Query 022430
Match_columns 297
No_of_seqs 213 out of 535
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 05:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022430.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022430hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 23.7 11 0.00079 21.1 0.6 28 253-280 5-32 (34)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 15.7 60 0.0044 17.2 2.5 20 144-163 2-21 (30)
3 d1q90g_ f.23.26.1 (G:) PetG su 13.9 24 0.0018 19.1 0.5 11 264-274 6-16 (30)
4 d1v54g_ f.23.2.1 (G:) Mitochon 9.1 82 0.006 21.3 2.2 22 39-60 12-33 (84)
5 d2qjza1 a.40.1.1 (A:13-132) Mi 4.8 2.1E+02 0.015 20.3 2.6 44 252-296 23-73 (120)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.5 8.3E+02 0.06 19.8 10.1 54 49-102 44-101 (405)
7 d1oede_ f.36.1.1 (E:) Acetylch 4.2 1.9E+02 0.014 22.2 2.3 16 46-61 4-19 (260)
8 d1oedb_ f.36.1.1 (B:) Acetylch 3.7 2.3E+02 0.017 21.6 2.3 16 46-61 4-19 (250)
9 d1q90r_ f.23.12.1 (R:) ISP sub 3.7 1.2E+02 0.009 17.3 0.4 27 253-279 10-36 (39)
10 d1wdva_ d.116.1.1 (A:) Hypothe 3.1 1.6E+02 0.012 21.2 0.5 23 253-275 77-99 (150)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.68 E-value=11 Score=21.08 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=22.8
Q ss_pred hhccChhHHHHHHHHHhhcccccccccc
Q 022430 253 KMIFAPSTIAAIIGFVIGTISPFRKVIV 280 (297)
Q Consensus 253 ~~~~~Pp~iaai~g~ivG~vP~Lr~~~f 280 (297)
++|||=-+.|++.|...|..=|+-+-|+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 5678888999999999998777666554
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.75 E-value=60 Score=17.18 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=15.1
Q ss_pred chhhHHHHHHHhhhHHHHHH
Q 022430 144 YGKAYASLSMAVGAIYIWTY 163 (297)
Q Consensus 144 ~g~~Y~~~~~~~~~i~~wt~ 163 (297)
..++|++++.-+-.++++.+
T Consensus 2 e~i~yv~ifac~i~lfffai 21 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHH
Confidence 36789999888777777654
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=13.88 E-value=24 Score=19.09 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=7.9
Q ss_pred HHHHHhhcccc
Q 022430 264 IIGFVIGTISP 274 (297)
Q Consensus 264 i~g~ivG~vP~ 274 (297)
+.|++.|+||-
T Consensus 6 l~GivlGlipi 16 (30)
T d1q90g_ 6 LCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHhhHHH
Confidence 45778888873
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.05 E-value=82 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=12.1
Q ss_pred HHhhhhHHHHHHHhhHHHHHHh
Q 022430 39 VTHSLNNLVFYVFNPALIGSNL 60 (297)
Q Consensus 39 ~~~~ls~lv~~vflP~Lif~~l 60 (297)
+.+.--++.+.+.+||++...+
T Consensus 12 ~~~lWkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 12 GARTWRFLTFGLALPSVALCTL 33 (84)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666655433
No 5
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.83 E-value=2.1e+02 Score=20.26 Aligned_cols=44 Identities=11% Similarity=0.344 Sum_probs=33.8
Q ss_pred hhhccChhHHHHHHHHHh-hcccccccccccCC------CCchhhhhhhhhc
Q 022430 252 LKMIFAPSTIAAIIGFVI-GTISPFRKVIVGES------APLRVLDSSAALV 296 (297)
Q Consensus 252 l~~~~~Pp~iaai~g~iv-G~vP~Lr~~~f~~~------apL~~i~dS~~~l 296 (297)
+.++-+-..++-++-.+. |.|| ++++-|... .=++.+|++.+-+
T Consensus 23 iEel~tGa~yCQl~d~l~Pg~i~-l~kVkf~a~~e~e~~~N~klLq~af~kl 73 (120)
T d2qjza1 23 IEQLCSGAAYCQFMDMLFPGSIA-LKKVKFQAKLEHEYIQNFKILQAGFKRM 73 (120)
T ss_dssp GGGGGGSHHHHHHHHHHSTTSSC-GGGCCTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHCcCcch-HhhhccCCCCHHHHHHHHHHHHHHHHHc
Confidence 688889999999999999 9888 899988865 2234566665544
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.51 E-value=8.3e+02 Score=19.80 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHhhHHHHHHhhccCC-cc--hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 022430 49 YVFNPALIGSNLAETIT-YQ--SLISL-WFMPVNILLSFLIGSALAWILIKITRTPPH 102 (297)
Q Consensus 49 ~vflP~Lif~~l~~~~t-~~--~l~~~-~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~ 102 (297)
+...+.++|.++...+. .+ ++.+. +....+.+++++++..+|+++...+++...
T Consensus 44 ~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~ 101 (405)
T d2nwwa1 44 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 101 (405)
T ss_dssp HHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCC
T ss_pred HHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34566778888876652 33 33333 245555678888999999999998886543
No 7
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.20 E-value=1.9e+02 Score=22.23 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=13.2
Q ss_pred HHHHHHhhHHHHHHhh
Q 022430 46 LVFYVFNPALIGSNLA 61 (297)
Q Consensus 46 lv~~vflP~Lif~~l~ 61 (297)
.++++.+||.+++.+.
T Consensus 4 Y~~~lilP~~li~~ls 19 (260)
T d1oede_ 4 YIINIIAPCVLISSLV 19 (260)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHH
Confidence 5788999999888764
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.73 E-value=2.3e+02 Score=21.58 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.3
Q ss_pred HHHHHHhhHHHHHHhh
Q 022430 46 LVFYVFNPALIGSNLA 61 (297)
Q Consensus 46 lv~~vflP~Lif~~l~ 61 (297)
.++++.+||.+.+.+.
T Consensus 4 y~~~~~~P~~~i~~l~ 19 (250)
T d1oedb_ 4 YIVYTIIPCILISILA 19 (250)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeHHHHHHHHHHHH
Confidence 5789999999888764
No 9
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.71 E-value=1.2e+02 Score=17.35 Aligned_cols=27 Identities=4% Similarity=-0.151 Sum_probs=16.8
Q ss_pred hhccChhHHHHHHHHHhhccccccccc
Q 022430 253 KMIFAPSTIAAIIGFVIGTISPFRKVI 279 (297)
Q Consensus 253 ~~~~~Pp~iaai~g~ivG~vP~Lr~~~ 279 (297)
+++||=-+.|++-+-..|+.=|.-+.|
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fF 36 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFF 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhhccceeEEe
Confidence 455666677877777777654444443
No 10
>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]}
Probab=3.06 E-value=1.6e+02 Score=21.20 Aligned_cols=23 Identities=13% Similarity=0.475 Sum_probs=20.8
Q ss_pred hhccChhHHHHHHHHHhhccccc
Q 022430 253 KMIFAPSTIAAIIGFVIGTISPF 275 (297)
Q Consensus 253 ~~~~~Pp~iaai~g~ivG~vP~L 275 (297)
-++.+|--+-.+.|+..|.|||+
T Consensus 77 l~~a~~~e~~~~tG~~~G~v~P~ 99 (150)
T d1wdva_ 77 VRLARANEVVELTGYPVGGVPPV 99 (150)
T ss_dssp EEECCHHHHHHHHSSCGGGCCSS
T ss_pred cccCCHHHHHHhcCCCcceeecc
Confidence 46789999999999999999997
Done!