Query 022430
Match_columns 297
No_of_seqs 213 out of 535
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 5.4E-66 1.2E-70 479.3 10.9 283 1-297 2-287 (408)
2 PF03547 Mem_trans: Membrane t 100.0 7.5E-35 1.6E-39 279.3 21.7 268 9-297 1-279 (385)
3 COG0679 Predicted permeases [G 99.9 8.1E-21 1.8E-25 178.6 17.5 149 7-171 2-150 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.9 1.2E-20 2.5E-25 177.8 16.4 148 6-169 2-155 (321)
5 PRK09903 putative transporter 99.8 7.8E-19 1.7E-23 165.2 18.2 147 11-171 6-153 (314)
6 TIGR00841 bass bile acid trans 96.5 0.068 1.5E-06 49.9 13.8 136 14-164 140-276 (286)
7 COG0385 Predicted Na+-dependen 94.2 2 4.4E-05 40.8 14.7 137 15-171 168-308 (319)
8 PF13593 DUF4137: SBF-like CPA 92.3 2.6 5.6E-05 39.9 12.2 130 15-157 165-301 (313)
9 TIGR00832 acr3 arsenical-resis 92.1 1 2.2E-05 42.9 9.3 105 15-122 182-296 (328)
10 PF05684 DUF819: Protein of un 89.9 4.5 9.8E-05 39.4 11.7 135 14-167 240-375 (378)
11 TIGR00783 ccs citrate carrier 89.7 1.5 3.3E-05 42.1 8.0 88 17-107 207-300 (347)
12 PF05684 DUF819: Protein of un 88.7 7.2 0.00016 38.0 12.0 82 13-97 24-109 (378)
13 KOG1650 Predicted K+/H+-antipo 69.5 21 0.00046 38.1 8.5 123 31-164 295-417 (769)
14 PRK12460 2-keto-3-deoxyglucona 68.2 21 0.00046 33.9 7.3 103 15-126 167-270 (312)
15 PRK03818 putative transporter; 67.3 77 0.0017 32.5 11.8 130 35-172 54-186 (552)
16 TIGR00807 malonate_madL malona 65.1 70 0.0015 26.2 8.7 81 15-99 38-118 (125)
17 COG3329 Predicted permease [Ge 64.9 1.3E+02 0.0029 28.7 15.4 99 1-104 1-103 (372)
18 PRK11339 abgT putative aminobe 63.9 37 0.0008 34.5 8.5 66 15-82 91-156 (508)
19 PF03601 Cons_hypoth698: Conse 63.2 1.3E+02 0.0028 28.5 11.6 140 15-171 27-172 (305)
20 COG2855 Predicted membrane pro 60.5 64 0.0014 31.0 9.0 120 40-174 64-184 (334)
21 PF03812 KdgT: 2-keto-3-deoxyg 58.1 39 0.00085 32.1 7.1 107 12-126 169-276 (314)
22 PLN03159 cation/H(+) antiporte 58.1 1.2E+02 0.0026 32.8 11.7 66 37-103 313-381 (832)
23 PF03616 Glt_symporter: Sodium 57.4 1.8E+02 0.0039 28.2 11.8 108 57-172 74-187 (368)
24 PF03390 2HCT: 2-hydroxycarbox 57.2 1.4E+02 0.0031 29.5 11.1 128 18-155 63-201 (414)
25 TIGR00819 ydaH p-Aminobenzoyl- 56.4 2.3E+02 0.005 28.9 12.7 65 17-83 89-153 (513)
26 TIGR03802 Asp_Ala_antiprt aspa 55.1 53 0.0011 33.7 8.1 113 10-127 8-140 (562)
27 PRK04972 putative transporter; 54.3 83 0.0018 32.3 9.4 154 12-171 12-188 (558)
28 PF02667 SCFA_trans: Short cha 52.2 2.5E+02 0.0054 28.2 11.9 37 2-48 53-89 (453)
29 PRK05274 2-keto-3-deoxyglucona 51.9 36 0.00079 32.5 5.9 103 15-125 174-277 (326)
30 PF03817 MadL: Malonate transp 51.5 1.3E+02 0.0029 24.6 8.4 80 15-98 38-117 (125)
31 PRK05326 potassium/proton anti 49.8 1E+02 0.0022 31.4 9.2 102 17-124 247-350 (562)
32 COG0385 Predicted Na+-dependen 47.3 99 0.0022 29.5 8.0 91 34-129 27-122 (319)
33 PF03390 2HCT: 2-hydroxycarbox 46.8 1.7E+02 0.0036 29.1 9.7 79 31-109 286-369 (414)
34 PF03806 ABG_transport: AbgT p 45.9 2.2E+02 0.0047 29.0 10.5 65 16-82 82-146 (502)
35 COG2978 AbgT Putative p-aminob 45.5 81 0.0017 31.8 7.3 64 19-84 96-159 (516)
36 TIGR00793 kdgT 2-keto-3-deoxyg 44.6 77 0.0017 30.1 6.7 106 13-126 170-276 (314)
37 TIGR00831 a_cpa1 Na+/H+ antipo 43.7 1.3E+02 0.0029 30.4 8.9 52 17-73 25-76 (525)
38 COG3763 Uncharacterized protei 42.2 46 0.001 24.6 3.8 24 72-95 3-26 (71)
39 PRK01844 hypothetical protein; 40.6 50 0.0011 24.6 3.8 24 72-95 3-26 (72)
40 COG5505 Predicted integral mem 40.0 2.5E+02 0.0054 27.0 9.2 79 16-99 33-116 (384)
41 TIGR00783 ccs citrate carrier 39.7 1.8E+02 0.0038 28.2 8.5 116 31-154 5-131 (347)
42 PRK03562 glutathione-regulated 39.2 2.1E+02 0.0045 29.8 9.6 83 38-124 261-344 (621)
43 PF03956 DUF340: Membrane prot 38.7 1E+02 0.0022 27.1 6.3 80 20-102 4-85 (191)
44 COG5505 Predicted integral mem 37.8 1.6E+02 0.0035 28.2 7.7 122 17-157 250-371 (384)
45 PF06305 DUF1049: Protein of u 37.0 25 0.00054 24.9 1.8 25 73-97 18-42 (68)
46 TIGR03082 Gneg_AbrB_dup membra 36.7 2.5E+02 0.0055 23.4 9.0 48 55-102 55-106 (156)
47 PF05145 AmoA: Putative ammoni 36.5 1.7E+02 0.0037 27.7 7.9 49 54-102 32-84 (318)
48 PF06295 DUF1043: Protein of u 35.5 34 0.00074 28.0 2.6 22 79-100 2-23 (128)
49 TIGR00832 acr3 arsenical-resis 35.1 1.2E+02 0.0027 28.7 6.7 49 56-104 52-105 (328)
50 PF05552 TM_helix: Conserved T 34.9 65 0.0014 21.9 3.6 32 66-97 8-39 (53)
51 COG0679 Predicted permeases [G 32.9 4.1E+02 0.009 24.8 10.2 91 16-109 169-261 (311)
52 PF12751 Vac7: Vacuolar segreg 32.7 59 0.0013 31.8 4.1 27 254-280 309-335 (387)
53 COG2991 Uncharacterized protei 32.2 39 0.00085 25.1 2.1 25 4-28 1-25 (77)
54 COG3493 CitS Na+/citrate sympo 31.9 3.1E+02 0.0067 27.1 8.7 97 19-118 295-396 (438)
55 KOG1965 Sodium/hydrogen exchan 31.2 1.1E+02 0.0025 31.5 6.0 65 14-79 41-133 (575)
56 PRK11677 hypothetical protein; 31.0 57 0.0012 27.2 3.2 22 79-100 6-27 (134)
57 TIGR00840 b_cpa1 sodium/hydrog 31.0 2.4E+02 0.0052 29.0 8.4 35 44-79 65-100 (559)
58 TIGR03802 Asp_Ala_antiprt aspa 30.7 6.1E+02 0.013 26.1 11.7 67 34-102 440-508 (562)
59 TIGR03136 malonate_biotin Na+- 29.4 4.2E+02 0.0092 26.0 9.2 78 15-97 251-330 (399)
60 PF03977 OAD_beta: Na+-transpo 29.2 2.8E+02 0.0062 26.8 7.9 76 15-97 213-293 (360)
61 KOG2532 Permease of the major 28.7 5.8E+02 0.013 25.5 10.6 62 98-172 156-219 (466)
62 PRK04972 putative transporter; 28.3 3.9E+02 0.0085 27.4 9.5 69 32-102 433-503 (558)
63 COG0798 ACR3 Arsenite efflux p 28.1 5.6E+02 0.012 24.8 11.9 47 79-126 253-299 (342)
64 TIGR00210 gltS sodium--glutama 27.6 5.4E+02 0.012 25.3 9.9 89 35-130 270-363 (398)
65 KOG2533 Permease of the major 27.1 6E+02 0.013 25.7 10.4 20 12-33 318-337 (495)
66 COG3180 AbrB Putative ammonia 25.6 1.4E+02 0.0031 28.9 5.3 52 50-102 65-117 (352)
67 PF07219 HemY_N: HemY protein 25.6 66 0.0014 25.2 2.7 36 71-106 15-50 (108)
68 PRK14853 nhaA pH-dependent sod 25.5 5E+02 0.011 25.8 9.3 30 37-66 259-288 (423)
69 COG3071 HemY Uncharacterized e 24.0 70 0.0015 31.4 2.9 37 71-107 40-76 (400)
70 PF13940 Ldr_toxin: Toxin Ldr, 23.8 66 0.0014 20.3 1.8 19 252-270 11-29 (35)
71 PF06899 WzyE: WzyE protein; 23.5 1.2E+02 0.0025 30.1 4.3 34 30-63 143-176 (448)
72 KOG4112 Signal peptidase subun 23.5 1E+02 0.0022 24.2 3.1 14 260-273 33-46 (101)
73 TIGR01995 PTS-II-ABC-beta PTS 22.5 8.1E+02 0.018 25.5 10.6 63 4-68 100-170 (610)
74 COG0395 UgpE ABC-type sugar tr 22.4 6.3E+02 0.014 23.5 9.8 45 6-54 79-123 (281)
75 PF03812 KdgT: 2-keto-3-deoxyg 22.3 1.8E+02 0.0038 27.8 5.2 47 54-100 52-99 (314)
76 TIGR00946 2a69 he Auxin Efflux 22.2 2.9E+02 0.0063 25.7 6.8 95 16-113 183-278 (321)
77 PF06826 Asp-Al_Ex: Predicted 22.1 5.1E+02 0.011 22.2 9.7 86 15-103 28-115 (169)
78 PF03547 Mem_trans: Membrane t 21.6 4.8E+02 0.01 24.6 8.3 92 16-110 245-343 (385)
79 PF02673 BacA: Bacitracin resi 21.6 2E+02 0.0044 26.5 5.4 59 40-98 179-241 (259)
80 PRK09412 anaerobic C4-dicarbox 21.5 4.2E+02 0.0092 26.2 8.0 23 12-36 49-71 (433)
81 PRK00523 hypothetical protein; 21.4 1.7E+02 0.0037 21.8 3.9 23 73-95 5-27 (72)
82 PRK03659 glutathione-regulated 21.0 9.2E+02 0.02 24.8 11.7 85 38-126 258-343 (601)
83 TIGR00844 c_cpa1 na(+)/h(+) an 20.8 1.1E+03 0.024 25.6 12.9 146 2-158 19-190 (810)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=5.4e-66 Score=479.28 Aligned_cols=283 Identities=44% Similarity=0.759 Sum_probs=239.9
Q ss_pred CcHHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH
Q 022430 1 MEILDLFEVAL--MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN 78 (297)
Q Consensus 1 m~~~~~~~~a~--~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~ 78 (297)
||+++.+-.|. +|+++|++++.+|+++|+++.|++++++||.+|++||++|+|||||+++++++|.+++.+||+||++
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 78999988888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhH
Q 022430 79 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 158 (297)
Q Consensus 79 ~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i 158 (297)
.++++++|.++||+++|++|+|++.||++++||+|||+|+||+.+++|+|++++.|||++|.|.+||++|++++++++++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccc-cccCCCCCCccccccCCCCCcccccccCCcCcCCCCCCCCCCCcchhhhhhhccCCCCchhh
Q 022430 159 YIWTYVYYVMSLYLNKS-VSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLD 237 (297)
Q Consensus 159 ~~wt~G~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (297)
++|||+|+++.++..+. ...++.+-|. ..+.....+.+++++++++|+++.+.+++ .++ ....|.
