Query 022434
Match_columns 297
No_of_seqs 297 out of 2689
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:30:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1250 FadB 3-hydroxyacyl-CoA 100.0 2.8E-72 6E-77 482.0 31.0 283 4-286 2-285 (307)
2 KOG2304 3-hydroxyacyl-CoA dehy 100.0 9.3E-74 2E-78 456.2 19.0 283 3-285 9-298 (298)
3 PRK07819 3-hydroxybutyryl-CoA 100.0 2.2E-69 4.7E-74 470.0 33.6 284 1-284 1-286 (286)
4 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 7.6E-66 1.7E-70 476.7 34.5 287 4-290 4-291 (503)
5 TIGR02440 FadJ fatty oxidation 100.0 9.1E-65 2E-69 487.5 34.9 287 4-293 303-590 (699)
6 PRK08268 3-hydroxy-acyl-CoA de 100.0 2.2E-64 4.7E-69 468.4 35.2 288 2-289 4-292 (507)
7 TIGR02437 FadB fatty oxidation 100.0 1.4E-64 3E-69 486.2 34.1 282 4-286 312-594 (714)
8 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.2E-64 2.7E-69 487.5 33.6 282 4-288 334-617 (737)
9 PRK11730 fadB multifunctional 100.0 1.4E-64 3E-69 487.3 33.5 283 4-287 312-595 (715)
10 PRK08293 3-hydroxybutyryl-CoA 100.0 3.4E-63 7.5E-68 433.1 34.1 282 4-285 2-287 (287)
11 PRK11154 fadJ multifunctional 100.0 9.7E-64 2.1E-68 481.5 33.5 283 4-289 308-591 (708)
12 PLN02545 3-hydroxybutyryl-CoA 100.0 5.3E-63 1.1E-67 434.0 35.0 286 3-288 2-287 (295)
13 PRK09260 3-hydroxybutyryl-CoA 100.0 5.9E-63 1.3E-67 432.1 34.9 284 5-289 1-285 (288)
14 PRK05808 3-hydroxybutyryl-CoA 100.0 4.9E-63 1.1E-67 431.5 33.6 280 5-284 3-282 (282)
15 PRK07530 3-hydroxybutyryl-CoA 100.0 1.5E-62 3.3E-67 430.4 34.6 284 4-287 3-286 (292)
16 PRK06035 3-hydroxyacyl-CoA deh 100.0 1.8E-62 4E-67 429.6 33.5 281 4-284 2-290 (291)
17 PRK08269 3-hydroxybutyryl-CoA 100.0 3.6E-60 7.7E-65 416.1 31.8 271 16-286 1-284 (314)
18 PRK07066 3-hydroxybutyryl-CoA 100.0 4E-59 8.6E-64 407.8 27.3 279 4-286 6-298 (321)
19 PRK06130 3-hydroxybutyryl-CoA 100.0 4.4E-53 9.5E-58 374.0 33.6 280 3-288 2-286 (311)
20 PRK06129 3-hydroxyacyl-CoA deh 100.0 1.3E-45 2.8E-50 325.3 32.3 266 5-270 2-275 (308)
21 PF02737 3HCDH_N: 3-hydroxyacy 100.0 1.6E-41 3.4E-46 275.6 20.1 179 7-185 1-179 (180)
22 PRK07531 bifunctional 3-hydrox 100.0 1.8E-40 3.8E-45 309.1 29.9 244 4-251 3-252 (495)
23 KOG1683 Hydroxyacyl-CoA dehydr 100.0 6.2E-41 1.3E-45 287.0 10.9 265 16-287 1-265 (380)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 7.9E-37 1.7E-41 244.8 17.1 232 5-236 3-240 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 100.0 4.2E-31 9.2E-36 245.9 20.5 168 109-283 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 100.0 1.2E-29 2.5E-34 185.8 9.5 97 188-284 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 6.9E-26 1.5E-30 210.5 17.8 122 151-272 378-499 (503)
28 COG2084 MmsB 3-hydroxyisobutyr 99.9 4.2E-24 9.2E-29 182.4 19.9 189 6-225 1-211 (286)
29 TIGR01505 tartro_sem_red 2-hyd 99.9 3.8E-21 8.2E-26 168.6 19.0 188 7-225 1-209 (291)
30 KOG0409 Predicted dehydrogenas 99.9 2.4E-21 5.2E-26 162.7 16.4 191 5-226 35-247 (327)
31 PRK11559 garR tartronate semia 99.9 2.6E-20 5.6E-25 163.8 21.4 189 6-225 3-212 (296)
32 PRK07417 arogenate dehydrogena 99.8 4.9E-18 1.1E-22 147.9 23.1 155 6-185 1-167 (279)
33 PRK15461 NADH-dependent gamma- 99.8 3.3E-18 7.1E-23 150.1 18.6 187 6-223 2-209 (296)
34 PLN02350 phosphogluconate dehy 99.8 4.4E-18 9.4E-23 156.9 17.8 192 4-220 5-224 (493)
35 PF03446 NAD_binding_2: NAD bi 99.8 1.5E-19 3.3E-24 144.8 6.6 149 5-184 1-162 (163)
36 TIGR01692 HIBADH 3-hydroxyisob 99.8 6.4E-18 1.4E-22 147.9 16.7 185 10-225 1-206 (288)
37 PRK15059 tartronate semialdehy 99.8 8.6E-18 1.9E-22 146.9 17.1 190 7-225 2-209 (292)
38 PLN02688 pyrroline-5-carboxyla 99.8 1.1E-16 2.4E-21 138.6 21.3 151 6-184 1-158 (266)
39 PRK12490 6-phosphogluconate de 99.8 4.4E-17 9.6E-22 143.2 18.6 184 7-222 2-211 (299)
40 PLN02858 fructose-bisphosphate 99.8 3.9E-17 8.5E-22 167.0 18.9 191 4-225 3-217 (1378)
41 PRK09599 6-phosphogluconate de 99.7 1.4E-16 3E-21 140.3 19.2 187 6-223 1-213 (301)
42 TIGR00872 gnd_rel 6-phosphoglu 99.7 9.3E-16 2E-20 134.7 19.8 191 6-224 1-212 (298)
43 TIGR03026 NDP-sugDHase nucleot 99.7 6.1E-16 1.3E-20 141.9 19.3 204 6-223 1-246 (411)
44 PRK11064 wecC UDP-N-acetyl-D-m 99.7 9.6E-16 2.1E-20 140.2 20.2 200 5-221 3-248 (415)
45 PTZ00142 6-phosphogluconate de 99.7 8.2E-16 1.8E-20 141.8 18.6 190 6-221 2-219 (470)
46 PRK08507 prephenate dehydrogen 99.7 9.2E-15 2E-19 127.1 23.5 151 7-185 2-168 (275)
47 PRK15057 UDP-glucose 6-dehydro 99.7 9.5E-16 2.1E-20 138.7 17.8 197 6-221 1-233 (388)
48 PLN02858 fructose-bisphosphate 99.7 6E-16 1.3E-20 158.4 18.3 193 5-225 324-537 (1378)
49 PRK11880 pyrroline-5-carboxyla 99.7 4.5E-15 9.8E-20 128.6 21.3 152 5-183 2-158 (267)
50 PRK06545 prephenate dehydrogen 99.7 4.8E-15 1E-19 133.4 21.9 157 6-184 1-173 (359)
51 PRK12491 pyrroline-5-carboxyla 99.7 1.1E-14 2.3E-19 126.0 22.5 152 6-182 3-160 (272)
52 TIGR02441 fa_ox_alpha_mit fatt 99.7 1.9E-16 4.2E-21 153.7 12.5 105 166-271 624-733 (737)
53 COG0677 WecC UDP-N-acetyl-D-ma 99.7 1.4E-14 3.1E-19 126.6 21.8 201 6-222 10-253 (436)
54 PRK07679 pyrroline-5-carboxyla 99.7 5.3E-15 1.1E-19 128.9 19.4 191 5-222 3-208 (279)
55 PRK11199 tyrA bifunctional cho 99.7 1.9E-15 4.2E-20 136.4 16.7 140 4-185 97-242 (374)
56 PRK15182 Vi polysaccharide bio 99.7 8.2E-15 1.8E-19 134.1 19.4 202 4-222 5-245 (425)
57 PRK07502 cyclohexadienyl dehyd 99.7 5.5E-14 1.2E-18 124.2 24.0 155 5-184 6-178 (307)
58 COG1004 Ugd Predicted UDP-gluc 99.7 1.1E-14 2.5E-19 127.6 18.5 205 6-221 1-242 (414)
59 PRK12557 H(2)-dependent methyl 99.7 3.7E-14 8.1E-19 125.9 21.9 190 6-216 1-232 (342)
60 PRK08655 prephenate dehydrogen 99.6 1.7E-13 3.7E-18 126.1 23.9 155 6-185 1-163 (437)
61 TIGR00873 gnd 6-phosphoglucona 99.6 3.2E-14 6.8E-19 131.3 18.3 187 7-220 1-215 (467)
62 PRK00094 gpsA NAD(P)H-dependen 99.6 2.5E-14 5.4E-19 127.4 16.6 197 6-220 2-239 (325)
63 PRK11154 fadJ multifunctional 99.6 5.7E-15 1.2E-19 143.5 11.3 86 186-272 614-703 (708)
64 TIGR02440 FadJ fatty oxidation 99.6 8.9E-15 1.9E-19 141.8 11.4 86 186-272 607-696 (699)
65 COG0287 TyrA Prephenate dehydr 99.6 1.8E-13 3.9E-18 117.9 18.2 157 5-185 3-171 (279)
66 PLN02353 probable UDP-glucose 99.6 3.4E-13 7.4E-18 124.6 20.1 205 6-221 2-252 (473)
67 PRK08229 2-dehydropantoate 2-r 99.6 1.9E-12 4.1E-17 116.2 23.3 166 6-188 3-180 (341)
68 PRK14618 NAD(P)H-dependent gly 99.6 1.1E-13 2.5E-18 123.3 15.3 196 5-221 4-239 (328)
69 PLN02256 arogenate dehydrogena 99.5 3.9E-13 8.5E-18 117.8 17.3 154 4-184 35-203 (304)
70 PRK06928 pyrroline-5-carboxyla 99.5 2.4E-12 5.3E-17 111.9 20.6 152 6-182 2-160 (277)
71 PRK07680 late competence prote 99.5 2.7E-12 5.8E-17 111.5 20.4 150 7-182 2-157 (273)
72 PRK05479 ketol-acid reductoiso 99.5 1.2E-12 2.6E-17 115.0 18.0 184 5-215 17-223 (330)
73 COG0345 ProC Pyrroline-5-carbo 99.5 5.8E-12 1.3E-16 107.1 21.6 151 6-183 2-158 (266)
74 PRK06476 pyrroline-5-carboxyla 99.5 2E-12 4.4E-17 111.4 18.9 181 7-221 2-194 (258)
75 PRK07634 pyrroline-5-carboxyla 99.5 5.2E-12 1.1E-16 108.0 20.2 155 1-182 1-162 (245)
76 PRK14806 bifunctional cyclohex 99.5 1.1E-11 2.4E-16 122.0 25.0 157 5-185 3-177 (735)
77 PRK09287 6-phosphogluconate de 99.5 7.9E-13 1.7E-17 121.6 15.1 177 16-220 1-207 (459)
78 TIGR01724 hmd_rel H2-forming N 99.5 1.6E-11 3.4E-16 105.7 21.0 157 6-183 1-192 (341)
79 cd05297 GH4_alpha_glucosidase_ 99.5 1.9E-14 4.1E-19 132.0 2.0 158 6-179 1-184 (423)
80 PRK11730 fadB multifunctional 99.5 4E-13 8.6E-18 130.7 11.1 86 188-282 625-714 (715)
81 PRK14619 NAD(P)H-dependent gly 99.4 1.9E-12 4.2E-17 114.4 14.3 169 4-216 3-211 (308)
82 TIGR02437 FadB fatty oxidation 99.4 5E-13 1.1E-17 129.7 11.0 84 187-272 624-711 (714)
83 PTZ00431 pyrroline carboxylate 99.4 3.9E-11 8.4E-16 103.4 20.2 144 6-182 4-153 (260)
84 PRK08818 prephenate dehydrogen 99.4 5.9E-12 1.3E-16 112.6 15.5 138 5-184 4-154 (370)
85 PLN02712 arogenate dehydrogena 99.4 8.6E-12 1.9E-16 120.0 16.9 154 4-184 368-536 (667)
86 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 1.6E-12 3.4E-17 103.4 9.5 104 7-123 1-106 (157)
87 TIGR01915 npdG NADPH-dependent 99.4 1.1E-11 2.5E-16 104.0 14.9 163 6-185 1-189 (219)
88 PF10727 Rossmann-like: Rossma 99.4 1.8E-12 3.8E-17 98.4 8.6 114 5-143 10-127 (127)
89 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 2.4E-12 5.2E-17 104.9 9.6 107 6-125 1-124 (185)
90 COG0240 GpsA Glycerol-3-phosph 99.4 1.3E-11 2.8E-16 107.1 13.7 165 6-188 2-181 (329)
91 PLN02712 arogenate dehydrogena 99.4 1.5E-10 3.2E-15 111.6 22.3 153 5-184 52-219 (667)
92 PTZ00082 L-lactate dehydrogena 99.4 5.5E-12 1.2E-16 111.5 10.9 127 4-142 5-153 (321)
93 TIGR00465 ilvC ketol-acid redu 99.3 2.4E-10 5.2E-15 100.6 20.4 148 5-179 3-161 (314)
94 PRK06249 2-dehydropantoate 2-r 99.3 1.9E-09 4.2E-14 95.5 25.5 179 1-195 1-196 (313)
95 PRK12439 NAD(P)H-dependent gly 99.3 3E-10 6.4E-15 101.7 18.7 166 4-188 6-187 (341)
96 cd01339 LDH-like_MDH L-lactate 99.3 1E-11 2.2E-16 109.3 8.9 122 8-141 1-139 (300)
97 COG1023 Gnd Predicted 6-phosph 99.3 4.1E-10 8.8E-15 92.3 16.2 187 6-224 1-213 (300)
98 PF02153 PDH: Prephenate dehyd 99.3 3E-10 6.6E-15 97.7 16.2 141 20-184 1-157 (258)
99 PRK12921 2-dehydropantoate 2-r 99.3 3.9E-10 8.4E-15 99.6 17.3 168 6-188 1-180 (305)
100 PRK14620 NAD(P)H-dependent gly 99.3 3.3E-10 7.1E-15 101.0 16.7 168 6-190 1-184 (326)
101 PTZ00117 malate dehydrogenase; 99.2 3.2E-11 7E-16 106.7 9.7 126 5-142 5-147 (319)
102 COG2085 Predicted dinucleotide 99.2 1.2E-10 2.6E-15 94.6 12.0 154 5-185 1-180 (211)
103 PRK06223 malate dehydrogenase; 99.2 4.5E-11 9.8E-16 105.6 10.4 112 5-128 2-129 (307)
104 PRK06522 2-dehydropantoate 2-r 99.2 7.3E-10 1.6E-14 97.7 17.4 167 6-188 1-177 (304)
105 PF03807 F420_oxidored: NADP o 99.2 6.1E-11 1.3E-15 86.2 8.6 89 7-121 1-95 (96)
106 COG4007 Predicted dehydrogenas 99.2 5.5E-09 1.2E-13 86.5 19.2 158 6-184 2-194 (340)
107 TIGR03376 glycerol3P_DH glycer 99.2 1.5E-09 3.3E-14 96.5 15.8 161 7-188 1-197 (342)
108 COG1893 ApbA Ketopantoate redu 99.2 3.3E-08 7.2E-13 87.0 23.9 235 6-254 1-283 (307)
109 PTZ00345 glycerol-3-phosphate 99.1 2.7E-09 5.9E-14 95.6 16.0 168 5-188 11-206 (365)
110 COG0362 Gnd 6-phosphogluconate 99.1 6.1E-09 1.3E-13 91.3 16.8 195 5-221 3-220 (473)
111 TIGR01763 MalateDH_bact malate 99.1 4.8E-10 1E-14 98.6 10.1 99 6-117 2-115 (305)
112 KOG1683 Hydroxyacyl-CoA dehydr 99.0 1.9E-10 4E-15 100.0 4.0 78 188-271 294-375 (380)
113 PRK12480 D-lactate dehydrogena 99.0 8.5E-09 1.8E-13 91.7 13.7 112 6-145 147-262 (330)
114 PRK05708 2-dehydropantoate 2-r 99.0 2.3E-08 5.1E-13 88.2 15.5 177 6-196 3-187 (305)
115 cd00650 LDH_MDH_like NAD-depen 99.0 3.6E-09 7.7E-14 91.4 9.6 96 8-117 1-116 (263)
116 PRK13403 ketol-acid reductoiso 98.9 7.9E-08 1.7E-12 83.7 16.6 144 5-179 16-173 (335)
117 PRK06444 prephenate dehydrogen 98.9 8.6E-08 1.9E-12 78.6 14.3 115 6-184 1-120 (197)
118 PF07991 IlvN: Acetohydroxy ac 98.9 2.6E-08 5.7E-13 77.7 10.3 88 5-118 4-93 (165)
119 PF00056 Ldh_1_N: lactate/mala 98.9 3.5E-08 7.5E-13 76.9 10.8 104 6-123 1-121 (141)
120 TIGR00112 proC pyrroline-5-car 98.8 7E-07 1.5E-11 76.3 19.1 129 29-182 10-140 (245)
121 PRK07574 formate dehydrogenase 98.8 1.2E-07 2.7E-12 85.5 14.9 115 6-145 193-312 (385)
122 PLN03139 formate dehydrogenase 98.8 1.3E-07 2.8E-12 85.4 15.0 116 5-145 199-319 (386)
123 PRK13243 glyoxylate reductase; 98.8 8.7E-08 1.9E-12 85.4 13.7 114 5-145 150-268 (333)
124 PRK06436 glycerate dehydrogena 98.8 4.5E-08 9.8E-13 85.8 10.9 111 5-145 122-237 (303)
125 PF02558 ApbA: Ketopantoate re 98.8 4.4E-08 9.5E-13 77.3 9.0 114 8-135 1-117 (151)
126 cd05291 HicDH_like L-2-hydroxy 98.8 4.3E-08 9.3E-13 86.6 9.7 98 6-117 1-114 (306)
127 PRK15469 ghrA bifunctional gly 98.7 1.6E-07 3.5E-12 82.8 11.4 114 5-145 136-254 (312)
128 PRK00066 ldh L-lactate dehydro 98.7 1.6E-07 3.4E-12 83.1 10.3 77 2-92 3-81 (315)
129 cd05292 LDH_2 A subgroup of L- 98.6 1.4E-07 3E-12 83.3 9.0 97 6-116 1-113 (308)
130 PRK08605 D-lactate dehydrogena 98.6 3.2E-07 6.9E-12 81.8 11.2 101 5-133 146-251 (332)
131 TIGR02354 thiF_fam2 thiamine b 98.6 4.1E-08 8.9E-13 81.0 4.7 105 5-117 21-142 (200)
132 PRK15076 alpha-galactosidase; 98.6 5.2E-07 1.1E-11 83.0 12.0 77 6-94 2-85 (431)
133 KOG2380 Prephenate dehydrogena 98.6 2.4E-06 5.3E-11 73.8 14.8 152 5-183 52-218 (480)
134 TIGR01327 PGDH D-3-phosphoglyc 98.6 9.4E-07 2E-11 83.6 13.5 114 6-145 139-257 (525)
135 cd01065 NAD_bind_Shikimate_DH 98.6 1.3E-07 2.8E-12 74.9 6.6 74 5-97 19-94 (155)
136 cd05293 LDH_1 A subgroup of L- 98.6 6.2E-07 1.3E-11 79.1 11.2 98 5-115 3-116 (312)
137 KOG2653 6-phosphogluconate deh 98.6 1.5E-06 3.3E-11 75.4 13.1 196 4-221 5-224 (487)
138 PF02826 2-Hacid_dh_C: D-isome 98.6 2.2E-07 4.7E-12 75.5 7.6 115 5-145 36-155 (178)
139 cd00300 LDH_like L-lactate deh 98.5 3.1E-07 6.8E-12 80.8 8.4 96 8-117 1-112 (300)
140 PLN02602 lactate dehydrogenase 98.5 5.8E-07 1.3E-11 80.3 10.1 96 6-114 38-149 (350)
141 PRK13581 D-3-phosphoglycerate 98.5 1.6E-06 3.5E-11 82.0 13.6 114 5-145 140-258 (526)
142 COG0111 SerA Phosphoglycerate 98.5 9.2E-07 2E-11 78.2 9.8 114 5-145 142-261 (324)
143 PLN02928 oxidoreductase family 98.4 3.6E-06 7.9E-11 75.4 12.7 126 6-145 160-290 (347)
144 cd05294 LDH-like_MDH_nadp A la 98.4 1.2E-06 2.5E-11 77.4 9.0 107 6-125 1-126 (309)
145 PF00670 AdoHcyase_NAD: S-aden 98.4 1.6E-06 3.4E-11 68.3 8.5 88 5-121 23-111 (162)
146 TIGR02853 spore_dpaA dipicolin 98.4 1.5E-06 3.1E-11 75.9 9.2 92 5-123 151-243 (287)
147 PRK08410 2-hydroxyacid dehydro 98.4 3.5E-06 7.5E-11 74.5 11.5 110 5-145 145-259 (311)
148 PRK00257 erythronate-4-phospha 98.4 1.3E-06 2.9E-11 78.8 7.8 110 5-144 116-234 (381)
149 cd05290 LDH_3 A subgroup of L- 98.3 2E-06 4.3E-11 75.7 8.6 74 7-92 1-76 (307)
150 PRK05442 malate dehydrogenase; 98.3 2.7E-06 5.9E-11 75.4 9.5 108 4-125 3-135 (326)
151 PRK11790 D-3-phosphoglycerate 98.3 6.4E-06 1.4E-10 75.5 11.8 111 5-144 151-266 (409)
152 TIGR00745 apbA_panE 2-dehydrop 98.3 2E-05 4.4E-10 69.0 14.7 165 15-193 1-175 (293)
153 PRK14194 bifunctional 5,10-met 98.3 1.7E-06 3.7E-11 75.1 7.0 70 5-118 159-229 (301)
154 COG0039 Mdh Malate/lactate deh 98.3 3.1E-06 6.6E-11 73.8 8.3 104 6-124 1-122 (313)
155 PRK15409 bifunctional glyoxyla 98.2 1.2E-05 2.7E-10 71.3 11.4 113 6-145 146-264 (323)
156 PRK08306 dipicolinate synthase 98.2 1.2E-05 2.7E-10 70.5 11.1 91 5-122 152-243 (296)
157 PRK06932 glycerate dehydrogena 98.2 1.3E-05 2.9E-10 70.8 11.4 109 6-145 148-261 (314)
158 PRK06141 ornithine cyclodeamin 98.2 5.2E-06 1.1E-10 73.5 8.8 94 4-121 124-220 (314)
159 PRK13302 putative L-aspartate 98.2 9.5E-06 2E-10 70.3 10.0 71 5-97 6-80 (271)
160 TIGR01759 MalateDH-SF1 malate 98.2 7.3E-06 1.6E-10 72.6 9.5 106 5-124 3-133 (323)
161 PRK15438 erythronate-4-phospha 98.2 3.6E-06 7.7E-11 75.9 7.5 111 5-145 116-235 (378)
162 PF01488 Shikimate_DH: Shikima 98.2 4.3E-06 9.3E-11 64.6 6.8 74 5-96 12-87 (135)
163 PLN00112 malate dehydrogenase 98.2 1.6E-05 3.5E-10 72.9 11.6 105 5-123 100-229 (444)
164 cd01338 MDH_choloroplast_like 98.2 4.5E-06 9.8E-11 74.0 7.3 105 5-123 2-131 (322)
165 KOG3124 Pyrroline-5-carboxylat 98.2 2.5E-05 5.4E-10 65.3 10.9 151 6-180 1-156 (267)
166 cd00401 AdoHcyase S-adenosyl-L 98.2 2E-05 4.3E-10 71.9 11.2 85 5-117 202-286 (413)
167 PRK06487 glycerate dehydrogena 98.2 2.2E-05 4.8E-10 69.6 11.2 108 6-145 149-261 (317)
168 cd01075 NAD_bind_Leu_Phe_Val_D 98.2 1.1E-05 2.4E-10 66.6 8.6 39 6-44 29-67 (200)
169 PRK13304 L-aspartate dehydroge 98.1 1.7E-05 3.8E-10 68.5 9.8 68 6-96 2-73 (265)
170 COG1052 LdhA Lactate dehydroge 98.1 9.5E-06 2.1E-10 71.8 8.0 102 5-133 146-251 (324)
171 PRK05225 ketol-acid reductoiso 98.1 1.4E-05 3.1E-10 72.6 9.1 147 5-179 36-200 (487)
172 KOG2666 UDP-glucose/GDP-mannos 98.1 0.00013 2.8E-09 62.8 14.4 204 5-220 1-251 (481)
173 PF01113 DapB_N: Dihydrodipico 98.1 1.4E-05 3E-10 60.8 7.6 101 6-127 1-105 (124)
174 COG0059 IlvC Ketol-acid reduct 98.1 0.00016 3.5E-09 62.0 14.4 146 5-179 18-176 (338)
175 COG0569 TrkA K+ transport syst 98.1 5.3E-05 1.2E-09 63.8 11.7 92 6-119 1-100 (225)
176 TIGR01757 Malate-DH_plant mala 98.1 3.9E-05 8.4E-10 69.3 11.4 104 5-122 44-172 (387)
177 PTZ00075 Adenosylhomocysteinas 98.1 1.7E-05 3.7E-10 72.9 9.3 89 5-124 254-344 (476)
178 cd01337 MDH_glyoxysomal_mitoch 98.1 2.2E-05 4.7E-10 69.1 9.4 93 6-117 1-114 (310)
179 TIGR00936 ahcY adenosylhomocys 98.1 2.5E-05 5.5E-10 71.0 9.7 99 5-131 195-296 (406)
180 PLN02306 hydroxypyruvate reduc 98.0 4.9E-05 1.1E-09 69.0 11.1 128 6-145 166-300 (386)
181 cd05213 NAD_bind_Glutamyl_tRNA 98.0 2.4E-05 5.1E-10 69.3 9.0 72 5-97 178-251 (311)
182 TIGR01772 MDH_euk_gproteo mala 98.0 2.1E-05 4.6E-10 69.3 8.4 96 7-121 1-117 (312)
183 cd01487 E1_ThiF_like E1_ThiF_l 98.0 4E-05 8.6E-10 61.9 9.4 32 7-38 1-33 (174)
184 PRK05476 S-adenosyl-L-homocyst 98.0 2.9E-05 6.3E-10 71.0 9.4 84 5-118 212-297 (425)
185 TIGR01771 L-LDH-NAD L-lactate 98.0 1.3E-05 2.9E-10 70.3 7.0 93 10-117 1-110 (299)
186 KOG2711 Glycerol-3-phosphate d 98.0 0.00012 2.5E-09 63.8 12.3 174 5-188 21-219 (372)
187 PRK14188 bifunctional 5,10-met 98.0 2.1E-05 4.5E-10 68.5 7.8 70 5-119 158-229 (296)
188 TIGR02371 ala_DH_arch alanine 98.0 3.5E-05 7.5E-10 68.6 9.0 94 4-121 127-223 (325)
189 PRK04148 hypothetical protein; 98.0 8E-05 1.7E-09 56.9 9.3 96 5-121 17-112 (134)
190 PLN00106 malate dehydrogenase 98.0 5.1E-05 1.1E-09 67.2 9.6 34 5-38 18-54 (323)
191 COG1064 AdhP Zn-dependent alco 98.0 0.00052 1.1E-08 60.7 15.5 159 5-211 167-329 (339)
192 KOG1495 Lactate dehydrogenase 97.9 0.00012 2.6E-09 61.6 10.5 75 5-92 20-96 (332)
193 cd00704 MDH Malate dehydrogena 97.9 2E-05 4.3E-10 69.9 6.2 103 7-123 2-129 (323)
194 TIGR01758 MDH_euk_cyt malate d 97.9 5.9E-05 1.3E-09 67.0 8.7 103 7-124 1-129 (324)
195 PRK12549 shikimate 5-dehydroge 97.9 6.2E-05 1.3E-09 65.7 8.6 42 6-47 128-170 (284)
196 TIGR00507 aroE shikimate 5-deh 97.9 7E-05 1.5E-09 65.0 8.6 42 5-46 117-158 (270)
197 KOG0069 Glyoxylate/hydroxypyru 97.9 7E-05 1.5E-09 65.9 8.4 115 5-145 162-281 (336)
198 PRK08644 thiamine biosynthesis 97.9 0.00012 2.5E-09 61.1 9.4 33 5-37 28-61 (212)
199 PF02056 Glyco_hydro_4: Family 97.8 0.00029 6.2E-09 56.9 11.1 74 7-92 1-81 (183)
200 PRK14179 bifunctional 5,10-met 97.8 4.3E-05 9.2E-10 66.0 6.4 69 5-118 158-228 (284)
201 PRK06718 precorrin-2 dehydroge 97.8 0.00067 1.4E-08 56.1 12.8 127 5-175 10-142 (202)
202 PLN02494 adenosylhomocysteinas 97.8 9.8E-05 2.1E-09 67.9 8.4 86 5-119 254-340 (477)
203 TIGR02992 ectoine_eutC ectoine 97.8 0.00013 2.8E-09 65.1 8.8 75 5-96 129-206 (326)
204 COG2910 Putative NADH-flavin r 97.8 4.8E-05 1E-09 60.5 5.3 38 6-43 1-39 (211)
205 PF01408 GFO_IDH_MocA: Oxidore 97.8 0.0006 1.3E-08 51.2 11.2 93 7-126 2-100 (120)
206 COG4091 Predicted homoserine d 97.8 0.00055 1.2E-08 59.8 11.9 158 5-184 17-184 (438)
207 PTZ00325 malate dehydrogenase; 97.7 0.00021 4.6E-09 63.3 9.7 34 4-37 7-43 (321)
208 COG1748 LYS9 Saccharopine dehy 97.7 5.7E-05 1.2E-09 68.0 6.1 75 5-97 1-81 (389)
209 PRK08618 ornithine cyclodeamin 97.7 0.00017 3.6E-09 64.3 9.0 92 5-120 127-221 (325)
210 TIGR01035 hemA glutamyl-tRNA r 97.7 5.6E-05 1.2E-09 69.6 6.0 71 5-96 180-252 (417)
211 cd05298 GH4_GlvA_pagL_like Gly 97.7 0.0008 1.7E-08 62.1 13.2 75 6-92 1-82 (437)
212 PRK05086 malate dehydrogenase; 97.7 0.00029 6.4E-09 62.3 9.9 34 6-39 1-38 (312)
213 PRK00258 aroE shikimate 5-dehy 97.7 0.00019 4.1E-09 62.5 8.6 73 5-96 123-197 (278)
214 cd05197 GH4_glycoside_hydrolas 97.7 0.001 2.2E-08 61.3 13.8 75 6-92 1-82 (425)
215 cd05296 GH4_P_beta_glucosidase 97.7 0.00044 9.5E-09 63.6 11.1 75 6-92 1-83 (419)
216 PRK07340 ornithine cyclodeamin 97.7 0.00022 4.8E-09 62.9 8.7 89 5-119 125-216 (304)
217 PRK00045 hemA glutamyl-tRNA re 97.7 9.1E-05 2E-09 68.4 6.5 71 5-96 182-254 (423)
218 cd01336 MDH_cytoplasmic_cytoso 97.7 0.00027 5.9E-09 62.8 9.1 101 6-121 3-129 (325)
219 COG1712 Predicted dinucleotide 97.7 0.00012 2.6E-09 60.2 6.1 92 6-124 1-96 (255)
220 smart00859 Semialdhyde_dh Semi 97.6 0.0004 8.7E-09 52.5 8.6 98 7-124 1-103 (122)
221 PRK08291 ectoine utilization p 97.6 0.0002 4.4E-09 63.9 7.8 75 5-96 132-209 (330)
222 cd01080 NAD_bind_m-THF_DH_Cycl 97.6 0.00011 2.4E-09 58.8 5.5 35 5-39 44-79 (168)
223 PF02254 TrkA_N: TrkA-N domain 97.6 0.0017 3.7E-08 48.4 11.7 89 8-120 1-97 (116)
224 PRK06407 ornithine cyclodeamin 97.6 0.00036 7.7E-09 61.4 9.0 76 4-96 116-194 (301)
225 PLN00203 glutamyl-tRNA reducta 97.6 0.0001 2.2E-09 69.4 5.9 85 5-107 266-353 (519)
226 TIGR01723 hmd_TIGR 5,10-methen 97.6 0.0022 4.7E-08 54.4 12.7 108 73-183 127-239 (340)
227 TIGR01809 Shik-DH-AROM shikima 97.6 0.00036 7.7E-09 60.9 8.5 42 5-46 125-167 (282)
228 TIGR01470 cysG_Nterm siroheme 97.6 0.0013 2.9E-08 54.5 11.4 129 5-175 9-142 (205)
229 PRK09310 aroDE bifunctional 3- 97.6 0.00023 5E-09 66.7 7.5 71 5-96 332-402 (477)
230 PRK06823 ornithine cyclodeamin 97.6 0.00064 1.4E-08 60.2 9.9 92 4-119 127-221 (315)
231 PRK00961 H(2)-dependent methyl 97.5 0.0028 6.2E-08 53.7 13.0 108 73-183 129-241 (342)
232 PRK10669 putative cation:proto 97.5 0.00047 1E-08 66.1 9.6 95 6-118 418-514 (558)
233 PRK06046 alanine dehydrogenase 97.5 0.00041 9E-09 61.8 8.6 93 4-120 128-223 (326)
234 cd01078 NAD_bind_H4MPT_DH NADP 97.5 0.00014 2.9E-09 59.9 5.1 43 5-47 28-71 (194)
235 COG2423 Predicted ornithine cy 97.5 0.00067 1.5E-08 60.0 9.6 95 4-121 129-226 (330)
236 PRK03659 glutathione-regulated 97.5 0.0012 2.6E-08 63.8 12.2 130 6-180 401-538 (601)
237 PRK00048 dihydrodipicolinate r 97.5 0.00038 8.2E-09 59.9 7.6 67 6-96 2-72 (257)
238 COG0373 HemA Glutamyl-tRNA red 97.5 0.00022 4.8E-09 64.6 6.4 41 5-45 178-219 (414)
239 TIGR02356 adenyl_thiF thiazole 97.5 0.00051 1.1E-08 56.9 7.7 32 6-37 22-54 (202)
240 PF13460 NAD_binding_10: NADH( 97.5 0.00035 7.5E-09 56.6 6.6 35 8-42 1-36 (183)
241 PF02423 OCD_Mu_crystall: Orni 97.5 0.00062 1.3E-08 60.3 8.5 94 4-121 127-225 (313)
242 PRK12475 thiamine/molybdopteri 97.4 0.00095 2E-08 59.7 9.6 33 6-38 25-58 (338)
243 PRK09496 trkA potassium transp 97.4 0.0021 4.6E-08 59.9 12.3 39 6-44 1-39 (453)
244 PRK13940 glutamyl-tRNA reducta 97.4 0.00029 6.2E-09 64.7 6.2 72 5-96 181-254 (414)
245 PRK11861 bifunctional prephena 97.4 0.0062 1.3E-07 59.8 15.8 95 88-184 1-110 (673)
246 COG0169 AroE Shikimate 5-dehyd 97.4 0.00069 1.5E-08 58.7 7.9 43 6-48 127-170 (283)
247 PRK02318 mannitol-1-phosphate 97.4 0.00073 1.6E-08 61.6 8.4 39 6-44 1-40 (381)
248 TIGR00518 alaDH alanine dehydr 97.4 0.00052 1.1E-08 62.2 6.9 40 5-44 167-206 (370)
249 PRK13301 putative L-aspartate 97.4 0.0012 2.5E-08 56.4 8.5 64 6-94 3-72 (267)
250 PRK06719 precorrin-2 dehydroge 97.3 0.0042 9.2E-08 49.2 11.2 33 5-37 13-45 (157)
251 PF01118 Semialdhyde_dh: Semia 97.3 0.001 2.2E-08 50.3 6.8 96 7-123 1-100 (121)
252 PRK07589 ornithine cyclodeamin 97.3 0.002 4.4E-08 57.6 9.5 72 5-94 129-203 (346)
253 TIGR00036 dapB dihydrodipicoli 97.3 0.0023 5E-08 55.3 9.6 74 6-96 2-80 (266)
254 PRK03562 glutathione-regulated 97.3 0.0037 8.1E-08 60.6 12.0 91 5-119 400-498 (621)
255 PF00070 Pyr_redox: Pyridine n 97.2 0.00087 1.9E-08 46.6 5.6 35 7-41 1-35 (80)
256 PRK13303 L-aspartate dehydroge 97.2 0.002 4.3E-08 55.7 8.5 69 6-96 2-73 (265)
257 PRK09496 trkA potassium transp 97.2 0.0034 7.5E-08 58.5 10.7 40 5-44 231-270 (453)
258 PRK09424 pntA NAD(P) transhydr 97.2 0.003 6.5E-08 59.3 10.1 40 5-44 165-204 (509)
259 PRK06199 ornithine cyclodeamin 97.2 0.0012 2.5E-08 60.0 7.2 76 4-94 154-233 (379)
260 PRK07688 thiamine/molybdopteri 97.2 0.0022 4.7E-08 57.4 8.7 33 6-38 25-58 (339)
261 PRK04207 glyceraldehyde-3-phos 97.1 0.0044 9.5E-08 55.6 10.2 86 6-97 2-91 (341)
262 PF03059 NAS: Nicotianamine sy 97.1 0.0011 2.5E-08 57.0 6.1 97 6-117 122-227 (276)
263 PRK14106 murD UDP-N-acetylmura 97.1 0.01 2.2E-07 55.3 13.0 38 1-38 1-38 (450)
