3.8E-06 44.5 6.6 56 230-285 144-203 (206)
46 COG3012 Uncharacterized protei 93.9 0.25 5.4E-06 42.6 7.1 93 172-277 31-125 (151)
47 PRK04233 hypothetical protein; 93.8 0.32 6.8E-06 41.2 7.6 89 171-277 34-126 (129)
48 COG4922 Uncharacterized protei 93.6 1.2 2.6E-05 37.2 10.4 97 178-282 15-112 (129)
49 PF12707 DUF3804: Protein of u 93.6 1.6 3.5E-05 36.5 11.2 106 168-284 3-120 (128)
50 COG4460 Uncharacterized protei 93.5 0.42 9.1E-06 39.7 7.6 108 170-282 8-126 (130)
51 PRK01842 hypothetical protein; 92.5 1.1 2.3E-05 39.0 9.1 92 172-278 50-144 (149)
52 PF13013 F-box-like_2: F-box-l 92.3 0.091 2E-06 43.3 2.1 33 99-131 21-53 (109)
53 PRK02250 hypothetical protein; 91.1 1.2 2.6E-05 39.2 8.0 95 171-279 29-125 (166)
54 COG4994 Uncharacterized protei 90.3 0.33 7.2E-06 40.0 3.5 24 261-284 95-118 (120)
55 PLN03215 ascorbic acid mannose 89.2 0.32 6.8E-06 48.1 3.0 37 100-136 4-41 (373)
56 PF09372 PRANC: PRANC domain; 88.2 0.39 8.4E-06 38.0 2.4 27 97-123 69-95 (97)
57 PF02982 Scytalone_dh: Scytalo 81.8 1.8 4E-05 37.9 3.8 114 165-280 4-139 (160)
58 PHA03100 ankyrin repeat protei 70.8 2.2 4.8E-05 42.0 1.5 31 98-128 446-476 (480)
59 PHA02875 ankyrin repeat protei 69.2 2.3 4.9E-05 41.2 1.2 28 98-125 385-412 (413)
60 PF07080 DUF1348: Protein of u 68.6 78 0.0017 27.3 10.4 107 167-283 12-121 (143)
61 PF10184 DUF2358: Uncharacteri 68.5 61 0.0013 26.2 11.8 99 171-279 4-113 (113)
62 PF13355 DUF4101: Protein of u 68.3 31 0.00068 28.3 7.6 18 260-277 99-116 (117)
63 KOG2104 Nuclear transport fact 62.8 78 0.0017 26.7 8.8 95 176-278 15-116 (126)
64 PHA03095 ankyrin-like protein; 61.3 5.6 0.00012 38.9 2.2 24 101-124 443-466 (471)
65 PHA02989 ankyrin repeat protei 60.0 6.4 0.00014 39.4 2.4 30 97-126 456-485 (494)
66 PHA02878 ankyrin repeat protei 55.3 7.1 0.00015 38.8 1.8 26 98-123 445-470 (477)
67 PF12883 DUF3828: Protein of u 52.5 14 0.00029 30.4 2.8 21 259-279 96-116 (120)
68 PF12647 RNHCP: RNHCP domain; 51.5 22 0.00047 28.6 3.7 22 259-280 49-70 (92)
69 TIGR03602 streptolysinS bacter 47.9 7.4 0.00016 27.8 0.4 14 50-63 21-34 (56)
70 PHA02798 ankyrin-like protein; 45.1 14 0.0003 37.0 2.1 26 97-122 461-486 (489)
71 PF05494 Tol_Tol_Ttg2: Toluene 44.8 1.2E+02 0.0027 25.9 7.7 35 244-279 101-135 (170)
72 TIGR03481 HpnM hopanoid biosyn 38.4 1.6E+02 0.0034 26.4 7.6 21 258-278 137-157 (198)
73 PF12669 P12: Virus attachment 38.0 39 0.00084 24.6 3.0 13 15-27 4-16 (58)
74 PRK15117 ABC transporter perip 33.7 2.2E+02 0.0047 25.8 7.8 47 231-278 116-165 (211)
75 PF06364 DUF1068: Protein of u 30.8 16 0.00034 32.5 -0.1 20 12-31 5-24 (176)
76 PF04280 Tim44: Tim44-like dom 29.9 1.5E+02 0.0033 24.3 5.8 27 171-197 24-50 (147)
77 KOG4353 RNA export factor NXT1 29.4 3.6E+02 0.0078 23.1 7.7 100 175-282 20-129 (139)
78 PHA02876 ankyrin repeat protei 28.8 31 0.00067 36.0 1.6 27 97-123 653-679 (682)
79 PLN03181 glycosyltransferase; 28.2 1.1E+02 0.0023 31.3 5.1 31 7-37 27-58 (453)
80 TIGR03231 anthran_1_2_B anthra 24.8 4.4E+02 0.0096 22.5 14.1 26 173-198 3-28 (155)
81 PRK03427 cell division protein 24.4 76 0.0016 31.2 3.3 21 13-33 8-30 (333)
82 PF14642 FAM47: FAM47 family 22.2 48 0.001 31.4 1.4 19 101-119 139-157 (258)
83 PF07803 GSG-1: GSG1-like prot 20.5 1.3E+02 0.0029 25.2 3.5 26 10-35 5-30 (118)
No 1
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=99.78 E-value=6.2e-18 Score=142.81 Aligned_cols=117 Identities=20% Similarity=0.326 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCCEEE
Q 022429 169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTDIAW 247 (297)
Q Consensus 169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gDvAv 247 (297)
.+|++++..|.+|++++|+++++++|++|..+ +.|.+.+..|+++|++.|+.+|... .+..+++++++|.+.||+|+
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~--f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~ 87 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVV--FPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAF 87 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEE--ecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEE
Confidence 67999999999999999999999999999533 4455778999999999999999644 46789999999999999999
Q ss_pred EEEEeeeEe--CCCc-----eEEEEEEEEe-CCeEEEEEEecCCCCCCC
Q 022429 248 VTMKTYIDI--DTGP-----FNMTNVFEFH-NGQWYMVHHHSSVMLVDG 288 (297)
Q Consensus 248 v~~~e~v~~--~~g~-----lraT~VfrR~-dG~WrlvhhHaSp~~~~~ 288 (297)
+++..++.. .+|+ .|+|.||||+ ||+||++|+| +|..++.
T Consensus 88 ~~~~~~~~~~~~dg~~~~~~~Rat~v~rK~~dg~Wk~~~dh-~~~~~~~ 135 (137)
T COG4319 88 VTALLLLTGTKKDGPPADLAGRATYVFRKEADGGWKLAHDH-IPNTDPE 135 (137)
T ss_pred EEEeeeeeccCCCCcchhheeeeEEEEEEcCCCCEEEEEec-cccCCCC
Confidence 999999986 3443 6999999997 6699999999 7665554
No 2
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=99.75 E-value=3.2e-17 Score=130.80 Aligned_cols=113 Identities=20% Similarity=0.309 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC-CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT 249 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg-~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~ 249 (297)
|+++.++|++|++++|++++.++|++| .+.+.++. ....|++++++.|+..|+...+..+++.++++...+|+|+++
T Consensus 1 V~~~~~~~~~a~~~~D~~~~~~~~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~ 78 (121)
T PF13474_consen 1 VEALLEEWIEAFERGDIDALLSLFSDD--FVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVAVVT 78 (121)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHEEEE--EEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHhCCHHHHHHhhCCC--EEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEEEEE
Confidence 678899999999999999999999977 56677654 556799999999999997666788999999999999999999
Q ss_pred EEeeeEe-CCC-----ceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429 250 MKTYIDI-DTG-----PFNMTNVFEFHNGQWYMVHHHSSVML 285 (297)
Q Consensus 250 ~~e~v~~-~~g-----~lraT~VfrR~dG~WrlvhhHaSp~~ 285 (297)
+..++.. .++ ..|.|.||+|++|+|||+|+|.|.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~S~p~ 120 (121)
T PF13474_consen 79 GEFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHWSAPA 120 (121)
T ss_dssp EEEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEEEE-B
T ss_pred EEEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEecCcC
Confidence 9987754 222 36999999999999999999999764
No 3
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=99.66 E-value=6.4e-15 Score=119.00 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCC-CceeEEEEeEEEEeC-C
Q 022429 167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQ-GVDFQVQDVRARVLT-D 244 (297)
Q Consensus 167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~-~~~vei~dl~V~v~g-D 244 (297)
+.++|+++.++|++|++++|.++++++|++|....+ .+++ .+.|+++|++.|+..+.... ...++++...+.+.| |
T Consensus 2 d~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~-~~g~-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (128)
T TIGR02246 2 DERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVT-VPGQ-VWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPD 79 (128)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEEC-CCCC-eecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCC
Confidence 356899999999999999999999999999964432 3444 78999999999998886543 234666666677655 6
Q ss_pred EEEEEEEeeeEeCC-C------ceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429 245 IAWVTMKTYIDIDT-G------PFNMTNVFEFHNGQWYMVHHHSSVML 285 (297)
Q Consensus 245 vAvv~~~e~v~~~~-g------~lraT~VfrR~dG~WrlvhhHaSp~~ 285 (297)
+|++.+..++...+ + ..++|.+|+|++|+|||+|+|.|+++
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~s~~~ 127 (128)
T TIGR02246 80 LAIVHAIQTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHNTPVR 127 (128)
T ss_pred EEEEEEEEEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccCCCCC
Confidence 99999888765422 1 36899999999999999999999864
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.51 E-value=1.1e-14 Score=101.04 Aligned_cols=46 Identities=37% Similarity=0.541 Sum_probs=41.1
Q ss_pred hhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhc
Q 022429 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH 145 (297)
Q Consensus 100 l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~ 145 (297)
+..||+||+.+||+|||+.||+++++|||+|+++++++.+||+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 3579999999999999999999999999999999999999999875
No 5
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=99.50 E-value=6.8e-13 Score=111.63 Aligned_cols=116 Identities=21% Similarity=0.300 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC--CCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCC
Q 022429 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--SGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTD 244 (297)
Q Consensus 168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP--gg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gD 244 (297)
.++|.++.++|.+|+.+||.+...++|++|. .+..| .+..+.|.+.++.-++.++... .+...+|...+|++.|+
T Consensus 2 e~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~--av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~ 79 (128)
T PF08332_consen 2 EQEIAALFDRWNDAIQTGDPETYAKLYAPDV--AVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGD 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHEEEEE--EEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHhhhcCCCe--eEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCC
Confidence 4689999999999999999999999999993 44444 6778899999999888777543 45567899999998666
Q ss_pred -EEEEEEEeeeEe-C-CC-----ceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429 245 -IAWVTMKTYIDI-D-TG-----PFNMTNVFEFHNGQWYMVHHHSSVML 285 (297)
Q Consensus 245 -vAvv~~~e~v~~-~-~g-----~lraT~VfrR~dG~WrlvhhHaSp~~ 285 (297)
.|+.+|...+.. + +| ..+.|.||+|.+|+|+++|||.|+++
T Consensus 80 ~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g~W~ivhhHsS~mP 128 (128)
T PF08332_consen 80 NAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDGKWKIVHHHSSAMP 128 (128)
T ss_dssp TEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred CEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCCeEEEEEEecCCCC
Confidence 999999987764 2 33 25899999999999999999999863
No 6
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=99.44 E-value=1.9e-12 Score=100.34 Aligned_cols=101 Identities=17% Similarity=0.372 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM 250 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~ 250 (297)
|.+++++|.+|++++|+++++++|++| .+.++|+|... |++++.+.+...+.. ...+++++..+.+.||+|++++
T Consensus 1 I~a~~~~~~~A~~~~D~~~~~~~~~~d--~~~~~~~g~~~-~~~~~l~~~~~~~~~--~~~~~~~~~~v~~~gd~a~~~~ 75 (107)
T PF14534_consen 1 IRALEEQYEDAFNAGDIDALASLYADD--FVFVGPGGTIL-GKEAILAAFKSGFAR--FSSIKFEDVEVRVLGDTAVVRG 75 (107)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHTTEEEE--EEEEETTSEEE-EHHHHHHHHHHHCEE--EEEEEEEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHhCCHHHHHhhhCCC--EEEECCCCCEe-CHHHHHHHHhhccCC--CceEEEEEEEEEEECCEEEEEE
Confidence 678999999999999999999999988 56678888654 899999988775432 3467888899999999999999
Q ss_pred EeeeEeC-CC-----ceEEEEEEEEeCCeEEE
Q 022429 251 KTYIDID-TG-----PFNMTNVFEFHNGQWYM 276 (297)
Q Consensus 251 ~e~v~~~-~g-----~lraT~VfrR~dG~Wrl 276 (297)
..++... +| ..+.|.||+|++|+|||
T Consensus 76 ~~~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 76 RWTFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 9888763 33 36899999999999997
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.96 E-value=4.5e-10 Score=77.55 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=40.7
Q ss_pred hhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhh
Q 022429 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144 (297)
Q Consensus 99 ~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~ 144 (297)
.+..||+|++.+||+|||..|++++++|||.|+++..+..+|++.+
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 4678999999999999999999999999999999999999999875
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.90 E-value=9.2e-10 Score=72.84 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=38.9
Q ss_pred ccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhh
Q 022429 103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKA 142 (297)
Q Consensus 103 LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~ 142 (297)
||+|++.+||+||++.|++++++|||.|+.+.+++.+|++
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999985
No 9
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=98.82 E-value=1.1e-07 Score=79.43 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE-eCCE
Q 022429 167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV-LTDI 245 (297)
Q Consensus 167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v-~gDv 245 (297)
...+|.++..+|++|+..+|++.|.+++.+++..+.... ++.+-|.++|++ |+.--. +.++.-++....|.. +.|.