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~--~~~~~~~~s~e~~~~~~~k~~ll~~~en~--~~~----------~~g~~~ 227 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEA--LLESVPQPSVESDEDSTCKTLLLASKENR--NNQ----------VVGREG 227 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhh--hhhccCCCCcccccccccccccccccccC--CCc----------eeeccc
Confidence 99999999887764322 1112101110 00000011123344556777776555441 111 112455
Q ss_pred HHHHHHHHHhhhhhhhhccChhHHHHHHHHHhhcccccccccccCCCCchhhhhhhhhcC
Q 022430 238 KMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297 (297)
Q Consensus 238 k~~~~~~~~~~~~~l~~~~~Pp~iaai~g~ivG~vP~Lr~~~f~~~apL~~i~dS~~~lG 297 (297)
|.+++.+...++.+++++++|||+|+++|+++|.||||||++|++|||||++|||++++|
T Consensus 228 ~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG 287 (408)
T KOG2722|consen 228 KVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLG 287 (408)
T ss_pred cceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhc
Confidence 566666667777789999999999999999999999999999999999999999999998
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=7.5e-35 Score=279.28 Aligned_cols=268 Identities=28% Similarity=0.454 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHH
Q 022430 9 VALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSA 88 (297)
Q Consensus 9 ~a~~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~ 88 (297)
+++++++++++++++||+++ |+|+++++..+.+|++|+++++|||+|++++++.+.+++.++|+++++.++.++++++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL 78 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 36789999999999999999 9999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHH
Q 022430 89 LAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168 (297)
Q Consensus 89 lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll 168 (297)
+++++.|++|.|+++++.+..+|+|+|++++|+|++.++ ||+ +|++|+++|.+++++++|++|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998 565 8999999999999999999999999
Q ss_pred hhccccccccCCCCCCccc--cccCCCCCcc-------ccccc-CCcCcCCCC-CCCCCCCcchhhhhhhccCCCCchhh
Q 022430 169 SLYLNKSVSDAGTNKDSRI--HIISSGESST-------NIFLE-SSRKPLLHS-SDRRSPDDSQIQAETRSTKSRFPFLD 237 (297)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~-~~~~t~~lp-~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (297)
+.++++.+..++.+.+.++ +.+.++++.. ..+++ .+++++... +..+++..+.. +...+.+.....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 224 (385)
T PF03547_consen 146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSV-STSPSPSNSTGAEQ 224 (385)
T ss_pred cccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhh-ccCCcccccchhhh
Confidence 8765443221110100000 0000000000 00000 001111110 00000000000 00000111123333
Q ss_pred HHHHHHHHHhhhhhhhhccChhHHHHHHHHHhhcccccccccccCCCCchhhhhhhhhcC
Q 022430 238 KMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297 (297)
Q Consensus 238 k~~~~~~~~~~~~~l~~~~~Pp~iaai~g~ivG~vP~Lr~~~f~~~apL~~i~dS~~~lG 297 (297)
+..++.+....+.-.+.++|||++|+++|+++|++|+++++++. .|++++++.||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg 279 (385)
T PF03547_consen 225 KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLG 279 (385)
T ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHH
Confidence 44333344333333688999999999999999999999999998 69999999886
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.86 E-value=8.1e-21 Score=178.62 Aligned_cols=149 Identities=23% Similarity=0.331 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHH
Q 022430 7 FEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIG 86 (297)
Q Consensus 7 ~~~a~~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~ 86 (297)
+...+.+++++++++++||+++ |.|.++++..+.+|++|+|+++|||+|.+++++ +.+...++..+.+..+.+.+..
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATA-DLSGLADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhC-CcchhhhHHHHHHHHHHHHHHH
Confidence 4567889999999999999999 999999999999999999999999999999999 5655566666666666666666
Q ss_pred HHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHH
Q 022430 87 SALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYY 166 (297)
Q Consensus 87 ~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ 166 (297)
.+...+..|..+.++++++.+..+.+|+|++++|+|+..++ ||+ +|++|..+|+.+.++..|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666788888888889999999999999999998885 898 89999999999999999999999
Q ss_pred HHhhc
Q 022430 167 VMSLY 171 (297)
Q Consensus 167 ll~~~ 171 (297)
.+.+.
T Consensus 146 ~l~~~ 150 (311)
T COG0679 146 LLARS 150 (311)
T ss_pred HHHHh
Confidence 88765
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.85 E-value=1.2e-20 Score=177.82 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcc-hhhhhhHHHHHHHHHH
Q 022430 6 LFEVALMPILKVLLVTALGLVL-AIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQ-SLISLWFMPVNILLSF 83 (297)
Q Consensus 6 ~~~~a~~~vl~vlli~~~G~~l-a~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~-~l~~~~~i~v~~~~~~ 83 (297)
.++..++.++++++++++||++ . |+|+++++..+.+|++++|+++||++|+++++. +.+ .....+...+.....+
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTT-LADILQKSQSPVVLFLWGAF 78 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999 8 999999999999999999999999999999986 443 3344445555555667
Q ss_pred HHHHHHHHHHHH-HhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccch---hhHHHHHHHhhhHH
Q 022430 84 LIGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYG---KAYASLSMAVGAIY 159 (297)
Q Consensus 84 ~i~~~lg~l~~~-i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g---~~Y~~~~~~~~~i~ 159 (297)
+..++++|.+.| .+|.+++.++.+..+++++|++++++|++.++ ||+ +| ..|+..+...+++.
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~~~~ 145 (321)
T TIGR00946 79 SGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGAVLM 145 (321)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhccchh
Confidence 788899999998 88889899999999999999999999999997 886 45 88999999999999
Q ss_pred HHHHHHHHHh
Q 022430 160 IWTYVYYVMS 169 (297)
Q Consensus 160 ~wt~G~~ll~ 169 (297)
.|++|+.+..
T Consensus 146 ~~~~~~~~~~ 155 (321)
T TIGR00946 146 TIALGLFLVS 155 (321)
T ss_pred HHHHHHHHhc
Confidence 9999986654
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.81 E-value=7.8e-19 Score=165.17 Aligned_cols=147 Identities=13% Similarity=0.193 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHH
Q 022430 11 LMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALA 90 (297)
Q Consensus 11 ~~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~lg 90 (297)
++.++++++++++||+++ |+|+++++..+.+|++++|+++||++|.++.+. +.+++.+-+...+...+.++++++++
T Consensus 6 ~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 6 IGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 456799999999999999 999999999999999999999999999999886 77766534555677777788888888
Q ss_pred HHHHH-HhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHHh
Q 022430 91 WILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS 169 (297)
Q Consensus 91 ~l~~~-i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll~ 169 (297)
|++.| ..|.+++.++.....++++|++++++|+++++ ||++.. .|+.|..++. +.+++.|++|..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~~-~~~~~~~~~g~~~~~ 151 (314)
T PRK09903 83 WFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIISI-IVNAITIPIGLYLLN 151 (314)
T ss_pred HHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHHH-HHHHHHHHHHHHHHc
Confidence 88875 56777677777888899999999999999996 886200 1565666544 578899999998886
Q ss_pred hc
Q 022430 170 LY 171 (297)
Q Consensus 170 ~~ 171 (297)
.+
T Consensus 152 ~~ 153 (314)
T PRK09903 152 PS 153 (314)
T ss_pred cc
Confidence 43
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.55 E-value=0.068 Score=49.87 Aligned_cols=136 Identities=12% Similarity=0.115 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHHHHHHHHHHHHHHH
Q 022430 14 ILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWI 92 (297)
Q Consensus 14 vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~-~~~i~v~~~~~~~i~~~lg~l 92 (297)
...+++=..+|..+++.. +-+.+...+ ++++.. +++=++++.-++.+ .+.+.+ .|.+.+..++..++++.+||+
T Consensus 140 ~~~v~vPl~lG~~~r~~~-p~~~~~~~~-~~~~s~-~~l~liv~~~~~~~--~~~i~~~~~~~~~~~~ll~~~~~~~g~~ 214 (286)
T TIGR00841 140 LVAVLIPVSIGMLVKHKL-PQIAKIILK-VGLISV-FLLSVIIAVVGGIN--VENLATIGPLLLLVGILLPLAGFLLGYL 214 (286)
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHh-CchHHH-HHHHHHHHHHHHhh--HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566677778888877311 111111112 333322 22223444444433 233332 344445556777899999999
Q ss_pred HHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHH
Q 022430 93 LIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYV 164 (297)
Q Consensus 93 ~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G 164 (297)
++|.+|.+++++......++..|++ +.+.+..+. |+. +...-+..|...++..+.++.+-+.
T Consensus 215 ~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~--~~a~~~~~~~v~~~~~~~~~a~~~~ 276 (286)
T TIGR00841 215 LAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP--EVAVPSAIFPLIYALFQLAFALLFL 276 (286)
T ss_pred HHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888889999988 777765553 542 1222355666677777776665443
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.20 E-value=2 Score=40.81 Aligned_cols=137 Identities=16% Similarity=0.034 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHh--hhhHHHHHHHhhHHHHHHhhccCCcchhhhhh-HHHHHHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSVTH--SLNNLVFYVFNPALIGSNLAETITYQSLISLW-FMPVNILLSFLIGSALAW 91 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~~~--~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~-~i~v~~~~~~~i~~~lg~ 91 (297)
..+++=..+|-++. + ++++-..+ ..=..+-...+=+.++...+.+ .+++.... .+.+..++...+++.+||
T Consensus 168 ~~vllP~~LG~~~r--~--~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~--~~~~~~~~~~v~~~v~~~n~lg~~~gy 241 (319)
T COG0385 168 LQVLLPFVLGQLLR--P--LLPKWVERLKKALPPVSVLSILLIVYAAFSAA--VENGIWSGLLIFVAVILHNLLGLLLGY 241 (319)
T ss_pred HHHHHHHHHHHHHH--H--HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777665 2 12222211 2222233344445566666554 34444333 444455778899999999
Q ss_pred HHHHHhcCCCcccceeeeecccCCcc-hhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHHhh
Q 022430 92 ILIKITRTPPHLQGLVIGCCSAGNMG-NLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSL 170 (297)
Q Consensus 92 l~~~i~~~p~~~rg~~i~~~~f~Nt~-~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll~~ 170 (297)
..+|.++.|+..+..+..|++-.|.+ ..|++- + |.+. ....--..+|....++..=.++.++=++
T Consensus 242 ~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~--~--------f~~~----~~~alP~aif~~~q~~~~a~la~~~~~~ 307 (319)
T COG0385 242 FGARLLGFDKADEITIAIEGGMQNLGLGAALAA--A--------FFGN----PLMALPLAIFSVWQNMSGAVLAGLYARR 307 (319)
T ss_pred HHHHHhCCChhheeeEEEeeccccHHHHHHHHH--h--------cCCC----chhHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988876 355553 1 2220 1334444556666666655566555554
Q ss_pred c
Q 022430 171 Y 171 (297)
Q Consensus 171 ~ 171 (297)
.