264 PRK14175 bifunctional 5,10-met 97.1 0.0026 5.5E-08 55.2 8.2 70 5-118 158-228 (286)
265 PRK08300 acetaldehyde dehydrog 97.1 0.0051 1.1E-07 53.7 10.0 95 1-122 1-103 (302)
266 PRK14027 quinate/shikimate deh 97.1 0.00081 1.8E-08 58.6 4.9 42 6-47 128-170 (283)
267 cd05191 NAD_bind_amino_acid_DH 97.0 0.0047 1E-07 43.6 7.7 32 5-36 23-55 (86)
268 cd05311 NAD_bind_2_malic_enz N 97.0 0.0017 3.6E-08 54.7 6.2 32 6-37 26-60 (226)
269 cd01483 E1_enzyme_family Super 97.0 0.0031 6.7E-08 49.1 7.3 31 7-37 1-32 (143)
270 PRK05562 precorrin-2 dehydroge 97.0 0.015 3.2E-07 48.7 11.5 128 5-175 25-158 (223)
271 PF13380 CoA_binding_2: CoA bi 97.0 0.0037 8E-08 46.8 7.2 80 6-117 1-85 (116)
272 COG0499 SAM1 S-adenosylhomocys 97.0 0.0028 6E-08 55.8 7.1 91 5-124 209-299 (420)
273 KOG1502 Flavonol reductase/cin 97.0 0.0054 1.2E-07 53.9 9.0 41 1-41 1-43 (327)
274 TIGR01921 DAP-DH diaminopimela 97.0 0.003 6.5E-08 55.7 7.4 67 5-97 3-73 (324)
275 PLN02819 lysine-ketoglutarate 96.9 0.0066 1.4E-07 61.6 10.5 75 4-97 568-661 (1042)
276 PF03435 Saccharop_dh: Sacchar 96.9 0.00066 1.4E-08 62.0 3.2 37 8-44 1-39 (386)
277 KOG0022 Alcohol dehydrogenase, 96.9 0.082 1.8E-06 46.1 15.3 41 4-44 192-233 (375)
278 KOG0023 Alcohol dehydrogenase, 96.9 0.054 1.2E-06 47.3 14.3 157 4-211 181-346 (360)
279 COG1063 Tdh Threonine dehydrog 96.9 0.019 4.2E-07 51.7 12.2 38 7-44 171-209 (350)
280 PRK14192 bifunctional 5,10-met 96.9 0.0046 9.9E-08 53.8 7.7 34 5-38 159-193 (283)
281 COG5495 Uncharacterized conser 96.9 0.034 7.3E-07 46.2 12.1 179 5-212 10-204 (289)
282 cd01484 E1-2_like Ubiquitin ac 96.8 0.026 5.7E-07 47.7 12.0 32 7-38 1-33 (234)
283 PRK12409 D-amino acid dehydrog 96.8 0.0015 3.1E-08 60.2 4.8 33 6-38 2-34 (410)
284 TIGR00561 pntA NAD(P) transhyd 96.8 0.011 2.4E-07 55.5 10.4 39 6-44 165-203 (511)
285 PRK12550 shikimate 5-dehydroge 96.8 0.0057 1.2E-07 53.0 8.0 39 6-44 123-162 (272)
286 PRK12749 quinate/shikimate deh 96.8 0.0057 1.2E-07 53.5 8.0 34 6-39 125-159 (288)
287 PRK12548 shikimate 5-dehydroge 96.8 0.0026 5.6E-08 55.8 5.7 35 5-39 126-161 (289)
288 COG1062 AdhC Zn-dependent alco 96.8 0.092 2E-06 46.3 14.9 165 5-211 186-359 (366)
289 PRK07494 2-octaprenyl-6-methox 96.8 0.0015 3.3E-08 59.5 4.4 39 1-39 3-41 (388)
290 PRK05597 molybdopterin biosynt 96.8 0.0023 5.1E-08 57.7 5.4 33 6-38 29-62 (355)
291 PRK08163 salicylate hydroxylas 96.8 0.0019 4.2E-08 59.0 4.9 38 1-39 1-38 (396)
292 PLN00016 RNA-binding protein; 96.7 0.0082 1.8E-07 54.7 8.8 36 5-40 52-92 (378)
293 PRK06153 hypothetical protein; 96.7 0.0059 1.3E-07 54.9 7.4 32 6-37 177-209 (393)
294 COG0673 MviM Predicted dehydro 96.7 0.018 4E-07 51.4 10.8 96 5-126 3-105 (342)
295 CHL00194 ycf39 Ycf39; Provisio 96.7 0.0027 5.8E-08 56.4 5.2 36 6-41 1-37 (317)
296 COG1648 CysG Siroheme synthase 96.7 0.037 8E-07 46.0 11.5 132 5-175 12-145 (210)
297 COG0300 DltE Short-chain dehyd 96.7 0.0073 1.6E-07 51.8 7.5 47 4-50 5-52 (265)
298 TIGR02355 moeB molybdopterin s 96.7 0.0088 1.9E-07 50.9 7.9 35 6-40 25-60 (240)
299 PRK07045 putative monooxygenas 96.7 0.0025 5.4E-08 58.2 4.8 40 1-40 1-40 (388)
300 cd01489 Uba2_SUMO Ubiquitin ac 96.6 0.066 1.4E-06 47.3 13.4 32 7-38 1-33 (312)
301 PRK05600 thiamine biosynthesis 96.6 0.0036 7.8E-08 56.7 5.6 32 6-37 42-74 (370)
302 TIGR03736 PRTRC_ThiF PRTRC sys 96.6 0.0034 7.4E-08 53.3 4.9 35 4-38 10-55 (244)
303 PRK06847 hypothetical protein; 96.6 0.0029 6.2E-08 57.4 4.9 38 1-39 1-38 (375)
304 PRK08762 molybdopterin biosynt 96.6 0.0035 7.5E-08 57.1 5.3 32 6-37 136-168 (376)
305 cd00757 ThiF_MoeB_HesA_family 96.6 0.0041 8.9E-08 52.5 5.3 33 6-38 22-55 (228)
306 TIGR03215 ac_ald_DH_ac acetald 96.6 0.015 3.2E-07 50.6 8.8 71 6-97 2-77 (285)
307 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.013 2.8E-07 49.1 8.2 34 5-38 23-57 (217)
308 PRK02472 murD UDP-N-acetylmura 96.6 0.033 7.1E-07 51.9 11.8 39 1-39 1-39 (447)
309 PRK14874 aspartate-semialdehyd 96.6 0.0092 2E-07 53.4 7.7 143 6-183 2-152 (334)
310 PLN02968 Probable N-acetyl-gam 96.6 0.006 1.3E-07 55.4 6.6 98 5-124 38-138 (381)
311 PF13450 NAD_binding_8: NAD(P) 96.6 0.0034 7.5E-08 42.1 3.8 30 10-39 1-30 (68)
312 PRK05653 fabG 3-ketoacyl-(acyl 96.5 0.0087 1.9E-07 50.4 7.2 44 1-44 1-45 (246)
313 PLN03209 translocon at the inn 96.5 0.014 3.1E-07 55.4 9.1 41 6-46 81-122 (576)
314 PRK08223 hypothetical protein; 96.5 0.0036 7.8E-08 54.3 4.7 33 6-38 28-61 (287)
315 PRK14189 bifunctional 5,10-met 96.5 0.0081 1.8E-07 52.1 6.9 69 5-118 158-228 (285)
316 PRK11579 putative oxidoreducta 96.5 0.038 8.3E-07 49.7 11.6 71 1-97 1-77 (346)
317 PRK00711 D-amino acid dehydrog 96.5 0.0035 7.6E-08 57.7 4.9 33 6-38 1-33 (416)
318 smart00846 Gp_dh_N Glyceraldeh 96.5 0.025 5.5E-07 44.3 9.0 38 6-43 1-41 (149)
319 PRK00683 murD UDP-N-acetylmura 96.5 0.0045 9.7E-08 57.2 5.4 37 5-41 3-39 (418)
320 PRK05868 hypothetical protein; 96.5 0.0035 7.5E-08 57.0 4.5 35 5-39 1-35 (372)
321 PRK05690 molybdopterin biosynt 96.5 0.013 2.9E-07 49.9 7.8 33 6-38 33-66 (245)
322 PRK03369 murD UDP-N-acetylmura 96.5 0.0086 1.9E-07 56.5 7.1 35 6-40 13-47 (488)
323 COG1486 CelF Alpha-galactosida 96.4 0.015 3.2E-07 53.1 8.2 76 5-92 3-85 (442)
324 PRK01438 murD UDP-N-acetylmura 96.4 0.018 3.9E-07 54.2 9.2 35 5-39 16-50 (480)
325 PRK08773 2-octaprenyl-3-methyl 96.4 0.0037 8E-08 57.2 4.5 35 4-38 5-39 (392)
326 cd01076 NAD_bind_1_Glu_DH NAD( 96.4 0.024 5.2E-07 47.8 9.0 32 5-36 31-63 (227)
327 PRK07231 fabG 3-ketoacyl-(acyl 96.4 0.012 2.5E-07 50.0 7.2 44 1-44 1-45 (251)
328 PF02882 THF_DHG_CYH_C: Tetrah 96.4 0.01 2.2E-07 47.0 6.2 71 5-119 36-107 (160)
329 PRK07236 hypothetical protein; 96.4 0.0053 1.1E-07 56.0 5.2 35 5-39 6-40 (386)
330 PRK14191 bifunctional 5,10-met 96.4 0.012 2.6E-07 51.0 7.0 69 5-117 157-226 (285)
331 PRK08020 ubiF 2-octaprenyl-3-m 96.4 0.0042 9.1E-08 56.7 4.4 38 1-38 1-38 (391)
332 COG0686 Ald Alanine dehydrogen 96.3 0.011 2.5E-07 51.1 6.5 90 6-117 169-265 (371)
333 PF13241 NAD_binding_7: Putati 96.3 0.014 3.1E-07 42.6 6.2 35 4-38 6-40 (103)
334 PRK06753 hypothetical protein; 96.3 0.0049 1.1E-07 55.8 4.6 34 6-39 1-34 (373)
335 PRK00436 argC N-acetyl-gamma-g 96.3 0.022 4.8E-07 51.1 8.7 98 6-125 3-104 (343)
336 PF01494 FAD_binding_3: FAD bi 96.3 0.0045 9.8E-08 55.2 4.2 33 7-39 3-35 (356)
337 cd05212 NAD_bind_m-THF_DH_Cycl 96.3 0.021 4.5E-07 44.3 7.1 70 5-118 28-98 (140)
338 PRK07326 short chain dehydroge 96.3 0.016 3.6E-07 48.7 7.2 40 5-44 6-46 (237)
339 PRK06185 hypothetical protein; 96.2 0.0057 1.2E-07 56.1 4.7 35 5-39 6-40 (407)
340 PRK12939 short chain dehydroge 96.2 0.018 3.9E-07 48.8 7.4 44 1-44 1-47 (250)
341 PRK00141 murD UDP-N-acetylmura 96.2 0.017 3.6E-07 54.3 7.7 36 5-40 15-50 (473)
342 PRK06126 hypothetical protein; 96.2 0.0056 1.2E-07 58.6 4.6 36 4-39 6-41 (545)
343 PRK07877 hypothetical protein; 96.2 0.018 3.9E-07 56.5 7.9 32 6-38 108-141 (722)
344 PRK14982 acyl-ACP reductase; P 96.2 0.009 2E-07 53.2 5.4 40 5-44 155-197 (340)
345 COG0136 Asd Aspartate-semialde 96.2 0.062 1.3E-06 47.4 10.5 144 6-183 2-156 (334)
346 KOG0068 D-3-phosphoglycerate d 96.2 0.016 3.4E-07 50.8 6.6 101 6-133 147-251 (406)
347 COG2344 AT-rich DNA-binding pr 96.2 0.01 2.2E-07 47.5 5.0 76 4-106 83-166 (211)
348 PRK10792 bifunctional 5,10-met 96.2 0.018 3.9E-07 49.9 6.9 69 5-118 159-229 (285)
349 TIGR01381 E1_like_apg7 E1-like 96.2 0.0018 3.8E-08 61.8 0.9 32 6-37 339-371 (664)
350 PRK07411 hypothetical protein; 96.1 0.0095 2.1E-07 54.5 5.4 33 6-38 39-72 (390)
351 PF00899 ThiF: ThiF family; I 96.1 0.0082 1.8E-07 46.2 4.3 33 6-38 3-36 (135)
352 COG4074 Mth H2-forming N5,N10- 96.1 0.22 4.8E-06 41.1 12.5 103 76-181 131-237 (343)
353 PRK13394 3-hydroxybutyrate deh 96.1 0.022 4.9E-07 48.6 7.4 43 5-47 7-50 (262)
354 PRK07588 hypothetical protein; 96.1 0.0071 1.5E-07 55.3 4.5 34 6-39 1-34 (391)
355 PF05368 NmrA: NmrA-like famil 96.1 0.027 5.9E-07 47.4 7.7 32 8-39 1-33 (233)
356 PF01266 DAO: FAD dependent ox 96.1 0.0088 1.9E-07 53.3 4.9 31 7-37 1-31 (358)
357 PRK06349 homoserine dehydrogen 96.1 0.023 5E-07 52.6 7.7 67 5-95 3-83 (426)
358 PRK05671 aspartate-semialdehyd 96.1 0.017 3.7E-07 51.6 6.6 141 1-178 1-149 (336)
359 PRK07666 fabG 3-ketoacyl-(acyl 96.1 0.026 5.6E-07 47.6 7.4 44 1-44 1-47 (239)
360 PRK01390 murD UDP-N-acetylmura 96.0 0.02 4.4E-07 53.6 7.3 35 5-39 9-43 (460)
361 PRK07538 hypothetical protein; 96.0 0.0077 1.7E-07 55.5 4.5 34 6-39 1-34 (413)
362 PRK01710 murD UDP-N-acetylmura 96.0 0.07 1.5E-06 50.0 10.8 35 5-39 14-48 (458)
363 COG0665 DadA Glycine/D-amino a 96.0 0.0095 2.1E-07 54.1 5.0 35 4-38 3-37 (387)
364 PRK10637 cysG siroheme synthas 96.0 0.086 1.9E-06 49.3 11.3 130 5-176 12-146 (457)
365 PRK11259 solA N-methyltryptoph 96.0 0.0077 1.7E-07 54.6 4.3 32 7-38 5-36 (376)
366 PRK08013 oxidoreductase; Provi 96.0 0.0074 1.6E-07 55.4 4.2 34 6-39 4-37 (400)
367 PRK07454 short chain dehydroge 96.0 0.027 5.9E-07 47.5 7.4 41 4-44 5-46 (241)
368 COG0654 UbiH 2-polyprenyl-6-me 96.0 0.0086 1.9E-07 54.7 4.6 33 5-37 2-34 (387)
369 PF12847 Methyltransf_18: Meth 96.0 0.23 5E-06 36.3 11.6 96 6-119 3-110 (112)
370 PLN03075 nicotianamine synthas 96.0 0.043 9.3E-07 47.9 8.4 101 5-120 124-233 (296)
371 PRK06475 salicylate hydroxylas 96.0 0.008 1.7E-07 55.2 4.2 34 6-39 3-36 (400)
372 PRK06139 short chain dehydroge 96.0 0.16 3.4E-06 45.4 12.4 42 5-46 7-49 (330)
373 TIGR01850 argC N-acetyl-gamma- 96.0 0.032 6.9E-07 50.2 7.9 98 6-124 1-103 (346)
374 PRK07878 molybdopterin biosynt 96.0 0.013 2.9E-07 53.6 5.5 33 6-38 43-76 (392)
375 PRK09414 glutamate dehydrogena 96.0 0.036 7.9E-07 51.2 8.3 31 5-35 232-263 (445)
376 PRK08850 2-octaprenyl-6-methox 96.0 0.0093 2E-07 54.8 4.6 36 1-37 1-36 (405)
377 PRK07478 short chain dehydroge 95.9 0.03 6.4E-07 47.7 7.4 41 5-45 6-47 (254)
378 PRK07190 hypothetical protein; 95.9 0.011 2.3E-07 55.8 5.0 40 1-40 1-40 (487)
379 TIGR03366 HpnZ_proposed putati 95.9 0.43 9.3E-06 41.4 14.8 39 6-44 122-161 (280)
380 PRK10157 putative oxidoreducta 95.9 0.011 2.3E-07 54.9 4.8 38 1-38 1-38 (428)
381 PRK05335 tRNA (uracil-5-)-meth 95.9 0.011 2.3E-07 54.3 4.7 34 5-38 2-35 (436)
382 PRK09072 short chain dehydroge 95.9 0.029 6.2E-07 48.1 7.2 44 1-44 1-45 (263)
383 PRK14178 bifunctional 5,10-met 95.9 0.032 7E-07 48.2 7.3 70 5-118 152-222 (279)
384 PRK07364 2-octaprenyl-6-methox 95.9 0.0089 1.9E-07 55.0 4.2 34 6-39 19-52 (415)
385 PRK14176 bifunctional 5,10-met 95.9 0.022 4.7E-07 49.4 6.2 33 5-37 164-197 (287)
386 PRK06172 short chain dehydroge 95.9 0.032 7E-07 47.5 7.4 40 5-44 7-47 (253)
387 PRK00421 murC UDP-N-acetylmura 95.9 0.029 6.3E-07 52.6 7.6 35 5-39 7-42 (461)
388 PRK08849 2-octaprenyl-3-methyl 95.9 0.011 2.4E-07 53.9 4.7 33 6-38 4-36 (384)
389 PRK07523 gluconate 5-dehydroge 95.9 0.034 7.3E-07 47.4 7.4 40 5-44 10-50 (255)
390 PRK12828 short chain dehydroge 95.9 0.13 2.8E-06 43.0 10.9 39 5-43 7-46 (239)
391 KOG1399 Flavin-containing mono 95.8 0.01 2.2E-07 55.1 4.2 36 4-39 5-40 (448)
392 TIGR02360 pbenz_hydroxyl 4-hyd 95.8 0.012 2.7E-07 53.8 4.8 34 6-39 3-36 (390)
393 TIGR01377 soxA_mon sarcosine o 95.8 0.01 2.2E-07 53.8 4.3 31 7-37 2-32 (380)
394 PRK08862 short chain dehydroge 95.8 0.035 7.6E-07 46.7 7.2 46 1-46 1-47 (227)
395 PRK08217 fabG 3-ketoacyl-(acyl 95.8 0.036 7.9E-07 46.9 7.5 45 1-45 1-46 (253)
396 TIGR00137 gid_trmFO tRNA:m(5)U 95.8 0.011 2.3E-07 54.5 4.3 33 7-39 2-34 (433)
397 TIGR03325 BphB_TodD cis-2,3-di 95.8 0.028 6E-07 48.2 6.7 44 1-44 1-45 (262)
398 PRK08340 glucose-1-dehydrogena 95.8 0.029 6.2E-07 48.1 6.7 42 6-47 1-43 (259)
399 PLN00093 geranylgeranyl diphos 95.8 0.015 3.2E-07 54.3 5.1 36 4-39 38-73 (450)
400 PRK07102 short chain dehydroge 95.8 0.033 7.2E-07 47.1 6.9 39 6-44 2-41 (243)
401 PRK07774 short chain dehydroge 95.8 0.041 8.8E-07 46.7 7.4 40 5-44 6-46 (250)
402 PRK07825 short chain dehydroge 95.7 0.036 7.7E-07 47.8 7.1 44 1-44 1-45 (273)
403 PRK06124 gluconate 5-dehydroge 95.7 0.042 9.2E-07 46.8 7.5 40 5-44 11-51 (256)
404 PRK07890 short chain dehydroge 95.7 0.041 8.9E-07 46.9 7.4 41 4-44 4-45 (258)
405 PRK01747 mnmC bifunctional tRN 95.7 0.012 2.5E-07 57.8 4.4 33 6-38 261-293 (662)
406 TIGR01988 Ubi-OHases Ubiquinon 95.7 0.011 2.4E-07 53.7 4.0 32 8-39 2-33 (385)
407 PRK05866 short chain dehydroge 95.7 0.041 8.9E-07 48.2 7.5 41 6-46 41-82 (293)
408 PRK05565 fabG 3-ketoacyl-(acyl 95.7 0.04 8.7E-07 46.5 7.2 44 1-44 1-46 (247)
409 TIGR03466 HpnA hopanoid-associ 95.7 0.02 4.3E-07 50.7 5.5 35 6-40 1-36 (328)
410 PRK07067 sorbitol dehydrogenas 95.7 0.036 7.8E-07 47.3 6.9 40 5-44 6-46 (257)
411 COG0289 DapB Dihydrodipicolina 95.7 0.11 2.3E-06 44.3 9.3 35 5-39 2-39 (266)
412 PRK09126 hypothetical protein; 95.7 0.014 3.1E-07 53.2 4.5 34 6-39 4-37 (392)
413 TIGR03219 salicylate_mono sali 95.7 0.014 2.9E-07 53.9 4.4 34 6-39 1-35 (414)
414 PRK06617 2-octaprenyl-6-methox 95.7 0.014 3E-07 53.1 4.4 32 6-37 2-33 (374)
415 PRK05714 2-octaprenyl-3-methyl 95.6 0.011 2.4E-07 54.2 3.7 32 7-38 4-35 (405)
416 PRK05732 2-octaprenyl-6-methox 95.6 0.015 3.2E-07 53.1 4.5 32 6-37 4-38 (395)
417 TIGR03364 HpnW_proposed FAD de 95.6 0.016 3.4E-07 52.4 4.6 32 7-38 2-33 (365)
418 TIGR01984 UbiH 2-polyprenyl-6- 95.6 0.012 2.5E-07 53.6 3.8 32 8-39 2-34 (382)
419 PLN02985 squalene monooxygenas 95.6 0.017 3.8E-07 54.8 5.1 34 5-38 43-76 (514)
420 TIGR01546 GAPDH-II_archae glyc 95.6 0.047 1E-06 48.5 7.4 85 8-97 1-88 (333)
421 COG0190 FolD 5,10-methylene-te 95.6 0.022 4.7E-07 48.9 5.1 68 5-117 156-225 (283)
422 PLN02780 ketoreductase/ oxidor 95.6 0.039 8.5E-07 49.1 7.0 43 6-48 54-97 (320)
423 PRK08703 short chain dehydroge 95.6 0.05 1.1E-06 45.9 7.4 39 6-44 7-46 (239)
424 PRK06138 short chain dehydroge 95.6 0.045 9.7E-07 46.4 7.1 44 1-44 1-45 (252)
425 TIGR03201 dearomat_had 6-hydro 95.6 0.61 1.3E-05 41.8 14.8 40 5-44 167-206 (349)
426 PF00743 FMO-like: Flavin-bind 95.6 0.013 2.8E-07 55.7 4.0 34 6-39 2-35 (531)
427 PRK12429 3-hydroxybutyrate deh 95.6 0.049 1.1E-06 46.3 7.3 40 5-44 4-44 (258)
428 PLN02383 aspartate semialdehyd 95.6 0.052 1.1E-06 48.7 7.6 93 3-124 5-104 (344)
429 PRK12826 3-ketoacyl-(acyl-carr 95.6 0.047 1E-06 46.2 7.2 40 5-44 6-46 (251)
430 PRK11728 hydroxyglutarate oxid 95.6 0.014 3.1E-07 53.4 4.2 33 6-38 3-37 (393)
431 PRK08277 D-mannonate oxidoredu 95.6 0.047 1E-06 47.2 7.2 39 6-44 11-50 (278)
432 PRK06180 short chain dehydroge 95.6 0.036 7.9E-07 48.0 6.6 40 5-44 4-44 (277)
433 PRK14183 bifunctional 5,10-met 95.6 0.025 5.4E-07 48.9 5.3 69 5-118 157-227 (281)
434 PF01262 AlaDh_PNT_C: Alanine 95.5 0.043 9.2E-07 44.0 6.3 39 6-44 21-59 (168)
435 PRK05993 short chain dehydroge 95.5 0.04 8.7E-07 47.7 6.7 40 5-44 4-44 (277)
436 PLN02172 flavin-containing mon 95.5 0.017 3.6E-07 54.1 4.5 34 5-38 10-43 (461)
437 PRK09880 L-idonate 5-dehydroge 95.5 0.16 3.5E-06 45.5 10.7 40 5-44 170-210 (343)
438 PRK08267 short chain dehydroge 95.5 0.04 8.7E-07 47.1 6.6 39 6-44 2-41 (260)
439 PRK07576 short chain dehydroge 95.5 0.053 1.2E-06 46.6 7.4 39 6-44 10-49 (264)
440 PRK06200 2,3-dihydroxy-2,3-dih 95.5 0.047 1E-06 46.8 7.0 40 5-44 6-46 (263)
441 PF10100 DUF2338: Uncharacteri 95.5 0.6 1.3E-05 42.2 13.8 170 5-184 1-200 (429)
442 PRK08945 putative oxoacyl-(acy 95.5 0.05 1.1E-06 46.1 7.1 40 5-44 12-52 (247)
443 PRK05786 fabG 3-ketoacyl-(acyl 95.5 0.057 1.2E-06 45.4 7.4 44 1-44 1-45 (238)
444 PRK06270 homoserine dehydrogen 95.5 0.027 5.8E-07 50.6 5.6 22 6-27 3-24 (341)
445 PRK07063 short chain dehydroge 95.5 0.053 1.1E-06 46.3 7.3 41 6-46 8-49 (260)
446 COG1179 Dinucleotide-utilizing 95.5 0.035 7.7E-07 46.5 5.8 38 6-43 31-69 (263)
447 COG3349 Uncharacterized conser 95.5 0.017 3.7E-07 53.5 4.3 33 6-38 1-33 (485)
448 PRK08085 gluconate 5-dehydroge 95.5 0.054 1.2E-06 46.1 7.2 40 6-45 10-50 (254)
449 TIGR03649 ergot_EASG ergot alk 95.5 0.025 5.5E-07 49.2 5.3 35 7-41 1-36 (285)
450 PRK06728 aspartate-semialdehyd 95.5 0.12 2.5E-06 46.4 9.4 97 1-124 1-103 (347)
451 PRK07109 short chain dehydroge 95.5 0.33 7.3E-06 43.4 12.5 40 6-45 9-49 (334)
452 cd08230 glucose_DH Glucose deh 95.5 0.26 5.6E-06 44.3 11.9 40 5-44 173-215 (355)
453 TIGR01202 bchC 2-desacetyl-2-h 95.4 0.12 2.5E-06 45.7 9.4 39 6-44 146-185 (308)
454 PRK14852 hypothetical protein; 95.4 0.065 1.4E-06 53.9 8.3 33 6-38 333-366 (989)
455 PLN02520 bifunctional 3-dehydr 95.4 0.036 7.8E-07 52.8 6.4 39 6-44 380-418 (529)
456 PLN02927 antheraxanthin epoxid 95.4 0.019 4.1E-07 55.9 4.6 35 4-38 80-114 (668)
457 PF03447 NAD_binding_3: Homose 95.4 0.068 1.5E-06 39.9 6.7 61 12-94 1-69 (117)
458 PRK05867 short chain dehydroge 95.4 0.058 1.3E-06 45.9 7.2 41 5-45 9-50 (253)
459 PRK10538 malonic semialdehyde 95.4 0.046 1E-06 46.4 6.5 39 6-44 1-40 (248)
460 cd01491 Ube1_repeat1 Ubiquitin 95.4 0.25 5.5E-06 43.0 11.1 33 6-38 20-53 (286)
461 PRK08278 short chain dehydroge 95.4 0.22 4.7E-06 43.1 10.8 36 5-40 6-42 (273)
462 PRK09186 flagellin modificatio 95.4 0.057 1.2E-06 45.9 7.1 42 5-46 4-46 (256)
463 PRK08243 4-hydroxybenzoate 3-m 95.4 0.02 4.4E-07 52.3 4.6 34 6-39 3-36 (392)
464 PRK14851 hypothetical protein; 95.4 0.057 1.2E-06 52.8 7.7 33 6-38 44-77 (679)
465 TIGR01296 asd_B aspartate-semi 95.4 0.028 6E-07 50.4 5.2 90 7-123 1-95 (339)
466 PF00185 OTCace: Aspartate/orn 95.4 0.078 1.7E-06 42.0 7.2 78 6-94 3-83 (158)
467 TIGR01373 soxB sarcosine oxida 95.4 0.022 4.8E-07 52.3 4.6 31 7-37 32-64 (407)
468 PRK08264 short chain dehydroge 95.3 0.041 8.8E-07 46.3 5.9 38 4-41 5-44 (238)
469 PRK08017 oxidoreductase; Provi 95.3 0.043 9.4E-07 46.7 6.2 39 6-44 3-42 (256)
470 COG0771 MurD UDP-N-acetylmuram 95.3 0.032 7E-07 51.5 5.6 36 5-40 7-42 (448)
471 COG3380 Predicted NAD/FAD-depe 95.3 0.026 5.6E-07 48.2 4.5 34 6-39 2-35 (331)
472 PRK13369 glycerol-3-phosphate 95.3 0.025 5.4E-07 53.6 5.0 36 2-37 3-38 (502)
473 PRK06194 hypothetical protein; 95.3 0.066 1.4E-06 46.5 7.3 40 5-44 6-46 (287)
474 cd01079 NAD_bind_m-THF_DH NAD 95.3 0.09 1.9E-06 42.8 7.4 85 5-119 62-155 (197)
475 PRK06101 short chain dehydroge 95.3 0.049 1.1E-06 46.0 6.3 39 6-44 2-41 (240)
476 COG4221 Short-chain alcohol de 95.3 0.063 1.4E-06 45.2 6.6 48 1-48 1-50 (246)
477 PRK07208 hypothetical protein; 95.3 0.025 5.4E-07 53.2 4.8 37 1-38 1-37 (479)
478 cd05295 MDH_like Malate dehydr 95.3 0.2 4.3E-06 46.5 10.4 104 6-123 124-253 (452)
479 PRK07831 short chain dehydroge 95.2 0.06 1.3E-06 46.1 6.8 43 5-47 17-61 (262)
480 PRK08339 short chain dehydroge 95.2 0.077 1.7E-06 45.6 7.4 41 6-46 9-50 (263)
481 PRK06184 hypothetical protein; 95.2 0.025 5.3E-07 53.6 4.6 34 6-39 4-37 (502)
482 PRK08265 short chain dehydroge 95.2 0.065 1.4E-06 45.9 6.9 40 5-44 6-46 (261)
483 PRK14190 bifunctional 5,10-met 95.2 0.069 1.5E-06 46.4 6.9 70 5-118 158-228 (284)
484 PRK07814 short chain dehydroge 95.2 0.078 1.7E-06 45.5 7.4 40 5-44 10-50 (263)
485 TIGR01761 thiaz-red thiazoliny 95.2 0.23 4.9E-06 44.6 10.4 66 5-94 3-72 (343)
486 TIGR03840 TMPT_Se_Te thiopurin 95.2 0.45 9.7E-06 39.7 11.6 98 6-115 36-147 (213)
487 KOG1014 17 beta-hydroxysteroid 95.2 0.055 1.2E-06 47.0 6.2 45 7-51 50-96 (312)
488 PRK05884 short chain dehydroge 95.2 0.054 1.2E-06 45.4 6.1 38 7-44 2-40 (223)
489 PRK12266 glpD glycerol-3-phosp 95.2 0.029 6.4E-07 53.2 5.0 32 6-37 7-38 (508)
490 PLN00141 Tic62-NAD(P)-related 95.2 0.05 1.1E-06 46.4 6.0 38 5-42 17-55 (251)
491 PRK11101 glpA sn-glycerol-3-ph 95.2 0.029 6.3E-07 53.7 5.0 32 6-37 7-38 (546)
492 PRK06598 aspartate-semialdehyd 95.2 0.08 1.7E-06 47.8 7.4 93 6-123 2-101 (369)
493 PLN02358 glyceraldehyde-3-phos 95.2 0.083 1.8E-06 47.2 7.5 37 1-37 1-39 (338)
494 PRK10015 oxidoreductase; Provi 95.2 0.028 6E-07 52.2 4.7 39 1-39 1-39 (429)
495 PRK06720 hypothetical protein; 95.2 0.094 2E-06 42.0 7.2 39 6-44 17-56 (169)
496 cd08237 ribitol-5-phosphate_DH 95.2 0.18 4E-06 45.1 9.9 40 5-44 164-205 (341)
497 PRK06179 short chain dehydroge 95.2 0.22 4.8E-06 42.8 10.0 40 1-41 1-41 (270)
498 PRK07035 short chain dehydroge 95.1 0.088 1.9E-06 44.7 7.4 40 5-44 8-48 (252)
499 PRK06057 short chain dehydroge 95.1 0.062 1.3E-06 45.8 6.5 40 5-44 7-47 (255)
500 PRK08213 gluconate 5-dehydroge 95.1 0.084 1.8E-06 45.1 7.3 40 5-44 12-52 (259)
No 1
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=2.8e-72 Score=482.03 Aligned_cols=283 Identities=51% Similarity=0.799 Sum_probs=275.2
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+++|+|||+|.||++||..++.+||+|+++|++++.++++.+.+++.+++++++|.++.++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 47899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~ 163 (297)
+||+|||+++|+.++|+++|++++.++++++|++||||+++++++++.+.+|+|++|+||||||+++++|||+.+..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~ 243 (297)
++++++.++++.+|+.|++++|.|||++||++.++++||++++++|++++++||.+++.++|||+|||+++|.+|+|+.+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022434 244 SIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286 (297)
Q Consensus 244 ~~~~~~~~~~~-~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~ 286 (297)
.+++.+++.++ ++.|.|++++++|++.|++|+|+|+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 99999998888 45788999999999999999999999999985
No 2
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9.3e-74 Score=456.23 Aligned_cols=283 Identities=52% Similarity=0.848 Sum_probs=270.7
Q ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhh-----cccCCCcEEec
Q 022434 3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVG-----TDAPRRLRCTS 77 (297)
Q Consensus 3 ~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~i~~~~ 77 (297)
.++++|+|||+|.||++||+..+.+|++|+++|++++.++++.+.|.+.+.++.+++..+.... +..+++|+.++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999999999999999999999998887654433 56678999999
Q ss_pred Cccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEe
Q 022434 78 NLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVI 156 (297)
Q Consensus 78 ~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~ 156 (297)
+.++ ++++|+|||++.|+.++|..+|++|+..+++++|++||||++.+++++..+++|.||.|+|||||++++.++|++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 9887 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHh
Q 022434 157 RGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADF 236 (297)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~ 236 (297)
.+..|+++++.....+.+.+|+.++.++|.||||+||++.++++||+++++.|.++.+|||.||++|.|+|+||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHhhcC-CCCCCCcHHHHHHHHcCCCCcccCCcccccC
Q 022434 237 IGLDVCLSIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285 (297)
Q Consensus 237 ~Gl~~~~~~~~~~~~~~~-~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~ 285 (297)
+|||++..+|+.|++.++ +..|.|+|+|.++|++|++|||+|.|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 999999999999999994 5689999999999999999999999999994
No 3
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.2e-69 Score=469.99 Aligned_cols=284 Identities=43% Similarity=0.712 Sum_probs=276.3
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
|++.+++|+|||+|.||.+||..|+.+||+|++||++++.++.+.+++++.+++++++|.++..+.+..+++++.+++++
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 80 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG 80 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH
Confidence 77788899999999999999999999999999999999999999999999999999999999888888999999999998
Q ss_pred ccCCCcEEEEeccccHHHHHHHHHHHHhhc-CCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCC
Q 022434 81 DLHSADIIVEAIVESEDVKKKLFSELDKIT-KASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGA 159 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~-~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~ 159 (297)
++++||+||||+||+.++|+++|+++++.+ ++++|++||||+++++.++..+.+|+|++|+|||+||++++++||+++.