T Consensus 8 v~aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~-~E~LyG~~aI~a-FR~~R~-~~~~~R~l~~~~itt~G~d~ 84 (125)
T PF11533_consen 8 VVAEVTAAFDRYERALMANDVDALDALFWDDPRTVRYGA-GENLYGHDAIRA-FRAARP-GGGPARTLERTVITTFGRDF 84 (125)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEET-TEEEESHHHHHH-HHHHS---TTTT-EEEEEEEEEETTTE
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECC-CccccCHHHHHH-HHhcCC-CCCCCcEEEEEEEEEecCce
Confidence 456889999999999999999999999999988877764 557889999995 333321 223344666777774 5568
Q ss_pred EEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEEEecCCC
Q 022429 246 AWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVM 284 (297)
Q Consensus 246 Avv~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHaSp~ 284 (297)
|.+....+-...++.-|=|++|.|.+++||++.-|-|.+
T Consensus 85 A~v~tef~r~~~~~~GRQsQtWvr~~~gWrIvaAHVS~~ 123 (125)
T PF11533_consen 85 ATVSTEFRRDGSGRIGRQSQTWVRFPDGWRIVAAHVSLM 123 (125)
T ss_dssp EEEEEEEEETTECCEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCceeEeEEEEEECCCCEEEEEEEEeec
Confidence 887665443322334588999999999999999999865
No 10
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=98.76 E-value=2.5e-07 Score=77.45 Aligned_cols=116 Identities=13% Similarity=0.164 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429 167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI 245 (297)
Q Consensus 167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv 245 (297)
...+|.++.++|-+++..||.+.+.+.|++|..+ ... +......+.+|++-+..++...+.-.+.-+. |+.+-+.
T Consensus 35 t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVL--LPT~Sn~vR~s~~ei~DYF~~FLk~KPqG~IdsR~--i~~gcN~ 110 (156)
T COG4875 35 TEREVAALFDRWNAALTTGDPNKVAANYAPDAVL--LPTMSNQVRSSRSEILDYFSHFLKLKPQGYIDSRK--ITLGCNN 110 (156)
T ss_pred cHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEe--ecccccccccCHHHHHHHHHHHhccCCcceeccee--EEecccc
Confidence 4456888999999999999999999999999644 222 3445567889999998888766433454444 4455666
Q ss_pred EEEEEEeeeEe-CCC--ceEEEEEEEEeCCeEEEEEEecCCCCC
Q 022429 246 AWVTMKTYIDI-DTG--PFNMTNVFEFHNGQWYMVHHHSSVMLV 286 (297)
Q Consensus 246 Avv~~~e~v~~-~~g--~lraT~VfrR~dG~WrlvhhHaSp~~~ 286 (297)
|.-.|..++.. +|. ..|+|-+|...||.|.|++||+|.+++
T Consensus 111 AlD~GtYTF~f~DGs~v~ARYtftY~w~~g~WlI~~HHSSAMPe 154 (156)
T COG4875 111 ALDAGTYTFIFTDGSNVQARYTFTYSWIDGTWLIVNHHSSAMPE 154 (156)
T ss_pred ccccceEEEEEcCCcceeEEEEEEEEecCCeEEEEecccccCCC
Confidence 76666666554 333 369999999999999999999998754
No 11
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=98.75 E-value=3.7e-07 Score=73.36 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC--CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC
Q 022429 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG--ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT 243 (297)
Q Consensus 166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg--~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g 243 (297)
....+|+++...|..++..+|.+.+.++|++|... ..++. ....|+++|++.++..+.........+....|.+.|
T Consensus 4 ~d~~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~--~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dg 81 (127)
T PF13577_consen 4 EDRAAIRDLIARYARALDTGDWEEWADLFTEDAVF--DFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDG 81 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEE--EETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHhccCCcEEE--EEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcC
Confidence 35678999999999999999999999999998533 44432 468899999998888775444445667777788899
Q ss_pred CEEEEEEEeeeEe---C-CCc-----eEEEEEEEEeCCeEEEEEE
Q 022429 244 DIAWVTMKTYIDI---D-TGP-----FNMTNVFEFHNGQWYMVHH 279 (297)
Q Consensus 244 DvAvv~~~e~v~~---~-~g~-----lraT~VfrR~dG~Wrlvhh 279 (297)
|.|.+.+...... . ++. -++++-|+|++|+|||.+.
T Consensus 82 d~A~~~~~~~~~~~~~~~g~~~~~~~g~y~~~~~r~~g~W~i~~~ 126 (127)
T PF13577_consen 82 DTATVRSYVLATHRDPDDGEPALWSGGRYTDELVREDGGWRISSR 126 (127)
T ss_dssp TEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEEEECCEEEEEEE
Confidence 9988877655432 2 221 4789999999999999875
No 12
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=98.74 E-value=2.4e-07 Score=70.40 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=75.1
Q ss_pred HHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEEeee
Q 022429 175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYI 254 (297)
Q Consensus 175 ~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~e~v 254 (297)
.++|++|++++|.+++.++|++| ++..+| +....|++++++.|+..+...+ .+.++..++...||.+++.+....
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gd~v~~~~~~~~ 75 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPD--AVFHDP-GGTLRGREAIREFFEEFFESFP--DIRFEIHDIFADGDRVVVEWTVTG 75 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEE--EEEEET-TSEEESHHHHHHHHHHHHHHEE--EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCC--EEEEeC-CCcccCHHHHHHHHHHHHhcCC--ceEEEEEEEEEcCCEEEEEEEEEE
Confidence 36899999999999999999999 445677 4458999999999999987443 455555557899999888877766
Q ss_pred Ee-C-CC--ceEEEEEEEEeCCeEE
Q 022429 255 DI-D-TG--PFNMTNVFEFHNGQWY 275 (297)
Q Consensus 255 ~~-~-~g--~lraT~VfrR~dG~Wr 275 (297)
.. . |. .++...+|+.+||++.
T Consensus 76 ~~~~~g~~~~~~~~~~~~~~dgkI~ 100 (102)
T PF12680_consen 76 TTPPTGQPISFRGCSVFRFEDGKIV 100 (102)
T ss_dssp EETTTSCEEEEEEEEEEEEETTEEE
T ss_pred EEcCCCCEEEEEEEEEEEEECCEEE
Confidence 33 2 33 3688999999999653
No 13
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=98.43 E-value=6.8e-08 Score=92.01 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=61.5
Q ss_pred chhhcccHHHHHHHhc-----CCChhhHhhhhccChHHHHHcCCchhhhhhhccccccccCCcCC-------CCChhHHH
Q 022429 98 SMMEQLVPEITTHALS-----YLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIP-------VNGWKAYY 165 (297)
Q Consensus 98 ~~l~~LP~Eil~~Ils-----yLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~~~~~~-------~~~WKelY 165 (297)
..+..||+|||++||. -||-+||-++|+|||.|+..+.++.+||.-|-+.|+....+..+ .++||++|
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mf 184 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMF 184 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHH
Confidence 3467899999999984 78899999999999999999999999999998888875444333 67899999
Q ss_pred HHHHH
Q 022429 166 AATRA 170 (297)
Q Consensus 166 ~~t~a 170 (297)
.....
T Consensus 185 l~RpR 189 (366)
T KOG2997|consen 185 LERPR 189 (366)
T ss_pred hhCcc
Confidence 87544
No 14
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=98.42 E-value=5.2e-06 Score=67.43 Aligned_cols=110 Identities=9% Similarity=0.041 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhc-cCCCceeEEEEeEEEEeCCE
Q 022429 167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFN-WEQGVDFQVQDVRARVLTDI 245 (297)
Q Consensus 167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~-~~~~~~vei~dl~V~v~gDv 245 (297)
..++|+++.+.|.+++..||.+.|.+...++..+..+..+.......++..+.....-. .....+...+.+.|.+.|++
T Consensus 2 d~~~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g~~ 81 (116)
T PF12893_consen 2 DEAAIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDGDV 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEETTE
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEECCE
Confidence 46789999999999999999999999999998777776433333345555554332210 22334566677789999999
Q ss_pred EEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEE
Q 022429 246 AWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVH 278 (297)
Q Consensus 246 Avv~~~e~v~~~~g~lraT~VfrR~dG~Wrlvh 278 (297)
|.+....... +....=.-.+.|.+|+|+|++
T Consensus 82 A~a~v~~~~~--~~~~~d~~~L~K~dg~WkIv~ 112 (116)
T PF12893_consen 82 ASAKVEYEFP--GFWFVDYFTLVKTDGGWKIVS 112 (116)
T ss_dssp EEEEEEEEEE--TEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEC--CCceEEEEEEEEECCEEEEEE
Confidence 9998886654 222222335578999999997
No 15
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=98.28 E-value=2.7e-05 Score=62.68 Aligned_cols=110 Identities=7% Similarity=0.111 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA 246 (297)
Q Consensus 168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA 246 (297)
+.+++++.++|++|++++|++++..+|++|... ..| +.+++.|++++++.|...+.... .+++........|+.+
T Consensus 2 ~~~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~--~~p~~~~~~~G~~~i~~~~~~~~~~~~--~~~~~~~~~~~~g~~~ 77 (122)
T cd00781 2 PQEMKAAVQRYVEAVNAGDPEGIVALFADDATV--EDPVGSPPRSGRAAIAAFYAQSLGGAK--RLELTGPVRASHGGEA 77 (122)
T ss_pred cHHHHHHHHHHHHHHHCCCHHHHHHHcCCCeEE--eCCCCCCCccCHHHHHHHHHHHhccCc--eEEecCceeeecCCEE
Confidence 457888999999999999999999999999533 344 45578999999999988776532 3444333345567766
Q ss_pred EEEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEecC
Q 022429 247 WVTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHSS 282 (297)
Q Consensus 247 vv~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHaS 282 (297)
.+....++...|+. +....+|+-.++ .||+.+...
T Consensus 78 ~~~~~~~~~~~g~~~~~~~~~v~~~~~d-GkI~~~~~y 114 (122)
T cd00781 78 AFAFRVEFEWEGQPCVVRVIDVMRFDAD-GRIVSMRAY 114 (122)
T ss_pred EEEEEEEEEeCCceEEEEEEEEEEECCC-ccChHHHHh
Confidence 66555454434444 456678887532 366665443
No 16
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.25 E-value=5.9e-05 Score=58.34 Aligned_cols=109 Identities=10% Similarity=0.012 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC----CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-EE
Q 022429 172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG----ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-IA 246 (297)
Q Consensus 172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg----~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-vA 246 (297)
+++..+|++++.++|.+.+..+|+++... ..|++ ....|+++|++.++............+..+.+...++ .+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~--~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 79 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYF--EPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEG 79 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEE--EEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEE
Confidence 46778899999999999999999998533 45553 5678999999988766643212222246666666544 43
Q ss_pred EEEEE-eeeEeCC-C-c----eEEEEEEEEeCCeEEEEEEecC
Q 022429 247 WVTMK-TYIDIDT-G-P----FNMTNVFEFHNGQWYMVHHHSS 282 (297)
Q Consensus 247 vv~~~-e~v~~~~-g-~----lraT~VfrR~dG~WrlvhhHaS 282 (297)
..... ..+...+ + . ...+..++|.+|+|+|...+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~ 122 (124)
T cd00531 80 VVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFR 122 (124)
T ss_pred EEEEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEe
Confidence 33322 2232222 2 1 4678889999999999988753
No 17
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.16 E-value=9.1e-07 Score=85.34 Aligned_cols=53 Identities=26% Similarity=0.428 Sum_probs=48.8
Q ss_pred ccchhhccc----HHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcccc
Q 022429 96 GASMMEQLV----PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 148 (297)
Q Consensus 96 ~~~~l~~LP----~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~ 148 (297)
.+++++.|| .||...||||||+.|||.|-.|||.|.++.+|+.+||+||.+..
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~v 127 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMV 127 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhc
Confidence 467788899 99999999999999999999999999999999999999976543
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.2e-06 Score=83.61 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=43.3
Q ss_pred hhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhh
Q 022429 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144 (297)
Q Consensus 100 l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~ 144 (297)
++.||+||++.|||.|.-++|++++-||||||+++.|+.+|..+-
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD 142 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLD 142 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeec
Confidence 778999999999999999999999999999999999999999883
No 19
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=97.98 E-value=0.00028 Score=57.04 Aligned_cols=103 Identities=8% Similarity=0.036 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-EEEEEE
Q 022429 173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-IAWVTM 250 (297)
Q Consensus 173 aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-vAvv~~ 250 (297)
++.++||+|++++|++.+.+++++|... ..|+ +....|++++++.++.+++..+...+++. ++...++ .+++..
T Consensus 2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~v~~~~ 77 (129)
T TIGR02096 2 ELAQHWIEAFNRGDMDAVLALLAEDVLY--DDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVV--VCRNDEGVRVAAEW 77 (129)
T ss_pred HHHHHHHHHHHCCCHHHHHHhcCCCeEE--EcCCCCcEeccHHHHHHHHHHHHHhCchhhceeE--EEEecCCcEEEEEE
Confidence 4678899999999999999999999533 3443 34567799999988888876544444444 4444444 555555
Q ss_pred EeeeEe---------CCCc--eEEEEEEEEeCCeEEEEEEec
Q 022429 251 KTYIDI---------DTGP--FNMTNVFEFHNGQWYMVHHHS 281 (297)
Q Consensus 251 ~e~v~~---------~~g~--lraT~VfrR~dG~WrlvhhHa 281 (297)
..+... .|.+ ++...+|+.++|+ |+.++.