T Consensus 308 ~ 308 (319)
T COG0385 308 I 308 (319)
T ss_pred c
Confidence 3
No 8
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=92.27 E-value=2.6 Score=39.94 Aligned_cols=130 Identities=16% Similarity=0.125 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhH--HhhhhHHHHHHHhhHHHHHHhhccCCcch---h--hhhhHHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSV--THSLNNLVFYVFNPALIGSNLAETITYQS---L--ISLWFMPVNILLSFLIGS 87 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~--~~~ls~lv~~vflP~Lif~~l~~~~t~~~---l--~~~~~i~v~~~~~~~i~~ 87 (297)
+.+++=..+|-+++ +. +++.. .|..-+.+-...+-.+++++...++..+- + ..+..+.+..+....+.+
T Consensus 165 ~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 165 LTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 45555566687666 21 22221 12334444556666777777766633222 2 223333344456667778
Q ss_pred HHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhh
Q 022430 88 ALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGA 157 (297)
Q Consensus 88 ~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~ 157 (297)
.++|..+|.++.+++.+-.+.. |+-..+..+++++...+ |++.+ .......-+.+|....-
T Consensus 241 ~~~~~~~r~~~~~~~d~iA~~F-~gs~Ksl~~gvpl~~~l-------f~~~~-~~~~~~lP~~iyh~~Ql 301 (313)
T PF13593_consen 241 VLGWLAARLLGFSRPDRIAVLF-CGSQKSLALGVPLASIL-------FPGHP-DLGLIVLPLMIYHPLQL 301 (313)
T ss_pred HHHHHHHhhcCCChhhEEEEEE-EcCcCcchhHHHHHHHH-------ccccc-ccchhhhHHHHHHHHHH
Confidence 8999999999999988765555 45588888888888776 55321 22234445555555443
No 9
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=92.06 E-value=1 Score=42.93 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhcc-----CCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhh----hHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRI-----DLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL----WFMPVNILLSFLI 85 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~-----~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~----~~i~v~~~~~~~i 85 (297)
..+++=..+|..+++... ++..++..+.++.+.. +++=..++...+.+ .+.+.+. +.+....++...+
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~--~~~i~~~~~~i~~~~~~v~l~~~~ 258 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQ--GETIIELPLDIALIAIPLLIYFYI 258 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHH
Confidence 344455566776663222 2222233444555444 33334555555554 3434433 2333344677889
Q ss_pred HHHHHHHHHHHhcCCCcccceeeeecccCCcc-hhHHH
Q 022430 86 GSALAWILIKITRTPPHLQGLVIGCCSAGNMG-NLLLI 122 (297)
Q Consensus 86 ~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~-~Lpl~ 122 (297)
++.+||+++|.+|.+++++..+..+++..|.+ .++++
T Consensus 259 ~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA 296 (328)
T TIGR00832 259 MFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVA 296 (328)
T ss_pred HHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHH
Confidence 99999999999999999998888888888865 34444
No 10
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=89.95 E-value=4.5 Score=39.40 Aligned_cols=135 Identities=17% Similarity=0.130 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCh-hHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 022430 14 ILKVLLVTALGLVLAIDRIDLLGH-SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWI 92 (297)
Q Consensus 14 vl~vlli~~~G~~la~~~~~~l~~-~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~lg~l 92 (297)
...++.+..+|...+ ...+... .....+..+..++| |..++...++.++.+-..+.++.++...+-.++-++
T Consensus 240 ~~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777666 3333333 55666777766665 577888889999999444555556666777777888
Q ss_pred HHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHH
Q 022430 93 LIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYV 167 (297)
Q Consensus 93 ~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~l 167 (297)
++|++|.|.+ .+..++..|.|.-.-+-..|-.+. . +-..-|+..-.+.|+++|.+=+..|+-+
T Consensus 313 ~~kl~k~~l~----~~~vAS~AnIGGpaTA~a~A~a~~-~-------~Lv~pgvL~gvlGyaiGty~G~~va~~l 375 (378)
T PF05684_consen 313 LGKLFKIDLF----ELLVASNANIGGPATAPAVAAAKG-P-------SLVPPGVLMGVLGYAIGTYLGLAVAQLL 375 (378)
T ss_pred HHHHHCCCHH----HHHHHhhcccCCcchHHHHHHhcC-C-------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999954 444577888887666544443332 1 1222588888889999998888887643
No 11
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=89.70 E-value=1.5 Score=42.14 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHh---hhhHHHHHHHhhHHHH-HHhhccCCcchhhhhh--HHHHHHHHHHHHHHHHH
Q 022430 17 VLLVTALGLVLAIDRIDLLGHSVTH---SLNNLVFYVFNPALIG-SNLAETITYQSLISLW--FMPVNILLSFLIGSALA 90 (297)
Q Consensus 17 vlli~~~G~~la~~~~~~l~~~~~~---~ls~lv~~vflP~Lif-~~l~~~~t~~~l~~~~--~i~v~~~~~~~i~~~lg 90 (297)
...++.+|.++. ..|+++++..+ ...|++.+.+++.+++ ..++.. +++++.+.. +..+.++.+.+-..+.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t-~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYI-DLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-CHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 456777888888 99999998755 5555666667776666 455555 899998854 23333333333334555
Q ss_pred HHHHHHhcCCCccccee
Q 022430 91 WILIKITRTPPHLQGLV 107 (297)
Q Consensus 91 ~l~~~i~~~p~~~rg~~ 107 (297)
+++.|+++.=+-..+.+
T Consensus 284 ~lvGKllG~YPiE~aIt 300 (347)
T TIGR00783 284 AFLGKLMGMYPVESAIT 300 (347)
T ss_pred HHHHHHhCCChHHHHHH
Confidence 78899998765554443
No 12
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=88.67 E-value=7.2 Score=38.00 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH----HHHHHHHHHH
Q 022430 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN----ILLSFLIGSA 88 (297)
Q Consensus 13 ~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~----~~~~~~i~~~ 88 (297)
-+-.++++.+.|.+++ ..|++|.+....+...+...++|..++--+-+. |+.++.+...=++. ..+.+++|..
T Consensus 24 ~l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred hcCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445678888899999 899996666677888999999999888888777 88887776543333 3456666777
Q ss_pred HHHHHHHHh
Q 022430 89 LAWILIKIT 97 (297)
Q Consensus 89 lg~l~~~i~ 97 (297)
+++.+.+..
T Consensus 101 va~~l~~~~ 109 (378)
T PF05684_consen 101 VAFLLFGGF 109 (378)
T ss_pred HHHHHHhhc
Confidence 776665544
No 13
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=69.55 E-value=21 Score=38.06 Aligned_cols=123 Identities=14% Similarity=0.031 Sum_probs=79.4
Q ss_pred ccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeee
Q 022430 31 RIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGC 110 (297)
Q Consensus 31 ~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~ 110 (297)
+-+-+...-.+.+..+++.+++|+.+...-.+. +...+..|+.......+..+.-++.....+..+|+|.+ ..+...
T Consensus 295 ~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~-di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~--~~l~l~ 371 (769)
T KOG1650|consen 295 HGPPLGSALIEKLEDLVSGLLLPLYFAISGLKT-DISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPLR--DSLALG 371 (769)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhccce-eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh--HHHHHH
Confidence 334444477888999999999999988887777 77777775555555666666666666777788999965 555555
Q ss_pred cccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHH
Q 022430 111 CSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYV 164 (297)
Q Consensus 111 ~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G 164 (297)
..+++-|.+-+.+...--+ .+.-.+++.+-..+|..+++.+.=.+-
T Consensus 372 ~lm~~kgl~el~~~~~~~~--------~~~~~~~~f~~~vl~alv~t~I~~~~l 417 (769)
T KOG1650|consen 372 LLMSTKGLVELIVLNTGLD--------RKILSDEGFTVMVLMALVSTFITPPLL 417 (769)
T ss_pred HHHHhhhHHHHHHHHHHhh--------cCCcccchHHHHHHHHHHHHhhHHHHH
Confidence 5555555555554333211 222233667666777666665544333
No 14
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=68.17 E-value=21 Score=33.89 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHH-HHHHHHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFM-PVNILLSFLIGSALAWIL 93 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i-~v~~~~~~~i~~~lg~l~ 93 (297)
+..++=+.+|.++. . ++++.++.+.+=+- +.+|-. ...++.+++++++.+.++- .+..+++..+...+++++
T Consensus 167 v~lilpILiGmilG--N---ld~~~~~~l~~Gi~-f~I~f~-~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i 239 (312)
T PRK12460 167 VAALLPLVLGMILG--N---LDPDMRKFLTKGGP-LLIPFF-AFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA 239 (312)
T ss_pred HHHHHHHHHHHHHh--c---cchhhHHHHhccce-EeHHHH-HHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 44666777888777 3 56666666555433 244433 3458888999999887554 444567778888999999
Q ss_pred HHHhcCCCcccceeeeecccCCcchhHHHHHHh
Q 022430 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (297)
Q Consensus 94 ~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~a 126 (297)
.|.+|.+++. + ...+++.||..-=|-.+..+
T Consensus 240 ~rllg~~~~~-g-~li~stAGnAIcgpAAVaAa 270 (312)
T PRK12460 240 DRLVGGTGIA-G-AAASSTAGNAVATPLAIAAA 270 (312)
T ss_pred HHHhCCChhH-H-HHHHHHhhHHHHHHHHHHHh
Confidence 9999877664 2 22334478888777776544
No 15
>PRK03818 putative transporter; Validated
Probab=67.35 E-value=77 Score=32.48 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=63.3
Q ss_pred CChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeccc
Q 022430 35 LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSA 113 (297)
Q Consensus 35 l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~-~~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f 113 (297)
+++.+...+..+-+.+|+=|. -.+-+.++ .+.+.+ -|...+..++..+++.+++++..++++.|...-.- +.+.+.
T Consensus 54 ~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~aGa~ 130 (552)
T PRK03818 54 LDSDMLHFIQEFGLILFVYTI-GIQVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLG-IFSGAV 130 (552)
T ss_pred cChHHHHHHHHHHHHHHHHHH-hhcccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-Hhhccc
Confidence 444444445555555555332 22222221 234444 34455556677788888899999999998553222 123334
Q ss_pred CCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHH--hhhHHHHHHHHHHHhhcc
Q 022430 114 GNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMA--VGAIYIWTYVYYVMSLYL 172 (297)
Q Consensus 114 ~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~--~~~i~~wt~G~~ll~~~~ 172 (297)
-||-.|.-+. +++ ++.+ .. ++.-.+-++.|...|-+ ++.+++=.+..++++.+.
T Consensus 131 T~tp~l~aa~-~~~-~~~~--~~-~~~~~~~a~gYa~~Yp~g~i~~il~~~~~~~~~~~~~ 186 (552)
T PRK03818 131 TNTPALGAGQ-QIL-RDLG--TP-GDLVDQMGMGYAMAYPFGICGILLSMWLIRLIFRINV 186 (552)
T ss_pred cccHHHHHHH-HHH-hccC--CC-ccccCCcchhhHhHhHHHHHHHHHHHHHHHHHhCCCh
Confidence 4444554442 222 1111 00 00011245666666544 333333235677777653
No 16
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=65.14 E-value=70 Score=26.16 Aligned_cols=81 Identities=9% Similarity=0.124 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILI 94 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~lg~l~~ 94 (297)
+-.++++....++. |+|++++++.+.+.--. ....|-.+--.=.+++ ..-+..-+...+..+...++++++--++.
T Consensus 38 iAMlLLi~~~~~l~--k~G~l~~~te~Gi~FW~-aMYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLA--KRGHLPQVTQFGVGFWS-AMYIPIVVAMAAGQNV-VAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChhHHhHHHHHH-ccHhHHHHHHhhhchh-HHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999 99999999999886432 3555654433333331 23333334444445666667777666666
Q ss_pred HHhcC
Q 022430 95 KITRT 99 (297)
Q Consensus 95 ~i~~~ 99 (297)
|+-|.
T Consensus 114 r~g~~ 118 (125)
T TIGR00807 114 KSSYG 118 (125)
T ss_pred HhCCC
Confidence 66543
No 17
>COG3329 Predicted permease [General function prediction only]
Probab=64.87 E-value=1.3e+02 Score=28.72 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccCC-CChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhh-hHHH
Q 022430 1 MEILDLFEVALMP--ILKVLLVTALGLVLAIDRIDL-LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMP 76 (297)
Q Consensus 1 m~~~~~~~~a~~~--vl~vlli~~~G~~la~~~~~~-l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~-~~i~ 76 (297)
|.+++.|+..+.. .-|.++-...|.+.+.-|..+ +++...+.++ ...+-|.=|..=. .+...++... .++.
T Consensus 1 ~d~ls~fl~~f~~nL~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGv-eir~snl~a~v~~~~ 75 (372)
T COG3329 1 MDMLSEFLMDFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGV-EIRNSNLTAMVLPVA 75 (372)
T ss_pred CchHHHHHHHHHhhhccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhcccce-eeecCCcchhHHHHH
Confidence 5667777766321 124455555676666434433 4444444433 3333344443322 2244444442 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 022430 77 VNILLSFLIGSALAWILIKITRTPPHLQ 104 (297)
Q Consensus 77 v~~~~~~~i~~~lg~l~~~i~~~p~~~r 104 (297)
....+.+++..+.-+++.|..|++...+
T Consensus 76 ~~~aL~~li~~ia~f~l~kl~~vdtvda 103 (372)
T COG3329 76 LGVALGFLIVFIAYFLLRKLPKVDTVDA 103 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchHHH
Confidence 4445555666665566666666665544
No 18
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=63.92 E-value=37 Score=34.50 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLS 82 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~ 82 (297)
+.+++++.+|.-++. |.|+++.--+|.+.|.--+..+|..+|..+-+++- .|..-..++|+...+.
T Consensus 91 LG~vlv~mlgvgvae-~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if 156 (508)
T PRK11339 91 LGAILALVLGAGLAE-RVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIF 156 (508)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHH
Confidence 345555555655553 89999999999999988888888888877777632 2333344445544443
No 19
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=63.21 E-value=1.3e+02 Score=28.49 Aligned_cols=140 Identities=13% Similarity=0.151 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCChhHHhhhh---HHHHHHHhhHHHHHHhhccCCcchhhhhhH-HHHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDR-IDLLGHSVTHSLN---NLVFYVFNPALIGSNLAETITYQSLISLWF-MPVNILLSFLIGSAL 89 (297)
Q Consensus 15 l~vlli~~~G~~la~~~-~~~l~~~~~~~ls---~lv~~vflP~Lif~~l~~~~t~~~l~~~~~-i~v~~~~~~~i~~~l 89 (297)
-.+++-+.+|.+++ . .--.++...+.+. |...++.. .=++-+++.+++.+.++ ..+...+...+...+
T Consensus 27 ~~~~~AillG~~i~--n~~~~~~~~~~~Gi~~~~k~~Lr~gI-----VLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~ 99 (305)
T PF03601_consen 27 GALLIAILLGMLIG--NLFFGLPARFKPGIKFSSKKLLRLGI-----VLLGFRLSFSDILALGWKGLLIIIIVVILTFLL 99 (305)
T ss_pred cHHHHHHHHHHHHh--hhccCCcHHHHhHHHHHHHHHHHHHH-----HHHCccccHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 34456677787777 3 2223444444433 44444443 34677889999999887 444456777788888
Q ss_pred HHHHH-HHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHH
Q 022430 90 AWILI-KITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168 (297)
Q Consensus 90 g~l~~-~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll 168 (297)
++.+. |.+|.|++..-+. + ++.+=.|.=-.. |+ .. --+.+++....+++-+.++..+.. +.+.+-.+++
T Consensus 100 ~~~lg~r~~~l~~~~~~Li-a-~GtsICG~SAi~---A~---a~-~i~a~~~~~a~ava~V~lfg~vam-~~~P~l~~~l 169 (305)
T PF03601_consen 100 TYWLGRRLFGLDRKLAILI-A-AGTSICGASAIA---AT---AP-VIKAKEEDVAYAVATVFLFGTVAM-FLYPLLGHAL 169 (305)
T ss_pred HHHHHHHHhCCCHHHHHHH-H-hhcccchHHHHH---HH---cc-cccCCCCceeeeehHHHHHHHHHH-HHHHHHHHHh
Confidence 88888 9999998855332 1 222111111111 11 01 123345567778888888877765 4455555566
Q ss_pred hhc
Q 022430 169 SLY 171 (297)
Q Consensus 169 ~~~ 171 (297)
..+
T Consensus 170 ~l~ 172 (305)
T PF03601_consen 170 GLS 172 (305)
T ss_pred CCC
Confidence 544
No 20
>COG2855 Predicted membrane protein [Function unknown]
Probab=60.51 E-value=64 Score=31.01 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=72.8
Q ss_pred HhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCcch
Q 022430 40 THSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN-ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGN 118 (297)
Q Consensus 40 ~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~-~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~ 118 (297)
...=+|....+.. .=++-++|++++.+...-.+. ..++...++++++++.|.++.|++.--++ +|+.+=.|.