T Consensus 81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~ 160 (286)
T PRK07819 81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTL 160 (286)
T ss_pred HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCC
Confidence 899999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHH-HcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhc
Q 022434 160 DTSDETFRATKALAE-RFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG 238 (297)
Q Consensus 160 ~~~~~~~~~~~~ll~-~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~G 238 (297)
.|++++++++.+++. .+|+.|++++|.|||++||++.+++|||++++++|++++++||.+++.|+|||+|||+++|.+|
T Consensus 161 ~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~G 240 (286)
T PRK07819 161 VTSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG 240 (286)
T ss_pred CCCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhc
Confidence 999999999999988 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022434 239 LDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284 (297)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~ 284 (297)
++.+..+++.+++.+++++|.|++++++|+++|++|+|+|+|||+|
T Consensus 241 ld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 241 LDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999999878999999999999999999999999998
No 4
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=7.6e-66 Score=476.70 Aligned_cols=287 Identities=39% Similarity=0.633 Sum_probs=276.2
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
++++|+|||+|.||++||.+|+++||+|++||+++++++++.+++++.+++++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~ 163 (297)
+||+||||+||+.++|+.+|++++..+++++||+||||+++++++++.+.+|.|++|+|||+|+++++++|++.+..|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~ 243 (297)
++++++.++++.+|+.|+++++.|||+.||++.++++||+.++++|++++++||.+++.++|||+|||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCC
Q 022434 244 SIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPES 290 (297)
Q Consensus 244 ~~~~~~~~~~-~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~~ 290 (297)
.+++.+++.+ ++++|.|++++++|+++|++|+|+|+|||+|++++..
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~ 291 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEA 291 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCC
Confidence 9999998774 6778999999999999999999999999999865443
No 5
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=9.1e-65 Score=487.50 Aligned_cols=287 Identities=34% Similarity=0.539 Sum_probs=275.4
Q ss_pred CCcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
++++|+|||+|.||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|+.+++++++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF 382 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh
Confidence 5689999999999999999998 589999999999999999999999999999999999999889999999999999889
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~ 162 (297)
++||+|||++||+.++|+++|++|++.+++++|++||||+++++++++.+.+|+|++|+|||+||+.+++|||+.++.|+
T Consensus 383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~ 462 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTS 462 (699)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHH
Q 022434 163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC 242 (297)
Q Consensus 163 ~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~ 242 (297)
+++++.+..+++.+||.|++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++
T Consensus 463 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~-~~~dID~a~~-~~G~p~GPf~l~D~vGld~~ 540 (699)
T TIGR02440 463 EQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGE-PVEHIDKALV-KFGFPVGPITLLDEVGIDVG 540 (699)
T ss_pred HHHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH-HcCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999996 9999999997 89999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCCCCC
Q 022434 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKP 293 (297)
Q Consensus 243 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~~~~~ 293 (297)
..+++.+++.+++ +|.|++++++|+++|++|+|+|+|||+|+.+++...+
T Consensus 541 ~~i~~~l~~~~~~-~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~ 590 (699)
T TIGR02440 541 AKISPILEAELGE-RFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAV 590 (699)
T ss_pred HHHHHHHHHhcCC-CCCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCC
Confidence 9999999999998 7999999999999999999999999999866554333
No 6
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.2e-64 Score=468.41 Aligned_cols=288 Identities=41% Similarity=0.618 Sum_probs=276.7
Q ss_pred CCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 2 EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 2 ~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++++++|+|||+|.||.+||.+|+.+||+|++||+++++++++.+++++.+++++++|.++.++.+..+++++.++++++
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT 161 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~ 161 (297)
+++||+||||++|+.++|+.+|++++..+++++|++||||++++++++..+.+|+|++|+|||+|+++++++|++.+..|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHH
Q 022434 162 SDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV 241 (297)
Q Consensus 162 ~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~ 241 (297)
++++++++.++++.+|+.|++++|.|||++||++.++++||+.++++|++++++||.+++.++|||+|||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022434 242 CLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE 289 (297)
Q Consensus 242 ~~~~~~~~~~~~-~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~ 289 (297)
.+.+++.++..+ ++++|.|++++++|++.|++|+|+|+|||+|+++++
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~ 292 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAK 292 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCC
Confidence 999999888764 566899999999999999999999999999976544
No 7
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.4e-64 Score=486.22 Aligned_cols=282 Identities=35% Similarity=0.502 Sum_probs=271.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
++++|+|||+|.||++||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|+.++++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 391 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFD 391 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~ 163 (297)
+||+|||+++|+.++|+++|++|++.+++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~ 471 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSD 471 (714)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~ 243 (297)
++++.+.++++.+||.|++++|.|||++||++.++++||+.++++| +++++||.+++.++|||+|||+++|.+|+|+++
T Consensus 472 ~~~~~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~ 550 (714)
T TIGR02437 472 ETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGH 550 (714)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999 799999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC-CCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022434 244 SIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286 (297)
Q Consensus 244 ~~~~~~~~~~~~~~-~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~ 286 (297)
.+++.++..+++.. ..|++++.+|+++|++|+|+|+|||+|++
T Consensus 551 ~i~~~~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~ 594 (714)
T TIGR02437 551 HAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEA 594 (714)
T ss_pred HHHHHHHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEeccc
Confidence 99999998888732 24578999999999999999999999963
No 8
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.2e-64 Score=487.47 Aligned_cols=282 Identities=33% Similarity=0.535 Sum_probs=272.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
++++|+|||+|.||++||..++.+|++|+++|++++.+++..+++++.+++++++|.+++++.+..+++|+.++++++++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 413 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFK 413 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~ 163 (297)
+||+|||+++|+.++|+++|++|++.+++++|++||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus 414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~ 493 (737)
T TIGR02441 414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSK 493 (737)
T ss_pred cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~ 243 (297)
++++.+..+++.+||.|++++|.|||++||++.++++||+.++++|+ ++++||.+++ ++|+|+|||+++|.+|+|+++
T Consensus 494 ~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv-~~~~ID~a~~-~~G~p~GP~~l~D~vGld~~~ 571 (737)
T TIGR02441 494 DTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGV-DPKKLDKLTT-KFGFPVGAATLADEVGVDVAE 571 (737)
T ss_pred HHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999985 899999999999999999999
Q ss_pred HHHHHHHhhcCCCCC--CCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022434 244 SIMKVLHTGLGDSKY--APCPLLVQYVDAGRLGKKRGIGVFDYRRVP 288 (297)
Q Consensus 244 ~~~~~~~~~~~~~~~--~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~ 288 (297)
.+++.++..+++ +| .|++++.+|+++|++|+|+|+|||+|++++
T Consensus 572 ~v~~~l~~~~~~-~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~ 617 (737)
T TIGR02441 572 HVAEDLGKAFGE-RFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGK 617 (737)
T ss_pred HHHHHHHHhcCc-ccccccCHHHHHHHHCCCCcccCCCeeEEcCCCC
Confidence 999999999887 66 378999999999999999999999998654
No 9
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.4e-64 Score=487.32 Aligned_cols=283 Identities=35% Similarity=0.508 Sum_probs=272.4
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+++|+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+++|++++++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 391 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFE 391 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~ 163 (297)
+||+|||++||++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~ 471 (715)
T PRK11730 392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSD 471 (715)
T ss_pred CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~ 243 (297)
++++.+.++++.+||.|++++|.|||++||++.++++||+.++++| +++++||.+++.++|||+|||+++|.+|+|++.
T Consensus 472 ~~~~~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~ 550 (715)
T PRK11730 472 ETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAH 550 (715)
T ss_pred HHHHHHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhhCCCccCHHHHHHhhchHHHH
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC-CCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022434 244 SIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287 (297)
Q Consensus 244 ~~~~~~~~~~~~~~-~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~ 287 (297)
.+++.++..+++.. +.|++++.+|+++|++|+|+|+|||+|+++
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 595 (715)
T PRK11730 551 HAQAVMAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEED 595 (715)
T ss_pred HHHHHHHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccC
Confidence 99999998888742 345789999999999999999999999743
No 10
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.4e-63 Score=433.13 Aligned_cols=282 Identities=29% Similarity=0.513 Sum_probs=266.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-hcccCCCcEEecCccc-
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV-GTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~- 81 (297)
++++|+|||+|.||.+||..|+.+|++|++||++++.++.+.+.+++.++.+.+.+.++.++ .+....+++.++++++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46799999999999999999999999999999999999999999999999888888877665 5666788999999876
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT 161 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~ 161 (297)
+++||+||+|+|++.++|+.+++++.+.+++++||++|||+++++++++.+.+|.|++|+||++|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchH
Q 022434 162 SDETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240 (297)
Q Consensus 162 ~~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~ 240 (297)
++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|++++++||.+++.++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999988 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCC-CCcHHHHHHHHcCCCCcccCCcccccC
Q 022434 241 VCLSIMKVLHTGLGDSKY-APCPLLVQYVDAGRLGKKRGIGVFDYR 285 (297)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-~p~~~l~~~~~~g~~G~~~g~Gfy~~~ 285 (297)
.+..+++.+++.++++++ .|++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999998664 389999999999999999999999995
No 11
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=9.7e-64 Score=481.46 Aligned_cols=283 Identities=36% Similarity=0.550 Sum_probs=273.5
Q ss_pred CCcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
.+++|+|||+|.||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.+++++.+...++|+++++++++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 387 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGF 387 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHh
Confidence 4789999999999999999999 889999999999999999999999999999999999998888999999999999889
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~ 162 (297)
++||+|||++||+.++|+++|+++++++++++|++||||++++++|++.+.+|+|++|+|||+||+.+++|||++++.|+
T Consensus 388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts 467 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTS 467 (708)
T ss_pred ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHH
Q 022434 163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC 242 (297)
Q Consensus 163 ~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~ 242 (297)
+++++.+..+++.+|+.|++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|.+
T Consensus 468 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv-~~~dID~a~~-~~G~p~GPf~~~D~~Gld~~ 545 (708)
T PRK11154 468 AETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGE-PIEHIDAALV-KFGFPVGPITLLDEVGIDVG 545 (708)
T ss_pred HHHHHHHHHHHHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCCCCHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999996 9999999998 89999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022434 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE 289 (297)
Q Consensus 243 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~ 289 (297)
..+++.+++.+++ +|.|++++++|+++|++|+|+|+|||+|+++++
T Consensus 546 ~~i~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~ 591 (708)
T PRK11154 546 TKIIPILEAALGE-RFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGK 591 (708)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHCCCCcccCCceEEECCCCcc
Confidence 9999999998886 799999999999999999999999999986443
No 12
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=5.3e-63 Score=433.96 Aligned_cols=286 Identities=76% Similarity=1.171 Sum_probs=273.4
Q ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 3 ~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
+++++|+|||+|.||.+||..|+.+|++|++||+++++++...+++++.++++++.|.++.++.+...+++.++++.+.+
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL 81 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999888777777888888888789
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~ 162 (297)
++||+||+|++|+.++|+.+++++.+.++++++|+||||+++++++++.+.++.+++++||++||...+++|++.+..++
T Consensus 82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~ 161 (295)
T PLN02545 82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTS 161 (295)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHH
Q 022434 163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC 242 (297)
Q Consensus 163 ~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~ 242 (297)
+++++.+.++++.+|+.+++++|.|||++||++.++++||++++++|++++++||.+++.|+|||+|||+++|.+|++.+
T Consensus 162 ~e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~ 241 (295)
T PLN02545 162 DEVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTC 241 (295)
T ss_pred HHHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022434 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP 288 (297)
Q Consensus 243 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~ 288 (297)
..+++.+++.+++++|.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 242 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 242 LSIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 9999999999988789999999999999999999999999997644
No 13
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.9e-63 Score=432.05 Aligned_cols=284 Identities=45% Similarity=0.713 Sum_probs=269.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+++...++..++.|.++..+.+....+++.++++++ ++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 46899999999999999999999999999999999999998888888888888888887777777888998888865 89
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~ 163 (297)
+||+||+|+|++.++|+.++.++.+.+++++++++|||+++++++++.+.++.+++|+||++|++.++++|++.++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~ 243 (297)
+++++++++++.+|++|++++|.|||++||++.++++||+.++++|++++++||.+++.|+|||+|||+++|.+|++.+.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022434 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE 289 (297)
Q Consensus 244 ~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~~ 289 (297)
..++.++..+++ +|.|+++|.+|+++|++|+|+|+|||+|+++++
T Consensus 241 ~~~~~l~~~~~~-~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~~ 285 (288)
T PRK09260 241 NNLKYLHETLGE-KYRPAPLLEKYVKAGRLGRKTGRGVYDYTNREN 285 (288)
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCCCCccccCCEEEECCCCCC
Confidence 999999998887 799999999999999999999999999987543
No 14
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.9e-63 Score=431.46 Aligned_cols=280 Identities=56% Similarity=0.901 Sum_probs=269.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
+++|+|||+|.||.+||..|+.+|++|+++|+++++++...+++++.++.+.+.|.++..+.+....+++++++++++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 57899999999999999999999999999999999999999999999999999998887777777788888888888999
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHH
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDE 164 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~ 164 (297)
||+||+|+|++.++|+++++++.+.++++++++|+||+++++.+++.+.++.|++++||++|+++++++|++++.+|+++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e 162 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA 162 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHH
Q 022434 165 TFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244 (297)
Q Consensus 165 ~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~ 244 (297)
+++.+.++++.+|+.|++++|.|||+.||++.+++|||++++++|++++++||.++++|+|||+|||+++|.+|++.+..
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~ 242 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022434 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284 (297)
Q Consensus 245 ~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~ 284 (297)
+++.+++.+++++|+|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 9999999998878999999999999999999999999999
No 15
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-62 Score=430.42 Aligned_cols=284 Identities=55% Similarity=0.921 Sum_probs=270.7
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
++++|+|||+|.||.+||..|+.+|++|++||++++.++.+.+.+++.++.+.+.|.++..+.+....+++.++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999999899998998888899888777777778889888888899
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~ 163 (297)
+||+||+|+|++.++|+.+++++.+.++++++|+|+||+++++.+++.+.+|.|++|+||++|++.++++|++.+.+|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988899999999999998999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHH
Q 022434 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~ 243 (297)
++++.+.++++.+|+.+++++|.|||++||++.++++|++.++++|++++++||.+++.|+|||+|||+++|.+|++.+.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022434 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287 (297)
Q Consensus 244 ~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~ 287 (297)
.+++.+++.+++++|+|++++.+|+++|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 99999999998878999999999999999999999999999654
No 16
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.8e-62 Score=429.57 Aligned_cols=281 Identities=41% Similarity=0.624 Sum_probs=266.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS---SIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
++++|+|||+|.||.+||..|+.+|++|++||++++.++.+.+++++ .++.+++.|.++..+.+....++..+++.+
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46899999999999999999999999999999999999988887776 367778888888777777788888888886
Q ss_pred ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCC
Q 022434 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD 160 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~ 160 (297)
.+++||+||+|+|++.++|+++++++++.+++++|++||||+++++++++.+.++.|++++||++|+++++++|++.+..
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchH
Q 022434 161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240 (297)
Q Consensus 161 ~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~ 240 (297)
|++++++.+.++++.+|+.|++++|.|||+.||++.++++||++++++|+++++|||++++.++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCccc-----CCccccc
Q 022434 241 VCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKR-----GIGVFDY 284 (297)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~-----g~Gfy~~ 284 (297)
++..+++.+++.+++++|.|+++|++|+++|++|+|+ |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 9999999999999988899999999999999999999 9999998
No 17
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.6e-60 Score=416.10 Aligned_cols=271 Identities=32% Similarity=0.476 Sum_probs=259.2
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC--ccc-cCCC
Q 022434 16 MGSGIAQLGVMDGLDVWLVDTDPD-------ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN--LKD-LHSA 85 (297)
Q Consensus 16 mG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~-~~~a 85 (297)
||++||..++.+|++|+++|++++ .++.+.+++++.+++++++|.+++++.+..+++|+++++ ..+ +++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467788999999999999999999888899999998865 334 8999
Q ss_pred cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHH
Q 022434 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDET 165 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~ 165 (297)
|+||||+||+.++|+++|+++++.+++++|++||||+++++++++.+.+|+|++|+|||+||+.+++|||+.++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhhchHHH
Q 022434 166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIGLDVC 242 (297)
Q Consensus 166 ~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~Gl~~~ 242 (297)
++++.++++.+|+.|++++|.|||++||++.++++|++.++++|++++++||.+++.|+||| +|||+++|.+|++++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022434 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286 (297)
Q Consensus 243 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~ 286 (297)
..+++.+++.+++++|+|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 99999999998887899999999999999999999999999965
No 18
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4e-59 Score=407.79 Aligned_cols=279 Identities=27% Similarity=0.403 Sum_probs=250.2
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.+++|+|||+|.||++||..|+.+|++|++||++++.++.+.+++++.++.+.+.|. .. .....++++++++++ +
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~i~~~~~l~~av 81 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-AP---GASPARLRFVATIEACV 81 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Ch---hhHHhhceecCCHHHHh
Confidence 378999999999999999999999999999999999999999999999998888773 32 234468888888876 8
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~ 162 (297)
++||+||||+||+.++|+++|+++.+.+++++||+||||+++++++++.+.+|+|++++||||||+.+++|||++++.|+
T Consensus 82 ~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~ 161 (321)
T PRK07066 82 ADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTA 161 (321)
T ss_pred cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhhc
Q 022434 163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG 238 (297)
Q Consensus 163 ~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~G 238 (297)
+++++++.+|++.+|++|+++ +|.|||++||++.++++||++++++|++++++||++++.|+|+| +|||+++|.+|
T Consensus 162 ~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~G 241 (321)
T PRK07066 162 PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLAG 241 (321)
T ss_pred HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhcC
Confidence 999999999999999999998 79999999999999999999999999999999999999999998 89999999999
Q ss_pred hHH-HHHHHHHHHhhcCCC--CCCCcHHHHHHHH------cCCCCcccCCcccccCC
Q 022434 239 LDV-CLSIMKVLHTGLGDS--KYAPCPLLVQYVD------AGRLGKKRGIGVFDYRR 286 (297)
Q Consensus 239 l~~-~~~~~~~~~~~~~~~--~~~p~~~l~~~~~------~g~~G~~~g~Gfy~~~~ 286 (297)
+|. ....++++.+.+.++ .+.++.++.++++ ++.+|.++..+||.|.+
T Consensus 242 ld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 242 GDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred hHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 997 344445555554321 2344556666766 68999999999999974
No 19
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.4e-53 Score=374.04 Aligned_cols=280 Identities=37% Similarity=0.584 Sum_probs=250.6
Q ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 3 ~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+++++|+|||+|.||.+||..|+++|++|++||+++++++.+.+.+.+....+.+.+. ......+++.+++.++
T Consensus 2 ~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 2 NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAA 76 (311)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHH
Confidence 4588999999999999999999999999999999999988887766544433322221 0022345667777775
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT 161 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~ 161 (297)
+++||+||+|+|++.+.++.++.++.+.++++++|+|+|++++++++++.+.++.+++++||++||...++++++++..+
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t 156 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKT 156 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCC
Confidence 88999999999999988999999999999999999999999999999998888889999999999998899999999999
Q ss_pred cHHHHHHHHHHHHHcCCeEEEec-cchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhh
Q 022434 162 SDETFRATKALAERFGKTVVCSQ-DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFI 237 (297)
Q Consensus 162 ~~~~~~~~~~ll~~lg~~~i~v~-d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~ 237 (297)
++++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++|+++++++|.+++.++||| +|||+++|.+
T Consensus 157 ~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~ 236 (311)
T PRK06130 157 SPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMN 236 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhh
Confidence 99999999999999999999885 7899999999999999999999999999999999999999999 6999999999
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022434 238 GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP 288 (297)
Q Consensus 238 Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~~ 288 (297)
|++.+..+++.+++.+++ +|.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 237 Gl~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 237 GLDVHLAVASYLYQDLEN-RTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred ccchHHHHHHHHHHhcCC-cCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 999999999999998876 79999999999999999999999999997543
No 20
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.3e-45 Score=325.31 Aligned_cols=266 Identities=28% Similarity=0.400 Sum_probs=249.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
+++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..++.+.+.|.++.++......++..++++++ ++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 56899999999999999999999999999999999999999999999999999998887777777888888889876 79
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcH
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~ 163 (297)
+||+||+|+|++.++++.+++++.+.+++++++.|+||+++++++++.+.++.++++.||++|++..+++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999998899999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhh--
Q 022434 164 ETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFI-- 237 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~-- 237 (297)
+++++++++++.+|++++++ ++.+|+++||++.++++||+.++++|++|+++||.+++.|+|++ +|||++.|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 58899999999999999999999999999999999999999998 7999999987
Q ss_pred -chHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHc
Q 022434 238 -GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDA 270 (297)
Q Consensus 238 -Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 270 (297)
|++........++..+.++.+.|+|++.++++.
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR 275 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence 899999999999999988889999999999884
No 21
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=1.6e-41 Score=275.56 Aligned_cols=179 Identities=47% Similarity=0.693 Sum_probs=161.2
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCc
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSAD 86 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 86 (297)
+|+|||+|.||++||..++.+|++|++||++++.++.+.+++++.++.+++.|.+++++.+....+++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999977999
Q ss_pred EEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHHH
Q 022434 87 IIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETF 166 (297)
Q Consensus 87 ~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~~ 166 (297)
+|||++||+.++|+++|++|++.+++++||+||||++++++++..+.+|+|++|+|||+||+.++++||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEecc
Q 022434 167 RATKALAERFGKTVVCSQD 185 (297)
Q Consensus 167 ~~~~~ll~~lg~~~i~v~d 185 (297)
+++..+++.+|+.|++++|
T Consensus 161 ~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHHHCCCEEEEecC
Confidence 9999999999999999876
No 22
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=1.8e-40 Score=309.11 Aligned_cols=244 Identities=25% Similarity=0.400 Sum_probs=207.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.+++|+|||+|.||++||..|+++|++|++||+++++++.+.+.++.....+. .+... .....+++++++++++ +
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHh
Confidence 46799999999999999999999999999999999988776543332222111 11110 0111245678888865 8
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~ 162 (297)
++||+||+|+||+.++|+++++++.+.++++++|+|+||+++++++++.+.++.+++..||++||+.++++|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---chHHHHHHhhc
Q 022434 163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG 238 (297)
Q Consensus 163 ~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p---~Gp~~~~D~~G 238 (297)
++++++++++++.+|++++++ ++.+||++||++.++++||+.++++|++|+++||.+++.|+|++ +|||+..|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 999999999999999999999 58999999999999999999999999999999999999888775 79999999998
Q ss_pred hHH-HHHHHHHHHh
Q 022434 239 LDV-CLSIMKVLHT 251 (297)
Q Consensus 239 l~~-~~~~~~~~~~ 251 (297)
++. ....++++.+
T Consensus 239 ~~~g~~~~~~~~~~ 252 (495)
T PRK07531 239 GEAGMRHFLAQFGP 252 (495)
T ss_pred cHHHHHHHHHHhch
Confidence 543 3444444433
No 23
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=6.2e-41 Score=286.99 Aligned_cols=265 Identities=31% Similarity=0.431 Sum_probs=247.3
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCcEEEEecccc
Q 022434 16 MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVES 95 (297)
Q Consensus 16 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~e~ 95 (297)
||++||..+..+|++|+++|.+...++....++...+...+.++.++..+.+....+++.+.|++.++++|+||+++.|+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHHHHHHHHHHHH
Q 022434 96 EDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER 175 (297)
Q Consensus 96 ~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~~~~~~~ll~~ 175 (297)
+++|++++.+|++.+++++|+.+|||++++..+++.+.+|++++|.|||.|.+.++++|++.+..|+..++..+.+.-..
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCC
Q 022434 176 FGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD 255 (297)
Q Consensus 176 lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~ 255 (297)
.|+.|+++++.+||.+||++.++.+++.+++.+-++++.++|...+ -+|||+||+.+.|..|+|+..+.-.. +++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t-~fGf~~g~~~L~d~~gfdv~eal~~g----l~~ 235 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLIT-KFGFRVGERALADGVGFDVAEALAVG----LGD 235 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHH-hcCccccHHHHhhccCccHHHHHhhc----cch
Confidence 9999999999999999999999999999999996689999999987 59999999999999999987665544 444
Q ss_pred CCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022434 256 SKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287 (297)
Q Consensus 256 ~~~~p~~~l~~~~~~g~~G~~~g~Gfy~~~~~ 287 (297)
.+.|. +..++++.|+.|+|+|+|||.|++.