T Consensus 78 ~~~g~~~g~~~g~~~~g~~~~~~~~~~~~~~~gk--I~~~~~ 117 (129)
T TIGR02096 78 TVHGTYRTAFLGLPASGKTYSIRGVTFFVFDDGK--IKRETT 117 (129)
T ss_pred EEeeeeccccCCCCCCCCEEEeeeeEEEEEeCCE--EEEEEE
Confidence 433321 1222 6788899999885 666554
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=3.5e-06 Score=83.19 Aligned_cols=55 Identities=27% Similarity=0.454 Sum_probs=47.1
Q ss_pred Cccchhh-cccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhccccc
Q 022429 95 SGASMME-QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT 149 (297)
Q Consensus 95 ~~~~~l~-~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~ 149 (297)
...+.+. .||||++++||||||-.+||+++|+|+.|+.+|.|..-|.++--..|+
T Consensus 66 ~~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~ 121 (483)
T KOG4341|consen 66 ADNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQ 121 (483)
T ss_pred hhcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcch
Confidence 3444444 699999999999999999999999999999999999999999444443
No 21
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.78 E-value=0.00041 Score=65.42 Aligned_cols=106 Identities=9% Similarity=0.057 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEE
Q 022429 169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWV 248 (297)
Q Consensus 169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv 248 (297)
.+..++.++|++|+++||++++.+++++|... .+++.+.++.|+++|...+..++.......++++. +.+.|+.+++
T Consensus 204 ~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~-~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~v 280 (324)
T TIGR02960 204 PEEQDLLERYIAAFESYDLDALTALLHEDAIW-EMPPYTLWYQGRPAIVGFIHTVCPGEGAAGMRLLP--TIANGQPAAA 280 (324)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCeEE-EcCCCCcceeCHHHHHHHHHHhcccccCCceeEEE--eeecCCceEE
Confidence 35678899999999999999999999999533 34456678999999999888773211112344433 4488887777
Q ss_pred EEEeeeEeCCC--ceEEEEEEEEeCCeEEEEEEec
Q 022429 249 TMKTYIDIDTG--PFNMTNVFEFHNGQWYMVHHHS 281 (297)
Q Consensus 249 ~~~e~v~~~~g--~lraT~VfrR~dG~WrlvhhHa 281 (297)
... ....|+ .+....+|+-+|| ||+....
T Consensus 281 ~~~--~~~~~~~~~~~~v~~~~~~dG--kI~~~~~ 311 (324)
T TIGR02960 281 MYM--RRPDAERHTAFQLHVLEIRGG--RITHVTA 311 (324)
T ss_pred EEE--EcCCCCeeeeeEEEEEEEcCC--cEEEEEE
Confidence 653 111232 3566778888888 4555443
No 22
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.73 E-value=1.7e-05 Score=81.07 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=61.3
Q ss_pred ccCCccchhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcccccccc--CCc-CC--C----CChh
Q 022429 92 ERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ--DSV-IP--V----NGWK 162 (297)
Q Consensus 92 ~~~~~~~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~--~~~-~~--~----~~WK 162 (297)
++....+++..||.|+..+||+|||.++|+.+.|||+.|+..+.++..|.+.+........ ..+ .+ . ..||
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 179 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK 179 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence 3455678899999999999999999999999999999999999999999987666555421 111 11 1 5788
Q ss_pred HHHHHH
Q 022429 163 AYYAAT 168 (297)
Q Consensus 163 elY~~t 168 (297)
..|...
T Consensus 180 s~~~~~ 185 (537)
T KOG0274|consen 180 SFYRRR 185 (537)
T ss_pred hhhhhh
Confidence 888874
No 23
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.70 E-value=0.00074 Score=64.38 Aligned_cols=107 Identities=11% Similarity=0.032 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEE
Q 022429 169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWV 248 (297)
Q Consensus 169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv 248 (297)
....++.++|++|+++||++++..++++|.... ..|++..+.|+++|++.|..++.......+.+.. ....|+.+++
T Consensus 214 ~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~-~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~--~~~~g~~v~~ 290 (339)
T PRK08241 214 PEERALLARYVAAFEAYDVDALVALLTEDATWS-MPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVP--TRANGQPAFA 290 (339)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEE-cCCCCCcccCHHHHHHHHHhhccccCCCceEEEE--eecCCCeEEE
Confidence 456778899999999999999999999994332 3344556999999999887765432212344433 3667888887
Q ss_pred EEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEecC
Q 022429 249 TMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHSS 282 (297)
Q Consensus 249 ~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHaS 282 (297)
..... ..|+. ..+-.||+-+|| ||+..+..
T Consensus 291 ~~~~~--~~g~~~~~~~v~v~~v~dG--kI~~~~~y 322 (339)
T PRK08241 291 QYMRD--PDGGGHRPWALHVLELRGG--RIAHVTSF 322 (339)
T ss_pred EEEEc--CCCCeeecceEEEEEEeCC--EEEEEEEE
Confidence 65322 12332 466778888888 55555443
No 24
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=97.70 E-value=7.6e-05 Score=60.89 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=56.5
Q ss_pred hhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhccccccccC--CcCCCCChhHHHHHHHH
Q 022429 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD--SVIPVNGWKAYYAATRA 170 (297)
Q Consensus 100 l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~~--~~~~~~~WKelY~~t~a 170 (297)
+..+|-+++.-||..+++..|.++-.-|..+... +|.||++++.++|+.... .+....+|+++|....+
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~--tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIED--TDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK 74 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchh--hHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence 4569999999999999999999999999766544 789999999999986322 23345699999998543
No 25
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.39 E-value=0.0052 Score=51.73 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429 172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK 251 (297)
Q Consensus 172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~ 251 (297)
.++.++|.+|+..+|.++..+.+.+++ .++-+.+.+.+.|++++++.++.+... ...++++.+++-..|++.+..=.
T Consensus 4 ~~vV~~F~~a~~~~D~~~a~~~~~~~d-~vy~Nvplp~i~G~~~~~~~l~~~~~~--~~~~e~~i~~iaadg~~VltER~ 80 (125)
T PF07858_consen 4 EEVVRAFLAALEDRDVDAALASLFDDD-AVYHNVPLPPIRGRDAIRAFLRGFLDS--LSGFEFDIHRIAADGDVVLTERT 80 (125)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHCEECC--EEEETTTEEEESHHHHHHHHHCCHCC--CEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhcCCC-cEEEeCCCCCcccHHHHHHHHHHHhcc--cceeEEEEEEEeecCCEEEEEeE
Confidence 467889999999999887666665554 344555677899999999987766332 34677788888889988766555
Q ss_pred eeeEeCCC----ceEEEEEEEEeCCe
Q 022429 252 TYIDIDTG----PFNMTNVFEFHNGQ 273 (297)
Q Consensus 252 e~v~~~~g----~lraT~VfrR~dG~ 273 (297)
..+...+| .+.++-||+-+||+
T Consensus 81 D~l~~~dG~~~~~~~V~GvfEv~dGk 106 (125)
T PF07858_consen 81 DVLRFADGPLRIQFPVCGVFEVRDGK 106 (125)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEETTE
T ss_pred eeeeeecCCeEEEEEEEEEEEEECCE
Confidence 55555333 36889999999994
No 26
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=97.39 E-value=0.0047 Score=50.03 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=68.5
Q ss_pred HHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEEeee
Q 022429 175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYI 254 (297)
Q Consensus 175 ~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~e~v 254 (297)
.+.|.++++++|++.+..++++| +....|+.....|.+++++.+..++...+...+++ .++...||.+++......
T Consensus 4 ~~~~~~~~n~~d~~~~~~~~~~d--~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i--~~~~~~gd~v~~~~~~~G 79 (126)
T PF07366_consen 4 RRFYEEVWNRGDLDALDELVAPD--VVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEI--EDVVAEGDRVAVRWTFTG 79 (126)
T ss_dssp HHHHHHHHHTT-GCHHHGTEEEE--EEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEE--EEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHhCCCHHHHHHhcCCC--EEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEE--EEEEEECCEEEEEEEEEE
Confidence 34555677999999999999999 34444444678899999999998888766555544 457888998777766554
Q ss_pred EeC--------CC---ceEEEEEEEEeCCe
Q 022429 255 DID--------TG---PFNMTNVFEFHNGQ 273 (297)
Q Consensus 255 ~~~--------~g---~lraT~VfrR~dG~ 273 (297)
+.. .| .++...+|+-++|+
T Consensus 80 th~g~~~g~~ptgk~v~~~~~~~~~~~~gk 109 (126)
T PF07366_consen 80 THTGEFMGIPPTGKPVEFRGMSIFRFEDGK 109 (126)
T ss_dssp EESSEBTTBE-TTEEEEEEEEEEEEEETTE
T ss_pred eecCCcCCcCCCCCEEEEEEEEEEEEECCE
Confidence 431 12 26788899999984
No 27
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=97.14 E-value=0.012 Score=55.20 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC------CCCCCHHHHHHHHHHHhccCCC-ceeEEEEeEEEEeC
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG------ELFSGYNSVIQSWQIAFNWEQG-VDFQVQDVRARVLT 243 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg------~~l~Gr~aVr~sW~~if~~~~~-~~vei~dl~V~v~g 243 (297)
-.++.++|++|+++||++++.+++++|.... .+++| .++.|++.|...+..++..... ....++ .+.+.|
T Consensus 173 ~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~-~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~--~~~vnG 249 (293)
T PRK09636 173 GAELVEAFFAALASGDLDALVALLAPDVVLH-ADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVR--LALVNG 249 (293)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhCeEEE-ecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEE--EEEECC
Confidence 4568899999999999999999999995332 22222 3367999999988877754321 122332 467899
Q ss_pred CEEEEEEE
Q 022429 244 DIAWVTMK 251 (297)
Q Consensus 244 DvAvv~~~ 251 (297)
+-|++...
T Consensus 250 ~~a~~~~~ 257 (293)
T PRK09636 250 LPGFVTAE 257 (293)
T ss_pred ceeEEEEe
Confidence 98888754
No 28
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=97.06 E-value=0.002 Score=50.37 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCC-HHHHHHHHHHHhccCCCceeEEEEeEEEEe--CC
Q 022429 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSG-YNSVIQSWQIAFNWEQGVDFQVQDVRARVL--TD 244 (297)
Q Consensus 168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~G-r~aVr~sW~~if~~~~~~~vei~dl~V~v~--gD 244 (297)
...+.++...|+.|+..||.+...++..++..- ...+.. .+.. ...+...-........ .+ +.++|... ||
T Consensus 6 ~~~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~--~~~~v~~~~~g~ 79 (111)
T PF12870_consen 6 SSTPEEVVKNFFDALKNGDYEKAYAYLSPESRE-PEKAKE-DFEQFEKQFASEMKKKYKKIG--SI--KIVEVEENTIGD 79 (111)
T ss_dssp ---HHHHHHHHHHHHCTT-HHHHHHTB--TT---SHHHHH-HHHHHHHHHHHHHHHHHHHTT--SE--EEEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHhhCccccc-hhHHHH-HHHHHHHHHHHHHHHhhhccC--ce--EEEEEEEeccCC
Confidence 345778899999999999999999887655211 000000 0000 0111111111111111 22 23333332 99
Q ss_pred EEEEEEEeeeEeCCCceEEEEEEEEeCCeEEE
Q 022429 245 IAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYM 276 (297)
Q Consensus 245 vAvv~~~e~v~~~~g~lraT~VfrR~dG~Wrl 276 (297)
.|.|+...... +|.....+..+.|+||+|+|
T Consensus 80 ~A~V~v~~~~~-~g~~~~~~~~lvk~dg~Wkv 110 (111)
T PF12870_consen 80 TATVTVKITYK-DGKEKTFTVPLVKEDGKWKV 110 (111)
T ss_dssp EEEEEEEEEET-TS-EEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEEC-CCCeeEEEEEEEEECCEEEe
Confidence 99998887653 33334556678999999997
No 29
>PLN02382 probable sucrose-phosphatase
Probab=96.97 E-value=0.018 Score=57.28 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHhCC-------hhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCC--ceeEEEEe
Q 022429 167 ATRAVVNVNAEFFNIIRERS-------LPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQG--VDFQVQDV 237 (297)
Q Consensus 167 ~t~aI~aa~~aFy~A~~agD-------ldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~--~~vei~dl 237 (297)
...+|.+.. .||+.+.+|+ ++++++...++ -+.|||.|..+ .+.+.++.++..-...++ ..+.++++
T Consensus 283 ~~~evv~~~-~~~e~W~~~~~~~~~~~~~~l~~~~~p~--~~~v~p~G~~~-~~~~~~~~~~~~~G~~~g~~~~i~vd~~ 358 (413)
T PLN02382 283 PAHEVVKFY-LFYEKWRRGEVENSDEVFQRLKSSCAPN--GVFVHPSGVEK-SLHDSIDELRSCYGDKKGKKFRVWVDRV 358 (413)
T ss_pred cHHHHHHHH-HHHHHHhcCCCCCcHHHHHHHHHhcCCC--eeEECCCcccC-CHHHHHHHHHHhhCCCCCCEEEEEEeeE
Confidence 333444333 4666666766 78888998888 57799998544 588999888888877777 67777777
Q ss_pred EEE-EeCCEEEEEEEeeeEeCCCc--eEEEEEEEEe---CCeEEEEEEecCCC
Q 022429 238 RAR-VLTDIAWVTMKTYIDIDTGP--FNMTNVFEFH---NGQWYMVHHHSSVM 284 (297)
Q Consensus 238 ~V~-v~gDvAvv~~~e~v~~~~g~--lraT~VfrR~---dG~WrlvhhHaSp~ 284 (297)
++. ...|.++|...+.=...+.. -++|.||++. .|+++..|-|.++.