T Consensus 64 I~fs~k~LLr~gI-----vLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Li--a~GssICGa 136 (334)
T COG2855 64 ITFSSKKLLRLGI-----VLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLI--AAGSSICGA 136 (334)
T ss_pred hhhhHHHHHHHHH-----HHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH--HccchhhHH
Confidence 3334444444433 345678899999998754444 45667788888999999999998854332 222221222
Q ss_pred hHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHHhhcccc
Q 022430 119 LLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNK 174 (297)
Q Consensus 119 Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll~~~~~~ 174 (297)
=-+. |. ++ -.+.+++....+++-+.++..+.. +.|.+-|+++.-+.++
T Consensus 137 sAia---A~--~p--vika~~~eva~aIa~V~lfgtia~-llyP~l~~~l~l~~~~ 184 (334)
T COG2855 137 SAIA---AT--AP--VIKAEEEEVAVAIAVVVLFGTLAM-LLYPLLYPLLGLSPEQ 184 (334)
T ss_pred HHHH---Hh--CC--cCCCCccccceehhhHHHHHHHHH-HHHHHHHHHhCCCcch
Confidence 1111 11 11 134567778888888888887765 5566666677655443
No 21
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=58.14 E-value=39 Score=32.13 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHH-HHHHHHHHHHH
Q 022430 12 MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNI-LLSFLIGSALA 90 (297)
Q Consensus 12 ~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~-~~~~~i~~~lg 90 (297)
++.+-.++=..+|.++. -+|+|.|+.+++-+- +.+|-+-| .++..++++++.+-..-.+.. ++++++.....
T Consensus 169 ~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~~-~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 169 MSLVAALLPIIIGMILG-----NLDPDFRKFLAPGVP-ILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCCC-eeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 34455566667788665 489999999988664 66676655 588888999999876544443 55566666777
Q ss_pred HHHHHHhcCCCcccceeeeecccCCcchhHHHHHHh
Q 022430 91 WILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (297)
Q Consensus 91 ~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~a 126 (297)
++.-|...-.+.. .-+-..++.+|...-|-.+.++
T Consensus 242 ~~~dr~i~~~~g~-aG~A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 242 YLADRLILKGNGV-AGAAISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHcCCCCc-eeehHHhhhhhhhhhhHHHHHh
Confidence 7777764322222 3344567889999999988655
No 22
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=58.13 E-value=1.2e+02 Score=32.80 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=40.3
Q ss_pred hhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 022430 37 HSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW---FMPVNILLSFLIGSALAWILIKITRTPPHL 103 (297)
Q Consensus 37 ~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~---~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~ 103 (297)
.+..+.+..++..+|+|.+..+ ++-.+++..+.+.+ .+.+..++.++.=.+.+++.++.++.|.+.
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~-vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~e 381 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAI-SGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFRE 381 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4456678888889999876554 56666887776532 222222232223334556777888888663
No 23
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=57.39 E-value=1.8e+02 Score=28.18 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=59.5
Q ss_pred HHHhhccCCcchhhhhhH----HHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHH--Hhhhhc
Q 022430 57 GSNLAETITYQSLISLWF----MPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIV--PAVCEE 130 (297)
Q Consensus 57 f~~l~~~~t~~~l~~~~~----i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~--~al~~~ 130 (297)
|+.++=.-+.+.+++-+. ......+...+-.++|..+++++..++. .|.... +.+=+|.=+-+.. +...+
T Consensus 74 F~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~-~Gll~G--si~f~GGhGTAaa~g~~fe~- 149 (368)
T PF03616_consen 74 FTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPL-FGLLAG--SIGFTGGHGTAAAFGPTFEE- 149 (368)
T ss_pred HHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHhc--cccccCCccHHHHHHHHHHH-
Confidence 555555545566655432 1122233455777888888888877754 454322 1222332222211 11111
Q ss_pred CCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHHhhcc
Q 022430 131 SNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYL 172 (297)
Q Consensus 131 ~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll~~~~ 172 (297)
.+| -+++.+-|+++.-+...++.++==-++.+++|+..
T Consensus 150 ---~~G-~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 150 ---LYG-WEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred ---hcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 134 25577788888888888777765556677787764
No 24
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=57.17 E-value=1.4e+02 Score=29.54 Aligned_cols=128 Identities=21% Similarity=0.195 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhccCCCChhHHhhhhHHH-----HHHHhhHHHHHHhhccCCcchhhhh--hHHHHHHHHHHHHHHHHH
Q 022430 18 LLVTALGLVLAIDRIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLAETITYQSLISL--WFMPVNILLSFLIGSALA 90 (297)
Q Consensus 18 lli~~~G~~la~~~~~~l~~~~~~~ls~lv-----~~vflP~Lif~~l~~~~t~~~l~~~--~~i~v~~~~~~~i~~~lg 90 (297)
++......++. +.|++|++..+.+.++. .++|.-||+-.++-.- +.+-|.+- .++|. .+...+.+.+++
T Consensus 63 il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm-~RklLika~~r~~p~-il~g~~~a~~~g 138 (414)
T PF03390_consen 63 ILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGM-NRKLLIKAFARFIPP-ILGGVIGAFLLG 138 (414)
T ss_pred HHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhc-CHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45555567777 89999999999888876 4688889999888765 76666552 22222 334455566666
Q ss_pred HHHHHHhcCCCccc--ceeeeecccCC-cchhHHHHHHhhhhcCCCCCC-CccccccchhhHHHHHHHh
Q 022430 91 WILIKITRTPPHLQ--GLVIGCCSAGN-MGNLLLIIVPAVCEESNSPFG-DTSVCSSYGKAYASLSMAV 155 (297)
Q Consensus 91 ~l~~~i~~~p~~~r--g~~i~~~~f~N-t~~Lpl~l~~al~~~~~~~Fg-~~~~~~~~g~~Y~~~~~~~ 155 (297)
.++..++.....+- ..++...+-|| -|.+|+..+.+= ..| +.++-..+.++.+.+-+.+
T Consensus 139 ~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~------~~g~~~~~~~s~~ipa~~lgNi~ 201 (414)
T PF03390_consen 139 GLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAE------ALGQDAEEYFSQLIPALTLGNIF 201 (414)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHH------HhCCCHHHHHHHHHHHHHHHHHH
Confidence 66666666554432 22333334444 457999987662 122 3445555666666655543
No 25
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=56.41 E-value=2.3e+02 Score=28.91 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHH
Q 022430 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF 83 (297)
Q Consensus 17 vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~ 83 (297)
+++++.+|+-++ +|.|+++.--+|.+.|.--+..+|..+|..+-+++ ..|..-..++|+...+..
T Consensus 89 ~vlv~mlGvGva-e~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~-asdaG~vvl~PL~a~if~ 153 (513)
T TIGR00819 89 AILALLLGAGIA-EKSGLIPALMRKLASHSNAKLASFMVLFIAFFSHI-ASDAALVILIPLGALIFH 153 (513)
T ss_pred HHHHHHHHHHHH-HHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHH
Confidence 333444444444 38999999999999998888888888877777663 223333445555544433
No 26
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=55.06 E-value=53 Score=33.74 Aligned_cols=113 Identities=17% Similarity=0.069 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCh--h--H------------HhhhhHHHHHHHhhHHHHHHhhccCCc---chhh
Q 022430 10 ALMPILKVLLVTALGLVLAIDRIDLLGH--S--V------------THSLNNLVFYVFNPALIGSNLAETITY---QSLI 70 (297)
Q Consensus 10 a~~~vl~vlli~~~G~~la~~~~~~l~~--~--~------------~~~ls~lv~~vflP~Lif~~l~~~~t~---~~l~ 70 (297)
.-+|++-+++++++||++. |.++-+= . + .-.++..+-++++ +|..+.++-+.-. ++++
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl-~lFvy~vG~~~Gp~Ff~~l~ 84 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFF-ALFIFAIGYEVGPQFFASLK 84 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHHHhhhccCHHHHHHHH
Confidence 3578999999999999998 5332110 0 0 0124444555555 3333444443332 3455
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhh
Q 022430 71 S-LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (297)
Q Consensus 71 ~-~~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al 127 (297)
+ -|...+..++..+++.++.+.+.++++.|...-.- +.+.+.-||-.|+-+ .+++
T Consensus 85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~G-l~aGalT~tp~l~aA-~~a~ 140 (562)
T TIGR03802 85 KDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAG-LAAGGLTQSAVIGTA-GDAI 140 (562)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHhchhhccHHHHHH-HHHH
Confidence 4 35556666777788899999999999998665433 234566677777766 3444
No 27
>PRK04972 putative transporter; Provisional
Probab=54.32 E-value=83 Score=32.32 Aligned_cols=154 Identities=16% Similarity=0.055 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC--------------------CChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhh
Q 022430 12 MPILKVLLVTALGLVLAIDRIDL--------------------LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS 71 (297)
Q Consensus 12 ~~vl~vlli~~~G~~la~~~~~~--------------------l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~ 71 (297)
++++.+++.+++||++. |.++ +..+.-..+..+-+.+|+=|. -.+-+.++ .+.+.+
T Consensus 12 ~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~v-G~~~Gp~F-~~~l~~ 87 (558)
T PRK04972 12 NYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCV-GVEAGPNF-FSIFFR 87 (558)
T ss_pred CChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-hhhhhHHH-HHHHHH
Confidence 57889999999999888 4322 121111122223333333221 11222221 234444
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHH
Q 022430 72 -LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYAS 150 (297)
Q Consensus 72 -~~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~ 150 (297)
-+...+..++..+++.++++.+.|.++.+...-.- +.+.+..||-.|..+. .++.+....+=.......+-+++|..
T Consensus 88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~aGa~T~tp~l~~a~-~~~~~~~~~~~~~~~~~~~~~vgYa~ 165 (558)
T PRK04972 88 DGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAG-MLAGSMTSTPVLVGAG-DTLRHSGAESRQLSLALDNLSLGYAL 165 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HhhccccCcHHHHHHH-HHHhccCccccchhcccCccchhHHh
Confidence 34455556677788888899999999998664322 2345566666666663 23211100000000001124788888
Q ss_pred HHHHhh-hHHHH-HHHHHHHhhc
Q 022430 151 LSMAVG-AIYIW-TYVYYVMSLY 171 (297)
Q Consensus 151 ~~~~~~-~i~~w-t~G~~ll~~~ 171 (297)
.|-+.. .+.++ ++-.++++.+
T Consensus 166 ~y~~g~i~~i~~~~~~p~l~rid 188 (558)
T PRK04972 166 TYLIGLVSLIVGARYLPKLQHQD 188 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 887765 22222 2224555543
No 28
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=52.23 E-value=2.5e+02 Score=28.21 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHH
Q 022430 2 EILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVF 48 (297)
Q Consensus 2 ~~~~~~~~a~~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~ 48 (297)
|+|+++-.+ ++..++...||.+| -.+...|.+.++.-
T Consensus 53 GfW~LL~F~----MQM~LilvtG~~lA------~sp~v~r~l~~lA~ 89 (453)
T PF02667_consen 53 GFWSLLAFA----MQMALILVTGYALA------SSPPVKRLLDRLAS 89 (453)
T ss_pred cHHHHHHHH----HHHHHHHHHHHHHh------CChHHHHHHHHHHh
Confidence 455554444 57778889999999 35666777777653
No 29
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=51.86 E-value=36 Score=32.52 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhh-HHHHHHHHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW-FMPVNILLSFLIGSALAWIL 93 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~-~i~v~~~~~~~i~~~lg~l~ 93 (297)
+++++.+.+|..+. . ++++.++.+.+= .++.+|+..|. ++.+++.+++.+-. ..++..++..++...+++..