T Consensus 236 -~~~~r-~~eel~~~~~~g~kT~kg~y~y~~~ 265 (380)
T KOG1683|consen 236 -EIGPR-IEEELLEKGRAGIKTGKGIYPYARG 265 (380)
T ss_pred -hccch-hHHHHHHHHhhhhhccCcccccccc
Confidence 23332 7899999999999999999999864
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.9e-37 Score=244.75 Aligned_cols=232 Identities=29% Similarity=0.432 Sum_probs=215.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-VGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~ 82 (297)
..||+|+|.|..|+++|..|+..||+|.+||+.+++++.+.+.+++.+.++.++|.+... .++....+|+.++++++ +
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 679999999999999999999999999999999999999999999999999888765432 45566778888999988 8
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~ 162 (297)
++|=.|-||+||++++|+.++++|+..+.+.+|+.|+||++.++.+.+.+.+..+++-.|+.|||...|++|+++.+-|+
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTs 162 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTS 162 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc---hHHHHHHh
Q 022434 163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPM---GPLQLADF 236 (297)
Q Consensus 163 ~~~~~~~~~ll~~lg~~~i~v-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~---Gp~~~~D~ 236 (297)
|+++++.+++++.+|.+|+.. ++.-||..||+..+++||--++++.|+.+..|+|.+|..|+|... ||++.+.+
T Consensus 163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HL 240 (313)
T KOG2305|consen 163 PDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHL 240 (313)
T ss_pred hhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhc
Confidence 999999999999999998855 678899999999999999999999999999999999999999864 99999875
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.98 E-value=4.2e-31 Score=245.87 Aligned_cols=168 Identities=27% Similarity=0.384 Sum_probs=155.6
Q ss_pred hcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 109 ITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 109 ~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
.+.+++++.++.++.+.+..+....+|.+++|+|||+|++.++++||+.+..|++++++.+.++++.+|+.|++++|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 45567788877777666667666678899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHH
Q 022434 189 FIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYV 268 (297)
Q Consensus 189 ~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~ 268 (297)
|++||++.+++|||++++++|+++++|||.+++.|+|||+|||+|+|.+|++.++.+++.+++.+++++|+|+++|++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987999999999999
Q ss_pred HcCCCCcccCCcccc
Q 022434 269 DAGRLGKKRGIGVFD 283 (297)
Q Consensus 269 ~~g~~G~~~g~Gfy~ 283 (297)
++| +.||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 986 46765
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.96 E-value=1.2e-29 Score=185.83 Aligned_cols=97 Identities=51% Similarity=0.908 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHH
Q 022434 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQY 267 (297)
Q Consensus 188 g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~ 267 (297)
||++||++.++++||++++++|++++++||.+++.++|||+|||+++|.+|++++..+++.+++.++++.|+|++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999778999999999
Q ss_pred HHcCCCCcccCCccccc
Q 022434 268 VDAGRLGKKRGIGVFDY 284 (297)
Q Consensus 268 ~~~g~~G~~~g~Gfy~~ 284 (297)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.94 E-value=6.9e-26 Score=210.45 Aligned_cols=122 Identities=31% Similarity=0.499 Sum_probs=117.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCchH
Q 022434 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGP 230 (297)
Q Consensus 151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~p~Gp 230 (297)
..+||+++..|++++++.+.++++.+|+.|++++|.|||++||++.+++|||+.++++|+++++|||.+++.|+|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCC
Q 022434 231 LQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGR 272 (297)
Q Consensus 231 ~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~ 272 (297)
|+|+|.+|+|.+..+++.+++.+++++|+|+++|++|+..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 999999999999999999999999878999999999999864
No 28
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.93 E-value=4.2e-24 Score=182.43 Aligned_cols=189 Identities=23% Similarity=0.323 Sum_probs=147.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc-cccC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL-KDLH 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 83 (297)
++|+|||+|.||.+||.+|.++||+|++|||++++ .+.+ .+.|. ....++ +.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~-----------~~~Ga-------------~~a~s~~eaa~ 56 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL-----------AAAGA-------------TVAASPAEAAA 56 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH-----------HHcCC-------------cccCCHHHHHH
Confidence 48999999999999999999999999999999998 4333 45565 345555 4489
Q ss_pred CCcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCCCc-------
Q 022434 84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLMK------- 151 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~~------- 151 (297)
++|+||.|+|++.++...++. .+.+.++++++++. .||+++ .++++.+. -.|.+|++.|-..+
T Consensus 57 ~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~G 131 (286)
T COG2084 57 EADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAG 131 (286)
T ss_pred hCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhC
Confidence 999999999999998888875 36666777777663 334443 35665542 35678888772221
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434 152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLG 223 (297)
Q Consensus 152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g 223 (297)
.+.|+.| ++++.+++++++|+.+|++++++++. .| .++|+++.. .+.||+.+.++.+++++.+..+++.+
T Consensus 132 tLtimvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~ 209 (286)
T COG2084 132 TLTIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGG 209 (286)
T ss_pred ceEEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 3567776 89999999999999999999999875 22 488988764 46799999999999999999999876
Q ss_pred cC
Q 022434 224 TN 225 (297)
Q Consensus 224 ~g 225 (297)
.+
T Consensus 210 ~~ 211 (286)
T COG2084 210 AA 211 (286)
T ss_pred cc
Confidence 43
No 29
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.88 E-value=3.8e-21 Score=168.58 Aligned_cols=188 Identities=21% Similarity=0.347 Sum_probs=140.6
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHSA 85 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a 85 (297)
+|+|||+|.||.+||..|+++||+|++||+++++++.+ .+.|.. ..++.++ +++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~~-------------~~~~~~~~~~~a 56 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL-----------LAAGAV-------------TAETARQVTEQA 56 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCCc-------------ccCCHHHHHhcC
Confidence 59999999999999999999999999999999887665 334431 2344444 7899
Q ss_pred cEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCC-------CceE
Q 022434 86 DIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPL-------MKLV 153 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~-------~~~v 153 (297)
|+||+|+|++..++..++. .+...++++++|+ ++|+.++ .++.+.+.. .++||+++|-. .+.+
T Consensus 57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~----~g~~~~~~pv~g~~~~a~~g~l 131 (291)
T TIGR01505 57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKE----KGIDYLDAPVSGGEIGAIEGTL 131 (291)
T ss_pred CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCCEEecCCCCCHHHHhcCCE
Confidence 9999999998877766553 2555667777776 3444444 356655532 24555554421 1235
Q ss_pred EEecCCCCcHHHHHHHHHHHHHcCCeEEEecc-chh---hhHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022434 154 EVIRGADTSDETFRATKALAERFGKTVVCSQD-YAG---FIVNRILMPM----INEAFFTLYTGVATKEDIDAGMKLGTN 225 (297)
Q Consensus 154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d-~~g---~i~nri~~~~----~~Ea~~l~~~g~~~~~~id~a~~~g~g 225 (297)
.++.+ ++++++++++++++.+|++++++++ .++ +++|+++... ++|++.++++.+++++++..++..+.+
T Consensus 132 ~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 132 SIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 66666 6899999999999999999999975 445 4888887654 899999999988999999999986654
No 30
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.88 E-value=2.4e-21 Score=162.70 Aligned_cols=191 Identities=20% Similarity=0.296 Sum_probs=147.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.++||+||+|.||.+|+.+|.++||.|++|||+.++.+.+ .+.|. ++.+++.+ ++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga-------------~v~~sPaeVae 90 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGA-------------RVANSPAEVAE 90 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhch-------------hhhCCHHHHHh
Confidence 5789999999999999999999999999999999988776 67776 35666766 88
Q ss_pred CCcEEEEeccccHHHHHHHHHH---HHhhcCCCeE-EEecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCC--------
Q 022434 84 SADIIVEAIVESEDVKKKLFSE---LDKITKASAI-LASNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------- 150 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~---l~~~~~~~~i-i~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------- 150 (297)
+||+||.++|+..+++..++.. +....+.++. |.++|+.+.. .+|++.... .+..|++.| +.
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~----~~~~~vDAP-VSGg~~~A~~ 165 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN----KGGRFVDAP-VSGGVKGAEE 165 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh----CCCeEEecc-ccCCchhhhc
Confidence 9999999999999988888775 3333344444 5555555544 577776642 244555555 22
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhh
Q 022434 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILMPM----INEAFFTLYTGVATKEDIDAGMKL 222 (297)
Q Consensus 151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~~~----~~Ea~~l~~~g~~~~~~id~a~~~ 222 (297)
..+.++.+ ++++.++++.++++.+|+++++++.. .| .++|+++... +.|++.+.+.-+.|+..+-.++..
T Consensus 166 G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~ 243 (327)
T KOG0409|consen 166 GTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNT 243 (327)
T ss_pred CeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 23556666 89999999999999999999998653 22 5889887643 679999999888999998888887
Q ss_pred ccCC
Q 022434 223 GTNQ 226 (297)
Q Consensus 223 g~g~ 226 (297)
|..|
T Consensus 244 G~~~ 247 (327)
T KOG0409|consen 244 GRCW 247 (327)
T ss_pred CCcc
Confidence 6654
No 31
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.87 E-value=2.6e-20 Score=163.75 Aligned_cols=189 Identities=20% Similarity=0.325 Sum_probs=141.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.++|..|++.|++|++||+++++.+.+ .+.|. ...+++++ +++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~ 58 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEV-----------IAAGA-------------ETASTAKAVAEQ 58 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCC-------------eecCCHHHHHhc
Confidence 589999999999999999999999999999999877654 33332 34556655 789
Q ss_pred CcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCCC-------ce
Q 022434 85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------KL 152 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------~~ 152 (297)
||+||+|+|++..++..++. .+.+.++++++|+ ++|+..+ .++++.+.. .+.||+++|-.. +.
T Consensus 59 ~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~----~g~~~~d~pv~g~~~~a~~g~ 133 (296)
T PRK11559 59 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKA----KGIEMLDAPVSGGEPKAIDGT 133 (296)
T ss_pred CCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEcCCCCCHHHHhhCc
Confidence 99999999998876665543 3566677788777 4444444 355555432 256676665221 23
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc-chhh---hHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022434 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLGT 224 (297)
Q Consensus 153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d-~~g~---i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g~ 224 (297)
+.++.+ ++++.++.++++++.+|+.++++++ .+|. ++|+++.. +++|++.++++.++++++++.+++.+.
T Consensus 134 l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~ 211 (296)
T PRK11559 134 LSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211 (296)
T ss_pred EEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence 566666 6899999999999999999998865 3554 57776654 589999999998899999999998665
Q ss_pred C
Q 022434 225 N 225 (297)
Q Consensus 225 g 225 (297)
+
T Consensus 212 ~ 212 (296)
T PRK11559 212 A 212 (296)
T ss_pred c
Confidence 4
No 32
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.82 E-value=4.9e-18 Score=147.86 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=117.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
++|+|||+|.||.++|..|.++|++|++||++++.++.+ .+.|... ...++.+.+++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERA-----------IERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHCCCcc-----------cccCCHhHhcCC
Confidence 379999999999999999999999999999999877665 3444321 123444457899
Q ss_pred cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCC------------CceE
Q 022434 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL------------MKLV 153 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~------------~~~v 153 (297)
|+||+|+|.+.. ..+++++.+.++++++|. +++++....+........++++.||+.++.. ....
T Consensus 59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIGLL--LPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 999999997654 457788888888888775 5555655544444333457999999875531 1234
Q ss_pred EEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434 154 EVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d 185 (297)
-++++..++++.++.++++++.+|.++++++.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 57788889999999999999999999988754
No 33
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.80 E-value=3.3e-18 Score=150.09 Aligned_cols=187 Identities=18% Similarity=0.226 Sum_probs=132.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.+||..|+++||+|++||+++++.+.+ .+.|. ....+..+ +++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~-----------~~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDAL-----------VDKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHcCC-------------cccCCHHHHHhc
Confidence 489999999999999999999999999999999887765 33343 23445544 789
Q ss_pred CcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCCC-------ce
Q 022434 85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------KL 152 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------~~ 152 (297)
||+||.|+|++..++..+.. .+.+.++++++++ ++|+.++ .++++.+.. .|.+|++.|-.. +.
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~----~g~~~ldapV~g~~~~a~~g~ 132 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQA----KGFSMMDVPVGRTSDNAITGT 132 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEccCCCCHHHHHhCc
Confidence 99999999998766655442 2445566677665 4455544 355554422 133444443111 12
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG 223 (297)
Q Consensus 153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g 223 (297)
..++.| ++++++++++++|+.+|++++++++. .| .++|+++. ..+.|++.++++.+++++.+-.++..+
T Consensus 133 l~~~~g--g~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~ 209 (296)
T PRK15461 133 LLLLAG--GTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGT 209 (296)
T ss_pred EEEEEC--CCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 335555 79999999999999999999998763 12 36666543 457899999999889999877777644
No 34
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.79 E-value=4.4e-18 Score=156.94 Aligned_cols=192 Identities=14% Similarity=0.198 Sum_probs=131.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
..++|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+.. ...|. ..+....++++ +
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga----------~~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGN----------LPLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCC----------cccccCCCHHHHH
Confidence 467899999999999999999999999999999999887763210 00132 01224455555 4
Q ss_pred C---CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCCc------
Q 022434 83 H---SADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK------ 151 (297)
Q Consensus 83 ~---~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~------ 151 (297)
+ .+|+||.|+|++..+.. ++..+.+.+.++.||+ ++|+.+.. .++++.+. -.|+||++.| +++
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~----~~Gi~fldap-VSGG~~gA~ 141 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA----EKGLLYLGMG-VSGGEEGAR 141 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEeCC-CcCCHHHhc
Confidence 3 49999999999887654 4466666666555554 44443333 34555442 1245665544 211
Q ss_pred -eEEEecCCCCcHHHHHHHHHHHHHcCCe------EEEeccc-hh---hhHHHHHH----HHHHHHHHHHHc-CCCCHHH
Q 022434 152 -LVEVIRGADTSDETFRATKALAERFGKT------VVCSQDY-AG---FIVNRILM----PMINEAFFTLYT-GVATKED 215 (297)
Q Consensus 152 -~vei~~~~~~~~~~~~~~~~ll~~lg~~------~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~-g~~~~~~ 215 (297)
...++.| ++++++++++++|+.++.+ ++++++. .| .++|+.+. ..+.|++.++++ .+.++++
T Consensus 142 ~G~~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~ 219 (493)
T PLN02350 142 NGPSLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEE 219 (493)
T ss_pred CCCeEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Confidence 1246666 8999999999999999964 7888763 22 25555543 467899999988 3789999
Q ss_pred HHHHH
Q 022434 216 IDAGM 220 (297)
Q Consensus 216 id~a~ 220 (297)
+-.++
T Consensus 220 l~~vf 224 (493)
T PLN02350 220 LAEVF 224 (493)
T ss_pred HHHHH
Confidence 88874
No 35
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.79 E-value=1.5e-19 Score=144.80 Aligned_cols=149 Identities=21% Similarity=0.347 Sum_probs=101.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
|++|+|||+|.||++||.+|+++||+|++|||++++.+++ .+.|. ...+++++ ++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~-----------~~~g~-------------~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEAL-----------AEAGA-------------EVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHH-----------HHTTE-------------EEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhh-----------HHhhh-------------hhhhhhhhHhh
Confidence 4689999999999999999999999999999999988776 44443 57778777 78
Q ss_pred CCcEEEEeccccHHHHHHHHHH--HHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCC-------ce
Q 022434 84 SADIIVEAIVESEDVKKKLFSE--LDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KL 152 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~ 152 (297)
+||+||.|+|++.+++. ++.. +.+.++++.+++ ++|+++.. .++++.+.. .|.+|++.|-.. +.
T Consensus 57 ~~dvvi~~v~~~~~v~~-v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g~ 131 (163)
T PF03446_consen 57 QADVVILCVPDDDAVEA-VLFGENILAGLRPGKIIIDMSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEGT 131 (163)
T ss_dssp HBSEEEE-SSSHHHHHH-HHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHTT
T ss_pred cccceEeecccchhhhh-hhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhh----ccceeeeeeeecccccccccc
Confidence 89999999999887554 4444 666666776665 33333332 355555422 134555544111 12
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcCCeEEE-ec
Q 022434 153 VEVIRGADTSDETFRATKALAERFGKTVVC-SQ 184 (297)
Q Consensus 153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~-v~ 184 (297)
+.++.+ ++++.+++++++|+.++.++++ ++
T Consensus 132 l~~~~g--G~~~~~~~~~~~l~~~~~~v~~~~G 162 (163)
T PF03446_consen 132 LTIMVG--GDEEAFERVRPLLEAMGKNVYHYVG 162 (163)
T ss_dssp EEEEEE--S-HHHHHHHHHHHHHHEEEEEEE-E
T ss_pred eEEEcc--CCHHHHHHHHHHHHHHhCCceeeeC
Confidence 345555 7899999999999999999884 35
No 36
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.78 E-value=6.4e-18 Score=147.86 Aligned_cols=185 Identities=22% Similarity=0.247 Sum_probs=133.3
Q ss_pred EECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCCCcEE
Q 022434 10 VVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHSADII 88 (297)
Q Consensus 10 viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~aD~V 88 (297)
|||+|.||.+||..|+++||+|++||+++++.+.+ .+.|. ..++++.+ +++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEA-----------VAAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHH-----------HHcCC-------------eecCCHHHHHhcCCEE
Confidence 68999999999999999999999999999887665 33343 34555555 7899999
Q ss_pred EEeccccHHHHHHHH--HHHHhhcCCCeEEEecCCCCcHH---HHhhhcCCCCeEEEeecCCCCCCC-------ceEEEe
Q 022434 89 VEAIVESEDVKKKLF--SELDKITKASAILASNTSSISIT---RLASATSRPCQVIGMHFMNPPPLM-------KLVEVI 156 (297)
Q Consensus 89 i~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~l~~~~~~~~~~~g~h~~~p~~~~-------~~vei~ 156 (297)
|.|+|.+..+...++ ..+.+.++++++++ ++|+++++ ++.+.+.. .|.+|.+.|-.. +.+.++
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vi-d~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~ 131 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLI-DCSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM 131 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence 999998776544333 45666667777665 34455553 44444321 245566655211 123444
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCeEEEecc-chh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022434 157 RGADTSDETFRATKALAERFGKTVVCSQD-YAG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTN 225 (297)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~lg~~~i~v~d-~~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g 225 (297)
.+ ++++.+++++++|+.+|++++++++ ..| .++|+++. ..++|++.++++.+++++++..++..+.|
T Consensus 132 ~g--g~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 132 VG--GVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EC--CCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 44 6889999999999999999999986 333 37777654 35789999999988999999998886654
No 37
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.78 E-value=8.6e-18 Score=146.88 Aligned_cols=190 Identities=20% Similarity=0.264 Sum_probs=129.3
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHSA 85 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a 85 (297)
+|+|||+|.||.+||..|.++||+|++||+++. .+.+ .+.|. ....+..+ ++.|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~-------------~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA-------------VSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC-------------eecCCHHHHHhcC
Confidence 799999999999999999999999999999874 2322 33443 23445544 7899
Q ss_pred cEEEEeccccHHHHHHHHHH--HHhhcCCCeEEEecCCCCcH---HHHhhhcC-CCCeEEEeecCCC-CC--CCceEEEe
Q 022434 86 DIIVEAIVESEDVKKKLFSE--LDKITKASAILASNTSSISI---TRLASATS-RPCQVIGMHFMNP-PP--LMKLVEVI 156 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-~~~~~~g~h~~~p-~~--~~~~vei~ 156 (297)
|+||.|+|++..++..++.+ +...+.++.+++ ++|++++ .++++.+. +..+++.. |+.. +. ..+.+.++
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~ 134 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIM 134 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEE
Confidence 99999999987766655442 344455566555 3344443 34555442 22334442 2221 11 01123444
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022434 157 RGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTN 225 (297)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g 225 (297)
.+ ++++.+++++++|+.+|++++++++. .| .++|+++. ..+.|++.+.++.++|++.+-.++..+.+
T Consensus 135 ~g--G~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~ 209 (292)
T PRK15059 135 VG--GDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA 209 (292)
T ss_pred Ec--CCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence 44 78999999999999999999999874 22 36677664 35789999999988899988777765553
No 38
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.77 E-value=1.1e-16 Score=138.61 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=116.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+.+ .+.|. ...++..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~-----------~~~g~-------------~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVF-----------QSLGV-------------KTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHH-----------HHcCC-------------EEeCChH
Confidence 479999999999999999999998 89999 9998876554 33343 3455555
Q ss_pred c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE-EecC
Q 022434 81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRG 158 (297)
Q Consensus 81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-i~~~ 158 (297)
+ +++||+||.|++. .. ..+++.++.+.++++++|++.+++++.+.+.+..... +++..+|..|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~~-~~-~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVKP-QV-VKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEECc-HH-HHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 5 7899999999963 33 5677778877777888888888999998888766543 677777766654444433 4556
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 159 ADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 159 ~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
..++++.++.++++|+.+|. ++++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~ 158 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVD 158 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence 67899999999999999999 77764
No 39
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.76 E-value=4.4e-17 Score=143.21 Aligned_cols=184 Identities=17% Similarity=0.192 Sum_probs=129.1
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC-
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS- 84 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~- 84 (297)
+|+|||+|.||.+||..|+++|++|++||+++++.+.+ .+.|. ....++++ +++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~-----------~~~g~-------------~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVA-----------GKLGI-------------TARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-----------HHCCC-------------eecCCHHHHHHhC
Confidence 79999999999999999999999999999999877655 33343 34555555 433
Q ss_pred --CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCc-HHHHhhhcCCCCeEEEeecCCCCCCCc------eEE
Q 022434 85 --ADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSIS-ITRLASATSRPCQVIGMHFMNPPPLMK------LVE 154 (297)
Q Consensus 85 --aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~-~~~l~~~~~~~~~~~g~h~~~p~~~~~------~ve 154 (297)
+|+||.|+|++..+ ..++..+.+.++++.+++ ++|++.. ..++.+.+.. .+.+|++.|-..+ ...
T Consensus 58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence 69999999988654 345566766666666655 3333332 2455555422 2345655441111 112
Q ss_pred EecCCCCcHHHHHHHHHHHHHcCC---eEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCC--CCHHHHHHHH
Q 022434 155 VIRGADTSDETFRATKALAERFGK---TVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGV--ATKEDIDAGM 220 (297)
Q Consensus 155 i~~~~~~~~~~~~~~~~ll~~lg~---~~i~v~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~--~~~~~id~a~ 220 (297)
++.+ ++++++++++++++.+|. +++++++ +| .++|+++. ..+.||+.++++.+ .+++++-.++
T Consensus 133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 133 LMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 4544 799999999999999997 6888876 33 36666554 45789999999877 7899988888
Q ss_pred hh
Q 022434 221 KL 222 (297)
Q Consensus 221 ~~ 222 (297)
+.
T Consensus 210 ~~ 211 (299)
T PRK12490 210 RN 211 (299)
T ss_pred cC
Confidence 74
No 40
>PLN02858 fructose-bisphosphate aldolase
Probab=99.75 E-value=3.9e-17 Score=166.99 Aligned_cols=191 Identities=14% Similarity=0.124 Sum_probs=140.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
..++|||||+|.||.+||.+|+++||+|++|||++++.+.+ .+.|. ...+++.+ +
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l-----------~~~Ga-------------~~~~s~~e~a 58 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKF-----------CELGG-------------HRCDSPAEAA 58 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHcCC-------------eecCCHHHHH
Confidence 45789999999999999999999999999999999988776 55564 35566666 7
Q ss_pred CCCcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEE--eecCCCCCCC-----
Q 022434 83 HSADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIG--MHFMNPPPLM----- 150 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g--~h~~~p~~~~----- 150 (297)
++||+||.|+|++..++..++. .+.+.++++.+++ .+||+++ .++++.+.. .| .+|++.|-..
T Consensus 59 ~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A 133 (1378)
T PLN02858 59 KDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDL 133 (1378)
T ss_pred hcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHH
Confidence 7899999999999887766653 3555555666554 3344443 356555432 23 4566655211
Q ss_pred --ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe-ccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHH
Q 022434 151 --KLVEVIRGADTSDETFRATKALAERFGKTVVCS-QDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAG 219 (297)
Q Consensus 151 --~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v-~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a 219 (297)
+.+.++.| ++++++++++++|+.+|++++++ ++. .| .++|+++. ..+.||+.+.++.+++++.+-.+
T Consensus 134 ~~G~L~imvG--G~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 134 LNGKLMIIAS--GRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred hcCCeEEEEc--CCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 12445555 79999999999999999998865 542 22 37777764 35789999999988999999888
Q ss_pred HhhccC
Q 022434 220 MKLGTN 225 (297)
Q Consensus 220 ~~~g~g 225 (297)
+..+.|
T Consensus 212 l~~s~g 217 (1378)
T PLN02858 212 ISNAAG 217 (1378)
T ss_pred HhcCCc
Confidence 887655
No 41
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.75 E-value=1.4e-16 Score=140.28 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=130.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC-
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH- 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 83 (297)
++|+|||+|.||.+||..|+++|++|++||+++++.+.+ .+.|. ...+++++ ++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~ 56 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEAL-----------AEEGA-------------TGADSLEELVAK 56 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHCCC-------------eecCCHHHHHhh
Confidence 379999999999999999999999999999999887665 34443 34555554 33
Q ss_pred --CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec-CCCCcH-HHHhhhcCCCCeEEEeecCCCCCCCc------eE
Q 022434 84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASN-TSSISI-TRLASATSRPCQVIGMHFMNPPPLMK------LV 153 (297)
Q Consensus 84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~-ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~------~v 153 (297)
++|+||.++|.+..+ ..++..+...++++.+++.. |+.... .++++.+.. .|.+|++.|-... ..
T Consensus 57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~ 131 (301)
T PRK09599 57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY 131 (301)
T ss_pred cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC
Confidence 369999999987554 34556666667666666533 333322 345544421 2455555441111 12
Q ss_pred EEecCCCCcHHHHHHHHHHHHHcCC----eEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHc--CCCCHHHHHHH
Q 022434 154 EVIRGADTSDETFRATKALAERFGK----TVVCSQDY-AG---FIVNRILM----PMINEAFFTLYT--GVATKEDIDAG 219 (297)
Q Consensus 154 ei~~~~~~~~~~~~~~~~ll~~lg~----~~i~v~d~-~g---~i~nri~~----~~~~Ea~~l~~~--g~~~~~~id~a 219 (297)
.++.+ ++++++++++++++.++. +++++++. .| .++|+.+. ..+.|++.++++ .+++++++-.+
T Consensus 132 ~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 132 CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555 899999999999999998 78888773 12 25555443 346799999987 77899999999
Q ss_pred Hhhc
Q 022434 220 MKLG 223 (297)
Q Consensus 220 ~~~g 223 (297)
++.|
T Consensus 210 ~~~~ 213 (301)
T PRK09599 210 WRRG 213 (301)
T ss_pred HhCC
Confidence 8865
No 42
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.72 E-value=9.3e-16 Score=134.70 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=128.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc----c
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK----D 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~ 81 (297)
|+|+|||+|.||.+||..|+++||+|.+|||++++++.+ .+.|.. ...+.+ .
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l-----------~~~g~~-------------~~~s~~~~~~~ 56 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAM-----------KEDRTT-------------GVANLRELSQR 56 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHcCCc-------------ccCCHHHHHhh
Confidence 379999999999999999999999999999999987766 333321 122322 2
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcC-CCCeEEEeecCCCCC-CCceEEEec
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATS-RPCQVIGMHFMNPPP-LMKLVEVIR 157 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~~~~g~h~~~p~~-~~~~vei~~ 157 (297)
+..+|+||.|+|.+ . ...++.++.+.++++.+|+..+++.+ ..++...+. ...+++..+....+. .....-++.
T Consensus 57 ~~~~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~ 134 (298)
T TIGR00872 57 LSAPRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMI 134 (298)
T ss_pred cCCCCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeee
Confidence 45789999999987 4 55677888888877777665444432 234434332 222333333222211 001123444
Q ss_pred CCCCcHHHHHHHHHHHHHcCC---eEEEeccc-hh---hhHHHHH-H---HHHHHHHHHHHcC--CCCHHHHHHHHhhcc
Q 022434 158 GADTSDETFRATKALAERFGK---TVVCSQDY-AG---FIVNRIL-M---PMINEAFFTLYTG--VATKEDIDAGMKLGT 224 (297)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~lg~---~~i~v~d~-~g---~i~nri~-~---~~~~Ea~~l~~~g--~~~~~~id~a~~~g~ 224 (297)
+ ++++.++.++++|+.++. ..+++++. .+ .++++.+ . ..+.|++.++++. ..+++++-.+++.|.
T Consensus 135 g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 135 G--GDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred C--CCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence 4 799999999999999986 46788763 22 2444433 3 4577999999984 468999999988764
No 43
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.72 E-value=6.1e-16 Score=141.87 Aligned_cols=204 Identities=18% Similarity=0.173 Sum_probs=133.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+|||+|.||.++|..|+++||+|++||+++++++.+.+.. +..++.++.+. ...+++++++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYED 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHH
Confidence 3799999999999999999999999999999999887653211 00011111100 01234567777775
Q ss_pred -cCCCcEEEEeccccHH--------HHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhh-hcCC------CC-eEEEe
Q 022434 82 -LHSADIIVEAIVESED--------VKKKLFSELDKITKASAILASNTSSISI---TRLAS-ATSR------PC-QVIGM 141 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~-~~~~------~~-~~~g~ 141 (297)
+++||+||.|+|++.. ....+.+.+.+.++++++|+. +|++++ .++.. .+.. .. -.+..
T Consensus 73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~ 151 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAY 151 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEE
Confidence 8899999999998642 234556677777777776653 344433 23432 2111 01 11222
Q ss_pred ecCCCCCCCce---------EEEecCCCCcHHHHHHHHHHHHHcC-CeEEEeccchh----hhHHHHH----HHHHHHHH
Q 022434 142 HFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFG-KTVVCSQDYAG----FIVNRIL----MPMINEAF 203 (297)
Q Consensus 142 h~~~p~~~~~~---------vei~~~~~~~~~~~~~~~~ll~~lg-~~~i~v~d~~g----~i~nri~----~~~~~Ea~ 203 (297)
+|....+. ..++.| ++++.+++++++++.++ ..++++++... .++++.+ .+++||+.
T Consensus 152 ---~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 226 (411)
T TIGR03026 152 ---NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELA 226 (411)
T ss_pred ---CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23222111 145666 68999999999999998 56777765321 3555555 57899999
Q ss_pred HHHHcCCCCHHHHHHHHhhc
Q 022434 204 FTLYTGVATKEDIDAGMKLG 223 (297)
Q Consensus 204 ~l~~~g~~~~~~id~a~~~g 223 (297)
.++++-++|++++-.++..+
T Consensus 227 ~la~~~GiD~~~v~~~~~~~ 246 (411)
T TIGR03026 227 RICEALGIDVYEVIEAAGTD 246 (411)
T ss_pred HHHHHhCCCHHHHHHHhCCC
Confidence 99999889999988887643
No 44
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.71 E-value=9.6e-16 Score=140.24 Aligned_cols=200 Identities=15% Similarity=0.148 Sum_probs=128.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCCcEEe
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAVGTDAPRRLRCT 76 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 76 (297)
+++|+|||+|.||.++|..|+++||+|++||+++++++..... +...+.+.++.| ++.++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g------------~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG------------YLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC------------ceeee
Confidence 5799999999999999999999999999999999988764211 111122222233 23444
Q ss_pred cCccccCCCcEEEEeccccH--------HHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCC--CC-eE-----
Q 022434 77 SNLKDLHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSR--PC-QV----- 138 (297)
Q Consensus 77 ~~~~~~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~--~~-~~----- 138 (297)
++ +++||+||.|+|.+. .....+.+.+.+.++++++|+ .+|..+.. .++...+.. +. ++
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g 147 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAG 147 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCccccccc
Confidence 43 348999999999852 334456677888888877665 33333333 334332211 00 00
Q ss_pred --EEeec-CCCCCCCc---------eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccch-h---hhHHHHH----HHH
Q 022434 139 --IGMHF-MNPPPLMK---------LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYA-G---FIVNRIL----MPM 198 (297)
Q Consensus 139 --~g~h~-~~p~~~~~---------~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~-g---~i~nri~----~~~ 198 (297)
...++ ++|..+.+ ..-++.+ .+++.+++++++++.++..++++++.. + .++++.+ .++
T Consensus 148 ~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 148 EQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred CCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 23322222 1134433 389999999999999998777776521 1 3555544 368
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHh
Q 022434 199 INEAFFTLYTGVATKEDIDAGMK 221 (297)
Q Consensus 199 ~~Ea~~l~~~g~~~~~~id~a~~ 221 (297)
+||++.++++-++|++++-.++.
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhc
Confidence 99999999998899999877765
No 45
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.71 E-value=8.2e-16 Score=141.77 Aligned_cols=190 Identities=14% Similarity=0.204 Sum_probs=132.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC-
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH- 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 83 (297)
.+|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+.. ...|. .+..++++++ ++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 4799999999999999999999999999999999887763211 01121 1235566655 43
Q ss_pred --CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCCCCc-------e
Q 022434 84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK-------L 152 (297)
Q Consensus 84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~-------~ 152 (297)
.+|+||.+++....+ ..++.++.+.+.++.||+..+++.+. .+..+.+. -.|+||++.| +++ .
T Consensus 64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldap-VSGG~~gA~~G 137 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMG-VSGGEEGARYG 137 (470)
T ss_pred CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCC-CCCCHHHHhcC
Confidence 589999999887664 45667788878877777655544433 23333331 2356776655 222 1
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcCCe------EEEeccc-hh---hhHHHHH-H---HHHHHHHHHHH-cCCCCHHHHH
Q 022434 153 VEVIRGADTSDETFRATKALAERFGKT------VVCSQDY-AG---FIVNRIL-M---PMINEAFFTLY-TGVATKEDID 217 (297)
Q Consensus 153 vei~~~~~~~~~~~~~~~~ll~~lg~~------~i~v~d~-~g---~i~nri~-~---~~~~Ea~~l~~-~g~~~~~~id 217 (297)
..++.| ++++++++++++|+.++.+ +.++++. .| .++++.+ . ..+.|++.+++ ..+.+++++-
T Consensus 138 ~~lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~ 215 (470)
T PTZ00142 138 PSLMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELS 215 (470)
T ss_pred CEEEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 246666 8999999999999999987 6778763 23 2444433 3 46789999997 5668898887
Q ss_pred HHHh
Q 022434 218 AGMK 221 (297)
Q Consensus 218 ~a~~ 221 (297)
.++.