T Consensus 359 ~~~~~~~~~~~v~~~e~q~~~~~~~~~~ttavl~~~~~~~~~~~W~hlheTw~ 411 (413)
T PLN02382 359 LSTQLGPDTWLVKFDKWEQSGDERKCCLTTALLTSKEDTPNGLEWMHVHQTWL 411 (413)
T ss_pred EEEEEcCCeEEEEEeeeeecCCcceeEEEEEEEeeCCCCCCCeEEEEeeeccc
Confidence 766 46779999888654322222 4789999986 58888889998764
No 30
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=96.95 E-value=0.00079 Score=63.42 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=62.4
Q ss_pred ccccCCccchhhcccHHHHHHHhcCC-ChhhHhhhhccChHHHHHcCCchhhhhhhccccccccC------CcCCCCChh
Q 022429 90 VAERGSGASMMEQLVPEITTHALSYL-DYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD------SVIPVNGWK 162 (297)
Q Consensus 90 ~~~~~~~~~~l~~LP~Eil~~IlsyL-d~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~~------~~~~~~~WK 162 (297)
++++.....-+..||.|+++.|+--| |-.||..++|+=..++.+.+++.+||+|++-.|...|- .......||
T Consensus 192 i~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWk 271 (332)
T KOG3926|consen 192 ITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWK 271 (332)
T ss_pred ccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHH
Confidence 44444445568899999999987554 78999999999999999999999999998888876321 112235699
Q ss_pred HHHHHHHH
Q 022429 163 AYYAATRA 170 (297)
Q Consensus 163 elY~~t~a 170 (297)
++|.+...
T Consensus 272 qmyf~L~r 279 (332)
T KOG3926|consen 272 QMYFQLRR 279 (332)
T ss_pred HHHHHHHH
Confidence 99998544
No 31
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=96.77 E-value=0.081 Score=42.24 Aligned_cols=104 Identities=11% Similarity=0.203 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC-CCCCHHHHHHHHHHHhccCCCceeEEEEeEEE--E-eCCEEE
Q 022429 172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE-LFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR--V-LTDIAW 247 (297)
Q Consensus 172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~-~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~--v-~gDvAv 247 (297)
....+.||+++.++|.+.+.++|.++. +..++.+. ...|+++|.+.|...-... ..+.+..+++. . .++..+
T Consensus 3 ~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~--s~~~~~~~~~~~G~~~I~~~~~~l~~~~--~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 3 NSFVQQYYQLFDSGDREGLHKLYHDDA--SFLTWNGNRPVVGREAIQEFFQSLPATG--VQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHTHGGGGGGGEEEEE--EEEEETTECEEESHHHHHHHHHHHTTSS--EEEEEEEEEEEEEEECCSEEE
T ss_pred HHHHHHHHHHHccCCHHHHHHHHcCCC--eeecCCCchhhhhHHHHHHHHhcCCCcc--cEEEecccccccccccCCcEE
Confidence 355678999999999999999997553 44677777 8999999999887665443 36667777777 3 334444
Q ss_pred EEEEeeeEeCCC--ceE--EEEEEEEeCCeEEEEEE
Q 022429 248 VTMKTYIDIDTG--PFN--MTNVFEFHNGQWYMVHH 279 (297)
Q Consensus 248 v~~~e~v~~~~g--~lr--aT~VfrR~dG~Wrlvhh 279 (297)
++..-.+..++. ..+ -|-|....+++|.+...
T Consensus 79 i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd 114 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIAND 114 (118)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEee
Confidence 444444443332 233 35555667789988753
No 32
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=96.60 E-value=0.11 Score=44.12 Aligned_cols=116 Identities=7% Similarity=-0.111 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCC---------------CCCHHHHHHHHHHHhcc-----C
Q 022429 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL---------------FSGYNSVIQSWQIAFNW-----E 227 (297)
Q Consensus 168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~---------------l~Gr~aVr~sW~~if~~-----~ 227 (297)
..+|.+++..+..++..+|.+....++++|... .+.+.+.. ..|++.+.+....+... .
T Consensus 3 ~~~I~~ll~~ya~~LD~~~~~~w~~lft~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~ 81 (160)
T cd00667 3 QAEVEQFLYREARLLDDRRWDEWLALFAEDCHY-WVPARENRERRDEDPGLELSAIYDDDRRMLEDRVVRLRTGRAWSED 81 (160)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHhhccccEE-EcceeechhhhccCCCCCeeEEEeCCHHHHHHHHHHHhcCCccccC
Confidence 457899999999999999999999999999633 22222211 13677777766555531 1
Q ss_pred C--CceeEEEEeEEEE-eCCEEEEEEEeeeEe--CCCc-----eEEEEEEEEeCCeEEEEEEecCCC
Q 022429 228 Q--GVDFQVQDVRARV-LTDIAWVTMKTYIDI--DTGP-----FNMTNVFEFHNGQWYMVHHHSSVM 284 (297)
Q Consensus 228 ~--~~~vei~dl~V~v-~gDvAvv~~~e~v~~--~~g~-----lraT~VfrR~dG~WrlvhhHaSp~ 284 (297)
+ ....-+..+.|.. .||.|-+.....+.. .++. ......++|.+|+|||.+......
T Consensus 82 ~~~~~rH~vsn~~i~~~~~d~a~~~s~~~v~~~~~~~~~~~~~g~~~d~~~r~~~~wri~~R~~~~d 148 (160)
T cd00667 82 PPSRTRHLVSNVRVLEGDGGEIEVRSNFVVVRTRLDGESDVFAGGRYDDLRRSEDGLRIASRRVVLD 148 (160)
T ss_pred CCCcceEEEccEEEEecCCCEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEEEcCCeEEEEEEEEEEe
Confidence 1 2245577777775 477777765544332 2222 234566888899999999887543
No 33
>COG4538 Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.053 Score=43.92 Aligned_cols=98 Identities=8% Similarity=0.067 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT 249 (297)
Q Consensus 170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~ 249 (297)
++....++-.+|++++|+++.++.|.||..+.- -++...-.|-++||..+...|..+ ..+. +-+.-.+.|. +|.
T Consensus 4 e~ed~vq~Ql~AYNa~Dvdaf~a~f~DD~vv~~-f~a~~~~gg~aaira~y~e~FaEp-~~~~--~ll~Rv~vGs--~Vi 77 (112)
T COG4538 4 EPEDVVQRQLAAYNAGDVDAFAAEFDDDAVVTT-FDALDGDGGTAAIRAAYGEQFAEP-APEI--SLLDRVSVGS--YVI 77 (112)
T ss_pred chhHHHHHHHHhhccccHHHHHhhcccceEEEe-cccccccCcHHHHHHHHHHHhcCC-Cccc--eeeeeEEecc--EEe
Confidence 466777888899999999999999999965443 344444568999999999999763 2233 3333333444 334
Q ss_pred EEeeeEe--CCCceEEEEEEEEeCCe
Q 022429 250 MKTYIDI--DTGPFNMTNVFEFHNGQ 273 (297)
Q Consensus 250 ~~e~v~~--~~g~lraT~VfrR~dG~ 273 (297)
-.|+++- ++|+.-+.-||.-.+|.
T Consensus 78 DHEhvtr~~g~ge~dvaciYtv~~g~ 103 (112)
T COG4538 78 DHEHVTRGTGGGERDVACIYTVVEGL 103 (112)
T ss_pred cceeeccCCCCCceeEEEEEEEeCCe
Confidence 4466653 34677777888877774
No 34
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=95.93 E-value=0.19 Score=47.03 Aligned_cols=100 Identities=11% Similarity=-0.002 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhCChhhhhhhhccCCceeee-----cCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC
Q 022429 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCI-----HASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD 244 (297)
Q Consensus 170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cv-----hPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD 244 (297)
+-+++.++|.+|+.+||++++.++.++|.....- .+...++.|++.|...+..+..... ....+ .-+.++|.
T Consensus 165 ~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~-~~~~~--~~~~vnG~ 241 (281)
T TIGR02957 165 ESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLG-PGGRV--DPVDVNGQ 241 (281)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccC-CCceE--EEEEECCC
Confidence 4567899999999999999999999999533211 2223357899999988776654221 12222 22457788
Q ss_pred EEEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEEEe
Q 022429 245 IAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHH 280 (297)
Q Consensus 245 vAvv~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhH 280 (297)
-|++... ++......++.-++| +|.+..
T Consensus 242 p~~~~~~------~~~~~~~~~~~~~~g--~I~~i~ 269 (281)
T TIGR02957 242 PAVLVRI------DGKLAYVVTFAIEGG--GIQNIY 269 (281)
T ss_pred ceEEEEe------CCcEEEEEEEEEECC--EEEEEE
Confidence 7766553 222333334444555 555443
No 35
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=95.76 E-value=0.1 Score=44.31 Aligned_cols=100 Identities=10% Similarity=0.078 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC----CCC-CHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429 172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE----LFS-GYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA 246 (297)
Q Consensus 172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~----~l~-Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA 246 (297)
.+....+|+|+.+||.+.+.+++++|... ..|+.+ ... |.+.++..+......- .....+...+.+.||--
T Consensus 7 ~~~v~~~f~a~~~GD~~~~~~l~a~D~v~--~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~--~~~~~~~~~~~~~gD~~ 82 (133)
T COG3631 7 TDLVRRYFAALSRGDLDGLLALLAEDVVW--EVPGTPPLSGTFRGGVAIRRDVFALLPRLI--EDGRFTVETVYVSGDPV 82 (133)
T ss_pred hhHHHHHHHHHhcCCHHHHHhhccCceEE--EeeCCCCCccccccchhhhhHHhhhChhhc--ccccccceEEEEcCCce
Confidence 35678899999999999999999999543 355432 223 3444444332222221 13455566677777732
Q ss_pred --EEEEEeeeEeCCCce--EEEEEEEEeCCeEE
Q 022429 247 --WVTMKTYIDIDTGPF--NMTNVFEFHNGQWY 275 (297)
Q Consensus 247 --vv~~~e~v~~~~g~l--raT~VfrR~dG~Wr 275 (297)
+.....++...|..+ ++-.|++-.||+=.
T Consensus 83 ~~v~~~~~~~~~~G~~~~~~~~~v~~vrdGrI~ 115 (133)
T COG3631 83 GAVFRTRGRVSRTGKPYENRYAFVIRVRDGRIT 115 (133)
T ss_pred EEEEEecCcccccCceeecceEEEEEEeCCEEE
Confidence 333333343344444 55667777788533
No 36
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=95.67 E-value=0.69 Score=40.80 Aligned_cols=115 Identities=6% Similarity=-0.033 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCC--------------------HHHHHHHHHHHhc
Q 022429 167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSG--------------------YNSVIQSWQIAFN 225 (297)
Q Consensus 167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~G--------------------r~aVr~sW~~if~ 225 (297)
...+|.+........+..+|.+....+|++|. .+.-| .+....| +..+++....+..
T Consensus 18 ~~~eI~~~l~~eA~lLD~~d~~~Wl~lft~D~--~Y~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~Rv~rl~~ 95 (183)
T PRK10069 18 LHHEISQFLYREARLLDEWRYDDWLALLAEDI--HYTMPMRTTVNAQRRDRREGVQTPPTMAWFDDNKDQLERRVARLET 95 (183)
T ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHhhcccc--EEEccccccccccccccccccCCCcccEEEcCCHhHHHHHHHHHhC
Confidence 34568888889999999999999999999995 33332 1212222 4555554444442
Q ss_pred ------cCCC-ceeEEEEeEEEE-e-CCEEEEEEEeeeE-e-CCC--c---eEEEEEEEEeCCeEEEEEEecCC
Q 022429 226 ------WEQG-VDFQVQDVRARV-L-TDIAWVTMKTYID-I-DTG--P---FNMTNVFEFHNGQWYMVHHHSSV 283 (297)
Q Consensus 226 ------~~~~-~~vei~dl~V~v-~-gDvAvv~~~e~v~-~-~~g--~---lraT~VfrR~dG~WrlvhhHaSp 283 (297)
.++. ....+..+.|.. . +|.|.+.....+. . .++ . -+....++|++|+|||....-..
T Consensus 96 ~~~~s~~p~~rtrH~vsNv~V~~~~~~d~a~vrS~~~v~~~~~~~~~~~~~G~y~D~l~r~~~gwrI~~R~v~l 169 (183)
T PRK10069 96 GMAWAEEPPSRLRHLITNVRVEETDIPDEFAVRSNFLLYRSRGERDEDFLVGRREDVLRREGDGWRLARRRIVL 169 (183)
T ss_pred CCccccCCCCcceEEEeeEEEEecCCCCEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEEcCCEEEEEEEEEEE
Confidence 2222 245677777764 3 4566665543332 2 221 1 25668899999999999988653
No 37
>PRK01617 hypothetical protein; Provisional
Probab=95.62 E-value=0.089 Score=45.80 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM 250 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~ 250 (297)
..++..++|.||..||++-+.+-|.++- .+ ..-+++|.+ |..-..| ..++|.+..-...++.++|..
T Consensus 30 aE~LMRSRYsAy~~~~~dYl~~T~hP~~-----r~----~~~~~~i~~-~~~~~~w---~~L~Il~~~~g~~~~~g~VeF 96 (154)
T PRK01617 30 PEHLMRSRYCAFVMKDADYLIKTWHPDC-----HA----AAWRAEIIA-GFANTEW---LGLTVFEHTWGDADNEGFVEF 96 (154)
T ss_pred HHHHHHHHHHHHHhcccchhhhcCCCcc-----Cc----chhHHHHhh-cccCCEE---eccEEEEecCCCCCceEEEEE
Confidence 4678889999999999999999886552 11 111233332 2111122 123333222223346888888
Q ss_pred EeeeEeCC--C--ceEEEEEEEEeCCeEEEEEE
Q 022429 251 KTYIDIDT--G--PFNMTNVFEFHNGQWYMVHH 279 (297)
Q Consensus 251 ~e~v~~~~--g--~lraT~VfrR~dG~Wrlvhh 279 (297)
......++ . .++=+.-|+|++|+|+.+.-
T Consensus 97 ~A~y~~~g~~~~~~~~ErS~F~r~~g~W~Yvdg 129 (154)
T PRK01617 97 VARFTEGGKTGRTAIIERSRFLKENGQWYYIDG 129 (154)
T ss_pred EEEEecCCccccceEEEeeeeEEeCCCEEecCC
Confidence 87775433 2 45667799999999998763
No 38
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.0045 Score=59.88 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=48.7
Q ss_pred hhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcccccc
Q 022429 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL 150 (297)
Q Consensus 99 ~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~ 150 (297)
.++.||..+++.|+|+|++++|.+++.|.+++.++++.+.+|++.+.++|..