T Consensus 174 i~allplliG~~lg--n---l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG--N---LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH--h---HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 34447778888776 2 555555554443 33488888877 88889998887764 34444444555566667777
Q ss_pred HHHhcCCCcccceeeeecccCCcchhHHHHHH
Q 022430 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVP 125 (297)
Q Consensus 94 ~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~ 125 (297)
-|+++..+...++- ...+.+|..-=|-.+..
T Consensus 247 ~Rl~~~~~g~~g~a-~~ttaG~aic~pAAvaa 277 (326)
T PRK05274 247 DRLIGGGNGVAGAA-AGSTAGNAVATPAAVAA 277 (326)
T ss_pred hheeecCCCcchHH-HHHHHHHHHHHHHHHHh
Confidence 78886544433332 23456777766666533
No 30
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=51.53 E-value=1.3e+02 Score=24.57 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILI 94 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~lg~l~~ 94 (297)
+-.++++.+..++. |+|++++++.+.+.--. ....|-.+--+=.+++ ..-+..-+...+..+...++++++--++.
T Consensus 38 iAMlLLI~~~~~l~--k~g~l~~~te~Gi~FW~-amYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQ--KKGLLSKPTEQGIEFWS-AMYIPIVVAMAAQQNV-VAALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChHHHhHHHHHH-ccHHHHHHHHhhhhhh-HHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 35677888888898 99999999999886433 3555654433333331 22222223333334555566666655555
Q ss_pred HHhc
Q 022430 95 KITR 98 (297)
Q Consensus 95 ~i~~ 98 (297)
|+-+
T Consensus 114 r~g~ 117 (125)
T PF03817_consen 114 RIGR 117 (125)
T ss_pred hcCC
Confidence 5543
No 31
>PRK05326 potassium/proton antiporter; Reviewed
Probab=49.81 E-value=1e+02 Score=31.41 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH-HHHHHHHH-HHHHHHHH
Q 022430 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN-ILLSFLIG-SALAWILI 94 (297)
Q Consensus 17 vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~-~~~~~~i~-~~lg~l~~ 94 (297)
++.....|..++ ....-.++..+.....+.+++.|. +|..++-.+++.++.+.++..+. .++...++ .+..++..
T Consensus 247 ~la~~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~ 323 (562)
T PRK05326 247 FLAVYLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSL 323 (562)
T ss_pred HHHHHHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677776 444444455555666666778865 78889998888888765432222 22222222 22233444
Q ss_pred HHhcCCCcccceeeeecccCCcchhHHHHH
Q 022430 95 KITRTPPHLQGLVIGCCSAGNMGNLLLIIV 124 (297)
Q Consensus 95 ~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~ 124 (297)
+.++.|.+.+.. +.. .+--|..++.+.
T Consensus 324 ~~~~~~~~e~~~-i~~--~g~RG~v~i~lA 350 (562)
T PRK05326 324 LPFRFNLREKLF-ISW--VGLRGAVPIVLA 350 (562)
T ss_pred ccCCCCHhhhhe-eee--ecchhHHHHHHH
Confidence 555666554433 222 255777776654
No 32
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=47.29 E-value=99 Score=29.54 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=61.9
Q ss_pred CCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-ceee
Q 022430 34 LLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS----LWFMPVNILLSFLIGSALAWILIKITRTPPHLQ-GLVI 108 (297)
Q Consensus 34 ~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~----~~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~r-g~~i 108 (297)
....|....+...+ + -..+++|-..+-+++.+|+.+ |....+..++++++--++||.+++.++.|++.. |.+.
T Consensus 27 ~~~~~~~~~~~~~~-~-~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~l 104 (319)
T COG0385 27 PIFPETFGWLGSAI-P-IALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLL 104 (319)
T ss_pred HhccccchhhhHHH-H-HHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHh
Confidence 33445555555433 3 344788888888889887665 556777778999999999999999999888875 5555
Q ss_pred eecccCCcchhHHHHHHhhhh
Q 022430 109 GCCSAGNMGNLLLIIVPAVCE 129 (297)
Q Consensus 109 ~~~~f~Nt~~Lpl~l~~al~~ 129 (297)
.+|.=+-+-+ ++..++++
T Consensus 105 l~~~Pggv~S---~~~t~lAk 122 (319)
T COG0385 105 LGCCPGGVAS---NAMTYLAK 122 (319)
T ss_pred eeeCCCchhH---HHHHHHhc
Confidence 5555444444 44455543
No 33
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=46.77 E-value=1.7e+02 Score=29.08 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=53.6
Q ss_pred ccCCCChhH---HhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHH--HHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 022430 31 RIDLLGHSV---THSLNNLVFYVFNPALIGSNLAETITYQSLISLWFM--PVNILLSFLIGSALAWILIKITRTPPHLQG 105 (297)
Q Consensus 31 ~~~~l~~~~---~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i--~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg 105 (297)
-.|++|++- .++++|++.+-++|++++--=....+++++.+..-. .+.++.+.+-..+.++++.|.++.-+-..+
T Consensus 286 ~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsA 365 (414)
T PF03390_consen 286 AFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESA 365 (414)
T ss_pred HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 689999765 678899999999999887654454688888875322 222233334445556888899987766555
Q ss_pred eeee
Q 022430 106 LVIG 109 (297)
Q Consensus 106 ~~i~ 109 (297)
.+..
T Consensus 366 ItaG 369 (414)
T PF03390_consen 366 ITAG 369 (414)
T ss_pred HHhh
Confidence 5433
No 34
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=45.90 E-value=2.2e+02 Score=29.05 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHH
Q 022430 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLS 82 (297)
Q Consensus 16 ~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~ 82 (297)
.+++++.+|.-+| +|.|+++.-.+|.+.+.=-+...|..+|..+.+++ ..|-.-....|+..++.
T Consensus 82 G~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sni-asDAg~Vvl~PL~a~iF 146 (502)
T PF03806_consen 82 GLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNI-ASDAGYVVLPPLAAMIF 146 (502)
T ss_pred HHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhcc-cccceeEeHHhhHHHHH
Confidence 3445555555555 38999999999999999999999999999999984 44444344455554443
No 35
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=45.53 E-value=81 Score=31.80 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHH
Q 022430 19 LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFL 84 (297)
Q Consensus 19 li~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~ 84 (297)
+...+|.-.| +|.|+++.-.++.+++.-=++.+|..+|..+.++ +.+|..-...+|+..++...
T Consensus 96 Lv~mLGigvA-E~SGll~alm~~~~~~~pk~llt~~vvfigi~s~-~asDaayVVlpPlaAmiF~a 159 (516)
T COG2978 96 LVVMLGIGVA-ERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSH-IASDAAYVVLPPLAAMIFIA 159 (516)
T ss_pred HHHHHhhhhh-hhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHH-HHhhcceeEecchHHHHHHH
Confidence 3344454445 4899999999999999999999999999999999 67777766667776655443
No 36
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=44.59 E-value=77 Score=30.13 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHH-HHHHHHHHHHHHHH
Q 022430 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPV-NILLSFLIGSALAW 91 (297)
Q Consensus 13 ~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v-~~~~~~~i~~~lg~ 91 (297)
+.+-.++=..+|+++. -+|++.|+.+++-+- +..|-+-| .++..++++++.+-....+ ..+++.+++....+
T Consensus 170 ~lv~~ilPlliG~ilG-----NLD~~~r~fl~~~~~-~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 170 VFVGAVLPFLVGFALG-----NLDPELRDFFSKAVQ-TLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHHHHHHHHh-----cCCHHHHHHhccCCC-eeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 3445555567788555 489999999988553 55666555 5888889999988654333 34667778888888
Q ss_pred HHHHHhcCCCcccceeeeecccCCcchhHHHHHHh
Q 022430 92 ILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (297)
Q Consensus 92 l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~a 126 (297)
+.-|.+.-.+..-| +-+.++.+|...-|-.+.++
T Consensus 243 ~~dr~~~g~~g~aG-~A~sstAGnAvatPaavA~a 276 (314)
T TIGR00793 243 LADKFIGGGDGTAG-IAASSSAGAAVATPVLIAEM 276 (314)
T ss_pred HHHHHhcCCCCchh-hHHHHHHHHhhhhHHHHHHh
Confidence 88887742222223 34456788988889887555
No 37
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=43.65 E-value=1.3e+02 Score=30.41 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhh
Q 022430 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW 73 (297)
Q Consensus 17 vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~ 73 (297)
++..+++|.+++ .....+. ...=..+++.+++|.++|..=.+ ++.+++.+.+
T Consensus 25 ~v~lil~Gi~lg--~~~~~~~--~~~~~~~~~~~~Lp~lLF~~g~~-~~~~~l~~~~ 76 (525)
T TIGR00831 25 PIALILAGLLLG--LAGLLPE--VPLDREIVLFLFLPPLLFEAAMN-TDLRELRENF 76 (525)
T ss_pred HHHHHHHHHHHH--hccccCC--CCCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 456667788777 3322221 11112466789999999987765 4998888765
No 38
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.24 E-value=46 Score=24.61 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 022430 72 LWFMPVNILLSFLIGSALAWILIK 95 (297)
Q Consensus 72 ~~~i~v~~~~~~~i~~~lg~l~~~ 95 (297)
.|...+...++.++|.+.|++++|
T Consensus 3 l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778888889999988876
No 39
>PRK01844 hypothetical protein; Provisional
Probab=40.60 E-value=50 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.522 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 022430 72 LWFMPVNILLSFLIGSALAWILIK 95 (297)
Q Consensus 72 ~~~i~v~~~~~~~i~~~lg~l~~~ 95 (297)
.|...+..++..++|.++|+.++|
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666788889999988876
No 40
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=39.95 E-value=2.5e+02 Score=27.03 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=54.4
Q ss_pred HHHHHHHHH-HHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhh----HHHHHHHHHHHHHHHHH
Q 022430 16 KVLLVTALG-LVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW----FMPVNILLSFLIGSALA 90 (297)
Q Consensus 16 ~vlli~~~G-~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~----~i~v~~~~~~~i~~~lg 90 (297)
+-..++-+| .+.. ..|+++ .......-|-|-.+|++|+.-+-+- +..++.+.. ++.+.+..+.++|++++
T Consensus 33 pa~v~iy~gamff~--t~Glfs--~~S~~y~~v~n~llpamI~lmLlqc-d~Rki~Klg~rll~ifli~sv~~vlGfIl~ 107 (384)
T COG5505 33 PAAVIIYAGAMFFT--TVGLFS--VESPVYDTVWNYLLPAMIPLMLLQC-DVRKIFKLGRRLLFIFLISSVGTVLGFILA 107 (384)
T ss_pred hHHHHHHHHHHHHh--hccccc--ccCcHHHHHHHHHHHHHHHHHHHHc-cHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Confidence 333444444 3344 589995 6677788888999999999988765 888887765 34444456667788888
Q ss_pred HHHHHHhcC
Q 022430 91 WILIKITRT 99 (297)
Q Consensus 91 ~l~~~i~~~ 99 (297)
+.+.|-+..
T Consensus 108 yp~~ksf~g 116 (384)
T COG5505 108 YPLLKSFIG 116 (384)
T ss_pred HHHHhhhcc
Confidence 777775554
No 41
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=39.72 E-value=1.8e+02 Score=28.21 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=71.8
Q ss_pred ccCCCChhHHhhhhHHH-----HHHHhhHHHHHHhhccCCcchhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 022430 31 RIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLAETITYQSLISL--WFMPVNILLSFLIGSALAWILIKITRTPPHL 103 (297)
Q Consensus 31 ~~~~l~~~~~~~ls~lv-----~~vflP~Lif~~l~~~~t~~~l~~~--~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~ 103 (297)
+.|++|++..+..+.+. .++|.-||+-.++-.- +.+-|.+- .++|. .++..+.+.+++.++..++..+..+
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m-~Rk~Lik~~~r~~p~-il~g~~~a~~~g~lvG~l~G~~~~~ 82 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGM-NRKLLLKALMRFIPP-ALIGMVLAVIVGILVGTLFGLGFDH 82 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 68999999999998854 4688889999998765 76666552 22332 2345555666666777776665543
Q ss_pred c--ceeeeecccCC-cchhHHHHHHhhhhcCCCCCC-CccccccchhhHHHHHHH
Q 022430 104 Q--GLVIGCCSAGN-MGNLLLIIVPAVCEESNSPFG-DTSVCSSYGKAYASLSMA 154 (297)
Q Consensus 104 r--g~~i~~~~f~N-t~~Lpl~l~~al~~~~~~~Fg-~~~~~~~~g~~Y~~~~~~ 154 (297)
- -.++...+-|| -|.+|+..+.+= ..| +.++-..+.++.+.+-..