T Consensus 216 ~v~~ 219 (470)
T PTZ00142 216 EVFN 219 (470)
T ss_pred HHHH
Confidence 7763
No 46
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.70 E-value=9.2e-15 Score=127.10 Aligned_cols=151 Identities=20% Similarity=0.259 Sum_probs=107.3
Q ss_pred EEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
+|+|||+|.||.++|..|.++|+ +|++||+++++++.+ .+.|... ...+.+++.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~-----------~~~g~~~------------~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKA-----------LELGLVD------------EIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH-----------HHCCCCc------------ccCCHHHHhc
Confidence 79999999999999999999996 788999999876654 3344321 1234444556
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc-HH-HHhhhcCCCCeEEEeecCCC-----C-C------CC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-IT-RLASATSRPCQVIGMHFMNP-----P-P------LM 150 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~-~l~~~~~~~~~~~g~h~~~p-----~-~------~~ 150 (297)
||+||.|+|.+. ..+++.++.+ ++++++|++.+|+.. +. .+.+. .+.++++.||+.+ | . ..
T Consensus 59 aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 59 CDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred CCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 999999999765 4457777877 777887775444322 22 22222 2357999999843 2 1 11
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d 185 (297)
..+.+++...++++.++.+.++++.+|.+++++.+
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 23456676778899999999999999999998854
No 47
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.70 E-value=9.5e-16 Score=138.66 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=122.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
|+|+|||+|.||.++|..|+. ||+|++||+++++++.+.+... ..++.+... ...+++.+.+.++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNE 69 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhh
Confidence 379999999999999988875 9999999999999988755321 122222211 1234555565554
Q ss_pred -cCCCcEEEEeccccHHH---------HHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCC
Q 022434 82 -LHSADIIVEAIVESEDV---------KKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPL 149 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~---------k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~ 149 (297)
+++||+||+|+|++.+. ...+.+.+.. .+++.+++ .+|..+.. +++...+.. .++.| +|..+
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~----~~v~~-~PE~l 143 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT----ENIIF-SPEFL 143 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc----CcEEE-Ccccc
Confidence 78999999999987432 2344566666 45555554 44433333 355544321 12222 44433
Q ss_pred Cce---------EEEecCCCCcHHHHHHHHHHHHH--cCCeEE-Eeccc-hh---hhHHHHH----HHHHHHHHHHHHcC
Q 022434 150 MKL---------VEVIRGADTSDETFRATKALAER--FGKTVV-CSQDY-AG---FIVNRIL----MPMINEAFFTLYTG 209 (297)
Q Consensus 150 ~~~---------vei~~~~~~~~~~~~~~~~ll~~--lg~~~i-~v~d~-~g---~i~nri~----~~~~~Ea~~l~~~g 209 (297)
.+. -.++.| ++++..+++.+++.. ++..+. ++.+. .+ .++++.+ .+++||+..++++-
T Consensus 144 ~~G~a~~d~~~p~rvv~G--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~ 221 (388)
T PRK15057 144 REGKALYDNLHPSRIVIG--ERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESL 221 (388)
T ss_pred cCCcccccccCCCEEEEE--cCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 135555 345667778887754 454333 45442 12 2455444 36899999999998
Q ss_pred CCCHHHHHHHHh
Q 022434 210 VATKEDIDAGMK 221 (297)
Q Consensus 210 ~~~~~~id~a~~ 221 (297)
++|.+++-.++.
T Consensus 222 GiD~~eV~~a~~ 233 (388)
T PRK15057 222 GLNTRQIIEGVC 233 (388)
T ss_pred CcCHHHHHHHhc
Confidence 899999888874
No 48
>PLN02858 fructose-bisphosphate aldolase
Probab=99.70 E-value=6e-16 Score=158.39 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=135.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.++|+|||+|.||.+||.+|+++||+|++||+++++.+.+ .+.|. ...+++.+ ++
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~Ga-------------~~~~s~~e~~~ 379 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRF-----------ENAGG-------------LAGNSPAEVAK 379 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcCC-------------eecCCHHHHHh
Confidence 3789999999999999999999999999999999887765 44443 23455555 78
Q ss_pred CCcEEEEeccccHHHHHHHHH--HHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCC-------ce
Q 022434 84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KL 152 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~ 152 (297)
+||+||.|+|++.+++..++. .+.+.++++.+++ ++|.++.. .++++.+.. .-.|.+|++.|-.. +.
T Consensus 380 ~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G~ 457 (1378)
T PLN02858 380 DVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMGT 457 (1378)
T ss_pred cCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcCC
Confidence 999999999988877666543 2444455555554 33333332 355555422 01345565554111 12
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022434 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG 223 (297)
Q Consensus 153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g 223 (297)
+.++.+ ++++.+++++++|+.+|++++++...+| .++|+++. ..++|++.++++.+++++.+-.++..+
T Consensus 458 L~imvg--G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s 535 (1378)
T PLN02858 458 LTIMAS--GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNA 535 (1378)
T ss_pred ceEEEE--CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 345555 6889999999999999998887543333 37777654 457899999999889999988877765
Q ss_pred cC
Q 022434 224 TN 225 (297)
Q Consensus 224 ~g 225 (297)
.|
T Consensus 536 ~g 537 (1378)
T PLN02858 536 GG 537 (1378)
T ss_pred cc
Confidence 54
No 49
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=4.5e-15 Score=128.57 Aligned_cols=152 Identities=22% Similarity=0.305 Sum_probs=116.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG---LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
+++|+|||+|.||..++..|.++| ++|.++||++++.+.+.+. .|. ..+.+.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g~-------------~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YGV-------------RAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cCC-------------eecCChHH
Confidence 358999999999999999999999 7899999998876654211 121 23445544
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceE-EEecCC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV-EVIRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v-ei~~~~ 159 (297)
+.++|+||.|+|... ..++++++.+.+ +.+|++.+++++.+.+...++...+++..||..|......+ .+.++.
T Consensus 59 ~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 778999999998543 556777777665 46777888899988888877655688899998776544444 356777
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEe
Q 022434 160 DTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 160 ~~~~~~~~~~~~ll~~lg~~~i~v 183 (297)
.++++.++.++.+|+.+|..+++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEEC
Confidence 789999999999999999855443
No 50
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.70 E-value=4.8e-15 Score=133.41 Aligned_cols=157 Identities=21% Similarity=0.240 Sum_probs=112.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.+||..|.++|++|.+|+++++..+.... ...|... ..+++.++ +++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 47999999999999999999999999999998875443310 1122211 12344444 789
Q ss_pred CcEEEEeccccHHHHHHHHHHHHh-hcCCCeEEEecCCCC--cHHHHhhhcCCCCeEEEeecCCCCCC------------
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPL------------ 149 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~------------ 149 (297)
||+||+|+|.+. ...++.++.+ .++++++|...+|.- ..+.+...+....++++.||+..+..
T Consensus 61 aDlVilavP~~~--~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVDA--TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHHH--HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 999999999753 5688888886 367787776444432 22445554455678999999754321
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 150 MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 150 ~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
....-++++..++++.++.++++++.+|..++++.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~ 173 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLD 173 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 11244677777899999999999999999998774
No 51
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.69 E-value=1.1e-14 Score=126.03 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=120.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+ +.|. ...++.++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~----------~~g~-------------~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD----------KYGI-------------TITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH----------hcCc-------------EEeCCcHH
Confidence 479999999999999999999885 69999999987765411 1232 34455554
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEE-ecCC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEV-IRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei-~~~~ 159 (297)
+++||+||.|++. .....+++++.+.++++++++|...+++++.+.+.++.+.+++.+.|.-|..+...+.. ..+.
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 7899999999995 33667788888888888899999999999999998865567888888777655555444 4666
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEE
Q 022434 160 DTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 160 ~~~~~~~~~~~~ll~~lg~~~i~ 182 (297)
..+++..+.++.+|+.+|...+.
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~~~ 160 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTEVV 160 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEE
Confidence 77888999999999999997544
No 52
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.69 E-value=1.9e-16 Score=153.68 Aligned_cols=105 Identities=23% Similarity=0.412 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---hHHHHHHhhchHH
Q 022434 166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDV 241 (297)
Q Consensus 166 ~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~ 241 (297)
.+.+.+++..+++.+..+.+.+++|.||++.+++|||++++++|+ ++++|||.++.+|+|||+ |||+++|.+|++.
T Consensus 624 ~~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~ 703 (737)
T TIGR02441 624 NSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADK 703 (737)
T ss_pred CHHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHH
Confidence 344556677777777655678999999999999999999999999 699999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcHHHHHHHHc-C
Q 022434 242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDA-G 271 (297)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~-g 271 (297)
+...++.+++.+++ +|+|+++|.+|+++ |
T Consensus 704 v~~~~~~l~~~~g~-~~~p~~lL~~~~~~~g 733 (737)
T TIGR02441 704 LVDKMEKYAAAYGV-QFTPCQLLLDHAKSPG 733 (737)
T ss_pred HHHHHHHHHHHhCC-CcCCCHHHHHHHHhcC
Confidence 99999999999997 89999999999986 5
No 53
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.4e-14 Score=126.55 Aligned_cols=201 Identities=14% Similarity=0.168 Sum_probs=138.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI--------SSSIQKFVSKGQLSQAVGTDAPRRLRCTS 77 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (297)
.+|+|||+|++|.++|..++++|++|+.+|+++.+++.+.+.. ...+...++. ++++.++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~------------g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVES------------GKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhc------------CCceEec
Confidence 7899999999999999999999999999999999988764321 1112223333 4568999
Q ss_pred CccccCCCcEEEEeccccH--------HHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhc-------CCCCeEEE
Q 022434 78 NLKDLHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASAT-------SRPCQVIG 140 (297)
Q Consensus 78 ~~~~~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~-------~~~~~~~g 140 (297)
+.+.++.||++|.|||+.. .......+.|.+.++.+.+++ -+|+.+.. +++...+ ..+..|.-
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 9999999999999999754 344556667888888776554 44444433 3443322 22223322
Q ss_pred eecCCCCCCCce---------EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccch-h---h----hHHHHHHHHHHHHH
Q 022434 141 MHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVCSQDYA-G---F----IVNRILMPMINEAF 203 (297)
Q Consensus 141 ~h~~~p~~~~~~---------vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~-g---~----i~nri~~~~~~Ea~ 203 (297)
. ++|.+..|. ..|+.| .+|...+.+..+++.+-...+.+.+.. . . +...+..+++||..
T Consensus 158 a--ysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 A--YSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred e--eCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2 355554442 235555 688999999999999866666665432 1 2 34445578999999
Q ss_pred HHHHcCCCCHHH-HHHHHhh
Q 022434 204 FTLYTGVATKED-IDAGMKL 222 (297)
Q Consensus 204 ~l~~~g~~~~~~-id~a~~~ 222 (297)
.++++-+++..+ |+.|-+.
T Consensus 234 li~~~~GIdvwevIeaAnt~ 253 (436)
T COG0677 234 LICNAMGIDVWEVIEAANTK 253 (436)
T ss_pred HHHHHhCCcHHHHHHHhccC
Confidence 999887778555 6666655
No 54
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=5.3e-15 Score=128.85 Aligned_cols=191 Identities=13% Similarity=0.151 Sum_probs=130.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
.++|+|||+|.||.+|+..|.++| ++|+++||+++ +++.+. .+.|. ..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~----------~~~g~-------------~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELH----------QKYGV-------------KGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHH----------HhcCc-------------eEeCCH
Confidence 469999999999999999999998 88999999764 444331 11122 344555
Q ss_pred cc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc-eEEEec
Q 022434 80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIR 157 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vei~~ 157 (297)
.+ +++||+||.|++.+. ..+++.++.+.++++++|++..++++++.+.+.+....++++.+|..|..... ..-++.
T Consensus 60 ~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 54 688999999998654 34566778777777888888888999988888775555788888865544433 333446
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeccch-----hh--hHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhh
Q 022434 158 GADTSDETFRATKALAERFGKTVVCSQDYA-----GF--IVNRILMPMINEAFF-TLYTGVATKEDIDAGMKL 222 (297)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~-----g~--i~nri~~~~~~Ea~~-l~~~g~~~~~~id~a~~~ 222 (297)
+...+++.++.++++|+.+|...++ .+.- +. -...+ ...+.|++. ...+.+.++++...++..
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~v-~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSVV-EEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEe-CHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6667789999999999999986542 2110 00 00011 233344443 455555787776666554
No 55
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.67 E-value=1.9e-15 Score=136.42 Aligned_cols=140 Identities=19% Similarity=0.280 Sum_probs=108.9
Q ss_pred CCcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-c
Q 022434 4 KMKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-D 81 (297)
Q Consensus 4 ~~~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 81 (297)
.+++|+||| +|.||.++|..|.++||+|++||+++.. +.+ .
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~-------------------------------------~~~~~ 139 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD-------------------------------------RAEDI 139 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch-------------------------------------hHHHH
Confidence 357899998 9999999999999999999999986310 111 2
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCCCeEEEeecCCCCCCCceEE--Eec
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLMKLVE--VIR 157 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve--i~~ 157 (297)
+++||+||+|+|++. ...++.++.+ ++++++|+.++|.- ++..+.+... .+++|.||+.+|....+.. ++.
T Consensus 140 ~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~ 214 (374)
T PRK11199 140 LADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVV 214 (374)
T ss_pred HhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEE
Confidence 468999999999876 4677888888 88999998887753 3466666543 3699999999886544322 444
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434 158 GADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d 185 (297)
.+.++++.++++.++++.+|.+++++..
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~~v~~~~~ 242 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGARLHRISA 242 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCCEEEECCH
Confidence 5557888999999999999999998853
No 56
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.66 E-value=8.2e-15 Score=134.12 Aligned_cols=202 Identities=10% Similarity=0.131 Sum_probs=127.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
+.++|+|||+|+||.++|..|++ ||+|++||+++++++.+.+... ..++.+.+ ..++.++++.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~------------~g~l~~t~~~ 71 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELRE------------ARYLKFTSEI 71 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHh------------hCCeeEEeCH
Confidence 45799999999999999999887 6999999999999887632110 01111111 1345677777
Q ss_pred cccCCCcEEEEeccccH------HHHH--HHHHHHHhhcCCCeEEE-ecCCCCcHH-HHh-hhcCC--C----CeEEEee
Q 022434 80 KDLHSADIIVEAIVESE------DVKK--KLFSELDKITKASAILA-SNTSSISIT-RLA-SATSR--P----CQVIGMH 142 (297)
Q Consensus 80 ~~~~~aD~Vi~~v~e~~------~~k~--~~~~~l~~~~~~~~ii~-s~ts~~~~~-~l~-~~~~~--~----~~~~g~h 142 (297)
+.+++||++|.|||++. ++.. ...+.|.+.++++.+++ .+|..+..+ ++. ..+.. . ..+.-.
T Consensus 72 ~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~- 150 (425)
T PRK15182 72 EKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVG- 150 (425)
T ss_pred HHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEe-
Confidence 77899999999999873 2222 22345777777666554 344433332 221 22111 1 111111
Q ss_pred cCCCCCCCc---------eEEEecCCCCcHHHHHHHHHHHHHcC-CeEEEeccc-hh---hhHHHHH----HHHHHHHHH
Q 022434 143 FMNPPPLMK---------LVEVIRGADTSDETFRATKALAERFG-KTVVCSQDY-AG---FIVNRIL----MPMINEAFF 204 (297)
Q Consensus 143 ~~~p~~~~~---------~vei~~~~~~~~~~~~~~~~ll~~lg-~~~i~v~d~-~g---~i~nri~----~~~~~Ea~~ 204 (297)
++|..+.+ ...++.| .+++..+.+..+++.+. ..++++.+. .+ .++++.+ .+++||++.
T Consensus 151 -~~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~ 227 (425)
T PRK15182 151 -YSPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAI 227 (425)
T ss_pred -eCCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333322 1235666 46788899999999975 345555442 12 3566555 368999999
Q ss_pred HHHcCCCCHHHHHHHHhh
Q 022434 205 TLYTGVATKEDIDAGMKL 222 (297)
Q Consensus 205 l~~~g~~~~~~id~a~~~ 222 (297)
++++-++|+.++-.++..
T Consensus 228 lae~~GiD~~~v~~a~~~ 245 (425)
T PRK15182 228 IFNRLNIDTEAVLRAAGS 245 (425)
T ss_pred HHHHhCcCHHHHHHHhcC
Confidence 999988999988777543
No 57
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.66 E-value=5.5e-14 Score=124.18 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=112.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+++|+|||+|.||.++|..|.++|+ +|++||+++++.+.+ .+.|... ....+.++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~ 63 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-----------RELGLGD-----------RVTTSAAEA 63 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-----------HhCCCCc-----------eecCCHHHH
Confidence 4799999999999999999999995 899999999876654 2333211 12334443
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEeecCCCCCCC--------
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------- 150 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------- 150 (297)
+++||+||.|+|... ...++.++.+.++++++|...+ +... ..+........++++.|++.++...
T Consensus 64 ~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~dvg-s~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 64 VKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVTDVG-SVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred hcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEEeCc-cchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 789999999999754 4567777877788887765433 3332 3444444444589999998764321
Q ss_pred ----ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 151 ----KLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 151 ----~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
..+.+++..+++++.++.+.++++.+|.+++++.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 1234566667889999999999999999998874
No 58
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.1e-14 Score=127.64 Aligned_cols=205 Identities=18% Similarity=0.246 Sum_probs=137.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
|||+|||.|++|...+.+|++.||+|+.+|.++++++.+.+.. +..++.+++++. ..+|+++++|+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~--------~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL--------ASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc--------ccCcEEEEcCHHH
Confidence 5899999999999999999999999999999999999887643 445666666543 2367899999987
Q ss_pred -cCCCcEEEEeccccH--------HHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcC--CCCeEEEeecCCCC
Q 022434 82 -LHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILASNTSSISI---TRLASATS--RPCQVIGMHFMNPP 147 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~--~~~~~~g~h~~~p~ 147 (297)
++++|++|.||+++. .....+.++|.++.+..++|+ +-||+|+ +.+.+.+. .+.+-.++ -+||.
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v-~~NPE 150 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEV-ASNPE 150 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceE-ecChH
Confidence 899999999998743 345567778888888866555 5566665 23333221 11110011 02332
Q ss_pred CCCce---------EEEecCCCCcHHHHHHHHHHHHHc--CCeEEEeccch-----hhhHHHHHH---HHHHHHHHHHHc
Q 022434 148 PLMKL---------VEVIRGADTSDETFRATKALAERF--GKTVVCSQDYA-----GFIVNRILM---PMINEAFFTLYT 208 (297)
Q Consensus 148 ~~~~~---------vei~~~~~~~~~~~~~~~~ll~~l--g~~~i~v~d~~-----g~i~nri~~---~~~~Ea~~l~~~ 208 (297)
.+... --++.|. .++.+.+.++++++.. ...|++..+.. .+..|.+++ .++||...+++.
T Consensus 151 FLREG~Av~D~~~PdRIViG~-~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 151 FLREGSAVYDFLYPDRIVIGV-RSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred HhcCcchhhhccCCCeEEEcc-CChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 0145553 2334666667777654 34455443322 246777765 689999999999
Q ss_pred CCCCHHHHHHHHh
Q 022434 209 GVATKEDIDAGMK 221 (297)
Q Consensus 209 g~~~~~~id~a~~ 221 (297)
-++|.++|-.++.
T Consensus 230 ~g~D~~~V~~gIG 242 (414)
T COG1004 230 VGADVKQVAEGIG 242 (414)
T ss_pred hCCCHHHHHHHcC
Confidence 8899999887763
No 59
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.65 E-value=3.7e-14 Score=125.95 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=129.5
Q ss_pred cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022434 6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV 65 (297)
Q Consensus 6 ~~I~viG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 65 (297)
+||.|.|+|+. |.+||..|+++||+|++||++++.++.. .++.+.+.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~------~~~~l~~~Gi----- 69 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEE------LWKKVEDAGV----- 69 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHH------HHHHHHHCCC-----
Confidence 47888998863 8889999999999999999998865431 1122234442
Q ss_pred hcccCCCcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH----HHhhhcCCCCeEEE
Q 022434 66 GTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT----RLASATSRPCQVIG 140 (297)
Q Consensus 66 ~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~----~l~~~~~~~~~~~g 140 (297)
.++++..+ +++||+||.|+|.... .+.++..+.+.++++++|+ ++|+.++. .+.+.+..+.+.++
T Consensus 70 --------~~asd~~eaa~~ADvVIlaVP~~~~-v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~g 139 (342)
T PRK12557 70 --------KVVSDDAEAAKHGEIHILFTPFGKK-TVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVG 139 (342)
T ss_pred --------EEeCCHHHHHhCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccC
Confidence 45556554 7899999999997663 4567778888888888776 45555543 34455544445667
Q ss_pred eecCCCCCC----CceEEEecCC------CCcHHHHHHHHHHHHHcCCeEEEeccchh---hhHHHHHHH----HHHHHH
Q 022434 141 MHFMNPPPL----MKLVEVIRGA------DTSDETFRATKALAERFGKTVVCSQDYAG---FIVNRILMP----MINEAF 203 (297)
Q Consensus 141 ~h~~~p~~~----~~~vei~~~~------~~~~~~~~~~~~ll~~lg~~~i~v~d~~g---~i~nri~~~----~~~Ea~ 203 (297)
+++++|..+ ....+++.+. .++++.+++++++++.+|+++++++...+ ..+|+++.+ -..|++
T Consensus 140 i~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~ 219 (342)
T PRK12557 140 ISSMHPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYY 219 (342)
T ss_pred eeecCCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765432 1224555432 34889999999999999999987764333 245555543 456888
Q ss_pred HHHHcCCCCHHHH
Q 022434 204 FTLYTGVATKEDI 216 (297)
Q Consensus 204 ~l~~~g~~~~~~i 216 (297)
.+.++-+.++.+.
T Consensus 220 ~l~~~~~~~p~~~ 232 (342)
T PRK12557 220 SVGTKIIKAPKEM 232 (342)
T ss_pred HHHHHhCCCHHHH
Confidence 8888766666554
No 60
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.62 E-value=1.7e-13 Score=126.14 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=116.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
|+|+||| +|.||.++|..|..+|++|++||++++...... .+.|. ..+++.++ ++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a----------~~~gv-------------~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVA----------KELGV-------------EYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHH----------HHcCC-------------eeccCHHHHhc
Confidence 4799997 799999999999999999999999987653321 12232 34455544 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC--CcHHHHhhhcCCCCeEEEeecCCCCC----CCceEEEec
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPP----LMKLVEVIR 157 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~----~~~~vei~~ 157 (297)
+||+||.|+|.+. ...++.++.+.++++++|++.+|. .+.+.+.+.++...++++.||+..|. ....+.+++
T Consensus 58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 9999999999754 357788888888889988766663 33456666655556899999976543 223455777
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434 158 GADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d 185 (297)
+..++++.++.+.++++.+|.+++++..
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~~ 163 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTSP 163 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 7778899999999999999999987743
No 61
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.62 E-value=3.2e-14 Score=131.35 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=126.0
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc----c
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD----L 82 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~ 82 (297)
+|+|||+|.||.+||.+|+++||+|++|||++++.+.+ .+.+.. -..+...+++++ +
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l-----------~~~~~~--------g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEF-----------LAEHAK--------GKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH-----------HhhccC--------CCCceecCCHHHHHhhc
Confidence 48999999999999999999999999999999988766 222100 001123344443 3
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCCCCc-------eE
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK-------LV 153 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~-------~v 153 (297)
+.+|+||.++|.+..+ .+++.++.+.++++.+|+..+++.+. .+..+.+. -.|+||++.| +++ ..
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~----~~gi~fvdap-VsGG~~gA~~G~ 135 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELK----AKGILFVGSG-VSGGEEGARKGP 135 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHH----hcCCEEEcCC-CCCCHHHHhcCC
Confidence 5689999999987664 45667787777777766644433332 23333332 1245666655 222 12
Q ss_pred EEecCCCCcHHHHHHHHHHHHHcCCeE------EEeccc-hh---hhHHHHH-H---HHHHHHHHHHH-cCCCCHHHHHH
Q 022434 154 EVIRGADTSDETFRATKALAERFGKTV------VCSQDY-AG---FIVNRIL-M---PMINEAFFTLY-TGVATKEDIDA 218 (297)
Q Consensus 154 ei~~~~~~~~~~~~~~~~ll~~lg~~~------i~v~d~-~g---~i~nri~-~---~~~~Ea~~l~~-~g~~~~~~id~ 218 (297)
.++.| ++++++++++++|+.++.++ .++++. .| .++++.+ . ..+.|++.++. ..+.+++++-.
T Consensus 136 ~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~ 213 (467)
T TIGR00873 136 SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAE 213 (467)
T ss_pred cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 35554 89999999999999999874 677653 22 2555543 3 45789999985 46678888877
Q ss_pred HH
Q 022434 219 GM 220 (297)
Q Consensus 219 a~ 220 (297)
++
T Consensus 214 v~ 215 (467)
T TIGR00873 214 VF 215 (467)
T ss_pred HH
Confidence 77
No 62
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.61 E-value=2.5e-14 Score=127.41 Aligned_cols=197 Identities=20% Similarity=0.221 Sum_probs=126.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCCcEEecCccc-cC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-VGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||+|.||..+|..|+++|++|++||++++.++.+.+ .+..... .......++..+++.++ ++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINA-----------DRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------cCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 48999999999999999999999999999999987766532 1110000 00011123455666664 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-------HHHhhhcCCCCeEEEeecCCCCCCC-----c
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPLM-----K 151 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~~-----~ 151 (297)
+||+||.|+|.. ....++.++.+.+++++++++.++++.. +.+.+....... ..++..|... .
T Consensus 71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~---~~~~~~P~~~~~~~~g 145 (325)
T PRK00094 71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAP---IAVLSGPSFAKEVARG 145 (325)
T ss_pred CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCc---eEEEECccHHHHHHcC
Confidence 999999999974 3567778888888888887766655554 222332221001 1112222110 1
Q ss_pred --eEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh---------------------hHHHH----HHHHHHHHHH
Q 022434 152 --LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVNRI----LMPMINEAFF 204 (297)
Q Consensus 152 --~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~---------------------i~nri----~~~~~~Ea~~ 204 (297)
..-++. +.+.+.++++.++|+..+..+++..|..+. +.++. ....++|++.
T Consensus 146 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~ 223 (325)
T PRK00094 146 LPTAVVIA--STDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR 223 (325)
T ss_pred CCcEEEEE--eCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 111222 257889999999999999888776664431 12222 3356789999
Q ss_pred HHHcCCCCHHHHHHHH
Q 022434 205 TLYTGVATKEDIDAGM 220 (297)
Q Consensus 205 l~~~g~~~~~~id~a~ 220 (297)
+++.-+++++.+....
T Consensus 224 la~~~G~d~~~~~~~~ 239 (325)
T PRK00094 224 LGVALGANPETFLGLA 239 (325)
T ss_pred HHHHhCCChhhhhccc
Confidence 9988777888776543
No 63
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.59 E-value=5.7e-15 Score=143.48 Aligned_cols=86 Identities=33% Similarity=0.562 Sum_probs=82.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCc
Q 022434 186 YAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPC 261 (297)
Q Consensus 186 ~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~ 261 (297)
.+|++.||++.+++|||++++++|+ ++++|||.+++.|+|||+ |||+++|.+|++.+...++.++..+++ +|+|+
T Consensus 614 ~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~-~~~p~ 692 (708)
T PRK11154 614 SANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD-RFTPC 692 (708)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC-ccCCC
Confidence 5799999999999999999999998 899999999999999997 999999999999999999999999988 89999
Q ss_pred HHHHHHHHcCC
Q 022434 262 PLLVQYVDAGR 272 (297)
Q Consensus 262 ~~l~~~~~~g~ 272 (297)
++|.+|+++|.
T Consensus 693 ~~l~~~~~~~~ 703 (708)
T PRK11154 693 ERLVEMAERGE 703 (708)
T ss_pred HHHHHHHHcCC
Confidence 99999999863
No 64
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.58 E-value=8.9e-15 Score=141.81 Aligned_cols=86 Identities=34% Similarity=0.549 Sum_probs=81.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCc
Q 022434 186 YAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPC 261 (297)
Q Consensus 186 ~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~ 261 (297)
.+|+++||++.+++|||++++++|+ ++++|||.++++|+|||. |||+++|.+|++.+...++.++..+++ +|+|+
T Consensus 607 ~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~-~~~p~ 685 (699)
T TIGR02440 607 EASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGD-RFTPC 685 (699)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCC-CcCCC
Confidence 5789999999999999999999998 899999999999999996 999999999999999999999999988 89999
Q ss_pred HHHHHHHHcCC
Q 022434 262 PLLVQYVDAGR 272 (297)
Q Consensus 262 ~~l~~~~~~g~ 272 (297)
++|.+|+++|.
T Consensus 686 ~~L~~~~~~~~ 696 (699)
T TIGR02440 686 QRLVAMAAEKQ 696 (699)
T ss_pred HHHHHHHHcCC
Confidence 99999998763
No 65
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.58 E-value=1.8e-13 Score=117.91 Aligned_cols=157 Identities=24% Similarity=0.283 Sum_probs=115.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC--cc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN--LK 80 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 80 (297)
.++|+|+|+|.||.++|..|..+|+.|.+++++.+ .++.+ .+.|... ..+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d-----------~~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID-----------ELTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc-----------ccccchhhh
Confidence 47899999999999999999999999977766554 33333 3344422 12233 34
Q ss_pred ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCC-CC-----ce
Q 022434 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPP-LM-----KL 152 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~-~~-----~~ 152 (297)
.++++|+||.|||- ....++++++.+.++++++|...+|.-. ++.+.+..+...++++.||+..|+ .. ..
T Consensus 61 ~~~~aD~VivavPi--~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVPI--EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEeccH--HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 47889999999994 4456888999988999999987776553 355555543322899999988772 11 23
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d 185 (297)
+-++++..++.+.++.++++++.+|.+++.+..
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~ 171 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDA 171 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcCh
Confidence 557777778899999999999999999988743
No 66
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.57 E-value=3.4e-13 Score=124.59 Aligned_cols=205 Identities=12% Similarity=0.181 Sum_probs=129.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
|+|+|||+|.+|..+|..|+++| ++|+++|+++++++.+++.. +..++.++.++ ...++.+++++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~~ 72 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTDV 72 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcCH
Confidence 58999999999999999999985 78999999999988764321 11222222211 12357889998
Q ss_pred cc-cCCCcEEEEeccccH-------------HHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCC---CCeEEE
Q 022434 80 KD-LHSADIIVEAIVESE-------------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSR---PCQVIG 140 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v~e~~-------------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~---~~~~~g 140 (297)
++ +++||++|.|||++. .....+.++|.+.++++.+|+ .+|..+.. +.+...+.. ...|-
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~- 151 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQ- 151 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeE-
Confidence 75 899999999997543 245566777888888877655 33333333 334333221 11110
Q ss_pred eecCCCCCCCc---------eEEEe-cCCC--CcHHHHHHHHHHHHHcCC-eEEEeccc-----hhhhHHHH---HHHHH
Q 022434 141 MHFMNPPPLMK---------LVEVI-RGAD--TSDETFRATKALAERFGK-TVVCSQDY-----AGFIVNRI---LMPMI 199 (297)
Q Consensus 141 ~h~~~p~~~~~---------~vei~-~~~~--~~~~~~~~~~~ll~~lg~-~~i~v~d~-----~g~i~nri---~~~~~ 199 (297)
+ .++|..+.+ ...++ .+.. ..++..+.+.++++.+-. .++.+.+. .....|.+ ..+++
T Consensus 152 v-~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~ 230 (473)
T PLN02353 152 I-LSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSV 230 (473)
T ss_pred E-EECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 134433322 12344 4321 125578888999998743 34444332 12344433 35899
Q ss_pred HHHHHHHHcCCCCHHHHHHHHh
Q 022434 200 NEAFFTLYTGVATKEDIDAGMK 221 (297)
Q Consensus 200 ~Ea~~l~~~g~~~~~~id~a~~ 221 (297)
||...++++-++|..++-.++.