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~i 58 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLLI 58 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccccc
Confidence 3678999999999999999999999999999999999999999999888775
No 39
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=95.29 E-value=0.15 Score=41.65 Aligned_cols=104 Identities=14% Similarity=0.209 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE-EeCCEEEEE
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR-VLTDIAWVT 249 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~-v~gDvAvv~ 249 (297)
..++.++|.+|+++||.++|..+-.+.. ....+.++..+..+.++..-..-.+++....+. ..++.+.+.
T Consensus 3 p~~~~~~f~~aw~~~dy~~m~~~~~~~~---------k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~~~~~~~~~~ 73 (118)
T PF05223_consen 3 PEETAEAFLEAWEKGDYAAMYELTSDPS---------KSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKKDEDDTATVP 73 (118)
T ss_dssp --HHHHHHHHHHHTT-HHHHHHTB-HHH---------HHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEECCTTEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhchhh---------hccccHHHHHHHHHHHHhhCCccceEEEeccceecCCCceEEE
Confidence 4567889999999999999998754431 112235566667777776433334556555554 455678887
Q ss_pred EEeeeEeCCCc---eEEEEEEEEeCCeEEEEEEecCCC
Q 022429 250 MKTYIDIDTGP---FNMTNVFEFHNGQWYMVHHHSSVM 284 (297)
Q Consensus 250 ~~e~v~~~~g~---lraT~VfrR~dG~WrlvhhHaSp~ 284 (297)
..-.+....|. ...+.-++|.++.|+ |++..|.+
T Consensus 74 ~~~~~~t~~g~~~~~~~~~~l~~~~~~W~-V~W~ps~I 110 (118)
T PF05223_consen 74 YTVTMDTPAGGIWTYNYTLTLVKEDDDWK-VDWDPSLI 110 (118)
T ss_dssp EEEEEEETTEEE-EEEEEEEEEEETTCEE-E---GGGT
T ss_pred EEEEEEeCCCCceeeEEEEEEEecCCcEE-EEeCccCC
Confidence 77666553332 456667788899999 56666654
No 40
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=95.19 E-value=0.36 Score=45.72 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT 249 (297)
Q Consensus 170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~ 249 (297)
+-+++.++|.+|+.+||++++.++.++|..--.+.|...++.|.+.|...+..+... + ... -+-+.++|.-|++.
T Consensus 175 ~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~~~~~~~~~~~~~G~~~v~~~~~~~~~~-~--~~~--~~~~~~ng~p~~~~ 249 (290)
T PRK09635 175 QHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSH-P--ATV--LVAQPVCGQPAVLA 249 (290)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHhhhhhcCCCcCCCCccccCHHHHHHHHHHhhcc-C--ceE--EEEeeeCCCceEEE
Confidence 346788999999999999999999999963222334345678999999877655432 1 222 23356788877765
Q ss_pred EEeeeEeCCCceEEEEEEEEeCCeEEEEEEec
Q 022429 250 MKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHS 281 (297)
Q Consensus 250 ~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHa 281 (297)
.. ++......++.-.+| +|++.+.
T Consensus 250 ~~------~~~~~~~~~~~~~~~--~I~~i~~ 273 (290)
T PRK09635 250 FV------NRALAGVLALSIEAG--KITKIHV 273 (290)
T ss_pred Ee------CCceEEEEEEEEECC--EEEEEEE
Confidence 43 222334445555555 5555443
No 41
>PRK00183 hypothetical protein; Provisional
Probab=95.06 E-value=0.2 Score=43.88 Aligned_cols=95 Identities=15% Similarity=0.243 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEE-EEeCCEEEEE
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRA-RVLTDIAWVT 249 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V-~v~gDvAvv~ 249 (297)
-+++..++|.||..+|++-+.+-|.++- .+ ....++|.+ |..--.| ..++|.+... ...++.+.|.
T Consensus 30 aE~LMRSRYsAf~~~~~dYL~~T~hP~~-----r~----~~~~~~i~~-~~~~~~W---l~LeI~~~~~~~~~~~~g~Ve 96 (157)
T PRK00183 30 AEALMRSRYSAYVLGLVDYLVATTLPAQ-----QA----GLDRAAIAA-WSAQSTW---LGLEVESSEVLGGQPEHAFVT 96 (157)
T ss_pred HHHHHHHHHHHHHhcccchhhhccCccc-----cc----ccchHHHhh-cccCCEE---eceEEEEcccCCCCCceEEEE
Confidence 4568889999999999999999986552 11 111344433 3211122 2233322111 1224688888
Q ss_pred EEeeeEeCC--CceEEEEEEEEeCCeEEEEE
Q 022429 250 MKTYIDIDT--GPFNMTNVFEFHNGQWYMVH 278 (297)
Q Consensus 250 ~~e~v~~~~--g~lraT~VfrR~dG~Wrlvh 278 (297)
-..+...++ ..++=..-|+|++|+|+.+-
T Consensus 97 F~A~y~~~g~~~~lhE~S~F~r~~g~W~YvD 127 (157)
T PRK00183 97 FTARWHDADGEHSHRERSAFVQHQGRWYFID 127 (157)
T ss_pred EEEEEecCCCccceeeeeeeeEeCCEEEecc
Confidence 887775433 24677889999999999875
No 42
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.95 E-value=0.17 Score=42.53 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429 172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK 251 (297)
Q Consensus 172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~ 251 (297)
.+..++|.+||..-|.++..+.|...+. +..++|-+.++|.+..+.-|+..+.. -..++++.+++-..|...+.
T Consensus 9 i~~V~aF~aA~~~~d~~~avr~~~~~d~-v~~n~gis~i~G~~~~ia~l~~~~~~--~~~~ef~I~riAadg~~Vlt--- 82 (130)
T COG4308 9 IRTVEAFLAALQEDDGDAAVRRLGTPDT-VYNNVGISTIHGPAETIALLRPRMAG--ILGFEFKILRIAADGGAVLT--- 82 (130)
T ss_pred HHHHHHHHHHHHhcCccHHHHHhcCCCe-eeccCCcccccchhhhhhhhccccCC--cceeEEEEEEEecccceehh---
Confidence 4678899999999999999999997654 45777888899999999988764433 35677888777666554332
Q ss_pred eeeEe--CC-C--ceEEEEEEEEeCCe
Q 022429 252 TYIDI--DT-G--PFNMTNVFEFHNGQ 273 (297)
Q Consensus 252 e~v~~--~~-g--~lraT~VfrR~dG~ 273 (297)
|+++. +| + .+.++-||+-+||+
T Consensus 83 ER~D~~~~g~~~~~~~V~GvfEV~~~r 109 (130)
T COG4308 83 ERLDARIDGPLWVQFWVCGVFEVEDGR 109 (130)
T ss_pred hhhhhhccCCcEEEEEEEEEEEEeCCE
Confidence 33322 22 2 37889999999985
No 43
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=94.38 E-value=1.6 Score=35.25 Aligned_cols=101 Identities=14% Similarity=0.269 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC-C--EEEEE
Q 022429 173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT-D--IAWVT 249 (297)
Q Consensus 173 aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g-D--vAvv~ 249 (297)
.-.+.||..+. ++.+.|.++|.++. ...+++.....|.++|.+.+...-.. ...+.+..+++.... + +-.|+
T Consensus 8 ~Fv~~YY~~l~-~~~~~L~~fY~~~s--~~~~~~~~~~~g~~~I~~~l~~lp~~--~~~~~i~~~d~q~~~~~~ili~V~ 82 (119)
T cd00780 8 AFVQQYYSIFD-NNREGLHRLYGDTS--MLSREGMKQVTGRDAIVEKLSSLPFQ--KTKHKITTVDSQPTPSGGVIVMVT 82 (119)
T ss_pred HHHHHHHHHHh-cCHHHHHhhcCCCc--EEEECCceEecCHHHHHHHHHhCCCc--ceEEEEEEEeeeEcCCCCEEEEEE
Confidence 34568899998 68999999999985 44777536788999999965432211 346777777777654 3 34444
Q ss_pred EEeeeEeCCCc--eEEEEEEEEeCCeEEEEEE
Q 022429 250 MKTYIDIDTGP--FNMTNVFEFHNGQWYMVHH 279 (297)
Q Consensus 250 ~~e~v~~~~g~--lraT~VfrR~dG~Wrlvhh 279 (297)
|.-... ++.. +.-|-+..+.+++|.+...
T Consensus 83 G~~~~~-~~~~~~F~q~F~L~~~~~~~~I~nD 113 (119)
T cd00780 83 GSLKLD-EQPPRKFSQTFVLAPQNGGYFVLND 113 (119)
T ss_pred EEEEEC-CCCceeEeEEEEEEecCCeEEEEee
Confidence 543332 2223 3345566667899998754
No 44
>PRK01752 hypothetical protein; Provisional
Probab=94.07 E-value=0.21 Score=43.65 Aligned_cols=96 Identities=9% Similarity=0.203 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429 172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK 251 (297)
Q Consensus 172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~ 251 (297)
+++..++|.||..+|++-+.+-|.++ -......+++.+ |..-..| ..++|.+.. ...++.++|.-.
T Consensus 34 E~LMRSRYSAy~~~~~dYL~~T~hp~---------~r~~~~~~~~~~-~~~~~~W---~~LeI~~~~-~~~~~~g~VeF~ 99 (156)
T PRK01752 34 EQLMRSRYAAYVLKNIDYIVETTVPS---------QQTLLDPAALQT-WAENTTW---LGLEILAHE-SLTKIHSAVEFK 99 (156)
T ss_pred HHHHHHHHHHHHhcccchhhhcCCcc---------cccCcCHHHHhc-cccCCeE---eeeEEEecc-CCCCceEEEEEE
Confidence 67889999999999999999988655 211112344432 3211122 133333322 233468888888
Q ss_pred eeeEeCCC--ceEEEEEEEEeCCeEEEEEEec
Q 022429 252 TYIDIDTG--PFNMTNVFEFHNGQWYMVHHHS 281 (297)
Q Consensus 252 e~v~~~~g--~lraT~VfrR~dG~WrlvhhHa 281 (297)
.....++. .++=..-|+|++|+|..+.-+.
T Consensus 100 A~y~~~g~~~~~hE~S~F~r~~g~W~YvDG~~ 131 (156)
T PRK01752 100 AIFQGEEGEQAHHERSLFVKIDNRWYFVDPTV 131 (156)
T ss_pred EEEecCCCccccchhhhheeccCCEEEecCCC
Confidence 77764332 3566778999999999987543
No 45
>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.06 E-value=0.17 Score=44.49 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=45.7
Q ss_pred ceeEEEEeEEEEeCCEEEEEEEeeeEeCCCc---eEEEEEEEEe-CCeEEEEEEecCCCC
Q 022429 230 VDFQVQDVRARVLTDIAWVTMKTYIDIDTGP---FNMTNVFEFH-NGQWYMVHHHSSVML 285 (297)
Q Consensus 230 ~~vei~dl~V~v~gDvAvv~~~e~v~~~~g~---lraT~VfrR~-dG~WrlvhhHaSp~~ 285 (297)
.+++++.-.|.+.||+|..+|.-.+..+.|. +--|.-|.|. +|.-||+.||+|.|-
T Consensus 144 r~v~ikNAAi~I~Gd~AtTtGNV~itdk~G~~TtVDKtWaFkKdd~G~lRIv~HHSSLPY 203 (206)
T COG4337 144 REVRIKNAAIYIDGDLATTTGNVFITDKKGQETTVDKTWAFKKDDQGQLRIVLHHSSLPY 203 (206)
T ss_pred eeeeeeceeEEEeccccceeccEEEEcCCCceEEeeceeeeeccCCCcEEEEEecCCCCc
Confidence 3788999999999999999998777643332 4558899995 799999999999874
No 46
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.85 E-value=0.25 Score=42.63 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429 172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK 251 (297)
Q Consensus 172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~ 251 (297)
.++...+|.|+.-+|++-+.+-| ||.-+...-++++++. |.......++|......-..+.+.|.-.
T Consensus 31 e~LMRSRy~Ayvlkn~dYli~Tw---------hPs~qa~~~~~~l~~~----~~~t~wlGL~I~~h~~~~~~~~~~VeF~ 97 (151)
T COG3012 31 EALMRSRYCAYVLKNADYLIKTW---------HPSCQAALDRAELIAG----FAHTEWLGLTIIEHTGLGAPNHGFVEFV 97 (151)
T ss_pred HHHHHHHHHHHHhcCchheeecc---------CCccccccchhHhhcc----cccceEeeEEEEEeccCCCCcceeEEEE
Confidence 45778999999999999888777 5543333335566542 3333223344433333333568999999
Q ss_pred eeeEeCC--CceEEEEEEEEeCCeEEEE
Q 022429 252 TYIDIDT--GPFNMTNVFEFHNGQWYMV 277 (297)
Q Consensus 252 e~v~~~~--g~lraT~VfrR~dG~Wrlv 277 (297)
.+....+ +..+=...|+|++|+|..+
T Consensus 98 A~f~~~~~~~a~~ErSrFvk~ngrWyyi 125 (151)
T COG3012 98 ARFKGGGKTGAHHERSRFVKINGRWYYI 125 (151)
T ss_pred EEEccCCccchhhhhhhheEECCEEEEE
Confidence 8887533 2356677999999999976
No 47
>PRK04233 hypothetical protein; Provisional
Probab=93.81 E-value=0.32 Score=41.24 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe-CCEEEEE
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL-TDIAWVT 249 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~-gDvAvv~ 249 (297)
-+++..+.|.||..||++-+.+-|.++- .|. .+...|. ....-..++| ++.... +|.++|.