T Consensus 83 ~~~~i~lPIm~GG~GaGavPLS~~Y~~------~~g~~~~~~~s~~ip~~~igni 131 (347)
T TIGR00783 83 SLMYIVMPIMAGGVGAGIVPLSIIYSA------ITGRSSEEIFSQLIPAVIIGNI 131 (347)
T ss_pred hhheeeehhcCCCcccchhhHHHHHHH------HhCCCHHHHHHHHHHHHHHHHH
Confidence 2 33444444455 457999987661 133 233344455555554444
No 42
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.16 E-value=2.1e+02 Score=29.77 Aligned_cols=83 Identities=13% Similarity=0.239 Sum_probs=48.1
Q ss_pred hHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCc
Q 022430 38 SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNM 116 (297)
Q Consensus 38 ~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~-~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt 116 (297)
+..+.+.-+ -.+++ .+.|.+++-++++..+.+. |.+....++.++.=.+..++.+|.++.|.+.+-. + +...+--
T Consensus 261 ~le~~i~pf-~~lll-~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~-~-gl~L~~~ 336 (621)
T PRK03562 261 ALESDIEPF-KGLLL-GLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRW-F-AVLLGQG 336 (621)
T ss_pred HHHHHHHHH-HHHHH-HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHH-H-HHHHhcc
Confidence 334444444 25667 4788999999999887654 4444333444444456667888899888664322 2 2233334
Q ss_pred chhHHHHH
Q 022430 117 GNLLLIIV 124 (297)
Q Consensus 117 ~~Lpl~l~ 124 (297)
|-..+.+.
T Consensus 337 Gef~~vl~ 344 (621)
T PRK03562 337 GEFAFVVF 344 (621)
T ss_pred ccHHHHHH
Confidence 44555543
No 43
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=38.67 E-value=1e+02 Score=27.12 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcc-CCcchhhhhh-HHHHHHHHHHHHHHHHHHHHHHHh
Q 022430 20 VTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET-ITYQSLISLW-FMPVNILLSFLIGSALAWILIKIT 97 (297)
Q Consensus 20 i~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~-~t~~~l~~~~-~i~v~~~~~~~i~~~lg~l~~~i~ 97 (297)
...+|.++. +....+-+....++..+.++.+ .++-.+++++ ...+++.+.. ...+.++.+.+-+.+.|++..+++
T Consensus 4 ~li~Gi~lG--~~~~~~~~~~~~~~~~~L~lLL-F~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 4 ALILGILLG--YFLRPPFSLIDKISTYALYLLL-FLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred eHHHHHHHH--HHhcccccccccHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566555 4444442223455555554444 4445566665 3455666443 344444555555555667777777
Q ss_pred cCCCc
Q 022430 98 RTPPH 102 (297)
Q Consensus 98 ~~p~~ 102 (297)
..|-+
T Consensus 81 ~~~~~ 85 (191)
T PF03956_consen 81 GLSLK 85 (191)
T ss_pred cCCHH
Confidence 66633
No 44
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=37.84 E-value=1.6e+02 Score=28.22 Aligned_cols=122 Identities=15% Similarity=0.191 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022430 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKI 96 (297)
Q Consensus 17 vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~lg~l~~~i 96 (297)
++++...|.+++. ..+=.-.....++++-.|. ++.-+++.-|..++.+--.+.++.++..+.-.++.+...|+
T Consensus 250 ~v~vsi~gLi~aL--tPf~~lpgs~elgtv~lY~-----~v~vias~Ad~~~i~taP~~i~~gf~il~~h~~v~f~~~Kl 322 (384)
T COG5505 250 LVLVSITGLIIAL--TPFERLPGSQELGTVLLYL-----FVVVIASPADLRLIVTAPLIILFGFIILISHLAVSFAAGKL 322 (384)
T ss_pred ehHHHHHHHHHHh--CccccCCchhhhhHHHHHH-----HHHHhccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777877773 3222334556677766654 34667777666666663333333344455566777888899
Q ss_pred hcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhh
Q 022430 97 TRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGA 157 (297)
Q Consensus 97 ~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~ 157 (297)
+|++-..-+ ..+..|.|..--+=+.|.+++.. -..-|+..-.+.++++|
T Consensus 323 F~~dL~~i~----~AslAniGG~~sAp~~A~A~nr~--------lv~~gvlmg~lG~~iGn 371 (384)
T COG5505 323 FRVDLEEIL----LASLANIGGPTSAPAMAIAKNRE--------LVAPGVLMGTLGYLIGN 371 (384)
T ss_pred HHhHHHHHH----HHHHhccCCccchhHHHhhcCch--------hcchHHHHHHHHHHHHh
Confidence 998855433 46777887654443344433311 12235555555555555
No 45
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.96 E-value=25 Score=24.92 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 022430 73 WFMPVNILLSFLIGSALAWILIKIT 97 (297)
Q Consensus 73 ~~i~v~~~~~~~i~~~lg~l~~~i~ 97 (297)
+++.+..++++++|.++|+++....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888899999999877543
No 46
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=36.68 E-value=2.5e+02 Score=23.45 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=33.1
Q ss_pred HHHHHhhccCCcchhhh---hhH-HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 022430 55 LIGSNLAETITYQSLIS---LWF-MPVNILLSFLIGSALAWILIKITRTPPH 102 (297)
Q Consensus 55 Lif~~l~~~~t~~~l~~---~~~-i~v~~~~~~~i~~~lg~l~~~i~~~p~~ 102 (297)
++-..++.+++.+++.+ ++. ..+..+++.+++.+.+|++.|..+.|..
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ 106 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPL 106 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 34466777777665554 443 3444467778899999999999998854
No 47
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=36.46 E-value=1.7e+02 Score=27.65 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=33.4
Q ss_pred HHHHHHhhccCCcch---hhhhhHHHH-HHHHHHHHHHHHHHHHHHHhcCCCc
Q 022430 54 ALIGSNLAETITYQS---LISLWFMPV-NILLSFLIGSALAWILIKITRTPPH 102 (297)
Q Consensus 54 ~Lif~~l~~~~t~~~---l~~~~~i~v-~~~~~~~i~~~lg~l~~~i~~~p~~ 102 (297)
..+-..++.++|.+. +.++|+..+ ..+.+.+++.+.+|+..|..+.++.
T Consensus 32 ~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~ 84 (318)
T PF05145_consen 32 AILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA 84 (318)
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 345566777777664 444554333 3467778888999999999888754
No 48
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.49 E-value=34 Score=28.04 Aligned_cols=22 Identities=9% Similarity=0.489 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 022430 79 ILLSFLIGSALAWILIKITRTP 100 (297)
Q Consensus 79 ~~~~~~i~~~lg~l~~~i~~~p 100 (297)
+++.+++|+++|+++.|.....
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4677888999999998887544
No 49
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=35.07 E-value=1.2e+02 Score=28.74 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=36.4
Q ss_pred HHHHhhccCCcchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccc
Q 022430 56 IGSNLAETITYQSLIS----LWFMPVNILLSFLIGSALAWILIKIT-RTPPHLQ 104 (297)
Q Consensus 56 if~~l~~~~t~~~l~~----~~~i~v~~~~~~~i~~~lg~l~~~i~-~~p~~~r 104 (297)
+...++-+++.+|+.+ ++.+.+..+..+++.-+++|.+++.+ +.++..+
T Consensus 52 mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~l~ 105 (328)
T TIGR00832 52 MMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYI 105 (328)
T ss_pred HHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4555667778887766 56677777888889999999999975 7666543
No 50
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=34.95 E-value=65 Score=21.93 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=21.5
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022430 66 YQSLISLWFMPVNILLSFLIGSALAWILIKIT 97 (297)
Q Consensus 66 ~~~l~~~~~i~v~~~~~~~i~~~lg~l~~~i~ 97 (297)
.+++.++.|-.+.+++..++|+.++..+.+..
T Consensus 8 ~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~ 39 (53)
T PF05552_consen 8 LDQIIAYLPNIVGAILILIVGWWVAKFVRKLV 39 (53)
T ss_dssp -----GGHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888888777655
No 51
>COG0679 Predicted permeases [General function prediction only]
Probab=32.87 E-value=4.1e+02 Score=24.78 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHH--HHHHHHHHHHHH
Q 022430 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILL--SFLIGSALAWIL 93 (297)
Q Consensus 16 ~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~--~~~i~~~lg~l~ 93 (297)
|.+.-..+|..++ ..|+--++....--+..-+...||-++. ++-++......+...-.+.... -.++.-++++++
T Consensus 169 P~i~a~i~g~~~~--~~~i~lP~~~~~~~~~l~~a~~pl~li~-lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 169 PLIIALILGLLLN--LLGISLPAPLDTAVDLLASAASPLALIA-LGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred cHHHHHHHHHHHH--HcCCCCcHHHHHHHHHHHHhhhhHHHHH-HhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666 5666666655555566666777776653 3333343333333222222222 366777777778
Q ss_pred HHHhcCCCcccceeee
Q 022430 94 IKITRTPPHLQGLVIG 109 (297)
Q Consensus 94 ~~i~~~p~~~rg~~i~ 109 (297)
.+.++.+...+...+.
T Consensus 246 ~~~~~l~~~~~~v~vl 261 (311)
T COG0679 246 AKLLGLSGLALQVLVL 261 (311)
T ss_pred HHHcCCChHHHHHHHH
Confidence 8888877776654433
No 52
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=32.71 E-value=59 Score=31.80 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=21.3
Q ss_pred hccChhHHHHHHHHHhhcccccccccc
Q 022430 254 MIFAPSTIAAIIGFVIGTISPFRKVIV 280 (297)
Q Consensus 254 ~~~~Pp~iaai~g~ivG~vP~Lr~~~f 280 (297)
.|+-=-++|.++||+++..-||+++=+
T Consensus 309 ~i~~lL~ig~~~gFv~AttKpL~~v~v 335 (387)
T PF12751_consen 309 SILLLLVIGFAIGFVFATTKPLTDVQV 335 (387)
T ss_pred HHHHHHHHHHHHHhhhhcCcccccceE
Confidence 333356899999999999999988644
No 53
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.21 E-value=39 Score=25.15 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022430 4 LDLFEVALMPILKVLLVTALGLVLA 28 (297)
Q Consensus 4 ~~~~~~a~~~vl~vlli~~~G~~la 28 (297)
|+.|+.++...+-+++.+.+||+..
T Consensus 1 M~t~lltFg~Fllvi~gMsiG~I~k 25 (77)
T COG2991 1 MTTFLLTFGIFLLVIAGMSIGYIFK 25 (77)
T ss_pred CccHHHHHHHHHHHHHHHhHhhhee
Confidence 3467777777788888889998876
No 54
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=31.90 E-value=3.1e+02 Score=27.12 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhccCCCChhH---HhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhh-HHHHHHHHHHHH-HHHHHHHH
Q 022430 19 LVTALGLVLAIDRIDLLGHSV---THSLNNLVFYVFNPALIGSNLAETITYQSLISLW-FMPVNILLSFLI-GSALAWIL 93 (297)
Q Consensus 19 li~~~G~~la~~~~~~l~~~~---~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~-~i~v~~~~~~~i-~~~lg~l~ 93 (297)
.++.+=.++. ..|+++++. .+.++++.-+=++=.|++.-=....+++++.+-. +--+...++.++ ....+|++
T Consensus 295 ~MIil~a~lk--~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~ 372 (438)
T COG3493 295 FMIILVAILK--AANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFV 372 (438)
T ss_pred HHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 4445455555 789999876 5677777776666666654333334777777632 111222233333 44556888
Q ss_pred HHHhcCCCcccceeeeecccCCcch
Q 022430 94 IKITRTPPHLQGLVIGCCSAGNMGN 118 (297)
Q Consensus 94 ~~i~~~p~~~rg~~i~~~~f~Nt~~ 118 (297)
.|+.+.-+-... +++.+..+|.|.
T Consensus 373 grl~~~YPVEaA-I~aglC~a~~GG 396 (438)
T COG3493 373 GRLMGFYPVEAA-ITAGLCMANMGG 396 (438)
T ss_pred HHHhcCCchHHH-HHHhHHhcCCCC
Confidence 888876555444 344233344443
No 55
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=31.23 E-value=1.1e+02 Score=31.47 Aligned_cols=65 Identities=23% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhHHh----------------hhhH-----------HHHHHHhhHHHHHHhhccCCc
Q 022430 14 ILKVLLVTALGLVLAIDRIDLLGHSVTH----------------SLNN-----------LVFYVFNPALIGSNLAETITY 66 (297)
Q Consensus 14 vl~vlli~~~G~~la~~~~~~l~~~~~~----------------~ls~-----------lv~~vflP~Lif~~l~~~~t~ 66 (297)
++-+.+.++.|+++.++|..|++|.... ..++ +-|.+++|..+|.+-.+- +.
T Consensus 41 i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~l-~k 119 (575)
T KOG1965|consen 41 ILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYSL-KK 119 (575)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhccccee-ch
Confidence 4556677888998887777799988654 3344 788999999999887654 44
Q ss_pred chh-hhhhHHHHHH
Q 022430 67 QSL-ISLWFMPVNI 79 (297)
Q Consensus 67 ~~l-~~~~~i~v~~ 79 (297)
.+. .++..+..+.