T Consensus 231 NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 231 NAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHhCCCHHHHHHHhC
Confidence 9999999988899999888765
No 67
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.56 E-value=1.9e-12 Score=116.16 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=107.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----hhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS----QAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+|||+|.||..+|..|+++||+|++||+++. .+.+ .+.|... ..+......++..+++.+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDEL-----------RAHGLTLTDYRGRDVRVPPSAIAFSTDPAA 70 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHH-----------HhcCceeecCCCcceecccceeEeccChhh
Confidence 5899999999999999999999999999999653 2222 2222210 0011111234555666666
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecCC----CCCCCc---eE
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMN----PPPLMK---LV 153 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~----p~~~~~---~v 153 (297)
++++|+||.|++... ..+++.++.+.++++++|++.++++.. +.+.+.+.....+.+.+++. .|.... .-
T Consensus 71 ~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g 148 (341)
T PRK08229 71 LATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSG 148 (341)
T ss_pred ccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCC
Confidence 889999999998754 457788888888888888877888775 55666654322334444321 221100 11
Q ss_pred EEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 154 EVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
++..+ ..+.++++.++|+..|.++.+.+|..+
T Consensus 149 ~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 149 ALAIE---ASPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred ceEec---CCchHHHHHHHHHhcCCCceecchhHH
Confidence 12222 124568889999999988888887643
No 68
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.56 E-value=1.1e-13 Score=123.33 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=121.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.++|+|||+|.||.+||..|+++||+|++|+|++++.+.+.+...+. . +. .|. ....++..++++++ ++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~-~-~~-~g~-------~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR-E-YL-PGV-------ALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc-c-cC-CCC-------cCCCCeEEeCCHHHHHc
Confidence 56899999999999999999999999999999988776653211000 0 00 010 11223456667665 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc-----HHHHhhhcCC--CCeEEEeecCCCCCCC------
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-----ITRLASATSR--PCQVIGMHFMNPPPLM------ 150 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-----~~~l~~~~~~--~~~~~g~h~~~p~~~~------ 150 (297)
++|+||+++|+.. ..+++ +.+++++++++.+.++. ...+++.+.. ..++ .+...|...
T Consensus 74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~---~~~~gP~~a~~~~~~ 144 (328)
T PRK14618 74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARV---AVLSGPNHAEEIARF 144 (328)
T ss_pred CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCe---EEEECccHHHHHHcC
Confidence 9999999999874 23344 33456666665555554 3344444321 0111 112222111
Q ss_pred -ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh---------------------hHH----HHHHHHHHHHHH
Q 022434 151 -KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVN----RILMPMINEAFF 204 (297)
Q Consensus 151 -~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~---------------------i~n----ri~~~~~~Ea~~ 204 (297)
+...++.+ ++++.+++++++|+..+.++.+..|..|. +.+ .++...++|+..
T Consensus 145 ~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~ 222 (328)
T PRK14618 145 LPAATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVR 222 (328)
T ss_pred CCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 12334443 68899999999999999888754443221 112 223456789999
Q ss_pred HHHcCCCCHHHHHHHHh
Q 022434 205 TLYTGVATKEDIDAGMK 221 (297)
Q Consensus 205 l~~~g~~~~~~id~a~~ 221 (297)
+++.-+++++.+.....
T Consensus 223 la~~~G~~~~~~~~~~~ 239 (328)
T PRK14618 223 FGVALGAEEATFYGLSG 239 (328)
T ss_pred HHHHhCCCccchhcCcc
Confidence 99887788888766554
No 69
>PLN02256 arogenate dehydrogenase
Probab=99.54 E-value=3.9e-13 Score=117.83 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=110.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
..++|+|||+|.||.++|..|.+.|++|++||+++.. +.+ .+.|. ...++.++ +
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a-----------~~~gv-------------~~~~~~~e~~ 89 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIA-----------AELGV-------------SFFRDPDDFC 89 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHH-----------HHcCC-------------eeeCCHHHHh
Confidence 3578999999999999999999999999999998632 211 12232 23344544 3
Q ss_pred -CCCcEEEEeccccHHHHHHHHHHH-HhhcCCCeEEEecCC--CCcHHHHhhhcCCCCeEEEeecCCCCCCCce------
Q 022434 83 -HSADIIVEAIVESEDVKKKLFSEL-DKITKASAILASNTS--SISITRLASATSRPCQVIGMHFMNPPPLMKL------ 152 (297)
Q Consensus 83 -~~aD~Vi~~v~e~~~~k~~~~~~l-~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~------ 152 (297)
.++|+||.|+|... ..+++.++ ...++++++|++.+| +...+.+.+.++...++++.||+.++.....
T Consensus 90 ~~~aDvVilavp~~~--~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~ 167 (304)
T PLN02256 90 EEHPDVVLLCTSILS--TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP 167 (304)
T ss_pred hCCCCEEEEecCHHH--HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence 46999999999643 45677777 456778888877666 3445667776655557999999988764311
Q ss_pred EEEec----CCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 153 VEVIR----GADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 153 vei~~----~~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
+-+.+ ...++++.++.++++++.+|.+++.+.
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 168 FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 11111 145688899999999999999998874
No 70
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.52 E-value=2.4e-12 Score=111.89 Aligned_cols=152 Identities=12% Similarity=0.105 Sum_probs=113.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
++|+|||+|.||.+++..|.++| ++|.+|+++++ +.+.. .+.. ..+..+.+.+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l-----------~~~~-----------~~~~~~~~~~ 59 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQL-----------YDKY-----------PTVELADNEA 59 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHH-----------HHHc-----------CCeEEeCCHH
Confidence 57999999999999999999998 78999998753 22222 1110 0113345555
Q ss_pred c-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEE-ecC
Q 022434 81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEV-IRG 158 (297)
Q Consensus 81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei-~~~ 158 (297)
+ ++++|+||.|+|... ..+++.++.+.++++++|+|...+++..++.+.++. .+++.+.|.-|..+...+.. ..+
T Consensus 60 e~~~~aDvVilavpp~~--~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~ 136 (277)
T PRK06928 60 EIFTKCDHSFICVPPLA--VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHA 136 (277)
T ss_pred HHHhhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecC
Confidence 4 789999999998433 557888888777778888889999999999987753 36777777766655554444 455
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEE
Q 022434 159 ADTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 159 ~~~~~~~~~~~~~ll~~lg~~~i~ 182 (297)
...+++..+.++.+|+.+|...++
T Consensus 137 ~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 137 ETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 667888999999999999997765
No 71
>PRK07680 late competence protein ComER; Validated
Probab=99.52 E-value=2.7e-12 Score=111.54 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=105.9
Q ss_pred EEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+|+|||+|.||.+++..|.++|+ +|.++||++++.+.+. +.. ..+..+.+.++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~-----------~~~-----------~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIK-----------ERY-----------PGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHH-----------HHc-----------CCeEEECCHHHH
Confidence 79999999999999999999994 7999999988765541 110 01234555555
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCC-CceEEEecCCC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL-MKLVEVIRGAD 160 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~-~~~vei~~~~~ 160 (297)
++++|+||.|++... ..++++++.+.++++.+|++.+++++.+.+.+.+. .+++.+++..|... .+..-++.+..
T Consensus 60 ~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999997433 45677888877777788888888888888887764 23444444222111 12223345555
Q ss_pred CcHHHHHHHHHHHHHcCCeEEE
Q 022434 161 TSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 161 ~~~~~~~~~~~ll~~lg~~~i~ 182 (297)
.+++..+.++++|+.+|....+
T Consensus 136 ~~~~~~~~~~~ll~~~G~~~~i 157 (273)
T PRK07680 136 CSEEDQQKLERLFSNISTPLVI 157 (273)
T ss_pred CCHHHHHHHHHHHHcCCCEEEE
Confidence 6788889999999999965444
No 72
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.52 E-value=1.2e-12 Score=114.95 Aligned_cols=184 Identities=19% Similarity=0.145 Sum_probs=126.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.++|+|||+|.||.++|..|..+|++|++++++.++.... ..+.|. ... +.++ ++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~----------A~~~G~-------------~~~-s~~eaa~ 72 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKK----------AEADGF-------------EVL-TVAEAAK 72 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHH----------HHHCCC-------------eeC-CHHHHHh
Confidence 4789999999999999999999999999988775433221 022232 233 4444 88
Q ss_pred CCcEEEEeccccHHHHHHHH-HHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC-------CCceEE-
Q 022434 84 SADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP-------LMKLVE- 154 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~-------~~~~ve- 154 (297)
.||+|+.++|+... ..++ .++.+.+++++++ +-.+++.+..+....+...+++-+.|-.|.+ ....+.
T Consensus 73 ~ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~ 149 (330)
T PRK05479 73 WADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPC 149 (330)
T ss_pred cCCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceE
Confidence 99999999997654 5666 7788888888877 5677888876665554445677777777765 222222
Q ss_pred Ee-cCCCCcHHHHHHHHHHHHHcCCeEE-----Eecc-c-h---h--hhHHHHHHHHHHHHHHHHHcCCCCHHH
Q 022434 155 VI-RGADTSDETFRATKALAERFGKTVV-----CSQD-Y-A---G--FIVNRILMPMINEAFFTLYTGVATKED 215 (297)
Q Consensus 155 i~-~~~~~~~~~~~~~~~ll~~lg~~~i-----~v~d-~-~---g--~i~nri~~~~~~Ea~~l~~~g~~~~~~ 215 (297)
++ .....+.+..+.+..+++.+|..+. ..++ . . | .++-.-+..++..++..+.+.+.+|+.
T Consensus 150 l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 150 LIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 22 3444568899999999999998764 2222 1 1 1 133334557788888888776667764
No 73
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.52 E-value=5.8e-12 Score=107.11 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=119.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+|||+|+||.+|+..|.++| .+|++.++++++.+.+. .+.|. ..+++.++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~----------~~~g~-------------~~~~~~~~ 58 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALA----------AEYGV-------------VTTTDNQE 58 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHH----------HHcCC-------------cccCcHHH
Confidence 58999999999999999999999 68999999999876431 12222 11444444
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE-EecCC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-i~~~~ 159 (297)
+..+|+||.|+. +....+++.++.. ..++.+|+|-..+++++.+.+.++ ..+++.+.|..|..+...+. +..+.
T Consensus 59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 788999999996 3446678888887 678889999999999999999987 56788888877776555554 44557
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEEe
Q 022434 160 DTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 160 ~~~~~~~~~~~~ll~~lg~~~i~v 183 (297)
..+++..+.+.++|+.+|...++-
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEec
Confidence 789999999999999999987764
No 74
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.51 E-value=2e-12 Score=111.36 Aligned_cols=181 Identities=12% Similarity=0.140 Sum_probs=121.2
Q ss_pred EEEEECCChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
+|+|||+|.||.+|+..|.++|++ +.++++++++.+.+. +.. ..+...++.++ +
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~-----------~~~-----------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLA-----------ERF-----------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHH-----------HHc-----------CCceEeCCHHHHH
Confidence 799999999999999999999965 578999988766542 110 01134455555 6
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCCCc
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~~~ 162 (297)
+++|+||.|++.+ . ...++.++. ..++.++++...+++.+.+.+.+....+++..+|..|......+..+.. .
T Consensus 60 ~~aDvVilav~p~-~-~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~--~- 132 (258)
T PRK06476 60 DRSDVVFLAVRPQ-I-AEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP--P- 132 (258)
T ss_pred HhCCEEEEEeCHH-H-HHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC--C-
Confidence 8899999999942 2 456666652 3567788888888999999888765456667777755543333333332 1
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccc--h------hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh
Q 022434 163 DETFRATKALAERFGKTVVCSQDY--A------GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMK 221 (297)
Q Consensus 163 ~~~~~~~~~ll~~lg~~~i~v~d~--~------g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~ 221 (297)
.+.++++|+.+|..+++..+. . +...+ .+.++.++...+.+.+.++++....+.
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 257889999999988743221 1 11222 224667777777776778777655443
No 75
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.50 E-value=5.2e-12 Score=108.03 Aligned_cols=155 Identities=15% Similarity=0.214 Sum_probs=112.8
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL---D-VWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC 75 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 75 (297)
||. .+||+|||+|.||.+++..|+++|+ + ++++++ ++++++.+.+ +.+ +..
T Consensus 1 ~m~-~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~-------------~~~ 56 (245)
T PRK07634 1 MLK-KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA----------RYN-------------VST 56 (245)
T ss_pred CCC-CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH----------HcC-------------cEE
Confidence 654 4689999999999999999998873 3 677887 4665554411 112 134
Q ss_pred ecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCce-E
Q 022434 76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-V 153 (297)
Q Consensus 76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-v 153 (297)
+++.++ ++++|+||.++|... ..+++.++.+..+ +.+|+|.+.+++++.+.+.++...+++..||..|..+... .
T Consensus 57 ~~~~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~ 133 (245)
T PRK07634 57 TTDWKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSIS 133 (245)
T ss_pred eCChHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCe
Confidence 456655 789999999999654 4677788877665 4688889999999999988765556777777555433322 2
Q ss_pred EEecCCCCcHHHHHHHHHHHHHcCCeEEE
Q 022434 154 EVIRGADTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 154 ei~~~~~~~~~~~~~~~~ll~~lg~~~i~ 182 (297)
-+......+++..+.++++|+.+|..+++
T Consensus 134 ~~~~~~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 134 LYTMGQSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 23455667899999999999999998864
No 76
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.49 E-value=1.1e-11 Score=122.04 Aligned_cols=157 Identities=22% Similarity=0.237 Sum_probs=114.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+++|+|||+|.||.+++..|.++| ++|++||+++++++.+ .+.|... ...++.++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA-----------VSLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH-----------HHCCCCC-----------cccCCHHHH
Confidence 578999999999999999999999 4899999999876654 3334311 12334443
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcC-CCCeEEEeecCCCCCC---------
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATS-RPCQVIGMHFMNPPPL--------- 149 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~-~~~~~~g~h~~~p~~~--------- 149 (297)
++++|+||+|+|.. ....+++++.+.++++++|...++.- ..+.+.+.+. .+.|+++.||+..+..
T Consensus 61 ~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 78999999999964 36788888888888887765443322 2455655543 2568999999764322
Q ss_pred ---CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434 150 ---MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 150 ---~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d 185 (297)
.+.+.++++..++++.++.++++++.+|..++++.+
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~ 177 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDV 177 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 123567777778999999999999999998888743
No 77
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.48 E-value=7.9e-13 Score=121.63 Aligned_cols=177 Identities=17% Similarity=0.229 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCChhhhcccCCCcEEecCccc-cC---CCcEEEE
Q 022434 16 MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSK-GQLSQAVGTDAPRRLRCTSNLKD-LH---SADIIVE 90 (297)
Q Consensus 16 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~~-~~---~aD~Vi~ 90 (297)
||..||.+|+++||+|++|||++++.+.+ ++. |. ...+....++++ ++ .+|+||.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l-----------~~~~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~ 60 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEF-----------LAEEGK---------GKKIVPAYTLEEFVASLEKPRKILL 60 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHH-----------HHhhCC---------CCCeEeeCCHHHHHhhCCCCCEEEE
Confidence 89999999999999999999999988876 331 21 012346677776 43 4899999
Q ss_pred eccccHHHHHHHHHHHHhhcCCCeEEE-ecCCCCcH-HHHhhhcCCCCeEEEeecCCCCCCCc-------eEEEecCCCC
Q 022434 91 AIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK-------LVEVIRGADT 161 (297)
Q Consensus 91 ~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~-------~vei~~~~~~ 161 (297)
|+|.+..+.. ++..+.+.+.++.||+ .+|+.+.. .+..+.+. -.|+||++.| +++ ...+++| +
T Consensus 61 mv~~g~~v~~-Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~----~~Gi~fvdap-VSGG~~gA~~G~siM~G--G 132 (459)
T PRK09287 61 MVKAGAPVDA-VIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELA----EKGIHFIGMG-VSGGEEGALHGPSIMPG--G 132 (459)
T ss_pred ECCCchHHHH-HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCeEEecC-CCCCHHHHhcCCEEEEe--C
Confidence 9999877554 5567777776666555 33444333 34444432 2356666655 222 1256666 8
Q ss_pred cHHHHHHHHHHHHHcCCeE-------EEeccc-hh---hhHHHHH-H---HHHHHHHHHHHc-CCCCHHHHHHHH
Q 022434 162 SDETFRATKALAERFGKTV-------VCSQDY-AG---FIVNRIL-M---PMINEAFFTLYT-GVATKEDIDAGM 220 (297)
Q Consensus 162 ~~~~~~~~~~ll~~lg~~~-------i~v~d~-~g---~i~nri~-~---~~~~Ea~~l~~~-g~~~~~~id~a~ 220 (297)
++++++.++++|+.++.++ .++++. .| .++++.+ . ..+.|++.++++ .+.+++++-.++
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999887 788763 22 2455543 3 457899999994 568898887777
No 78
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.47 E-value=1.6e-11 Score=105.68 Aligned_cols=157 Identities=21% Similarity=0.210 Sum_probs=104.6
Q ss_pred cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022434 6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV 65 (297)
Q Consensus 6 ~~I~viG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 65 (297)
+||.|.|+|+. |.+||.+|+++||+|++||+++++.+.. .++.+.+.|.
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e------~~e~LaeaGA----- 69 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDD------LWKKVEDAGV----- 69 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhh------hhHHHHHCCC-----
Confidence 47889998863 8899999999999999999998765321 1122355564
Q ss_pred hcccCCCcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhc----CCCCeEEE
Q 022434 66 GTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT----SRPCQVIG 140 (297)
Q Consensus 66 ~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~----~~~~~~~g 140 (297)
..+++..+ +++||+||.|+|++..++. ++..+.+.++++++|+ ++||+++..+...+ ....+-+|
T Consensus 70 --------~~AaS~aEAAa~ADVVIL~LPd~aaV~e-Vl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~ 139 (341)
T TIGR01724 70 --------KVVSDDKEAAKHGEIHVLFTPFGKGTFS-IARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVG 139 (341)
T ss_pred --------eecCCHHHHHhCCCEEEEecCCHHHHHH-HHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccC
Confidence 34555554 8899999999998776544 4566777778888776 56666665433332 22223344
Q ss_pred eecCCCCC--CCce--EEEecC------CCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434 141 MHFMNPPP--LMKL--VEVIRG------ADTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 141 ~h~~~p~~--~~~~--vei~~~------~~~~~~~~~~~~~ll~~lg~~~i~v 183 (297)
+..|.|.. -++. .-++.+ .-.+++.++++.++.+..++.++.+
T Consensus 140 v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 140 ISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred eeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 44444431 1111 112222 2257899999999999999999876
No 79
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.45 E-value=1.9e-14 Score=131.98 Aligned_cols=158 Identities=15% Similarity=0.213 Sum_probs=116.8
Q ss_pred cEEEEECCChhHHHHHH--HH----HHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434 6 KVMGVVGSGQMGSGIAQ--LG----VMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~--~l----~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
.||+|||+|.||.+++. .+ +.+|++|++||+++++++.....+++.+.. .. ...++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~----~~--------~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEE----LG--------APLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHh----cC--------CCeEEEEeCCH
Confidence 37999999999998666 23 556889999999999988876665444332 11 12456778886
Q ss_pred c-ccCCCcEEEEecc----------ccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCC--CCeEEEeecCCC
Q 022434 80 K-DLHSADIIVEAIV----------ESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSR--PCQVIGMHFMNP 146 (297)
Q Consensus 80 ~-~~~~aD~Vi~~v~----------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~--~~~~~g~h~~~p 146 (297)
+ ++++||+||++++ +...+|..+++++.+.+++++++.+++|...+.++++.+.. | +.+.+||.||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 5 4899999999998 34778888999999999999999999999888888887753 5 7899999999
Q ss_pred CCCC-----ceE--EEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434 147 PPLM-----KLV--EVIRGADTSDETFRATKALAERFGKT 179 (297)
Q Consensus 147 ~~~~-----~~v--ei~~~~~~~~~~~~~~~~ll~~lg~~ 179 (297)
+..+ +.. .++.. ..........+.+.+|..
T Consensus 148 v~i~t~~~~k~~~~rviG~---c~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 148 MAELTWALNRYTPIKTVGL---CHGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHHhCCCCEEEE---CCcHHHHHHHHHHHhCCC
Confidence 8644 222 23322 222455555666777764
No 80
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.45 E-value=4e-13 Score=130.72 Aligned_cols=86 Identities=24% Similarity=0.400 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022434 188 GFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL 263 (297)
Q Consensus 188 g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~ 263 (297)
..+.||++.+++|||++++++|+ ++++|||.++++|+|||+ |||+++|.+|++.+..+++.+. .+++ +|+|+++
T Consensus 625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~-~~~p~~~ 702 (715)
T PRK11730 625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGP-LYQVPEG 702 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCC-CCCCCHH
Confidence 46999999999999999999996 899999999999999997 9999999999999999999764 5665 8999999
Q ss_pred HHHHHHcCCCCcccCCccc
Q 022434 264 LVQYVDAGRLGKKRGIGVF 282 (297)
Q Consensus 264 l~~~~~~g~~G~~~g~Gfy 282 (297)
|++|+++| ++||
T Consensus 703 L~~~v~~~-------~~f~ 714 (715)
T PRK11730 703 LREMAANG-------ESYY 714 (715)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999876 4686
No 81
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.45 E-value=1.9e-12 Score=114.35 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=110.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
+.++|+|||+|.||++||..|+.+||+|++|+|++. .++++ +
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~ 45 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVL 45 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHH
Confidence 346899999999999999999999999999999853 11222 5
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhh-cCCCeEEEecCCCCcHH------H-HhhhcCCCCeEEEeecCCCCC------
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISIT------R-LASATSRPCQVIGMHFMNPPP------ 148 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~~------~-l~~~~~~~~~~~g~h~~~p~~------ 148 (297)
+++|+||.++|.. ..+.++.++... +++++++++.++++.+. + +...+.. .++.. +..|..
T Consensus 46 ~~advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~ 120 (308)
T PRK14619 46 ADADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQ 120 (308)
T ss_pred hcCCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhc
Confidence 6899999999974 356677778664 67788887776655432 1 1112111 12211 112211
Q ss_pred CCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-h--------------------hHHHH----HHHHHHHHH
Q 022434 149 LMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-F--------------------IVNRI----LMPMINEAF 203 (297)
Q Consensus 149 ~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-~--------------------i~nri----~~~~~~Ea~ 203 (297)
..+..-++.+ .+++.++.++++|...+.++++..|..| . +.++. +...++|+.
T Consensus 121 ~~~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~ 198 (308)
T PRK14619 121 GLPAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMI 198 (308)
T ss_pred CCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 0112223333 6889999999999999988887666433 1 22222 234568999
Q ss_pred HHHHcCCCCHHHH
Q 022434 204 FTLYTGVATKEDI 216 (297)
Q Consensus 204 ~l~~~g~~~~~~i 216 (297)
.+++.-+.+++.+
T Consensus 199 ~l~~~~G~~~~t~ 211 (308)
T PRK14619 199 RVGTHLGAQTETF 211 (308)
T ss_pred HHHHHhCCCcccc
Confidence 9998766776655
No 82
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.44 E-value=5e-13 Score=129.75 Aligned_cols=84 Identities=30% Similarity=0.471 Sum_probs=76.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcH
Q 022434 187 AGFIVNRILMPMINEAFFTLYTG-VATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCP 262 (297)
Q Consensus 187 ~g~i~nri~~~~~~Ea~~l~~~g-~~~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~ 262 (297)
...|+||++.+++||+++++++| +++++|||.++.+|+|||+ |||+++|.+|++.+...++.+. .+++ +|+|++
T Consensus 624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~-~~~p~~ 701 (714)
T TIGR02437 624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGA-LYQVTA 701 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCC-CCCCCH
Confidence 34699999999999999999999 6789999999999999997 9999999999999999999654 7776 899999
Q ss_pred HHHHHHHcCC
Q 022434 263 LLVQYVDAGR 272 (297)
Q Consensus 263 ~l~~~~~~g~ 272 (297)
+|.+|+++|+
T Consensus 702 ~l~~~~~~g~ 711 (714)
T TIGR02437 702 KLREMAKNGQ 711 (714)
T ss_pred HHHHHHHcCC
Confidence 9999998763
No 83
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.42 E-value=3.9e-11 Score=103.44 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=105.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+|||+|+||.+|+..|.++|. +++++|+++++. + +....+..+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~-------------~~~~~~~~~ 53 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P-------------FVYLQSNEE 53 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C-------------eEEeCChHH
Confidence 589999999999999999999873 499999886431 1 023334443
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCce-EEEecCC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-VEVIRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-vei~~~~ 159 (297)
++++|+||.|++.. ....++.++.+..+++ +|+|...+++.+.+...++...+++.+.|..|..+... .-+.++.
T Consensus 54 ~~~~~D~Vilavkp~--~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~ 130 (260)
T PTZ00431 54 LAKTCDIIVLAVKPD--LAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANN 130 (260)
T ss_pred HHHhCCEEEEEeCHH--HHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCC
Confidence 67899999999743 3667888888776654 56778889998888887654444555555555544443 3455666
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEE
Q 022434 160 DTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 160 ~~~~~~~~~~~~ll~~lg~~~i~ 182 (297)
..+++..+.++.+|+.+|...++
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEE
Confidence 67888899999999999997765
No 84
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=5.9e-12 Score=112.59 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=100.2
Q ss_pred CcEEEEECC-ChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-c
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-D 81 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 81 (297)
.++|+|||. |.||.++|..|.+ .|++|+.+|++.+ ...+.+ .
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------------------------------~~~~~~~~ 48 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------------------------------GSLDPATL 48 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------------------------------ccCCHHHH
Confidence 479999999 9999999999986 4899999998521 112333 3
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhh---cCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCCCCce----
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKI---TKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLMKL---- 152 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~---~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~~~---- 152 (297)
+++||+||.|+|... ..+++.++.+. ++++++|...+|.-. .+.+. ....+|+|.||+..|...++
T Consensus 49 v~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~---~~~~~fVG~HPMaG~E~s~lf~g~ 123 (370)
T PRK08818 49 LQRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAML---ASQAEVVGLHPMTAPPKSPTLKGR 123 (370)
T ss_pred hcCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHHH---hcCCCEEeeCCCCCCCCCcccCCC
Confidence 789999999999654 55788888775 688998876555442 23332 22346999999987754332
Q ss_pred -EEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 153 -VEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 153 -vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
+-+++. ..++.+++++++++.+|.+++.+.
T Consensus 124 ~~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 124 VMVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred eEEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 223443 455667889999999999998774
No 85
>PLN02712 arogenate dehydrogenase
Probab=99.41 E-value=8.6e-12 Score=120.03 Aligned_cols=154 Identities=18% Similarity=0.126 Sum_probs=106.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
+.++|+|||+|.||.++|..|.+.|++|++||++... +.+ .+.|. ...++.++ +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~Gv-------------~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLGV-------------SYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcCC-------------eEeCCHHHHH
Confidence 3579999999999999999999999999999998542 222 22332 23455555 4
Q ss_pred C-CCcEEEEeccccHHHHHHHHHHHHh-hcCCCeEEEecCCC--CcHHHHhhhcCCCCeEEEeecCCCCCCC--c---eE
Q 022434 83 H-SADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPPLM--K---LV 153 (297)
Q Consensus 83 ~-~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~~~--~---~v 153 (297)
+ .+|+||.|+|.. ....++.++.. .+++++++++.+|+ .+.+.+...++...++++.||+.++... + ..
T Consensus 423 ~~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 589999999953 34566777654 56778888866665 3445666655555579999999887643 1 11
Q ss_pred -----EEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 154 -----EVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 154 -----ei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
-++.+.....+.++.+.++++.+|.+++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 1122333344566777799999999998774
No 86
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.40 E-value=1.6e-12 Score=103.43 Aligned_cols=104 Identities=25% Similarity=0.435 Sum_probs=77.9
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCccc-cCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
||+|||+|.||.++|..|+.+|++|++|.++++.++.+.+. +.... ........++.+++|+++ +++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~-----------~~n~~~~~~~~l~~~i~~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET-----------RQNPKYLPGIKLPENIKATTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH-----------TSETTTSTTSBEETTEEEESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh-----------CCCCCCCCCcccCcccccccCHHHHhCc
Confidence 79999999999999999999999999999999877765321 11000 001223356788899876 899
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
+|+||.++|... .+.+++++.+++++++++++.+.++
T Consensus 70 ad~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 70 ADIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred ccEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999766 5689999999999999888888776
No 87
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.39 E-value=1.1e-11 Score=104.05 Aligned_cols=163 Identities=16% Similarity=0.198 Sum_probs=103.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
|+|+||| +|.||.++|..|+++||+|++++|++++++...+...+ .+...|. ..++..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g~---------~~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGGS---------DIKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccCC---------CceEEEeChHHHHhc
Confidence 4799997 89999999999999999999999999887665332111 1111111 011222333345889
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-----------------HHHhhhcCCCCeEEEeecCCCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-----------------TRLASATSRPCQVIGMHFMNPP 147 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------------~~l~~~~~~~~~~~g~h~~~p~ 147 (297)
+|+||.|+|... ..+++.++...+++ ++|++.+.+++. +.+++.++...+++..-...+.
T Consensus 69 aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998644 45666777665554 677766666654 3455555432565554332221
Q ss_pred CC-------CceEEEecCCCCcHHHHHHHHHHHHHc-CCeEEEecc
Q 022434 148 PL-------MKLVEVIRGADTSDETFRATKALAERF-GKTVVCSQD 185 (297)
Q Consensus 148 ~~-------~~~vei~~~~~~~~~~~~~~~~ll~~l-g~~~i~v~d 185 (297)
.. .+....+.| -++++.+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~G--dd~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCG--DDEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEEC--CCHHHHHHHHHHHHhcCCCCcccCCc
Confidence 11 111223444 3577888899999999 999987764
No 88
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.39 E-value=1.8e-12 Score=98.41 Aligned_cols=114 Identities=21% Similarity=0.308 Sum_probs=75.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
..||+|||+|++|..++..|.++||+|..+ .|+++..+++... .....+ .++++ +
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~-~~~~~~~ 66 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAI-LDLEEIL 66 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT------TTGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------cccccc-ccccccc
Confidence 468999999999999999999999999855 7887766655211 111123 33444 8
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhh--cCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeec
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKI--TKASAILASNTSSISITRLASATSRPCQVIGMHF 143 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~ 143 (297)
+++|++|.++|++. ...+.++|... ..++.+++.++...+.+.+............+||
T Consensus 67 ~~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 67 RDADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp CC-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred ccCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 89999999999985 56788888876 6788999988777777777666555667777875
No 89
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.38 E-value=2.4e-12 Score=104.85 Aligned_cols=107 Identities=18% Similarity=0.286 Sum_probs=72.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI--------SSSIQKFVSKGQLSQAVGTDAPRRLRCTS 77 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (297)
|||+|||+|++|..+|..|+++||+|+.+|.++++++.+.+.. ...+.+.++ .+++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence 5899999999999999999999999999999999888764321 222222222 35678888
Q ss_pred Cccc-cCCCcEEEEecccc--------HHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434 78 NLKD-LHSADIIVEAIVES--------EDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 78 ~~~~-~~~aD~Vi~~v~e~--------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
+.++ +++||++|.|||.+ ......+.+.|.+.++++.+|+ .-|++++
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvpp 124 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPP 124 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSST
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEE
Confidence 8887 89999999999864 3345667778888888877665 3444443
No 90
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.37 E-value=1.3e-11 Score=107.05 Aligned_cols=165 Identities=22% Similarity=0.346 Sum_probs=114.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.+|.++|..|+++||+|++|.|+++..++..+. +.+ .+++. |. ....++.+++|+++ +++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N-~~yLp-~i-------~lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-REN-PKYLP-GI-------LLPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcC-ccccC-Cc-------cCCcccccccCHHHHHhc
Confidence 689999999999999999999999999999999988776433 111 11111 11 23466778899887 778
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH------HHH-hhhcCCCCeEEEeecCCCCCCC-------
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI------TRL-ASATSRPCQVIGMHFMNPPPLM------- 150 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~------~~l-~~~~~~~~~~~g~h~~~p~~~~------- 150 (297)
||+|+.++|... ..++++++...+++++++++.+.++.. +++ .+.++. .. +-++..|+..
T Consensus 72 ad~iv~avPs~~--~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~-~~---~~vLSGPs~A~EVa~g~ 145 (329)
T COG0240 72 ADIIVIAVPSQA--LREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD-NP---IAVLSGPSFAKEVAQGL 145 (329)
T ss_pred CCEEEEECChHH--HHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCC-Ce---EEEEECccHHHHHhcCC
Confidence 999999999654 678888888888899998888877654 233 333331 12 1223334321
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
+..-++.+ .+++..+.++.+|..--.+++...|..|
T Consensus 146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 12222333 6888888888888886667777777665
No 91
>PLN02712 arogenate dehydrogenase
Probab=99.36 E-value=1.5e-10 Score=111.60 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=103.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c-
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L- 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 82 (297)
.++|+|||+|.||..+|..|.+.|++|++||++... +.+ .+.|. ...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A-----------~~~Gv-------------~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAA-----------RSLGV-------------SFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHH-----------HHcCC-------------EEeCCHHHHhh
Confidence 468999999999999999999999999999998543 222 22332 23455555 3
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHH-hhcCCCeEEEecCCCCc--HHHHhhhcCCCCeEEEeecCCCCCCC-----ceEE
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELD-KITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLM-----KLVE 154 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~-~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~-----~~ve 154 (297)
+++|+||.|+|.. ....++.++. +.++++++|+..+|.-. ...+...++...++++.||+..|... ....