T Consensus 34 aE~LMRSRYsAfv~~~~dYL~~T~hp~~-----r~~--------~~~~~~~---~~~~Wl~LeI--~~~~~~~~~~g~Ve 95 (129)
T PRK04233 34 AETLMRARYSAYVRRDADYLLASWHPST-----RPA--------ELSLDEG---GRTTWLGLTV--QRTLETGADTAEVV 95 (129)
T ss_pred HHHHHHHHHHHHHhCccchhhhccCccc-----Cch--------hhhcCcc---cCCEEeeeEE--EEccCCCCceEEEE
Confidence 4567889999999999999888885552 111 2222121 1111112333 333332 4788888
Q ss_pred EEeeeEeCCC---ceEEEEEEEEeCCeEEEE
Q 022429 250 MKTYIDIDTG---PFNMTNVFEFHNGQWYMV 277 (297)
Q Consensus 250 ~~e~v~~~~g---~lraT~VfrR~dG~Wrlv 277 (297)
-......+++ .++=..-|+|++|+|+.+
T Consensus 96 F~A~y~~~~~~~~~~hE~S~F~r~~g~W~Yv 126 (129)
T PRK04233 96 FLARYRIGGGSAVRMTEHSRFVREDGRWYYL 126 (129)
T ss_pred EEEEEEcCCCceeEEEEeeeEEEECCEEEEe
Confidence 8887764433 356678999999999875
No 48
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=1.2 Score=37.25 Aligned_cols=97 Identities=12% Similarity=0.214 Sum_probs=70.3
Q ss_pred HHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEEeeeEeC
Q 022429 178 FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDID 257 (297)
Q Consensus 178 Fy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~e~v~~~ 257 (297)
+..+|++|-.+.-.+.+-|. +. =|. ...-.|++.+.+-+..+|.-.+ +.+.+-+++...||+.+++....+..+
T Consensus 15 y~~~~~~g~veka~a~~vd~-Yi--QHn-p~vpdGk~~fv~fFt~ffk~~P--~~~~kiVr~iadGdLV~vh~hqt~~~p 88 (129)
T COG4922 15 YRTLFEAGEVEKADAYLVDR-YI--QHN-PMVPDGKDGFVRFFTEFFKEKP--RISTKIVRVIADGDLVTVHYHQTVSEP 88 (129)
T ss_pred HHHHHHCCCHHHhhhhhhhH-HH--hcC-CCCCCchHHHHHHHHHHHHhCc--cccceeeEEeccCCEEEEEEeeeeCCC
Confidence 44577778888888887733 22 243 3356799999999999997653 467788888999999999888877643
Q ss_pred CC-ceEEEEEEEEeCCeEEEEEEecC
Q 022429 258 TG-PFNMTNVFEFHNGQWYMVHHHSS 282 (297)
Q Consensus 258 ~g-~lraT~VfrR~dG~WrlvhhHaS 282 (297)
|. ....+..||-.+| +|+-|=.+
T Consensus 89 g~~~~v~~DtfR~ddg--kivEHWDv 112 (129)
T COG4922 89 GSYTTVTFDTFRIDDG--KIVEHWDV 112 (129)
T ss_pred CcceeEEEEEEEeeCC--ceeeccch
Confidence 43 3567788988888 77655433
No 49
>PF12707 DUF3804: Protein of unknown function (DUF3804); InterPro: IPR024525 Structural alignments indicate that this family of functionally uncharacterised proteins carry an NTF2-fold with a hydrophobic cavity. Family members also contain two highly conserved tryptophan residues toward their C-terminal ends.; PDB: 3HZP_A.
Probab=93.61 E-value=1.6 Score=36.51 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhCChhhhhhhhccC--CceeeecCCCCCCCCHHHHHHHHHHHhccCCCc-e-eEEEE-eEEEE-
Q 022429 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNA--DYVKCIHASGELFSGYNSVIQSWQIAFNWEQGV-D-FQVQD-VRARV- 241 (297)
Q Consensus 168 t~aI~aa~~aFy~A~~agDldam~alWadd--d~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~-~-vei~d-l~V~v- 241 (297)
.++|.++++.|.. .+.|..+..+. .+...+.|.|.++. .++++.++..+.-+ + -++.. .+..+
T Consensus 3 ~~~i~~li~~fa~------~~~~~sFl~~N~T~DFLfIRPSGNPI~-----a~G~~~M~~s~Dvv~e~sEl~kIhrlE~l 71 (128)
T PF12707_consen 3 KQEIESLIEEFAN------REQMKSFLIDNATPDFLFIRPSGNPID-----AKGFEGMMDSGDVVQESSELIKIHRLEFL 71 (128)
T ss_dssp HHHHHHHHHHHSS------TTTTTTHHHHHB-TT--EE-TTS-EE------HHHHHHHHTSSSEEEEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHhhC------HHHhhhhhhcCCCcceEEEcCCCCccc-----hhHHHHhhccCceeeeehheeeeeeEEec
Confidence 4567777776643 33344444332 23556889887775 24566666444211 1 22222 23456
Q ss_pred eCCEEEE--EEEeeeEeCC----CceEEEEEEEEeCCeEEEEEEecCCC
Q 022429 242 LTDIAWV--TMKTYIDIDT----GPFNMTNVFEFHNGQWYMVHHHSSVM 284 (297)
Q Consensus 242 ~gDvAvv--~~~e~v~~~~----g~lraT~VfrR~dG~WrlvhhHaSp~ 284 (297)
.+|+|+. +..+.+.-.| ..-.+|.+|.|.||.|++.--|-|..
T Consensus 72 ~~~~a~~~ftl~~~FsYKG~~NdDl~~~T~IFKKvdg~Wk~~WmqRSsG 120 (128)
T PF12707_consen 72 SDDWAMCAFTLGEKFSYKGTPNDDLSTYTSIFKKVDGVWKISWMQRSSG 120 (128)
T ss_dssp SSSEEEEEEEEEEEEEETTEEEEEB-EEEEEEEEETTEEEEEEEEE--S
T ss_pred CCCeEEEEEEecceeEecCCcCCchhHHHHHHhhcCCeEEEEEEeeccC
Confidence 4556554 4556654333 33589999999999999999998754
No 50
>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.51 E-value=0.42 Score=39.73 Aligned_cols=108 Identities=15% Similarity=0.247 Sum_probs=72.6
Q ss_pred HHHHHHHH---HHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE-eCCE
Q 022429 170 AVVNVNAE---FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV-LTDI 245 (297)
Q Consensus 170 aI~aa~~a---Fy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v-~gDv 245 (297)
+|.-+..+ |..+-.++-+|++++-++.| .+++-|+|.. -.++++.+.++.--...++..+.+++++... ..|.
T Consensus 8 EiihaH~ai~dWl~~~~adtldal~arfaed--ftMitP~Gvi-LD~~Alg~~frs~racrpGl~I~ie~i~l~a~~~dg 84 (130)
T COG4460 8 EIIHAHRAIVDWLVAARADTLDALRARFAED--FTMITPSGVI-LDRDALGDHFRSSRACRPGLAISIEDIRLGAQTEDG 84 (130)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHhcC--ceEecCCceE-eccHHHHHHHHhccCCCCCeEEEEecccccccCCCc
Confidence 44444444 44444455677777778777 6789998854 4699999987766666678889999988774 5668
Q ss_pred EEEEEEeee-EeCC--Cce-EEEEEEEEe-CC--eEEEEEEecC
Q 022429 246 AWVTMKTYI-DIDT--GPF-NMTNVFEFH-NG--QWYMVHHHSS 282 (297)
Q Consensus 246 Avv~~~e~v-~~~~--g~l-raT~VfrR~-dG--~WrlvhhHaS 282 (297)
|++.+.|.- ...+ .+. ..|.+..|. .| .|| |-|.+
T Consensus 85 a~l~YrE~Q~~a~g~se~~r~stv~l~r~~~grv~WR--HLhET 126 (130)
T COG4460 85 AVLLYREAQLRAGGHSERQRSSTVTLSRSAPGRVEWR--HLHET 126 (130)
T ss_pred eeeeehHhhhhccCccceeeeeEEEEeecCCCceEee--ehhhh
Confidence 888888764 3222 223 467788886 45 466 55543
No 51
>PRK01842 hypothetical protein; Provisional
Probab=92.51 E-value=1.1 Score=38.99 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429 172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK 251 (297)
Q Consensus 172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~ 251 (297)
+++..+.|.||..||++-+.+-|.++- .+.. + ..+++. .| --.|. .++|..... ..++.++|...
T Consensus 50 E~LMRSRYSAy~l~~~dYL~~T~hP~~-----r~~~--~-~~~~~~-~~--~~~Wl---gLeI~~~~~-~~~~~G~VeF~ 114 (149)
T PRK01842 50 LELMRSRYSAYVLGATDYLRATWDPST-----CPAD--L-DADPAA-AD--APRWL---GLAIKRHAQ-LDATHAEVEFV 114 (149)
T ss_pred HHHHHHHHHHHHhcccchhhhccCccc-----Cccc--c-Chhhhh-cc--CCEec---ceEEEEccC-CCCceEEEEEE
Confidence 467788999999999999999986662 1111 1 122222 22 11221 233322221 23468888888
Q ss_pred eeeEeCCC--ceEEEEEEEEe-CCeEEEEE
Q 022429 252 TYIDIDTG--PFNMTNVFEFH-NGQWYMVH 278 (297)
Q Consensus 252 e~v~~~~g--~lraT~VfrR~-dG~Wrlvh 278 (297)
.....+|. .++=+.-|+|+ +|+|+.+-
T Consensus 115 A~y~~~g~~~~lhErS~F~r~~~G~W~YvD 144 (149)
T PRK01842 115 ARYKVGGRAHRLHETSRFVRDEQGRWRYVD 144 (149)
T ss_pred EEEecCCCeEEEEEeeeeEECCCCeEEEeC
Confidence 77754333 36668899997 89998764
No 52
>PF13013 F-box-like_2: F-box-like domain
Probab=92.31 E-value=0.091 Score=43.29 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=29.6
Q ss_pred hhhcccHHHHHHHhcCCChhhHhhhhccChHHH
Q 022429 99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR 131 (297)
Q Consensus 99 ~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~ 131 (297)
-+..||.||+..||.|++..+|+.++.+|+.++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r 53 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYR 53 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999443
No 53
>PRK02250 hypothetical protein; Provisional
Probab=91.11 E-value=1.2 Score=39.25 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM 250 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~ 250 (297)
.+++..+.|-|+.-||++-+.+-|.++ -......+.+. .|. ...| ..++|.+..-...++.++|+.
T Consensus 29 pE~LMRSRYsAyv~g~~~Yl~~T~hP~---------~r~~~~~e~i~-~~~-~~~w---~~LeI~~~~~g~~~~~g~VeF 94 (166)
T PRK02250 29 PEQLMRSRYSAHVLGLVDYVVETYHPS---------CNAEEQREGIA-ESI-HSDW---LKLEVIKTEAGSTPNEGFVEF 94 (166)
T ss_pred hhhcchhHhHHHHhcccceeecccCcc---------cCChhhHHHHh-hhh-hcee---eccEEEEecCCCCCceEEEEE
Confidence 456788999999999988777666444 21111122222 221 1122 233333322223457899998
Q ss_pred EeeeEeCCC--ceEEEEEEEEeCCeEEEEEE
Q 022429 251 KTYIDIDTG--PFNMTNVFEFHNGQWYMVHH 279 (297)
Q Consensus 251 ~e~v~~~~g--~lraT~VfrR~dG~Wrlvhh 279 (297)
..+...+|. .++=..-|+|++|+|+.+--
T Consensus 95 ~A~y~~~g~~~~~~E~S~F~r~~g~W~Yvdg 125 (166)
T PRK02250 95 KAYFDEEGKRYCLEERSRFLKENGLWYYIDG 125 (166)
T ss_pred EEEEecCCCEEEEEEEEEEEeeCCEEEecCC
Confidence 888764443 35667789999999998863
No 54
>COG4994 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.29 E-value=0.33 Score=39.99 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=20.6
Q ss_pred eEEEEEEEEeCCeEEEEEEecCCC
Q 022429 261 FNMTNVFEFHNGQWYMVHHHSSVM 284 (297)
Q Consensus 261 lraT~VfrR~dG~WrlvhhHaSp~ 284 (297)
.+-.++|++.+|+|+|+.||.+.+
T Consensus 95 t~Rs~IW~~~~g~WK~vfHQGT~I 118 (120)
T COG4994 95 TRRSTIWRRTAGGWKIVFHQGTVI 118 (120)
T ss_pred eeeeeeeeeeCCcEEEEEecceEE
Confidence 455689999999999999998764
No 55
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=89.15 E-value=0.32 Score=48.11 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=33.2
Q ss_pred hhcccHHHHHHHhcCC-ChhhHhhhhccChHHHHHcCC
Q 022429 100 MEQLVPEITTHALSYL-DYPSLCRLSMTNSLMRKAAND 136 (297)
Q Consensus 100 l~~LP~Eil~~IlsyL-d~~sL~~~s~vcr~~~~~a~d 136 (297)
..+||+|||..|...| ...|+.|...|||.|+..+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 5679999999999999 788999999999999977553
No 56
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=88.20 E-value=0.39 Score=37.98 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.0
Q ss_pred cchhhcccHHHHHHHhcCCChhhHhhh
Q 022429 97 ASMMEQLVPEITTHALSYLDYPSLCRL 123 (297)
Q Consensus 97 ~~~l~~LP~Eil~~IlsyLd~~sL~~~ 123 (297)
.+.+..||.||-.+||+||+-.||..+
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 367888999999999999999999764
No 57
>PF02982 Scytalone_dh: Scytalone dehydratase; InterPro: IPR004235 Scytalone dehydratase is a member of the group of enzymes involved in fungal melanin biosynthesis. It was first identified in a phytopathogenic fungus, Magnaporthe grisea (Rice blast fungus), which causes rice blast disease. Scytalone dehydratase is a molecular target of inhibitor design efforts aimed at protecting rice plants from fungal disease [, ].; GO: 0030411 scytalone dehydratase activity, 0006582 melanin metabolic process; PDB: 4STD_A 3STD_A 6STD_A 7STD_C 1STD_A 5STD_C 1IDP_B 2STD_A.