T Consensus 120 ~~fF~n~~si~~fa 133 (575)
T KOG1965|consen 120 KQFFRNIGSILLFA 133 (575)
T ss_pred hhhhhhhHHHHHhh
Confidence 333 3344444444
No 56
>PRK11677 hypothetical protein; Provisional
Probab=30.97 E-value=57 Score=27.17 Aligned_cols=22 Identities=9% Similarity=0.357 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 022430 79 ILLSFLIGSALAWILIKITRTP 100 (297)
Q Consensus 79 ~~~~~~i~~~lg~l~~~i~~~p 100 (297)
+++.+++|.++|+++.|.....
T Consensus 6 a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccch
Confidence 3467788999999999876433
No 57
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=30.95 E-value=2.4e+02 Score=29.02 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=25.4
Q ss_pred hHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHH
Q 022430 44 NNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNI 79 (297)
Q Consensus 44 s~lv~~vflP~Lif~~l~~~~t~~~l~~-~~~i~v~~ 79 (297)
+.+.+.+++|.++|..=... +..++.+ ++.+...+
T Consensus 65 ~~lf~~~~LPpIlFe~g~~l-~~~~f~~n~~~Il~lA 100 (559)
T TIGR00840 65 SSYFFLYLLPPIVLDAGYFM-PQRNFFENLGSILIFA 100 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 56788899999999887665 7777776 44444444
No 58
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=30.75 E-value=6.1e+02 Score=26.06 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=46.3
Q ss_pred CCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHHHHHHHHHHHHHHHHH-HHhcCCCc
Q 022430 34 LLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWILI-KITRTPPH 102 (297)
Q Consensus 34 ~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~-~~~i~v~~~~~~~i~~~lg~l~~-~i~~~p~~ 102 (297)
-+++.+...+..+=..+|+=|.=. +-+.++ .+.+.+ .|.+.+..++..++..++++++. +++|.+..
T Consensus 440 ~~p~~a~~~l~~~GL~lFla~vG~-~aG~~f-~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 508 (562)
T TIGR03802 440 NIPSSASWLLKDLGLALFIAVVGL-SAGPQA-VTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPA 508 (562)
T ss_pred ecCHHHHHHHHHHhHHHHHHHHHH-hhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 388888889999999999866433 333332 334444 35555566677778888888888 68998855
No 59
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=29.39 E-value=4.2e+02 Score=26.01 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH--HHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN--ILLSFLIGSALAWI 92 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~--~~~~~~i~~~lg~l 92 (297)
.+++.+...|-+++ ..|+ ++-.+...+-..|+.+ -++-..++.+.+.|...++--+.+. .++.+.++.+-|.+
T Consensus 251 ~pLig~Lm~GNllr--EsGv--~rLs~taqn~l~nivT-ifLGl~vG~t~~A~~FL~~~tl~Il~LGlvAF~~~tagGvl 325 (399)
T TIGR03136 251 SPLILSFFLGVAIK--EAQI--EPYQNLLEKTLTYGST-LFLGLVLGVLCEASTLLDPRVSILLVLGITALLISGIGGVL 325 (399)
T ss_pred HHHHHHHHHHHHHH--HhCc--HHHHHHHHHHHHHHHH-HHHHHHhhhhccHHhhCChHHHHHHHHHHHHHHHhhhHHHH
Confidence 56777778898888 7886 5555555555555544 3445566777677877776544333 35666666666666
Q ss_pred HHHHh
Q 022430 93 LIKIT 97 (297)
Q Consensus 93 ~~~i~ 97 (297)
.+|+.
T Consensus 326 ~aK~m 330 (399)
T TIGR03136 326 GGWFV 330 (399)
T ss_pred HHHHH
Confidence 66654
No 60
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=29.22 E-value=2.8e+02 Score=26.82 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhhccCC---CChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH--HHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDL---LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN--ILLSFLIGSAL 89 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~---l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~--~~~~~~i~~~l 89 (297)
.+++.+..+|-+++ ..|+ +.+.+++.+.+++. +| +-..++.+.+.|...++--+.+. .++.+.++.+-
T Consensus 213 ~pLig~Lm~Gnl~r--Esgv~~rLs~taqn~l~nivT-i~----LGl~vGat~~a~~fL~~~tl~I~~LGl~Af~~~tag 285 (360)
T PF03977_consen 213 APLIGMLMFGNLLR--ESGVVERLSKTAQNELMNIVT-IF----LGLTVGATMTAETFLNPQTLKILVLGLVAFAFSTAG 285 (360)
T ss_pred HHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHH-HH----HHHHHHHhccHHHhcCHHHHHHHHHHHHHHHHHHhH
Confidence 56777788898888 8887 44666666666655 33 33455555566666665433333 34555555555
Q ss_pred HHHHHHHh
Q 022430 90 AWILIKIT 97 (297)
Q Consensus 90 g~l~~~i~ 97 (297)
|.+.+|+.
T Consensus 286 Gvl~~k~m 293 (360)
T PF03977_consen 286 GVLFAKLM 293 (360)
T ss_pred HHHHHHHH
Confidence 55555544
No 61
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.74 E-value=5.8e+02 Score=25.48 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=35.4
Q ss_pred cCCCcccceeeeecccCC-cc-hhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHHhhcc
Q 022430 98 RTPPHLQGLVIGCCSAGN-MG-NLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYL 172 (297)
Q Consensus 98 ~~p~~~rg~~i~~~~f~N-t~-~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll~~~~ 172 (297)
+.|+..|+.+++....++ .+ .+.+|+...||+. .+|= +++- |......+.|.+.....-.|+
T Consensus 156 W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s---~~GW------~sif----Y~~g~~g~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 156 WAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES---SLGW------PSIF----YVFGIVGLIWFILWFLFYSDS 219 (466)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc---CCCC------chHH----HHHHHHHHHHHHHHHHHhcCC
Confidence 457777877666555544 22 3555556678775 3553 3443 444555567777666555553
No 62
>PRK04972 putative transporter; Provisional
Probab=28.32 E-value=3.9e+02 Score=27.42 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=46.6
Q ss_pred cCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHHHHHHHHHHHHHHHHH-HHhcCCCc
Q 022430 32 IDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWILI-KITRTPPH 102 (297)
Q Consensus 32 ~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~-~~~i~v~~~~~~~i~~~lg~l~~-~i~~~p~~ 102 (297)
.+-+|+.+...+..+=..+|+=|.=.++ +..+ .+.+.+ .|.+.+...+.+++..++++++. +++|.+..
T Consensus 433 ~~~~p~~a~~~l~~~GL~lFla~vGl~a-G~~f-~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~ 503 (558)
T PRK04972 433 FGYIPQGALNMVKEFGLMVFMAGVGLSA-GSGI-NNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA 503 (558)
T ss_pred ceeeCHHHHHHHHHHhHHHHHHHHHHhh-hHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 4449999999999999999997654333 3332 234444 45555555666666677777777 68888855
No 63
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=28.13 E-value=5.6e+02 Score=24.79 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHh
Q 022430 79 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (297)
Q Consensus 79 ~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~a 126 (297)
.++.+.+-+.++++..|..+.|.+...... ..+.+|.--+-+++.-+
T Consensus 253 l~iy~~~~~~i~~~i~k~lgl~y~~~~~~~-ft~aSNnfeLAiAvAi~ 299 (342)
T COG0798 253 LLIYFLLMFFISYFIAKALGLPYEDAAALV-FTGASNNFELAIAVAIA 299 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhhhcee-eeeccccHHHHHHHHHH
Confidence 357777888899999999999987665532 33445544444444333
No 64
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=27.57 E-value=5.4e+02 Score=25.27 Aligned_cols=89 Identities=15% Similarity=0.253 Sum_probs=49.8
Q ss_pred CChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhH-HHHHHHHHHHHHHHHH-HHHHHHhcCCCcccceeeeecc
Q 022430 35 LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWF-MPVNILLSFLIGSALA-WILIKITRTPPHLQGLVIGCCS 112 (297)
Q Consensus 35 l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~-i~v~~~~~~~i~~~lg-~l~~~i~~~p~~~rg~~i~~~~ 112 (297)
++++..+.++.+...+|+ ...++ ++++.++.++|. +.+..+.-.++..+.. |+..|+++.+ +.+.++++.-
T Consensus 270 ~~~~~i~~I~~~sLdlfl----~~Alm-sL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~--ydaaV~~ag~ 342 (398)
T TIGR00210 270 VAERAVSVIGNVSLSLFL----AIALM-SLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKD--YDAAVLCAGH 342 (398)
T ss_pred cchHHHHHHHHHHHHHHH----HHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccch--HHHHHHhccc
Confidence 445577778877777766 33443 347888888764 4443444444444344 4555666533 4444333322
Q ss_pred cC-Ccch--hHHHHHHhhhhc
Q 022430 113 AG-NMGN--LLLIIVPAVCEE 130 (297)
Q Consensus 113 f~-Nt~~--Lpl~l~~al~~~ 130 (297)
+| .+|. -.+..+.|+|+.
T Consensus 343 ~G~~lGatptaianm~av~~~ 363 (398)
T TIGR00210 343 CGFGLGATPTAIANMQAVTER 363 (398)
T ss_pred ccccccchHHHHHHHHHHHhc
Confidence 32 2333 456667899886
No 65
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.10 E-value=6e+02 Score=25.69 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 022430 12 MPILKVLLVTALGLVLAIDRID 33 (297)
Q Consensus 12 ~~vl~vlli~~~G~~la~~~~~ 33 (297)
-.+.-++..+..|++.- |.+
T Consensus 318 ~~~~g~v~~i~ag~lsd--r~~ 337 (495)
T KOG2533|consen 318 YDVGGIVGLILAGYLSD--RLK 337 (495)
T ss_pred HHhhhHHHHHHHHHHHH--HHh
Confidence 34556667777787666 655
No 66
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=25.59 E-value=1.4e+02 Score=28.89 Aligned_cols=52 Identities=27% Similarity=0.515 Sum_probs=34.1
Q ss_pred HHhhHHHHHHhhccCCcchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCc
Q 022430 50 VFNPALIGSNLAETITYQSLISLWFMPVN-ILLSFLIGSALAWILIKITRTPPH 102 (297)
Q Consensus 50 vflP~Lif~~l~~~~t~~~l~~~~~i~v~-~~~~~~i~~~lg~l~~~i~~~p~~ 102 (297)
+.+=|.+-.++..+ ..+++++.|+..+. .+.+..++.++||+..|.-+.|+.
T Consensus 65 ~ilG~~ig~~~t~s-~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~ 117 (352)
T COG3180 65 VILGIMIGASLTPS-VLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGN 117 (352)
T ss_pred HHHHHHHhhhcCHH-HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 44445555555444 45566666665555 467778899999999988777733
No 67
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=25.56 E-value=66 Score=25.24 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccce
Q 022430 71 SLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGL 106 (297)
Q Consensus 71 ~~~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~ 106 (297)
++|...+..++.+++.+++-+++.++.+.|...+.+
T Consensus 15 sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~ 50 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRW 50 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 466667777777888888889999999999766544
No 68
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=25.53 E-value=5e+02 Score=25.84 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=25.7
Q ss_pred hhHHhhhhHHHHHHHhhHHHHHHhhccCCc
Q 022430 37 HSVTHSLNNLVFYVFNPALIGSNLAETITY 66 (297)
Q Consensus 37 ~~~~~~ls~lv~~vflP~Lif~~l~~~~t~ 66 (297)
++..+.++..|.++++|..-|.|.+-+++.
T Consensus 259 ~rle~~L~p~V~~~ILPLFAFANaGV~l~~ 288 (423)
T PRK14853 259 EHLEHRLRPLSAGVAVPVFAFFSAGVAIGG 288 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheecC
Confidence 445678999999999999999999988765
No 69
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=23.99 E-value=70 Score=31.42 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccee
Q 022430 71 SLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLV 107 (297)
Q Consensus 71 ~~~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~ 107 (297)
+++...+..++.+++-+++=|++.++++.|.+.++|+
T Consensus 40 Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~ 76 (400)
T COG3071 40 SLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWF 76 (400)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3566667777888888999999999999998888874
No 70
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.85 E-value=66 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=14.8
Q ss_pred hhhccChhHHHHHHHHHhh
Q 022430 252 LKMIFAPSTIAAIIGFVIG 270 (297)
Q Consensus 252 l~~~~~Pp~iaai~g~ivG 270 (297)
-+++.+|.+.|.+.++|||
T Consensus 11 WhDLAAP~iagIi~s~iv~ 29 (35)
T PF13940_consen 11 WHDLAAPIIAGIIASLIVG 29 (35)
T ss_pred HHHhHhHHHHHHHHHHHHH
Confidence 3667888888888888886
No 71
>PF06899 WzyE: WzyE protein; InterPro: IPR010691 This family consists of several WzyE proteins, which appear to be specific to Enterobacteria. Members of this family are described as putative ECA polymerases this has been found to be incorrect []. The function of this family is unknown.; GO: 0016021 integral to membrane
Probab=23.53 E-value=1.2e+02 Score=30.11 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=27.4
Q ss_pred hccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcc
Q 022430 30 DRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET 63 (297)
Q Consensus 30 ~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~ 63 (297)
++..+++.+....--|--++.++||++..-..++
T Consensus 143 ~Ysqifs~~v~gvAlkrffYffiPAmLvvyfL~~ 176 (448)
T PF06899_consen 143 SYSQIFSSDVSGVALKRFFYFFIPAMLVVYFLKQ 176 (448)
T ss_pred hHhHHHhhccccHHHHHHHHHHHHHHHHhheecc
Confidence 4567777777777788889999999998877776
No 72
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.52 E-value=1e+02 Score=24.22 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhccc
Q 022430 260 TIAAIIGFVIGTIS 273 (297)
Q Consensus 260 ~iaai~g~ivG~vP 273 (297)
++|+|+|+|.|..-
T Consensus 33 ti~aiVg~i~Gf~~ 46 (101)
T KOG4112|consen 33 TIGAIVGFIYGFAQ 46 (101)
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999988653
No 73
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=22.54 E-value=8.1e+02 Score=25.50 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCChhH--HhhhhH--HHHHHHhhHHHHHHhhccCCcch
Q 022430 4 LDLFEVALMPILKVLLVTA----LGLVLAIDRIDLLGHSV--THSLNN--LVFYVFNPALIGSNLAETITYQS 68 (297)
Q Consensus 4 ~~~~~~a~~~vl~vlli~~----~G~~la~~~~~~l~~~~--~~~ls~--lv~~vflP~Lif~~l~~~~t~~~ 68 (297)
++.+-..+.|+++++.-.+ +..++. ..|+++++. -..++. =.+..|||.++-.+.++.+....