T Consensus 107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 4699999999954 3566777775 55778888775544332 24455555444579999998877521 1111
Q ss_pred Eec----C-CCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 155 VIR----G-ADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 155 i~~----~-~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
+.. + .....+.++++.++++.+|.+++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 221 2 22234567778899999999998874
No 92
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.35 E-value=5.5e-12 Score=111.49 Aligned_cols=127 Identities=21% Similarity=0.318 Sum_probs=92.4
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
+.+||+|||+|.||..+|..++..|+ +|+++|++++.++.- .++..... .......++..+++++++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~------~ld~~~~~------~~~~~~~~I~~~~d~~~l 72 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGK------ALDISHSN------VIAGSNSKVIGTNNYEDI 72 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHH------HHHHHhhh------hccCCCeEEEECCCHHHh
Confidence 34799999999999999999999996 999999999865321 11111110 011122356666888889
Q ss_pred CCCcEEEEec-------------------cccHHHHHHHHHHHHhhcCCC-eEEEecCCCCcHHHHhhhcCCC-CeEEEe
Q 022434 83 HSADIIVEAI-------------------VESEDVKKKLFSELDKITKAS-AILASNTSSISITRLASATSRP-CQVIGM 141 (297)
Q Consensus 83 ~~aD~Vi~~v-------------------~e~~~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~~~~~-~~~~g~ 141 (297)
++||+||++. .++..+++++..++.+.+++. .+++||++.+....+......| .|++|+
T Consensus 73 ~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGl 152 (321)
T PTZ00082 73 AGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGM 152 (321)
T ss_pred CCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEe
Confidence 9999999955 456677888889999998764 4667888887777777666554 678776
Q ss_pred e
Q 022434 142 H 142 (297)
Q Consensus 142 h 142 (297)
+
T Consensus 153 g 153 (321)
T PTZ00082 153 A 153 (321)
T ss_pred c
Confidence 5
No 93
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.34 E-value=2.4e-10 Score=100.56 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=108.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|+|||+|+||.++|..|..+|++|+++++. .++.+.+ .+.|. ...+ .++ +
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a-----------~~~Gv-------------~~~s-~~ea~ 57 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKA-----------TEDGF-------------KVGT-VEEAI 57 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHH-----------HHCCC-------------EECC-HHHHH
Confidence 368999999999999999999999998876554 3333333 22332 2333 444 7
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCC-------CceE-E
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL-------MKLV-E 154 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~-------~~~v-e 154 (297)
++||+|+.++|+... ...+.+++.+.++++. +++-..++++..+...++...+++-+.|..|.+. ...+ -
T Consensus 58 ~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~ 135 (314)
T TIGR00465 58 PQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPT 135 (314)
T ss_pred hcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeE
Confidence 899999999997634 4466677877777776 5567788888888777655557888888888863 4433 3
Q ss_pred Ee-cCCCCcHHHHHHHHHHHHHcCCe
Q 022434 155 VI-RGADTSDETFRATKALAERFGKT 179 (297)
Q Consensus 155 i~-~~~~~~~~~~~~~~~ll~~lg~~ 179 (297)
++ .+...+.+..+.+..+++.+|..
T Consensus 136 l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 136 LIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 43 56667888999999999999997
No 94
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.33 E-value=1.9e-09 Score=95.49 Aligned_cols=179 Identities=13% Similarity=0.198 Sum_probs=109.2
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCc
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNL 79 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~ 79 (297)
|-+..++|+|||+|.||+.+|..|+++|++|+++.|++. +.. .+.|.... ...+.....+...++.
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~ 67 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAV-----------RENGLQVDSVHGDFHLPPVQAYRSA 67 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHH-----------HhCCeEEEeCCCCeeecCceEEcch
Confidence 545668999999999999999999999999999999863 222 22231100 0000011123344555
Q ss_pred cccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEE-EeecC-----CCCCCC--
Q 022434 80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFM-----NPPPLM-- 150 (297)
Q Consensus 80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~-----~p~~~~-- 150 (297)
++...+|+||.|++... ..+++..+.+.+.++++|++...++.. +.+.+.++. .+++ ++.++ .|..+.
T Consensus 68 ~~~~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~ 144 (313)
T PRK06249 68 EDMPPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHL 144 (313)
T ss_pred hhcCCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEEC
Confidence 55778999999998654 246777888888888888878888876 456555543 3433 33332 222100
Q ss_pred --ceEEEecCCCCc-----HHHHHHHHHHHHHcCCeEEEeccchhhhHHHHH
Q 022434 151 --KLVEVIRGADTS-----DETFRATKALAERFGKTVVCSQDYAGFIVNRIL 195 (297)
Q Consensus 151 --~~vei~~~~~~~-----~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~ 195 (297)
+.+.+-...+.+ .+..+.+..+|+..|..+....|....++..++
T Consensus 145 ~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 196 (313)
T PRK06249 145 AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV 196 (313)
T ss_pred CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence 011111111122 456677788888888887777776655444443
No 95
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.29 E-value=3e-10 Score=101.73 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=109.1
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hh-hcccCCCcEEecCccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AV-GTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~i~~~~~~~~ 81 (297)
..++|+|||+|.||+.+|..|+++| +|++|.++++..+...+ .+.... .. ......++..+++.++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~~~l~~~i~~t~d~~~ 73 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGNDVVLSDTLRATTDFAE 73 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCCcccCCCeEEECCHHH
Confidence 4579999999999999999999999 78999999987766532 221000 00 0112245667777765
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-------HHHhhhcCCCCeEEEeecCCCCCC----
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPL---- 149 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~---- 149 (297)
++++|+||.++|.. ....+++++.+.+++++++++.+.+++. +.+.+.++. .++.. ...|-..
T Consensus 74 a~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~--l~GP~~a~ev~ 148 (341)
T PRK12439 74 AANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI--LAGPNIAREVA 148 (341)
T ss_pred HHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--EECCCHHHHHH
Confidence 78999999999844 3667888998888888777777777764 344444432 12111 1122211
Q ss_pred --CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 150 --MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 150 --~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
.+...++.+ .+++..+.+.++|..-+.++....|..|
T Consensus 149 ~g~~t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~g 187 (341)
T PRK12439 149 EGYAAAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVG 187 (341)
T ss_pred cCCCeEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHH
Confidence 111122222 3677888888999888888888788765
No 96
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.29 E-value=1e-11 Score=109.27 Aligned_cols=122 Identities=21% Similarity=0.305 Sum_probs=86.2
Q ss_pred EEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCc
Q 022434 8 MGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSAD 86 (297)
Q Consensus 8 I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 86 (297)
|+|||+|.||..+|..++..|+ +|+++|++++.++...-.+.+ .. .......++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~-------~~-----~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQ-------AA-----PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHH-------hh-----hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 999999998754322111111 11 0111224566667777899999
Q ss_pred EEEEec--------------cccHHHHHHHHHHHHhhcCCCe-EEEecCCCCcHHHHhhhcCC-CCeEEEe
Q 022434 87 IIVEAI--------------VESEDVKKKLFSELDKITKASA-ILASNTSSISITRLASATSR-PCQVIGM 141 (297)
Q Consensus 87 ~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~-~~~~~g~ 141 (297)
+||+++ +++..+++++++++.+.+++.. |+.+|++.+....+.+.... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 6678889999999999997776 45677776666666655443 3456654
No 97
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.1e-10 Score=92.29 Aligned_cols=187 Identities=19% Similarity=0.249 Sum_probs=125.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc----c
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK----D 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~ 81 (297)
++|+.||+|.||..|+.+|.+.||+|+.||+|++..+.+ ++.|+ +.+++++ .
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~-----------~~~ga-------------~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEEL-----------KDEGA-------------TGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HhcCC-------------ccccCHHHHHHh
Confidence 479999999999999999999999999999999988877 55553 2233332 2
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC-CcH-HHHhhhcCCCCeEEEeecCCCCCCCc-------e
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS-ISI-TRLASATSRPCQVIGMHFMNPPPLMK-------L 152 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~-~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~-------~ 152 (297)
+...-.|-.+||-. ++..+++.++.+.+..+-+|+....+ +-- ..-.+.+ .-.|+||++.- .++ .
T Consensus 57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l----~~kgi~flD~G-TSGG~~G~~~G 130 (300)
T COG1023 57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL----AEKGIHFLDVG-TSGGVWGAERG 130 (300)
T ss_pred cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH----HhcCCeEEecc-CCCCchhhhcC
Confidence 44556778888854 24678899999888776655544333 321 2222222 12467887654 221 1
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcCCeE---EEeccc-hh----hhHHHHHH---HHHHHHHHHHHcCCC--CHHHHHHH
Q 022434 153 VEVIRGADTSDETFRATKALAERFGKTV---VCSQDY-AG----FIVNRILM---PMINEAFFTLYTGVA--TKEDIDAG 219 (297)
Q Consensus 153 vei~~~~~~~~~~~~~~~~ll~~lg~~~---i~v~d~-~g----~i~nri~~---~~~~Ea~~l~~~g~~--~~~~id~a 219 (297)
--++.| +++++++.+.++|+.+...+ .++++. .| .+.|-|=. ..+.|.+.++++.-. |.+.+-+.
T Consensus 131 ~~lMiG--G~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v 208 (300)
T COG1023 131 YCLMIG--GDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV 208 (300)
T ss_pred ceEEec--CcHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 234555 69999999999999986532 355442 33 25555543 457899999998654 56778888
Q ss_pred Hhhcc
Q 022434 220 MKLGT 224 (297)
Q Consensus 220 ~~~g~ 224 (297)
++.|.
T Consensus 209 W~hGS 213 (300)
T COG1023 209 WNHGS 213 (300)
T ss_pred HhCcc
Confidence 87653
No 98
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.26 E-value=3e-10 Score=97.70 Aligned_cols=141 Identities=23% Similarity=0.308 Sum_probs=100.5
Q ss_pred HHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCCcEEEEeccccHH
Q 022434 20 IAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESED 97 (297)
Q Consensus 20 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~e~~~ 97 (297)
||..|.++| ++|+.+|++++.++.+ .+.|... ...++.+.++++|+||.|+|-+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~~DlvvlavP~~~- 57 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA-----------LELGIID-----------EASTDIEAVEDADLVVLAVPVSA- 57 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH-----------HHTTSSS-----------EEESHHHHGGCCSEEEE-S-HHH-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH-----------HHCCCee-----------eccCCHhHhcCCCEEEEcCCHHH-
Confidence 578899999 7899999999988776 5677654 23333556899999999998544
Q ss_pred HHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCCCeEEEeecCCCCCC------------CceEEEecCCCCcH
Q 022434 98 VKKKLFSELDKITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPL------------MKLVEVIRGADTSD 163 (297)
Q Consensus 98 ~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~------------~~~vei~~~~~~~~ 163 (297)
...++.++.+.++++++|...+|.- ....+.+.+....++++.||+..|.. ...+-++++..+++
T Consensus 58 -~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 58 -IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp -HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred -HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 6688999999899999887655543 23556666555678999999887721 22466788888889
Q ss_pred HHHHHHHHHHHHcCCeEEEec
Q 022434 164 ETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 164 ~~~~~~~~ll~~lg~~~i~v~ 184 (297)
+.++.+.++++.+|.+++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999998763
No 99
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.26 E-value=3.9e-10 Score=99.57 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=100.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..|+++|++|+++++ ++..+.. .+.|.................++.++ .+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKAL-----------RERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHH-----------HhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 4799999999999999999999999999999 6666554 22231100000000001123445555 488
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEE-EeecCCCCCCCc-eEE------E
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFMNPPPLMK-LVE------V 155 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~~p~~~~~-~ve------i 155 (297)
+|+||.|++... ...++.++.+...++++|++...++.. +.+.+.++. .+++ ++.++......+ .+. +
T Consensus 69 ~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 999999998653 346777888877888877777777764 455555432 2333 333322111111 111 2
Q ss_pred ecC--CCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 156 IRG--ADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 156 ~~~--~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
..| +....+..+.+..+|...|..+....|...
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 180 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ 180 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence 222 223345666777788888876666666543
No 100
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.26 E-value=3.3e-10 Score=101.01 Aligned_cols=168 Identities=15% Similarity=0.202 Sum_probs=100.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c-C
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L-H 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-~ 83 (297)
|+|+|||+|.||..+|..|+++|++|++|+|+++.++...+. ..+. ..........++..+++.++ + .
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~-~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNL-KYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCc-ccCCCCcCCCCeEEeCCHHHHHhC
Confidence 379999999999999999999999999999998876655221 0010 00000111234556667665 4 5
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHh-hcCCCeEEEecCCCCcH-------HHHhhhcCCCCeEEEeecCCCCCC-----C
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPL-----M 150 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~-----~ 150 (297)
++|+||.++|... ..++++++.+ .+++++.+++.++++.. +.+.+.++.. ++. .+..|.. .
T Consensus 71 ~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~---~~~Gp~~a~~~~~ 144 (326)
T PRK14620 71 NATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIA---ILSGPSFAKEIAE 144 (326)
T ss_pred CCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceE---eecCCcHHHHHHc
Confidence 8999999998654 5577888887 77777766656666643 3344444321 211 1112210 0
Q ss_pred ce-EEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhh
Q 022434 151 KL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFI 190 (297)
Q Consensus 151 ~~-vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i 190 (297)
+. ..+.. .+.+.+..+.+.++|..-+.++....|..|..
T Consensus 145 ~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~ 184 (326)
T PRK14620 145 KLPCSIVL-AGQNETLGSSLISKLSNENLKIIYSQDIIGVQ 184 (326)
T ss_pred CCCcEEEE-ecCCHHHHHHHHHHHCCCCeEEEecCcchhhh
Confidence 11 11111 12345556666666666666666667776643
No 101
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.25 E-value=3.2e-11 Score=106.75 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=89.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+||+|||+|.||..+|..++..| .+++++|++++.++...-...+ .. .......++..++++++++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~--------~~----~~~~~~~~i~~~~d~~~l~ 72 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKH--------FS----TLVGSNINILGTNNYEDIK 72 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhh--------hc----cccCCCeEEEeCCCHHHhC
Confidence 469999999999999999999999 6999999998765422111110 00 0011123555567888899
Q ss_pred CCcEEEEec--cccH------------HHHHHHHHHHHhhcCCC-eEEEecCCCCcHHHHhhhcCCC-CeEEEee
Q 022434 84 SADIIVEAI--VESE------------DVKKKLFSELDKITKAS-AILASNTSSISITRLASATSRP-CQVIGMH 142 (297)
Q Consensus 84 ~aD~Vi~~v--~e~~------------~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~~~~~-~~~~g~h 142 (297)
+||+||++. |... .+++++..++.+++++. .++++|++.+....+.+....| .+++|++
T Consensus 73 ~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 73 DSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 999999998 5555 67888888999998766 4556787776666666655554 6777765
No 102
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.25 E-value=1.2e-10 Score=94.59 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=100.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+|+++|+|+|+||.++|.+|+++||+|++-.++ +++++...+.+ ..+++..+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence 468999999999999999999999999999654 44454442221 12234455555688
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC----------------cH-HHHhhhcCCCCeEE-EeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI----------------SI-TRLASATSRPCQVI-GMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~----------------~~-~~l~~~~~~~~~~~-g~h~~~ 145 (297)
.+|+||.+||-.. ...+.+++..... +.|+++.|..+ +. +.+++.++.. +++ .+|-+.
T Consensus 60 ~aDVVvLAVP~~a--~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVPFEA--IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEeccHHH--HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999544 5578888887766 56666555542 11 2344444433 322 222211
Q ss_pred C------CCC-CceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEecc
Q 022434 146 P------PPL-MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 146 p------~~~-~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d 185 (297)
+ +.. .+..-.+.| -+.++.+.+.++.+.+|..++.++.
T Consensus 136 a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 1 111 122334444 5788999999999999999998765
No 103
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.24 E-value=4.5e-11 Score=105.65 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=77.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
++||+|||+|.||..+|..++..|+ +|+++|+++++++.....+.+. .. ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~-------~~-----~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA-------AP-----VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh-------hh-----hcCCCcEEEeCCCHHHHC
Confidence 4699999999999999999999876 9999999988654321111111 00 011224566667787799
Q ss_pred CCcEEEEec--------------cccHHHHHHHHHHHHhhcCCCe-EEEecCCCCcHHHH
Q 022434 84 SADIIVEAI--------------VESEDVKKKLFSELDKITKASA-ILASNTSSISITRL 128 (297)
Q Consensus 84 ~aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~l 128 (297)
+||+||+++ .++..+++++++++.+.+++.. |+.+|++.+-...+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~ 129 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA 129 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH
Confidence 999999986 2455778888899999886653 34455544433333
No 104
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.23 E-value=7.3e-10 Score=97.72 Aligned_cols=167 Identities=15% Similarity=0.120 Sum_probs=99.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
++|+|||+|.||..+|..|+++|++|++++++++..+... +.|... .. .....++...++.++++.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~g~~~-~~-~~~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-----------ENGLRL-ED-GEITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-----------HcCCcc-cC-CceeecccCCCChhHcCCC
Confidence 4799999999999999999999999999999887665542 223210 00 0011112233444446889
Q ss_pred cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeec-----CCCCC---CC-ceEEE
Q 022434 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHF-----MNPPP---LM-KLVEV 155 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~-----~~p~~---~~-~~vei 155 (297)
|+||.+++... ...++.++.+.+.++++|++...++.. +.+.+.+....-+.+..+ ..|-. .. +.+.+
T Consensus 68 d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~i 145 (304)
T PRK06522 68 DLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKI 145 (304)
T ss_pred CEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEE
Confidence 99999998653 457788888888888777777777764 455554432222222222 12211 11 11112
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 156 IRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
-. ...+.+..+.+.++|...|.......|...
T Consensus 146 g~-~~~~~~~~~~l~~~l~~~~~~~~~~~di~~ 177 (304)
T PRK06522 146 GE-PDGESAAAEALADLLNAAGLDVEWSPDIRT 177 (304)
T ss_pred eC-CCCCcHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 11 112224466677778877766555555433
No 105
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.22 E-value=6.1e-11 Score=86.25 Aligned_cols=89 Identities=22% Similarity=0.424 Sum_probs=65.4
Q ss_pred EEEEECCChhHHHHHHHHHHCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec-Cccc
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDG---LDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS-NLKD 81 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G---~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~ 81 (297)
||+|||+|+||.+|+..|.++| ++|.++ +++++++++..+. .+ +.+.. +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-------------~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-------------VQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-------------TEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-------------cccccCChHH
Confidence 7999999999999999999999 999966 9999988776321 11 12333 4444
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
++.+|+||.|+|... ..+++.++ ....++.+++|.+.
T Consensus 58 ~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 58 AAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEEST
T ss_pred hhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeCC
Confidence 788999999998654 55788888 55566777776543
No 106
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.19 E-value=5.5e-09 Score=86.45 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=110.4
Q ss_pred cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022434 6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAV 65 (297)
Q Consensus 6 ~~I~viG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 65 (297)
++|+|.|+|+. |+.||..|+.+||+|++.|+|.+-.+.. .+++..+.|.
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAGV----- 70 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAGV----- 70 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcCc-----
Confidence 58999999863 7889999999999999999987765542 4555566665
Q ss_pred hcccCCCcEE-ecCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH----HHhhhcCCCCeEEE
Q 022434 66 GTDAPRRLRC-TSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT----RLASATSRPCQVIG 140 (297)
Q Consensus 66 ~~~~~~~i~~-~~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~----~l~~~~~~~~~~~g 140 (297)
.+ ++|.+.++.+++.+...|-... .-.+.++|.++++++++|+ ||.+.++- .+...+..+.+-+|
T Consensus 71 --------~vv~dD~eaa~~~Ei~VLFTPFGk~-T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVG 140 (340)
T COG4007 71 --------EVVSDDAEAAEHGEIHVLFTPFGKA-TFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVG 140 (340)
T ss_pred --------EEecCchhhhhcceEEEEecccchh-hHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcC
Confidence 34 4555669999999999886533 3367788999999999998 66665553 34444444444566
Q ss_pred eecCCCCCCCc----eEEEecCCC------CcHHHHHHHHHHHHHcCCeEEEec
Q 022434 141 MHFMNPPPLMK----LVEVIRGAD------TSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 141 ~h~~~p~~~~~----~vei~~~~~------~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
+..+.|.-+-+ ..-++.+.. .+++.++++.++++..|+.++++.
T Consensus 141 vssmHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 141 VSSMHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccccCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC
Confidence 66665542111 111232211 367889999999999999998763
No 107
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.16 E-value=1.5e-09 Score=96.50 Aligned_cols=161 Identities=20% Similarity=0.148 Sum_probs=103.6
Q ss_pred EEEEECCChhHHHHHHHHHHCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCChhhh--cccCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDG--------LDVWLVDT-----DPDALVRATKSISSSIQKFVSKGQLSQAVG--TDAPR 71 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~ 71 (297)
||+|||+|.+|.++|..|+.+| |+|++|.+ +++-.+... ......... -....
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in------------~~~~n~~ylpgi~Lp~ 68 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIIN------------TTHENVKYLPGIKLPA 68 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHH------------hcCCCccccCCCcCCC
Confidence 5899999999999999999999 99999998 433322221 111010000 11245
Q ss_pred CcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH---------HHhhhcCCCCeEEEe
Q 022434 72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT---------RLASATSRPCQVIGM 141 (297)
Q Consensus 72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---------~l~~~~~~~~~~~g~ 141 (297)
++.+++|+++ +++||+||.++|... ...++.++.++++++.++++.+.++..+ .+.+.+.. ++
T Consensus 69 ~i~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~--- 141 (342)
T TIGR03376 69 NLVAVPDLVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PC--- 141 (342)
T ss_pred CeEEECCHHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--Ce---
Confidence 6788889876 799999999999654 6678888988888888888887776543 22233322 11
Q ss_pred ecCCCCCCC-------ceEEEecCCCCc----HHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 142 HFMNPPPLM-------KLVEVIRGADTS----DETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 142 h~~~p~~~~-------~~vei~~~~~~~----~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
-.+..|... +..-++.+ .+ .+..+.++.+|..--.+++...|..|
T Consensus 142 ~~lsGP~~A~Eva~~~pt~~~ia~--~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 142 GVLSGANLANEVAKEKFSETTVGY--RDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred EEeeCcchHHHHHcCCCceEEEEe--CCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 112333211 11222333 34 78888888888765556666677655
No 108
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.15 E-value=3.3e-08 Score=86.97 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=139.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
+||+|+|+|.||+.++..|+++|++|+++.|++. +++. .+.|..-.............+.+.+....+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l-----------~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEAL-----------KKKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHH-----------HhCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999999999998876 5554 344432111111111112233444557789
Q ss_pred cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHH-HhhhcCCCCeEEEeecCCCCCCCc---------eEEE
Q 022434 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR-LASATSRPCQVIGMHFMNPPPLMK---------LVEV 155 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-l~~~~~~~~~~~g~h~~~p~~~~~---------~vei 155 (297)
|+||.++.... ..+++..+.+.++++++|++...++...+ +....+....+.|+-+.......+ -..+
T Consensus 69 Dlviv~vKa~q--~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVKAYQ--LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEecccc--HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 99999996433 56788899999999998888888888754 555544332345554443222111 1122
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhh-----------------------------hHHHHHHHHHHHHHHHH
Q 022434 156 IRGADTSDETFRATKALAERFGKTVVCSQDYAGF-----------------------------IVNRILMPMINEAFFTL 206 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~-----------------------------i~nri~~~~~~Ea~~l~ 206 (297)
-...+..++.++.+.+.|+..+....+..|.-.. -...++...+.|+...+
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 226 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA 226 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence 2223334567888888888888777665443221 12223445567777776
Q ss_pred HcCC--CCHHHHHHHHhhccCC--CchHHHHHHhhc-----hHHHHHHHHHHHhhcC
Q 022434 207 YTGV--ATKEDIDAGMKLGTNQ--PMGPLQLADFIG-----LDVCLSIMKVLHTGLG 254 (297)
Q Consensus 207 ~~g~--~~~~~id~a~~~g~g~--p~Gp~~~~D~~G-----l~~~~~~~~~~~~~~~ 254 (297)
...+ .+.+.++......... +..|-.+.|... +|.+...+-++.+..+
T Consensus 227 ~~~g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~G~vv~~a~~~g 283 (307)
T COG1893 227 RAEGVELPEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAINGAVVRLAKKHG 283 (307)
T ss_pred HhccCCCCHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHhhHHHHHHHHhC
Confidence 6433 2444456555433222 446666666544 3444433444444433
No 109
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.12 E-value=2.7e-09 Score=95.59 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=105.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHc-CCCChhhhcccCCCcEE
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG-------LDVWLVDTDPDA-LVRATKSISSSIQKFVSK-GQLSQAVGTDAPRRLRC 75 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~ 75 (297)
.++|+|||+|.||+++|..|+.+| |+|.+|.++++. -+...+.+.+. .+. ..+. --....++..
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp---~~~Lp~ni~~ 83 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLP---GIKLPDNIVA 83 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCC---CCcCCCceEE
Confidence 468999999999999999999998 899999999752 01111111110 000 0010 1123467888
Q ss_pred ecCccc-cCCCcEEEEeccccHHHHHHHHHHHHh--hcCCCeEEEecCCCCcH--------H-HHhhhcCCCCeEEEeec
Q 022434 76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDK--ITKASAILASNTSSISI--------T-RLASATSRPCQVIGMHF 143 (297)
Q Consensus 76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~--~~~~~~ii~s~ts~~~~--------~-~l~~~~~~~~~~~g~h~ 143 (297)
++|+++ +++||+||.++|... .++++.++.+ ..++++++++.+.++.. + .+.+.+.. ++. .
T Consensus 84 tsdl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~---~ 156 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCC---A 156 (365)
T ss_pred ecCHHHHHhcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeE---E
Confidence 888876 899999999998544 6788888887 67777777777666543 2 22233322 221 1
Q ss_pred CCCCCCC-------ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 144 MNPPPLM-------KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 144 ~~p~~~~-------~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
+..|... +..-++.+ .+++..+.++++|..=-.+++...|..|
T Consensus 157 LsGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 157 LSGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred EECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 2233211 11222333 4788888888888766666666677654
No 110
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=6.1e-09 Score=91.35 Aligned_cols=195 Identities=16% Similarity=0.185 Sum_probs=128.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc---
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD--- 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 81 (297)
...||+||+|.||..+|.+.+.+||.|.+|+|+.++.+.+.+ +.+ ...+|..+.++++
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~----------~~~---------~~k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLA----------ERA---------KGKNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHH----------hCc---------cCCCccccCcHHHHHH
Confidence 357999999999999999999999999999999999988732 111 1134555666664
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC-C-cH-HHHhhhcCCCCeEEEeecCCCCC-CCceEEEe
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS-I-SI-TRLASATSRPCQVIGMHFMNPPP-LMKLVEVI 156 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~-~-~~-~~l~~~~~~~~~~~g~h~~~p~~-~~~~vei~ 156 (297)
++.---|+.+|.-. .....++.+|.+++.++-||+....+ . +. ....+.....-.|+|+-...... ......++
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiM 142 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIM 142 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcC
Confidence 45567788887554 22457788888888777666644333 2 22 22222223344677765432211 01124477
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCeE----E--Eec-cchhh----hHHHHHH---HHHHHHHHHHHc-CCCCHHHHHHHHh
Q 022434 157 RGADTSDETFRATKALAERFGKTV----V--CSQ-DYAGF----IVNRILM---PMINEAFFTLYT-GVATKEDIDAGMK 221 (297)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~lg~~~----i--~v~-d~~g~----i~nri~~---~~~~Ea~~l~~~-g~~~~~~id~a~~ 221 (297)
+| +++++++.+.++|..+..+. - +++ +..|. +.|-+=. .++.|++.++.+ .+.+.++|-..+.
T Consensus 143 pG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 143 PG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred CC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 77 89999999999999886542 2 232 33342 4554433 578999999987 4467888877764
No 111
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=99.10 E-value=4.8e-10 Score=98.61 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=67.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
+||+|||+|.||..+|..++..|+ +|+++|++++..+ ... ++. .+.+. ......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a-----~d~-~~~~~-----~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA-----LDM-YEASP-----VGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH-----Hhh-hhhhh-----ccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 8999999766432 211 010 11111 1112356777888888999
Q ss_pred CcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434 85 ADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 85 aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
||+||.+++. +..+.+++..++.+..+ +++++
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iI 115 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIV 115 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 9999999972 33445556666777754 44443
No 112
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.02 E-value=1.9e-10 Score=99.97 Aligned_cols=78 Identities=29% Similarity=0.528 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---hHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022434 188 GFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL 263 (297)
Q Consensus 188 g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~ 263 (297)
..++++++.+++|||+.+++||+. ++.++|.+..+|+|||. |||+|.|.+|++.++..|+.|.. |.|+.+
T Consensus 294 ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~------f~P~~~ 367 (380)
T KOG1683|consen 294 EDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS------FEPCQL 367 (380)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc------CCHHHH
Confidence 458999999999999999999987 59999999999999996 99999999999999999999864 899999
Q ss_pred HHHHHHcC
Q 022434 264 LVQYVDAG 271 (297)
Q Consensus 264 l~~~~~~g 271 (297)
|..+.++|
T Consensus 368 l~~~a~~~ 375 (380)
T KOG1683|consen 368 LKDHAKSG 375 (380)
T ss_pred HHHHHhhh
Confidence 99998874
No 113
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.00 E-value=8.5e-09 Score=91.66 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=81.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.++|..|...|++|.+||++++..... +....++++ +++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 689999999999999999999999999999997532110 013345555 789
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC--cHHHHhhhcCCC-CeEEEeecCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|...+.+..+.+++-+.++++++++..+-+. ....+.+.+... -...++..|.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 999999999988766666677777888898887444333 335677776532 2334555554
No 114
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.98 E-value=2.3e-08 Score=88.19 Aligned_cols=177 Identities=13% Similarity=0.042 Sum_probs=104.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
+||+|||+|.||+-+|..|+++|++|++++|+++.++..++ +.|...........-++. ..+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g~~~~~~~~-~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQGQASLYAIP-AETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCCcceeeccC-CCCccccccc
Confidence 58999999999999999999999999999998876665521 112110000000000111 1122235678
Q ss_pred cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecCC-----CCCCC--ceEEEec
Q 022434 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMN-----PPPLM--KLVEVIR 157 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~-----p~~~~--~~vei~~ 157 (297)
|+||.|+.... ..+.+..+.+.+.++++|++...++.. +.+.+.+....-+.|..++. |-.+. ..-.+..
T Consensus 72 D~viv~vK~~~--~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~ 149 (305)
T PRK05708 72 HRLLLACKAYD--AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWL 149 (305)
T ss_pred CEEEEECCHHh--HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEE
Confidence 99999996432 346678888999999988888888886 45666554322233443332 21111 0111222
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHH
Q 022434 158 GADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILM 196 (297)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~ 196 (297)
|...+ +..+.+.++|...|....+..|..+.++..++.
T Consensus 150 G~~~~-~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~ 187 (305)
T PRK05708 150 GDPRN-PTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL 187 (305)
T ss_pred cCCCC-cchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence 32222 334566667777776666666666665655554
No 115
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.96 E-value=3.6e-09 Score=91.44 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=73.5
Q ss_pred EEEECC-ChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc-cc
Q 022434 8 MGVVGS-GQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL-KD 81 (297)
Q Consensus 8 I~viG~-G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 81 (297)
|+|||+ |.||..+|..|+..| .+|+++|+++++++.....+++..... ...+++.++|. ++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777655544332211 12355667774 56
Q ss_pred cCCCcEEEE--------------eccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434 82 LHSADIIVE--------------AIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 82 ~~~aD~Vi~--------------~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+++||+||+ .+.++..+++++.+++.+.+ ++++++
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i 116 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWII 116 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence 999999999 55666778899999999998 455444
No 116
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.93 E-value=7.9e-08 Score=83.69 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=88.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||.|.||.++|.+|...|++|+++++.....+.+ .+.|. .+. ++++ ++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A-----------~~~G~-------------~v~-sl~Eaak 70 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVA-----------KADGF-------------EVM-SVSEAVR 70 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHH-----------HHcCC-------------EEC-CHHHHHh
Confidence 3789999999999999999999999999998764333222 22232 233 5555 88
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH--HHhhhcCCCCeEEEeecCCCCCCC-----------
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT--RLASATSRPCQVIGMHFMNPPPLM----------- 150 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~--~l~~~~~~~~~~~g~h~~~p~~~~----------- 150 (297)
.||+|+.++|++.. +..+..++.+.+++++++..+. +..+. .+.. +....++-+-|-.|-+..
T Consensus 71 ~ADVV~llLPd~~t-~~V~~~eil~~MK~GaiL~f~h-gfni~~~~i~p--p~~vdv~mvaPKgpG~~vR~~y~~G~Gvp 146 (335)
T PRK13403 71 TAQVVQMLLPDEQQ-AHVYKAEVEENLREGQMLLFSH-GFNIHFGQINP--PSYVDVAMVAPKSPGHLVRRVFQEGNGVP 146 (335)
T ss_pred cCCEEEEeCCChHH-HHHHHHHHHhcCCCCCEEEECC-CcceecCceeC--CCCCeEEEECCCCCChHHHHHHHcCCCce
Confidence 99999999997543 4333356778888888776432 33321 1110 111223333333332211
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434 151 KLVEVIRGADTSDETFRATKALAERFGKT 179 (297)
Q Consensus 151 ~~vei~~~~~~~~~~~~~~~~ll~~lg~~ 179 (297)
.++-|-.. .+-.+.+.+..+.+.+|..