Probab=81.78 E-value=1.8 Score=37.87 Aligned_cols=114 Identities=8% Similarity=0.002 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceee--ecC-CCCCCCCHHHHHHHHH--HHhccCCCc--eeEEEEe
Q 022429 165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKC--IHA-SGELFSGYNSVIQSWQ--IAFNWEQGV--DFQVQDV 237 (297)
Q Consensus 165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~c--vhP-gg~~l~Gr~aVr~sW~--~if~~~~~~--~vei~dl 237 (297)
|...-++.++.-.|.+.+.++|-++|.++.++...+=+ +.+ -.+.. -.+...+-|- ..+.+. .+ +.-+...
T Consensus 4 f~Dyl~~~~~~feWAdsYD~KDW~RL~~~lAPtl~vDY~~v~~~~we~m-~a~eFvam~s~~~~LGd~-~lkTQHllGa~ 81 (160)
T PF02982_consen 4 FEDYLGCQAAAFEWADSYDTKDWDRLRKILAPTLRVDYRSVLGKLWEAM-PADEFVAMASSPHFLGDP-LLKTQHLLGAS 81 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-HHHHHTTEEEEEEEEEHHHHSEEEEEE-EHHHHHHHHTSTTTTT-T-TEEE--EEEEE
T ss_pred HHHHHHHHHHHHHHHhhhccccHHHHHHhhCCeEEEEHHHhhhhHHhhC-CHHHHHHHHcCccccCCc-chhheeecccc
Confidence 55566788889999999999999999999999854311 111 11111 1334444331 122222 11 1223332
Q ss_pred EE-EEeCCEEEEEEEeeeEe----CC----------CceEEEEEEEEeCCeEEEEEEe
Q 022429 238 RA-RVLTDIAWVTMKTYIDI----DT----------GPFNMTNVFEFHNGQWYMVHHH 280 (297)
Q Consensus 238 ~V-~v~gDvAvv~~~e~v~~----~~----------g~lraT~VfrR~dG~WrlvhhH 280 (297)
.. .++++-.++.-.-++.- ++ +.-..|.-|+|.||.||+.---
T Consensus 82 ~we~vsd~eiig~hQlRaaHqry~D~~~~~V~~kGh~h~~~~h~Y~KvdG~WK~agl~ 139 (160)
T PF02982_consen 82 KWEKVSDTEIIGHHQLRAAHQRYTDDSLTEVKAKGHGHGTNTHWYRKVDGVWKFAGLK 139 (160)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEESSTT--SEEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEecCCEEEEEEEEEeeeeeeeCCCccEEEeeeccceeEEEEEEEeCCEEEEeeec
Confidence 22 24555555544433321 21 1235688999999999997654
No 58
>PHA03100 ankyrin repeat protein; Provisional
Probab=70.82 E-value=2.2 Score=41.97 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=26.1
Q ss_pred chhhcccHHHHHHHhcCCChhhHhhhhccCh
Q 022429 98 SMMEQLVPEITTHALSYLDYPSLCRLSMTNS 128 (297)
Q Consensus 98 ~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr 128 (297)
+.+..||+||..+||+||+-.||-.+-.-+.
T Consensus 446 ~~w~~lP~Eik~~Il~~l~~~dl~~~~~~~~ 476 (480)
T PHA03100 446 TYWNILPIEIKYKILEYLSNRDLKSLIENFT 476 (480)
T ss_pred CchhhCcHHHHHHHHHhCCHHHHHHHHhhhc
Confidence 4567799999999999999999988765443
No 59
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.25 E-value=2.3 Score=41.18 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=24.3
Q ss_pred chhhcccHHHHHHHhcCCChhhHhhhhc
Q 022429 98 SMMEQLVPEITTHALSYLDYPSLCRLSM 125 (297)
Q Consensus 98 ~~l~~LP~Eil~~IlsyLd~~sL~~~s~ 125 (297)
+.+..||+||..+||+||+-.||..+.+
T Consensus 385 ~~w~~LP~Eik~~Il~~l~~~dL~~~~~ 412 (413)
T PHA02875 385 SKWNILPHEIKYLILEKIGNKDIDIAIM 412 (413)
T ss_pred cchhcCcHHHHHHHHHHhccchhhhhcc
Confidence 4566799999999999999999987654
No 60
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=68.56 E-value=78 Score=27.33 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-E
Q 022429 167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-I 245 (297)
Q Consensus 167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-v 245 (297)
+.+.|+.+++ |.+.+|.+.+..-|+.|- .=.-..+.+.|+++|.+-... .+..-.++.+.-.--.+.|+ +
T Consensus 12 A~~KVr~AEd----aWNsrdP~~ValaYT~Ds---~WRNR~eF~~GR~~I~~FLtr--KW~rE~~YrLiKELwaf~~nRI 82 (143)
T PF07080_consen 12 AIQKVRAAED----AWNSRDPEKVALAYTPDS---VWRNRDEFLTGREEIVAFLTR--KWERELDYRLIKELWAFTDNRI 82 (143)
T ss_dssp HHHHHHHHHH----HHTTT-HHHHHTTEEEEE---EEEETTEEE-SHHHHHHHHHH--HHHHSEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHh----ccccCChhHheeccCCCC---cccCcccccCcHHHHHHHHHH--HHHHhhhhhhHHhhhhccCCeE
Confidence 3455666665 889999999999999882 123346688999999984322 23333455544443445666 7
Q ss_pred EEEEEEeeeEeCCCceEE--EEEEEEeCCeEEEEEEecCC
Q 022429 246 AWVTMKTYIDIDTGPFNM--TNVFEFHNGQWYMVHHHSSV 283 (297)
Q Consensus 246 Avv~~~e~v~~~~g~lra--T~VfrR~dG~WrlvhhHaSp 283 (297)
||-...|--+..|.++|+ ..-|+..+.| +|...|+|.
T Consensus 83 AVRF~YE~~d~~gqW~RsyGnEnWeFd~~G-lM~~R~aSi 121 (143)
T PF07080_consen 83 AVRFAYEWHDDSGQWFRSYGNENWEFDEDG-LMRRRHASI 121 (143)
T ss_dssp EEEEEEEEE-TTS-EEEEEEEEEEEE-TTS--EEEEEEEE
T ss_pred EEEEeEEEEcCCCCEEecccccccccCCCc-cHHHhhccc
Confidence 887666655434455543 4455554322 566777764
No 61
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=68.54 E-value=61 Score=26.17 Aligned_cols=99 Identities=9% Similarity=0.105 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHH---HHHHhc-cCCCceeEEEEeEEEEeCCEE
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQS---WQIAFN-WEQGVDFQVQDVRARVLTDIA 246 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~s---W~~if~-~~~~~~vei~dl~V~v~gDvA 246 (297)
++.+-+.+-+.| .|+.+ ..+|++| +....|-. .++|.+.++.. .+.+.. ... ..+++..++...++-
T Consensus 4 ~~~Lr~D~~~~f-~~~~~--~~iY~~d--v~F~Dp~~-~f~g~~~Y~~~~~~l~~l~~~~~~--~~~~~v~~i~~~~~~- 74 (113)
T PF10184_consen 4 IRTLREDLPRFF-TGDLD--YSIYDED--VVFIDPIV-SFKGLDRYKRNLWALRFLGRLFFS--DPSLEVLSIEQDGED- 74 (113)
T ss_pred HHHHHHHHHHHh-cCCCC--hhhcCCC--eEEECCCC-ceecHHHHHHHHHHHHHHHhhccC--CcEEEEEEEEECCCC-
Confidence 444445555555 66666 4699988 67788865 68898887765 322222 122 344555556665553
Q ss_pred EEEEEeeeEe-C----CC--ceEEEEEEEEeCCeEEEEEE
Q 022429 247 WVTMKTYIDI-D----TG--PFNMTNVFEFHNGQWYMVHH 279 (297)
Q Consensus 247 vv~~~e~v~~-~----~g--~lraT~VfrR~dG~Wrlvhh 279 (297)
.+..++++.. . .. .+-.+.+|.-.+.+ +|..|
T Consensus 75 ~I~~rW~~~g~~~l~w~p~~~~~G~S~~~ln~~g-~I~~H 113 (113)
T PF10184_consen 75 TIRARWRLRGVPRLPWRPRISFDGTSTYTLNSDG-LIYRH 113 (113)
T ss_pred EEEEEEEEEEEeCCCcCCcEEEEEEEEEEECCCC-cEEeC
Confidence 5566666654 1 11 25678888887655 66544
No 62
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=68.33 E-value=31 Score=28.33 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=16.1
Q ss_pred ceEEEEEEEEeCCeEEEE
Q 022429 260 PFNMTNVFEFHNGQWYMV 277 (297)
Q Consensus 260 ~lraT~VfrR~dG~Wrlv 277 (297)
.++++..+.|.+|+|||.
T Consensus 99 ~~~vrY~L~r~~~~WkI~ 116 (117)
T PF13355_consen 99 TLRVRYELVRQNGQWKIT 116 (117)
T ss_pred cEEEEEEEEEcCCEEEec
Confidence 378999999999999985
No 63
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.82 E-value=78 Score=26.72 Aligned_cols=95 Identities=12% Similarity=0.379 Sum_probs=60.6
Q ss_pred HHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHH-hccCCCceeEEEEeEEE--EeCC-EEEEEEE
Q 022429 176 AEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIA-FNWEQGVDFQVQDVRAR--VLTD-IAWVTMK 251 (297)
Q Consensus 176 ~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~i-f~~~~~~~vei~dl~V~--v~gD-vAvv~~~ 251 (297)
+.+|.-|. .|-..+.++|.+. ++.-=.|..+.|.++|.+-.... |. .....+..++-. ..|. +.+|.|.
T Consensus 15 qhYY~~FD-~dR~ql~~lY~~~---S~LTfEGqq~qG~~~IveKl~sLpFq---kiqh~IttvD~QPt~~g~ilv~V~G~ 87 (126)
T KOG2104|consen 15 QHYYSLFD-NDRSQLGALYIDT---SMLTFEGQQIQGKDAIVEKLTSLPFQ---KIQHSITTVDSQPTPDGGILVMVVGQ 87 (126)
T ss_pred HHHHHHhc-CchhHhhhhhccc---ceeeEcchhhcchHHHHHHHhcCChh---hhhceeeecccccCCCCcEEEEEeee
Confidence 44555555 6889999999888 34444688999999998854322 11 122233333333 3344 5777777
Q ss_pred eeeEeCCCceEEEEEEEEe-C--CeEEEEE
Q 022429 252 TYIDIDTGPFNMTNVFEFH-N--GQWYMVH 278 (297)
Q Consensus 252 e~v~~~~g~lraT~VfrR~-d--G~Wrlvh 278 (297)
-.++ ++...+..+||... + |.|...+
T Consensus 88 Lk~d-Ed~~~~FsQvF~L~~n~~~~~~v~n 116 (126)
T KOG2104|consen 88 LKLD-EDPILRFSQVFLLKPNIQGSYYVFN 116 (126)
T ss_pred eeec-cCCccceeeEEEEeEcCCCCEEEEe
Confidence 7766 56668888888886 3 7887654
No 64
>PHA03095 ankyrin-like protein; Provisional
Probab=61.26 E-value=5.6 Score=38.93 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.5
Q ss_pred hcccHHHHHHHhcCCChhhHhhhh
Q 022429 101 EQLVPEITTHALSYLDYPSLCRLS 124 (297)
Q Consensus 101 ~~LP~Eil~~IlsyLd~~sL~~~s 124 (297)
..||+||..+||+||+-.||-.+-
T Consensus 443 ~~lP~Ei~~~Il~~l~~~dl~~~~ 466 (471)
T PHA03095 443 CALPPEIVMRILDFLPDDDLRNLL 466 (471)
T ss_pred CCCCHHHHHHHHHhCCHHHHHHHh
Confidence 579999999999999999997654
No 65
>PHA02989 ankyrin repeat protein; Provisional
Probab=60.01 E-value=6.4 Score=39.44 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=25.4
Q ss_pred cchhhcccHHHHHHHhcCCChhhHhhhhcc
Q 022429 97 ASMMEQLVPEITTHALSYLDYPSLCRLSMT 126 (297)
Q Consensus 97 ~~~l~~LP~Eil~~IlsyLd~~sL~~~s~v 126 (297)
.+.+..||+||..+||+||+-.||-.+-.-
T Consensus 456 ~~~w~~LP~Eik~~Il~~L~~~dl~~i~~~ 485 (494)
T PHA02989 456 KNYWMYLPIEIQINILEYLTFSDFKTILKF 485 (494)
T ss_pred ccHHHhCCHHHHHHHHHcCCHHHHHHHHhh
Confidence 355778999999999999999999776553
No 66
>PHA02878 ankyrin repeat protein; Provisional
Probab=55.31 E-value=7.1 Score=38.84 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.2
Q ss_pred chhhcccHHHHHHHhcCCChhhHhhh
Q 022429 98 SMMEQLVPEITTHALSYLDYPSLCRL 123 (297)
Q Consensus 98 ~~l~~LP~Eil~~IlsyLd~~sL~~~ 123 (297)
+.+..||+||-.+||+||+-.||..+
T Consensus 445 ~~w~~lP~Eik~~Il~~l~~~dl~~~ 470 (477)
T PHA02878 445 YMWNRLPLEIKHYIMELLDDASLCNM 470 (477)
T ss_pred CcHhhCCHHHHHHHHHHcCcHHHHHH
Confidence 55778999999999999999999764
No 67
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=52.52 E-value=14 Score=30.42 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=17.3
Q ss_pred CceEEEEEEEEeCCeEEEEEE
Q 022429 259 GPFNMTNVFEFHNGQWYMVHH 279 (297)
Q Consensus 259 g~lraT~VfrR~dG~Wrlvhh 279 (297)
.....+..++|++|+|||...