T Consensus 100 ~~~is~if~PiIP~l~a~Gll~gl~~ll~--~~g~~~~~s~~~~~l~~i~~a~f~fLPiliays~Ak~~~~np 170 (610)
T TIGR01995 100 IDLISGVFTPLLPALAGAGLLKAVLTLLT--MTGLISADSQTYQILNAMGDAVFYFLPILLAITAAKRFKVNP 170 (610)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH--hccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4455566667776664332 233444 567877632 222221 14567999999999999876554
No 74
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=22.38 E-value=6.3e+02 Score=23.45 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhH
Q 022430 6 LFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPA 54 (297)
Q Consensus 6 ~~~~a~~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~ 54 (297)
++.+....++.+++-...||.++ |.+.-.++ -...-+.....+|.
T Consensus 79 liva~~~t~l~i~~~~laaYala--r~~f~g~~--~~~~~~l~~lm~P~ 123 (281)
T COG0395 79 LIVAVGSTVLSLLLSSLAAYALA--RFRFKGRK--LLFLLLLLTLMLPA 123 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhccCcHH--HHHHHHHHHHHhhH
Confidence 34455556688888899999999 76544444 33333444446666
No 75
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=22.33 E-value=1.8e+02 Score=27.79 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHHhhccCCcchhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022430 54 ALIGSNLAETITYQSLISL-WFMPVNILLSFLIGSALAWILIKITRTP 100 (297)
Q Consensus 54 ~Lif~~l~~~~t~~~l~~~-~~i~v~~~~~~~i~~~lg~l~~~i~~~p 100 (297)
.+.+--.+.+++.++.... +-..+..+.=++++.++|+++.|++..+
T Consensus 52 g~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~ 99 (314)
T PF03812_consen 52 GVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPE 99 (314)
T ss_pred HHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4445556778887766553 3344444566778999999999999766
No 76
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=22.21 E-value=2.9e+02 Score=25.68 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhh-hhhHHHHHHHHHHHHHHHHHHHHH
Q 022430 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLI-SLWFMPVNILLSFLIGSALAWILI 94 (297)
Q Consensus 16 ~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~-~~~~i~v~~~~~~~i~~~lg~l~~ 94 (297)
|+++-+.+|..+. -.|+=-++....-=+.+-+...|+-++.-= -++...++. +++......++=.++.-++.+.+.
T Consensus 183 P~iia~i~Gl~~~--~~~i~lP~~l~~~l~~lg~~~~plaLl~lG-~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~ 259 (321)
T TIGR00946 183 PPLWAPLLSVILS--LVGFKMPGLILKSISILSGATTPMALFSLG-LALSPRKIKLGVRDAILALIVRFLVQPAVMAGIS 259 (321)
T ss_pred CChHHHHHHHHHH--HHhhcCcHHHHHHHHHHHHHHHHHHHHHHH-HhhChhhhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777 555544455555556666778887776533 333444443 445555556666777778888888
Q ss_pred HHhcCCCcccceeeeeccc
Q 022430 95 KITRTPPHLQGLVIGCCSA 113 (297)
Q Consensus 95 ~i~~~p~~~rg~~i~~~~f 113 (297)
+.++.+...+...+.+++.
T Consensus 260 ~~~~l~~~~~~~~vl~aa~ 278 (321)
T TIGR00946 260 KLIGLRGLELSVAILQAAL 278 (321)
T ss_pred HHhCCChHHHHHHHHHHcC
Confidence 8888887777665555443
No 77
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=22.11 E-value=5.1e+02 Score=22.21 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhh-hHHHHHHHHHHHHHHHHHHHH
Q 022430 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSFLIGSALAWIL 93 (297)
Q Consensus 15 l~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~-~~i~v~~~~~~~i~~~lg~l~ 93 (297)
..++.=..+|++-.+++.. ++.+....+.++-+.+|+=|. =.+-++++ .+.+++. +...+..++..+++.++++.+
T Consensus 28 G~L~vgL~~G~~~~~~~~~-~~~~~~~~l~~~GL~lFl~~V-Gl~aG~~F-~~~l~~~G~~~~~~~~~i~~~~~~~~~~~ 104 (169)
T PF06826_consen 28 GVLFVGLILGALGRTGPIF-LPISAPSFLRQLGLALFLAAV-GLSAGPGF-FSSLKRGGLKLLLLGVIITLVPLLIALVI 104 (169)
T ss_pred HHHHHHHHHHHhhhccCCC-CCccHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666655522222 677888888888888888553 33333432 3344444 455666677788899999999
Q ss_pred HH-HhcCCCcc
Q 022430 94 IK-ITRTPPHL 103 (297)
Q Consensus 94 ~~-i~~~p~~~ 103 (297)
.| ++|.|...
T Consensus 105 ~~~~~~l~~~~ 115 (169)
T PF06826_consen 105 GRYLFKLNPGI 115 (169)
T ss_pred HHHHcCCCHHH
Confidence 98 99988554
No 78
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.65 E-value=4.8e+02 Score=24.58 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCh----hHHhhhhHHHHHHHhhHHHHH---HhhccCCcchhhhhhHHHHHHHHHHHHHHH
Q 022430 16 KVLLVTALGLVLAIDRIDLLGH----SVTHSLNNLVFYVFNPALIGS---NLAETITYQSLISLWFMPVNILLSFLIGSA 88 (297)
Q Consensus 16 ~vlli~~~G~~la~~~~~~l~~----~~~~~ls~lv~~vflP~Lif~---~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~ 88 (297)
+.+.-+.+|.+++ -.++..+ +.....-+..-+.+.|.-+|. +++.. ....-..+.......++=+++.-+
T Consensus 245 P~~~a~~lgli~~--~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~-~~~~~~~~~~~~~~~~~rlii~P~ 321 (385)
T PF03547_consen 245 PPLIAIILGLIIG--LIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARG-PRKSALGWKPSIIAVLVRLIILPL 321 (385)
T ss_pred cHHHHHHHHHHHH--HHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CcccchhhHHHHHHHHHHHHHHHH
Confidence 3445566666666 4444444 666666666677778877765 34332 112122333333335555566777
Q ss_pred HHHHHHHHhcCCCcccceeeee
Q 022430 89 LAWILIKITRTPPHLQGLVIGC 110 (297)
Q Consensus 89 lg~l~~~i~~~p~~~rg~~i~~ 110 (297)
+++.+.+.++.+....+..+..
T Consensus 322 i~~~~~~~~~l~~~~~~~~~~~ 343 (385)
T PF03547_consen 322 IGIGIVFLLGLDGDMARVLILQ 343 (385)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh
Confidence 7777888888776655554444
No 79
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=21.61 E-value=2e+02 Score=26.49 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=38.6
Q ss_pred HhhhhHHHHHHHhhHHHHHHhhccCCcch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022430 40 THSLNNLVFYVFNPALIGSNLAETITYQS----LISLWFMPVNILLSFLIGSALAWILIKITR 98 (297)
Q Consensus 40 ~~~ls~lv~~vflP~Lif~~l~~~~t~~~----l~~~~~i~v~~~~~~~i~~~lg~l~~~i~~ 98 (297)
++.-.++.|-+.+|+.+-..+.+-.+..+ ..++....+..+.+++.+++.-+.+.|..+
T Consensus 179 r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~~~ 241 (259)
T PF02673_consen 179 REEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRFLK 241 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566788999999999888877654322 234444555556666666666666666654
No 80
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=21.52 E-value=4.2e+02 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC
Q 022430 12 MPILKVLLVTALGLVLAIDRIDLLG 36 (297)
Q Consensus 12 ~~vl~vlli~~~G~~la~~~~~~l~ 36 (297)
..++-++.+.+....+. |.|.++
T Consensus 49 ~vi~~Il~vg~~~~vl~--~TGaid 71 (433)
T PRK09412 49 DVILIIMAVIAAIAAMQ--AAGGLD 71 (433)
T ss_pred HHHHHHHHHHHHHHHHH--HhCHHH
Confidence 34455555555555555 888888
No 81
>PRK00523 hypothetical protein; Provisional
Probab=21.39 E-value=1.7e+02 Score=21.76 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 022430 73 WFMPVNILLSFLIGSALAWILIK 95 (297)
Q Consensus 73 ~~i~v~~~~~~~i~~~lg~l~~~ 95 (297)
|...+..++..++|.++|+.++|
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445567888888888776
No 82
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=21.01 E-value=9.2e+02 Score=24.83 Aligned_cols=85 Identities=6% Similarity=0.094 Sum_probs=50.3
Q ss_pred hHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCc
Q 022430 38 SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMP-VNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNM 116 (297)
Q Consensus 38 ~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~-v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt 116 (297)
+....+..+ ..+|+ .+.|.+++-.+++..+.+.|+.. ...++.+++=.+..++.++.++.|++.+-. .....+..
T Consensus 258 ~l~~~i~pf-~~lll-~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~--~g~~L~~~ 333 (601)
T PRK03659 258 ELEIAIEPF-KGLLL-GLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQ--FAGVLSQG 333 (601)
T ss_pred HHHHHHHHH-HHHHH-HHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH--HHHHHhcc
Confidence 333445554 35666 56788889998998776655433 333444445566677888888887654321 12344555
Q ss_pred chhHHHHHHh
Q 022430 117 GNLLLIIVPA 126 (297)
Q Consensus 117 ~~Lpl~l~~a 126 (297)
|-+.+.+...
T Consensus 334 Gef~~vl~~~ 343 (601)
T PRK03659 334 GEFAFVLFSA 343 (601)
T ss_pred ccHHHHHHHH
Confidence 6566665443
No 83
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=20.80 E-value=1.1e+03 Score=25.63 Aligned_cols=146 Identities=9% Similarity=0.131 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccCCCChhHHhhhhHH---HHHHHhhHHHHHHhhccCCcchhhh
Q 022430 2 EILDLFEVALMPILK-------VLLVTALGLVLAIDRIDLLGHSVTHSLNNL---VFYVFNPALIGSNLAETITYQSLIS 71 (297)
Q Consensus 2 ~~~~~~~~a~~~vl~-------vlli~~~G~~la~~~~~~l~~~~~~~ls~l---v~~vflP~Lif~~l~~~~t~~~l~~ 71 (297)
|..-++..=+...++ .++..++|+++...-.|++++..-..-..+ +..+.+...+|..=.+- +...+.+
T Consensus 19 G~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L-~~~~Lrr 97 (810)
T TIGR00844 19 GIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVEL-PRKYMLK 97 (810)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhC-CHHHHHH
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhh---------------cCCCCC
Q 022430 72 LWFMPVNI-LLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCE---------------ESNSPF 135 (297)
Q Consensus 72 ~~~i~v~~-~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~---------------~~~~~F 135 (297)
.|..+... ++.+.++.++..++++.+-+.-.+...++.++...=|-- ++..++.+ +..+-+
T Consensus 98 ~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP---VLAssV~kg~~~~rvP~rLR~lL~~ESGl 174 (810)
T TIGR00844 98 HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDP---VLAQSVVSGTFAQKVPGHLRNLLSCESGC 174 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH---HHHHHHHhccccccCChHHHhHHhhhhhc
Q ss_pred CCccccccchhhHHHHHHHhhhH
Q 022430 136 GDTSVCSSYGKAYASLSMAVGAI 158 (297)
Q Consensus 136 g~~~~~~~~g~~Y~~~~~~~~~i 158 (297)
.| |++|.+++..+..+
T Consensus 175 ND-------GlAfpfv~LaL~ll 190 (810)
T TIGR00844 175 ND-------GLAFPFVFLSMDLL 190 (810)
T ss_pred cc-------HHHHHHHHHHHHHH
Done!