T Consensus 96 ~~~~~~~~l~ke~g~WkI~~V 116 (120)
T PF12883_consen 96 KKQTVIVCLVKENGRWKIDDV 116 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEEECCEEEEEEe
Confidence 356788899999999999754
No 68
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=51.54 E-value=22 Score=28.58 Aligned_cols=22 Identities=23% Similarity=0.649 Sum_probs=18.4
Q ss_pred CceEEEEEEEEeCCeEEEEEEe
Q 022429 259 GPFNMTNVFEFHNGQWYMVHHH 280 (297)
Q Consensus 259 g~lraT~VfrR~dG~WrlvhhH 280 (297)
|.+.--.|+.|.+|+|.|+|.=
T Consensus 49 g~M~Pi~v~~~~~g~w~iiHrC 70 (92)
T PF12647_consen 49 GRMEPIAVWVRRDGEWMIIHRC 70 (92)
T ss_pred CeeeEEEEEEEcCCCEEEEEec
Confidence 4566678999999999999973
No 69
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=47.92 E-value=7.4 Score=27.81 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=7.5
Q ss_pred CCCCCCcccccCCC
Q 022429 50 TARKKSCNCTCSCN 63 (297)
Q Consensus 50 ~~~~~~c~c~c~~~ 63 (297)
-.+-.+|+|+|-|-
T Consensus 21 vapggcccccc~cc 34 (56)
T TIGR03602 21 VAPGGCCCCCCCCC 34 (56)
T ss_pred ecCCCeEEEeccEE
Confidence 34455666655553
No 70
>PHA02798 ankyrin-like protein; Provisional
Probab=45.15 E-value=14 Score=36.98 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.6
Q ss_pred cchhhcccHHHHHHHhcCCChhhHhh
Q 022429 97 ASMMEQLVPEITTHALSYLDYPSLCR 122 (297)
Q Consensus 97 ~~~l~~LP~Eil~~IlsyLd~~sL~~ 122 (297)
.+.+..||+||-.+|++||+-.||--
T Consensus 461 ~~~w~~lP~Eik~~Il~~L~~~dl~~ 486 (489)
T PHA02798 461 LSYWNYIPNEIKFKIINNLSNNDILE 486 (489)
T ss_pred cchhhhCCHHHHHHHHHcCChHHHHH
Confidence 35688899999999999999999853
No 71
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=44.83 E-value=1.2e+02 Score=25.88 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=21.8
Q ss_pred CEEEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEEE
Q 022429 244 DIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHH 279 (297)
Q Consensus 244 DvAvv~~~e~v~~~~g~lraT~VfrR~dG~Wrlvhh 279 (297)
+.+.|...-... ++.++.+...+++.+|+|++.=.
T Consensus 101 ~~~~V~t~i~~~-~g~~i~v~y~l~~~~g~Wki~Dv 135 (170)
T PF05494_consen 101 NRAIVRTEIISK-DGQPIPVDYRLRKKDGKWKIYDV 135 (170)
T ss_dssp SEEEEEEEEEET--TEEEEEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEEEEcC-CCCcEEEEEEEEEcCCCeEEEEE
Confidence 455555442221 23457777777889999999754
No 72
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=38.43 E-value=1.6e+02 Score=26.37 Aligned_cols=21 Identities=19% Similarity=0.577 Sum_probs=16.1
Q ss_pred CCceEEEEEEEEeCCeEEEEE
Q 022429 258 TGPFNMTNVFEFHNGQWYMVH 278 (297)
Q Consensus 258 ~g~lraT~VfrR~dG~Wrlvh 278 (297)
+.++.+..-.++.+|+|++.=
T Consensus 137 g~~i~V~y~l~~~~g~WkV~D 157 (198)
T TIGR03481 137 GDPVKFDYIMRQGQGKWRIVD 157 (198)
T ss_pred CCcEEEEEEEEecCCCeEEEE
Confidence 456777777778899999864
No 73
>PF12669 P12: Virus attachment protein p12 family
Probab=38.00 E-value=39 Score=24.61 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 022429 15 IAAIFTIFSLLLA 27 (297)
Q Consensus 15 ~~~~~~~~~~~~~ 27 (297)
|++++.+..++++
T Consensus 4 I~~Ii~~~~~~v~ 16 (58)
T PF12669_consen 4 IGIIILAAVAYVA 16 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444333333
No 74
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=33.74 E-value=2.2e+02 Score=25.76 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=24.0
Q ss_pred eeEEEEeEEEEeCCEEEEEEEeeeEeCCC-ceEEEEEEEEe--CCeEEEEE
Q 022429 231 DFQVQDVRARVLTDIAWVTMKTYIDIDTG-PFNMTNVFEFH--NGQWYMVH 278 (297)
Q Consensus 231 ~vei~dl~V~v~gDvAvv~~~e~v~~~~g-~lraT~VfrR~--dG~Wrlvh 278 (297)
++++...+....++.+.|...- +..+|. ++.+..-+++. +|+|++.-
T Consensus 116 ~i~v~~~~~~~~~~~~~V~t~i-i~~~g~~~i~v~y~~~~~~~~g~WkVyD 165 (211)
T PRK15117 116 TYQIAPEQPLGDATIVPIRVTI-IDPNGRPPVRLDFQWRKNSQTGNWQAYD 165 (211)
T ss_pred eEEEeecccCCCCCEEEEEEEE-EecCCCCCEEEEEEEEECCCCCCceEEE
Confidence 4555443333344444443221 121232 46666667764 79999864
No 75
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=30.79 E-value=16 Score=32.49 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022429 12 QFVIAAIFTIFSLLLAVRTA 31 (297)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (297)
+.++-.++.++.+.++++..
T Consensus 5 ~~~lr~~l~llal~~a~yiv 24 (176)
T PF06364_consen 5 PAALRVVLVLLALCLAGYIV 24 (176)
T ss_pred hhHHHHHHHHHHHHHHhhee
Confidence 44555555555555555443
No 76
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=29.94 E-value=1.5e+02 Score=24.28 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhCChhhhhhhhccC
Q 022429 171 VVNVNAEFFNIIRERSLPAMSRFWLNA 197 (297)
Q Consensus 171 I~aa~~aFy~A~~agDldam~alWadd 197 (297)
++++.....+|+.+||.+.+..+.+++
T Consensus 24 ak~~f~~i~~A~~~~D~~~l~~~~t~~ 50 (147)
T PF04280_consen 24 AKEAFLPIQEAWAKGDLEALRPLLTEE 50 (147)
T ss_dssp HHHTHHHHHHHHHHT-HHHHHHHB-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhCHH
Confidence 444555577899999999999886555
No 77
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=29.38 E-value=3.6e+02 Score=23.15 Aligned_cols=100 Identities=17% Similarity=0.308 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE-----EeCC-EEEE
Q 022429 175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR-----VLTD-IAWV 248 (297)
Q Consensus 175 ~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~-----v~gD-vAvv 248 (297)
.+.||..+.+ .-..+.++|.+...+ += .|.+..|++.+-+- |+.-+.-++++.+++.. +.|+ +++.
T Consensus 20 v~~YY~smD~-rR~~i~rlY~~~atl--vW-NGn~v~g~esls~f----f~~LPsS~~qi~~lD~Qpv~dqat~~q~~vL 91 (139)
T KOG4353|consen 20 VNVYYSSMDK-RRRGIGRLYLDNATL--VW-NGNPVSGTESLSEF----FNMLPSSEFQINDLDCQPVHDQATGSQTTVL 91 (139)
T ss_pred HHHHHHHHHH-HHHHhHHHhhccceE--EE-cCCcchhHHHHHHH----HHhCCCccccccccccccchhhcccccceEE
Confidence 3456666655 568899999988544 44 45678888887764 44444446666666655 3333 4443
Q ss_pred EEE-eeeEeCCCc---eEEEEEEEEeCCeEEEEEEecC
Q 022429 249 TMK-TYIDIDTGP---FNMTNVFEFHNGQWYMVHHHSS 282 (297)
Q Consensus 249 ~~~-e~v~~~~g~---lraT~VfrR~dG~WrlvhhHaS 282 (297)
... -.+..+|.. +.-|-+.--+++.|+-+..-.|
T Consensus 92 vvvsGtVkFdG~k~r~F~qt~ll~~e~~~~k~~~~v~S 129 (139)
T KOG4353|consen 92 VVVSGTVKFDGNKQRVFNQTFLLTAEDPPFKTVWKVAS 129 (139)
T ss_pred EEEeeeEEEcCCccccccceeEEeecCCccchhhhhhh
Confidence 332 334445543 3445555667888885544443
No 78
>PHA02876 ankyrin repeat protein; Provisional
Probab=28.82 E-value=31 Score=36.03 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.4
Q ss_pred cchhhcccHHHHHHHhcCCChhhHhhh
Q 022429 97 ASMMEQLVPEITTHALSYLDYPSLCRL 123 (297)
Q Consensus 97 ~~~l~~LP~Eil~~IlsyLd~~sL~~~ 123 (297)
.+.+..||.||-++|++|||-.||-.+
T Consensus 653 ~~~w~~lP~eik~~Il~~l~~~dl~~~ 679 (682)
T PHA02876 653 SSDWSKLPPDIKLSILEFIDNNELRKI 679 (682)
T ss_pred ccchhhCCHHHHHHHHHHhhhhHHHHH
Confidence 346778999999999999999999754
No 79
>PLN03181 glycosyltransferase; Provisional
Probab=28.24 E-value=1.1e+02 Score=31.26 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=20.5
Q ss_pred ccchhHHHHHHHHH-HHHHHHHHHHhhcCCCC
Q 022429 7 TFFSSQFVIAAIFT-IFSLLLAVRTARSTKST 37 (297)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 37 (297)
.+++.-++.++++. ++-+++++|+|.++.+.
T Consensus 27 ~~~~~~~~f~~ga~~a~ll~~~~~s~~~~~~~ 58 (453)
T PLN03181 27 SCFSDGVLFLGGAVVAFLLVWSLASILSPSPN 58 (453)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 45666666655554 47777888888876554
No 80
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=24.85 E-value=4.4e+02 Score=22.53 Aligned_cols=26 Identities=4% Similarity=-0.051 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCChhhhhhhhccCC
Q 022429 173 NVNAEFFNIIRERSLPAMSRFWLNAD 198 (297)
Q Consensus 173 aa~~aFy~A~~agDldam~alWaddd 198 (297)
+........+..++.+.-.++|++|.
T Consensus 3 ~~l~~ea~llD~~~~~~W~~lf~~d~ 28 (155)
T TIGR03231 3 QFLYRKAELCDAQDWDAYLDLFDEDS 28 (155)
T ss_pred hHHHHHHHHhcccCHHHHHHHhCcCc
Confidence 34445566788999999999999985
No 81
>PRK03427 cell division protein ZipA; Provisional
Probab=24.45 E-value=76 Score=31.15 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=15.5
Q ss_pred HHHHHHHHH-HHHHH-HHHHhhc
Q 022429 13 FVIAAIFTI-FSLLL-AVRTARS 33 (297)
Q Consensus 13 ~~~~~~~~~-~~~~~-~~~~~~~ 33 (297)
.||.+|+.| +.||+ .||+.|.
T Consensus 8 iLivvGAIAIiAlL~HGlWtsRK 30 (333)
T PRK03427 8 ILIIVGAIAIIALLVHGFWTSRK 30 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhccc
Confidence 567777776 55555 9999996
No 82
>PF14642 FAM47: FAM47 family
Probab=22.24 E-value=48 Score=31.39 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.9
Q ss_pred hcccHHHHHHHhcCCChhh
Q 022429 101 EQLVPEITTHALSYLDYPS 119 (297)
Q Consensus 101 ~~LP~Eil~~IlsyLd~~s 119 (297)
+.||+|||++||.-||+.-
T Consensus 139 E~mPpdLll~VLevLDPer 157 (258)
T PF14642_consen 139 EDMPPDLLLKVLEVLDPER 157 (258)
T ss_pred ccCCHHHHHHHHhccCccc
Confidence 4699999999999999863
No 83
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=20.53 E-value=1.3e+02 Score=25.21 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCC
Q 022429 10 SSQFVIAAIFTIFSLLLAVRTARSTK 35 (297)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (297)
.++.+++++++.|+|.+.+.+|.|+-
T Consensus 5 ~~Ra~Ls~~ln~LAL~~S~tA~~sSy 30 (118)
T PF07803_consen 5 RQRALLSLILNLLALAFSTTALLSSY 30 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56789999999999999999998765
Done!