T Consensus 147 ~l~av~qd--~sg~a~~~ala~a~~iG~~ 173 (335)
T PRK13403 147 ALVAVHQD--ATGTALHVALAYAKGVGCT 173 (335)
T ss_pred eEEEEEEC--CCCcHHHHHHHHHHHcCCC
Confidence 12333333 3445778888899999876
No 117
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.88 E-value=8.6e-08 Score=78.58 Aligned_cols=115 Identities=13% Similarity=0.180 Sum_probs=79.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++|+|||+ |.||+.++..|.++||+|++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence 48999999 99999999999999999861 26
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCc--e--EEEecCCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK--L--VEVIRGAD 160 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~--~--vei~~~~~ 160 (297)
||+||.|+|.+. ..++++++. .+++..+|.-. .+.+. ..+++|.||+..|.... + .-++..+.
T Consensus 32 ~DlVilavPv~~--~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~ 98 (197)
T PRK06444 32 ADHAFLSVPIDA--ALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFINDI 98 (197)
T ss_pred CCEEEEeCCHHH--HHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEEECCC
Confidence 899999999654 335555543 24443333322 22222 24799999988764321 1 22233566
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEec
Q 022434 161 TSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 161 ~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
++++.++.++++++ |.+++.+.
T Consensus 99 ~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 99 SRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCHHHHHHHHHHHc--CCEEEEeC
Confidence 78888999999998 77777663
No 118
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.87 E-value=2.6e-08 Score=77.73 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=61.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++ .+.|. .+.+..+.++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-----------~~~Gf-------------~v~~~~eAv~ 59 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-----------KADGF-------------EVMSVAEAVK 59 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-----------HHTT--------------ECCEHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-----------HHCCC-------------eeccHHHHHh
Confidence 47899999999999999999999999999988776 34443 55564 3333344589
Q ss_pred CCcEEEEeccccHHHHHHHH-HHHHhhcCCCeEEEe
Q 022434 84 SADIIVEAIVESEDVKKKLF-SELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s 118 (297)
.+|+|+..+|+.. ..+++ ++|.+.++++.++..
T Consensus 60 ~aDvV~~L~PD~~--q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 60 KADVVMLLLPDEV--QPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp C-SEEEE-S-HHH--HHHHHHHHHHHHS-TT-EEEE
T ss_pred hCCEEEEeCChHH--HHHHHHHHHHhhCCCCCEEEe
Confidence 9999999999765 44666 779999999887764
No 119
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.85 E-value=3.5e-08 Score=76.89 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=67.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
+||+|||+ |.+|..+|..|...++ +++++|+++++++.....+++...... ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-------------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-------------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-------------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-------------ccccccccccccc
Confidence 58999999 9999999999999885 799999998876655444443321110 0111234667789
Q ss_pred CCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434 83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
++||+||.+... +..+.+++...+.+..+ +++++.-|...
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p-~~~vivvtNPv 121 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP-DAIVIVVTNPV 121 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-TSEEEE-SSSH
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-ccEEEEeCCcH
Confidence 999999987732 12234455556777774 44444334333
No 120
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.83 E-value=7e-07 Score=76.27 Aligned_cols=129 Identities=19% Similarity=0.287 Sum_probs=94.9
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHH
Q 022434 29 LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELD 107 (297)
Q Consensus 29 ~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~ 107 (297)
++|++++|++++++.+.+ +.|. ..+.+.++ ++++|+||.|++ +. ....++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~----------~~g~-------------~~~~~~~e~~~~aDiIiLaVk-P~-~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAK----------ELGI-------------VASSDAQEAVKEADVVFLAVK-PQ-DLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHH----------HcCc-------------EEeCChHHHHhhCCEEEEEeC-HH-HHHHHHHHHh
Confidence 689999999987765411 1121 34555555 688999999998 33 3567788888
Q ss_pred hhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceE-EEecCCCCcHHHHHHHHHHHHHcCCeEEE
Q 022434 108 KITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV-EVIRGADTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 108 ~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v-ei~~~~~~~~~~~~~~~~ll~~lg~~~i~ 182 (297)
+.+.++.+|+|...+++++.+.+.++...+++.+.|..|..+...+ -+..+...+++..+.++.+|..+|...++
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v 140 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL 140 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 7666778999999999999998888654567777776665444433 34566667888899999999999987755
No 121
>PRK07574 formate dehydrogenase; Provisional
Probab=98.83 E-value=1.2e-07 Score=85.53 Aligned_cols=115 Identities=13% Similarity=0.101 Sum_probs=79.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||.|.||+.+|..|...|.+|..||++....+.. .+.| +....++++ ++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-----------QELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-----------hhcC-------------ceecCCHHHHhhc
Confidence 689999999999999999999999999999986322211 1112 133456666 799
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|...+.+.-+-++.-..++++++++ |++.-.+ ..+.+.+... -.-.++..|.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~ 312 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALESGHLAGYAGDVWF 312 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHHhCCccEEEEecCC
Confidence 999999999888765544455666788888877 5554333 5676766432 2334455444
No 122
>PLN03139 formate dehydrogenase; Provisional
Probab=98.83 E-value=1.3e-07 Score=85.36 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=81.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||.|.||..+|..|...|.+|..||++....+.. .+.|. ....++++ ++
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~g~-------------~~~~~l~ell~ 254 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KETGA-------------KFEEDLDAMLP 254 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhcCc-------------eecCCHHHHHh
Confidence 3689999999999999999999999999999875322211 11121 23456776 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.||+|+.++|...+.+.-+-+++-..++++++++ |++.-.+ +.+.+.+... ..-.++..|.
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~ 319 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWY 319 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCC
Confidence 9999999999888866655556677788888877 5554333 5677776432 2334555554
No 123
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.82 E-value=8.7e-08 Score=85.41 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=79.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||+|.||..+|..|...|++|.+||+++.... . .+.|. .. .++++ ++
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-----------~~~~~-------------~~-~~l~ell~ 203 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-E-----------KELGA-------------EY-RPLEELLR 203 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-H-----------HHcCC-------------Ee-cCHHHHHh
Confidence 37899999999999999999999999999999865321 1 11121 22 35555 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.||+|+.++|...+.+.-+-++.-+.++++++++ |++.-.+ ..+.+.+... -...++..|.
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~ 268 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTARGKVVDTKALVKALKEGWIAGAGLDVFE 268 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECcCchhcCHHHHHHHHHcCCeEEEEeccCC
Confidence 9999999999888766555556667788888877 5544332 5677766432 2234445443
No 124
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.80 E-value=4.5e-08 Score=85.84 Aligned_cols=111 Identities=12% Similarity=0.178 Sum_probs=76.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||.|.||+.+|..+...|++|.+||++... .+.. ....++++ ++
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~~------------~~~~~l~ell~ 172 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGIS------------SIYMEPEDIMK 172 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCcc------------cccCCHHHHHh
Confidence 378999999999999999888889999999987421 1110 11235566 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.||+|+.++|...+.+.-+-++.-..++++++++ |++.-+ ...+.+.+... ....++..|.
T Consensus 173 ~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~ 237 (303)
T PRK06436 173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWW 237 (303)
T ss_pred hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCC
Confidence 9999999999888755544455556678888777 555433 35677766532 3345555543
No 125
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.77 E-value=4.4e-08 Score=77.27 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=76.8
Q ss_pred EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhcccCCCcEEecCc-cccCCC
Q 022434 8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL-SQAVGTDAPRRLRCTSNL-KDLHSA 85 (297)
Q Consensus 8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~-~~~~~a 85 (297)
|+|+|+|.||+.+|..|+++|++|+++++++ .++.. .+.|.. +....+..........+. +..+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAI-----------KEQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHH-----------HHHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhh-----------hheeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999998 66654 233321 100000111111112222 246789
Q ss_pred cEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCC
Q 022434 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRP 135 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~ 135 (297)
|+||.|+.... ...++..+.+.+.+++.|++...++.. +.+.+..+.+
T Consensus 69 D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~ 117 (151)
T PF02558_consen 69 DLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP 117 (151)
T ss_dssp SEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS
T ss_pred cEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC
Confidence 99999997544 346778899999999888888888886 5566665443
No 126
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.77 E-value=4.3e-08 Score=86.56 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=66.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+||+|||+|.+|+.+|..|+..| ++|+++|+++++++.....+.+.... .+. ... ....++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~---~~~---------~~~-i~~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF---LPS---------PVK-IKAGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc---cCC---------CeE-EEcCCHHHhC
Confidence 48999999999999999999999 68999999998876654444332110 000 001 1235566789
Q ss_pred CCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEEE
Q 022434 84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+||+||.+.... ..+.+++..++.++++ +++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 999999988541 2234455566777765 55444
No 127
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.70 E-value=1.6e-07 Score=82.79 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=79.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||.|.||..+|..|...|++|.+||++++..... .......++++ ++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~ 189 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLS 189 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHh
Confidence 3789999999999999999999999999999876421100 00001234555 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
+||+|+.++|...+.+.-+-++.-+.++++++++ |++. +.-+.+.+.+... .+-.++..|.
T Consensus 190 ~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalDVf~ 254 (312)
T PRK15469 190 QTRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLDVFS 254 (312)
T ss_pred cCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence 9999999999988866655556666788888777 5543 2335777776543 2334555444
No 128
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.67 E-value=1.6e-07 Score=83.06 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=55.9
Q ss_pred CCCCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434 2 EEKMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79 (297)
Q Consensus 2 ~~~~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
...-+||+|||+|.+|..+|..++..|. ++.++|+++++++.....+++....+ ....+ .++++
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-------------~~~~i-~~~~~ 68 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-------------SPTKI-YAGDY 68 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-------------CCeEE-EeCCH
Confidence 3445799999999999999999999997 89999999887765544433322100 00122 24667
Q ss_pred cccCCCcEEEEec
Q 022434 80 KDLHSADIIVEAI 92 (297)
Q Consensus 80 ~~~~~aD~Vi~~v 92 (297)
+++++||+||.+.
T Consensus 69 ~~~~~adivIita 81 (315)
T PRK00066 69 SDCKDADLVVITA 81 (315)
T ss_pred HHhCCCCEEEEec
Confidence 7899999999876
No 129
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.64 E-value=1.4e-07 Score=83.28 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=64.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+||+|||+|.+|.++|..|+..| .+|.++|+++++++.....+.+. ..+. ......++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~-------~~~~i~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFV-------KPVRIYAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------cccc-------CCeEEeeCCHHHhC
Confidence 37999999999999999999999 58999999987765321111111 0000 01112356777799
Q ss_pred CCcEEEEecccc--------------HHHHHHHHHHHHhhcCCCeEE
Q 022434 84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAIL 116 (297)
Q Consensus 84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii 116 (297)
+||+||.+++.. ..+.+++..+|.++.+...++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 999999998652 223445556677776554433
No 130
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.63 E-value=3.2e-07 Score=81.83 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=69.1
Q ss_pred CcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|+|||+|.||..+|..|+ ..|.+|..||+++..... .+ +...+++++ +
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell 198 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAV 198 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHH
Confidence 368999999999999999994 468899999988643210 00 123446666 7
Q ss_pred CCCcEEEEeccccHHHHHHHH-HHHHhhcCCCeEEEecCCCCcH--HHHhhhcC
Q 022434 83 HSADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSISI--TRLASATS 133 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 133 (297)
++||+|+.++|.....+. ++ .+.-+.++++++++..+.+..+ ..+.+.+.
T Consensus 199 ~~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 199 EGADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred HhCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 899999999998776443 33 3455667888877743333332 45666654
No 131
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.62 E-value=4.1e-08 Score=81.03 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=67.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccC----CCcEEe
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD---PDALVRATKSISSSIQKFVSKGQLSQAVGTDAP----RRLRCT 76 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~i~~~ 76 (297)
..+|+|+|+|.||+.+|..|+.+|+ +++++|.+ ++.+.+-. ... .+.|....+.....+ ..+.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~------~~iG~~Ka~~~~~~l~~inp~~~i~ 93 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKA------SQVGEPKTEALKENISEINPYTEIE 93 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CCh------hhCCCHHHHHHHHHHHHHCCCCEEE
Confidence 3689999999999999999999999 69999998 55443310 000 001110000001111 111111
Q ss_pred --------cCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434 77 --------SNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 77 --------~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
++.++ ++++|+||+| .++.+.|..++.++....+...++.
T Consensus 94 ~~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 94 AYDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred EeeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 11223 6789999999 6888889999998888777666665
No 132
>PRK15076 alpha-galactosidase; Provisional
Probab=98.60 E-value=5.2e-07 Score=83.03 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=55.4
Q ss_pred cEEEEECCChhHHHHHH--HHH----HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434 6 KVMGVVGSGQMGSGIAQ--LGV----MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~--~l~----~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
+||+|||+|.||...+. .++ ..|.+|+++|+++++++.....+++.+... + ...+++.++|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 58999999999966655 333 356799999999999886655555544322 1 12456778884
Q ss_pred -cccCCCcEEEEeccc
Q 022434 80 -KDLHSADIIVEAIVE 94 (297)
Q Consensus 80 -~~~~~aD~Vi~~v~e 94 (297)
+++++||+||+++..
T Consensus 70 ~eal~dADfVv~ti~v 85 (431)
T PRK15076 70 REALQGADYVINAIQV 85 (431)
T ss_pred HHHhCCCCEEeEeeee
Confidence 559999999998743
No 133
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.59 E-value=2.4e-06 Score=73.84 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=103.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc--c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD--L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~ 82 (297)
..+|+|||.|.||.-+|..|.++||.|...||++- +.+.++ -|. ...+++.+ -
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~~----------yg~-------------~~ft~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEK----------YGS-------------AKFTLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHHH----------hcc-------------cccccHHHHHh
Confidence 35799999999999999999999999999999872 222111 121 12233333 2
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhh-cCCCeEEEecCCCCcH--HHHhhhcCCCCeEEEeecCCCCC-CC------ce
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPP-LM------KL 152 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~-~~------~~ 152 (297)
+..|+|+.|+. ..-...+++..... .+.++++...+|.-.. +.+...++....++..|++..|. .. |+
T Consensus 107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 56899999984 22234555555444 6778888866665433 45666777667899999988774 21 23
Q ss_pred EEE--ecC-CCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434 153 VEV--IRG-ADTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 153 vei--~~~-~~~~~~~~~~~~~ll~~lg~~~i~v 183 (297)
|-+ -.+ ....++-+|.+.+++...|.+.+.+
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 321 112 2234788999999999999988865
No 134
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.58 E-value=9.4e-07 Score=83.58 Aligned_cols=114 Identities=22% Similarity=0.242 Sum_probs=77.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||.|.||+.+|..|...|.+|..||+.... +.. .+.|. ...+++++ ++.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g~-------------~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERA-----------EQLGV-------------ELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcCC-------------EEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 111 11221 33456666 789
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|...+.+.-+-++.-+.++++++++ |++.-. ...+.+.+... -...++..|.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~ 257 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-NCARGGIIDEAALYEALEEGHVRAAALDVFE 257 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-EcCCCceeCHHHHHHHHHcCCeeEEEEecCC
Confidence 999999999887654433344455678888776 554433 35677776532 2334555443
No 135
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.58 E-value=1.3e-07 Score=74.86 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=53.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.++|+|+|+|.||.+++..|.+.| ++|+++|+++++.+...+.+.. .. . . ....+.++ +
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~-~~~~~~~~~~ 79 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------A-IAYLDLEELL 79 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------c-eeecchhhcc
Confidence 478999999999999999999996 8899999998877665322110 00 0 0 11233333 7
Q ss_pred CCCcEEEEeccccHH
Q 022434 83 HSADIIVEAIVESED 97 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~ 97 (297)
+++|+||.|+|....
T Consensus 80 ~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 80 AEADLIINTTPVGMK 94 (155)
T ss_pred ccCCEEEeCcCCCCC
Confidence 899999999998763
No 136
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.57 E-value=6.2e-07 Score=79.14 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=65.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
-+||+|||+|.+|..+|..++..|. ++.++|+++++++.....+.+... + .....+..+.+++++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-------~------~~~~~v~~~~dy~~~ 69 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-------F------LKNPKIEADKDYSVT 69 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-------c------CCCCEEEECCCHHHh
Confidence 3599999999999999999999885 799999998766544333322210 0 001245556788889
Q ss_pred CCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeE
Q 022434 83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAI 115 (297)
Q Consensus 83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~i 115 (297)
++||+||.+... +..+.+++...+.++++...+
T Consensus 70 ~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~v 116 (312)
T cd05293 70 ANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL 116 (312)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 999999986532 112344455567777654443
No 137
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.5e-06 Score=75.45 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=124.4
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc--
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-- 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 81 (297)
+...|++||++.||..++.+.+.+||.|.+|+|+.++.+.+.+.- .+| ..|....++++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flane--------ak~-----------~~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANE--------AKG-----------TKIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHh--------hcC-----------CcccCCCCHHHHH
Confidence 357899999999999999999999999999999999988774321 111 11233455554
Q ss_pred --cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCe-EEEecCCCCcH-H-HHhhhcCCCCeEEEeecCCCCCCCc-eEEE
Q 022434 82 --LHSADIIVEAIVESEDVKKKLFSELDKITKASA-ILASNTSSISI-T-RLASATSRPCQVIGMHFMNPPPLMK-LVEV 155 (297)
Q Consensus 82 --~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~-~-~l~~~~~~~~~~~g~h~~~p~~~~~-~vei 155 (297)
++.--.||..+.-... ....+++|.+++..+- ||.-..|.++- + ...+.....--|+|.-......-.+ ...+
T Consensus 66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl 144 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL 144 (487)
T ss_pred HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc
Confidence 4667777777754433 4567778888776654 55433444443 2 2222223334466654432211111 2346
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCCe-----E--EEeccc-hhh----hHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHH
Q 022434 156 IRGADTSDETFRATKALAERFGKT-----V--VCSQDY-AGF----IVNRIL---MPMINEAFFTLYT-GVATKEDIDAG 219 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~lg~~-----~--i~v~d~-~g~----i~nri~---~~~~~Ea~~l~~~-g~~~~~~id~a 219 (297)
++| +++++...++++|..+..+ | .++++. .|. +.|-|= ..++.||+.++.. ++.+-++|-.+
T Consensus 145 MpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~v 222 (487)
T KOG2653|consen 145 MPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEV 222 (487)
T ss_pred CCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 777 8999999999999887443 2 234432 332 344332 3678999999987 66777777666
Q ss_pred Hh
Q 022434 220 MK 221 (297)
Q Consensus 220 ~~ 221 (297)
+.
T Consensus 223 F~ 224 (487)
T KOG2653|consen 223 FD 224 (487)
T ss_pred HH
Confidence 54
No 138
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.57 E-value=2.2e-07 Score=75.50 Aligned_cols=115 Identities=21% Similarity=0.216 Sum_probs=75.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||.|.+|+.+|..+..-|.+|+.||++....... .+.+ ....++++ ++
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-----------~~~~--------------~~~~~l~ell~ 90 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-----------DEFG--------------VEYVSLDELLA 90 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-----------HHTT--------------EEESSHHHHHH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-----------cccc--------------ceeeehhhhcc
Confidence 4789999999999999999999999999999998754421 1112 13446666 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.||+|+.++|-..+.+.-+-++.-..++++++++ |++.-. -+.+.+.+... ..-.++..+.
T Consensus 91 ~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred hhhhhhhhhccccccceeeeeeeeeccccceEEE-eccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 9999999999665433323334445678888887 555333 35677766433 2334555554
No 139
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.54 E-value=3.1e-07 Score=80.77 Aligned_cols=96 Identities=20% Similarity=0.321 Sum_probs=66.2
Q ss_pred EEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCCC
Q 022434 8 MGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 8 I~viG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
|+|||+|.+|.++|..++..| .+++++|+++++++.....+++....+ ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence 689999999999999999999 689999999988776554444332110 11233445667789999
Q ss_pred cEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434 86 DIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 86 D~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
|+||.+... +..+.+++..++.+.+ ++++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999998853 1223445555677777 455444
No 140
>PLN02602 lactate dehydrogenase
Probab=98.53 E-value=5.8e-07 Score=80.31 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=63.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+||+|||+|.+|..+|..++..|. ++.++|+++++++.....+.+... .. .. .++....++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~------~~------~~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA------FL------PR-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh------cC------CC-CEEEeCCCHHHhC
Confidence 599999999999999999998886 799999998776554333333211 00 00 1333345778899
Q ss_pred CCcEEEEeccc-------c-------HHHHHHHHHHHHhhcCCCe
Q 022434 84 SADIIVEAIVE-------S-------EDVKKKLFSELDKITKASA 114 (297)
Q Consensus 84 ~aD~Vi~~v~e-------~-------~~~k~~~~~~l~~~~~~~~ 114 (297)
+||+||.+.-. . ..+.+++...+.++++...
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i 149 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI 149 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 99999998522 1 1233445556777665444
No 141
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.53 E-value=1.6e-06 Score=82.00 Aligned_cols=114 Identities=21% Similarity=0.214 Sum_probs=78.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||+|.||..+|..+...|++|.+||++... +.. .+.|. ... ++++ ++
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g~-------------~~~-~l~ell~ 193 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLGV-------------ELV-SLDELLA 193 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcCC-------------EEE-cHHHHHh
Confidence 368999999999999999999999999999986431 111 11221 233 5665 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.||+|+.++|...+.+.-+-.+.-+.++++++++ |++.- ....+.+.+... ..-.++..|.
T Consensus 194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~ 258 (526)
T PRK13581 194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRII-NCARGGIIDEAALAEALKSGKVAGAALDVFE 258 (526)
T ss_pred hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHhcCCeeEEEEecCC
Confidence 9999999999887755444355666788888777 55433 335677776432 2334555543
No 142
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.48 E-value=9.2e-07 Score=78.23 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=78.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|||||+|.+|+.+|..+..-|.+|..||+ .+...+.. .+ .....++++ +
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~-------------~~~~~~Ld~lL 195 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DG-------------VVGVDSLDELL 195 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------cc-------------ceecccHHHHH
Confidence 36899999999999999999999999999999 33322111 11 123466777 8
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
+.||+|...+|...+.+.-+-++.-..++++++++ |++.- ....+.+.+... -+-.++..|.
T Consensus 196 ~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~ 261 (324)
T COG0111 196 AEADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFE 261 (324)
T ss_pred hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCC
Confidence 99999999999888744433344455678888666 76643 335677777543 2334555554
No 143
>PLN02928 oxidoreductase family protein
Probab=98.44 E-value=3.6e-06 Score=75.44 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=77.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..+...|.+|++||++....... ..+ +................++++ ++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPED------------GLL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhh------------hhc-cccccccccccccCcccCHHHHHhh
Confidence 689999999999999999999999999999974321110 000 000000000000001235555 789
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|-..+.+.-+-++.-..++++++++ |++. +.-+.+.+.+... ....++..|.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-NvaRG~lVde~AL~~AL~~g~i~gAaLDV~~ 290 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-NIARGGLLDYDAVLAALESGHLGGLAIDVAW 290 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence 999999999877654433345556678888887 5543 3335677777543 2334556554
No 144
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.42 E-value=1.2e-06 Score=77.43 Aligned_cols=107 Identities=18% Similarity=0.302 Sum_probs=67.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCc--EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLD--VWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~--V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
+||+|+|+ |.+|..++..|+..|+. |+++|+++ ++++.....+.+ .+...+ ...++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d---~~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYD---ALAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhh---chhccC---------CCcEEEECCCHH
Confidence 58999998 99999999999999974 99999965 333322111111 111111 112455566777
Q ss_pred ccCCCcEEEEeccc------c-H-------HHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434 81 DLHSADIIVEAIVE------S-E-------DVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e------~-~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
++++||+||.++.. + . .+.+++...|.+.++ +.+++..++..++
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHH
Confidence 79999999999841 1 1 234455556777765 5555556665554
No 145
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.42 E-value=1.6e-06 Score=68.25 Aligned_cols=88 Identities=31% Similarity=0.356 Sum_probs=56.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-ccC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DLH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (297)
-+++.|+|.|..|+++|..|...|.+|+++|++|-++-++ ...|. .+. +.+ .++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-----------~~dGf-------------~v~-~~~~a~~ 77 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-----------AMDGF-------------EVM-TLEEALR 77 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-----------HHTT--------------EEE--HHHHTT
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-----------hhcCc-------------Eec-CHHHHHh
Confidence 3689999999999999999999999999999999765443 33443 333 344 488
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
.+|++|.+......+..+.+. .+++++|+++.++
T Consensus 78 ~adi~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh 111 (162)
T PF00670_consen 78 DADIFVTATGNKDVITGEHFR----QMKDGAILANAGH 111 (162)
T ss_dssp T-SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSS
T ss_pred hCCEEEECCCCccccCHHHHH----HhcCCeEEeccCc
Confidence 999999987654333334443 4678899885443
No 146
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.41 E-value=1.5e-06 Score=75.93 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=62.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||+|.||..+|..|...|.+|++++|++++.+.+ .+.|.. . ....++++ ++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~-----------~~~g~~----------~-~~~~~l~~~l~ 208 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI-----------TEMGLI----------P-FPLNKLEEKVA 208 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHCCCe----------e-ecHHHHHHHhc
Confidence 3689999999999999999999999999999998765443 222320 0 01123333 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
++|+||.++|...- . ++..+.++++++++...|..
T Consensus 209 ~aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 209 EIDIVINTIPALVL-T----ADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred cCCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCcCC
Confidence 99999999986431 1 22334456777776444433
No 147
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.40 E-value=3.5e-06 Score=74.49 Aligned_cols=110 Identities=24% Similarity=0.276 Sum_probs=77.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|||||.|.+|+.+|..+..-|.+|..||+..... +.+ +. ..++++ ++
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~ 195 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLK 195 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhh
Confidence 3789999999999999999999999999999864210 001 11 235666 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.||+|+.++|-..+.+.-+-++.-..++++++++ |++.- ....+.+.+... -. .++..|.
T Consensus 196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 9999999999877644433344556678888887 66533 335777777543 33 5666664
No 148
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.35 E-value=1.3e-06 Score=78.80 Aligned_cols=110 Identities=19% Similarity=0.184 Sum_probs=71.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|||||+|.||+.+|..+...|++|.+||+.....+ +. ....++++ ++
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~-------------~~~~~l~ell~ 166 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD-------------GDFVSLERILE 166 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC-------------ccccCHHHHHh
Confidence 36899999999999999999999999999998643110 00 01235666 68
Q ss_pred CCcEEEEeccccHH---HHHHHH-HHHHhhcCCCeEEEecCCCCc---HHHHhhhcCCC-CeEEEeecC
Q 022434 84 SADIIVEAIVESED---VKKKLF-SELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFM 144 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~---~k~~~~-~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~ 144 (297)
.||+|+.++|-..+ ....++ ++.-..++++++++ |++.-+ ...+.+.+... ....++..|
T Consensus 167 ~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 167 ECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred hCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 99999999996542 122233 23445578888877 555433 35666665332 234455554
No 149
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.35 E-value=2e-06 Score=75.74 Aligned_cols=74 Identities=23% Similarity=0.408 Sum_probs=51.0
Q ss_pred EEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
||+|||+|.+|..+|..|+..|. +++++|+++++++.....+.+.. .+.. ...-++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~-------~~~~----~~~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT-------ALTY----STNTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh-------ccCC----CCCEEEE-ECCHHHhCC
Confidence 69999999999999999999886 79999999876654322222211 0000 0001222 467888999
Q ss_pred CcEEEEec
Q 022434 85 ADIIVEAI 92 (297)
Q Consensus 85 aD~Vi~~v 92 (297)
||+||.+.
T Consensus 69 aDivvita 76 (307)
T cd05290 69 ADIIVITA 76 (307)
T ss_pred CCEEEECC
Confidence 99999876
No 150
>PRK05442 malate dehydrogenase; Provisional
Probab=98.35 E-value=2.7e-06 Score=75.40 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=66.7
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCc
Q 022434 4 KMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRL 73 (297)
Q Consensus 4 ~~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 73 (297)
+.+||+|||+ |.+|..+|..|+..|. +++++|++++ +++.....+.+... ....++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~ 68 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGV 68 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCc
Confidence 4569999998 9999999999988775 7999999643 23322212221110 001112
Q ss_pred EE-ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434 74 RC-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 74 ~~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
.. ..+++++++||+||.+..- +..+.+++..+|.++.+++++++..|....+
T Consensus 69 ~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 135 (326)
T PRK05442 69 VITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT 135 (326)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence 22 4566789999999986531 1233445555677777667766645544433
No 151
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.33 E-value=6.4e-06 Score=75.48 Aligned_cols=111 Identities=25% Similarity=0.347 Sum_probs=76.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|||||.|.+|+.+|..+..-|.+|..||+++... .+ ......++++ ++
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~ 202 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLA 202 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHh
Confidence 3689999999999999999999999999999864210 00 1123446776 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFM 144 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~ 144 (297)
.||+|+.++|-..+.+.-+-++.-..++++++++ |++.- ....+.+.+... -.-.++..|
T Consensus 203 ~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDVf 266 (409)
T PRK11790 203 QSDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALKSGHLAGAAIDVF 266 (409)
T ss_pred hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHcCCceEEEEcCC
Confidence 9999999999877654434344556678888877 66533 335677766432 233445533
No 152
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.33 E-value=2e-05 Score=68.97 Aligned_cols=165 Identities=16% Similarity=0.104 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCCcEEecCccccCCCcEEEEecc
Q 022434 15 QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AVGTDAPRRLRCTSNLKDLHSADIIVEAIV 93 (297)
Q Consensus 15 ~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~ 93 (297)
.||+.+|..|+++|++|++++|+ +..+.. .+.|..-. .........+..+++++....+|+||.|++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i-----------~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEAL-----------NQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHH-----------HHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 37999999999999999999997 444443 23332100 000000012334455566778999999998
Q ss_pred ccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-HHHhhhcCCCCeEEEeecC-----CCCCCCc--eEEEecC-CCCcHH
Q 022434 94 ESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFM-----NPPPLMK--LVEVIRG-ADTSDE 164 (297)
Q Consensus 94 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~-----~p~~~~~--~vei~~~-~~~~~~ 164 (297)
... ...++..+.+.+.++++|++...++.. +.+.+.++.+.-+.|+.++ .|-.+.. .-.+..| .....+
T Consensus 69 s~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~ 146 (293)
T TIGR00745 69 AYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENE 146 (293)
T ss_pred chh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchH
Confidence 643 356778888888888888888888865 4455544332222222222 2211000 0011112 111224
Q ss_pred HHHHHHHHHHHcCCeEEEeccchhhhHHH
Q 022434 165 TFRATKALAERFGKTVVCSQDYAGFIVNR 193 (297)
Q Consensus 165 ~~~~~~~ll~~lg~~~i~v~d~~g~i~nr 193 (297)
..+.+.++|...|.......|....++..
T Consensus 147 ~~~~l~~~l~~~~~~~~~~~di~~~~w~K 175 (293)
T TIGR00745 147 AVEALAELLNEAGIPAELHGDILAAIWKK 175 (293)
T ss_pred HHHHHHHHHHhCCCCCEecchHHHHHHHH
Confidence 55667777777777666666654443333
No 153
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=1.7e-06 Score=75.08 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=53.5
Q ss_pred CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|+|||.| .||.+||..|.++|+.|++|++....++. .++
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e-------------------------------------~~~ 201 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKA-------------------------------------LCR 201 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHH-------------------------------------HHh
Confidence 4789999996 99999999999999999999865432211 146
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.+++....+...+ ++++++++.
T Consensus 202 ~ADIVIsavg~~~~v~~~~-------ik~GaiVID 229 (301)
T PRK14194 202 QADIVVAAVGRPRLIDADW-------LKPGAVVID 229 (301)
T ss_pred cCCEEEEecCChhcccHhh-------ccCCcEEEE
Confidence 7999999998765544333 567777664
No 154
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.29 E-value=3.1e-06 Score=73.85 Aligned_cols=104 Identities=23% Similarity=0.383 Sum_probs=64.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe--cCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT--SNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~~ 81 (297)
+||+|||+|.+|.++|..|+..++ ++.++|+++++++.....+.+... -........ .++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~--------------~~~~~~~i~~~~~y~~ 66 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA--------------PLGSDVKITGDGDYED 66 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch--------------hccCceEEecCCChhh
Confidence 489999999999999999977664 899999996654432212111100 011112233 44788
Q ss_pred cCCCcEEEEec--cc------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 82 LHSADIIVEAI--VE------------SEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 ~~~aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
++++|+|+.+. |. +..+.+.+..++.+.++ +.++...|....
T Consensus 67 ~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD 122 (313)
T COG0039 67 LKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVD 122 (313)
T ss_pred hcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHH
Confidence 99999999887 22 22345555566777776 554443444333
No 155
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.25 E-value=1.2e-05 Score=71.29 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=76.1
Q ss_pred cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|||||.|.+|..+|..+. .-|.+|..||+....... .+.+. .. .++++ ++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~------------~~~~~-------------~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE------------ERFNA-------------RY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH------------HhcCc-------------Ee-cCHHHHHH
Confidence 78999999999999999987 678899999986421110 01111 22 35666 78
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.||+|+.++|-..+.+.-+-++.-..++++++++ |++.- .-+.+.+.+... ..-.++..|.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 264 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQKGEIHAAGLDVFE 264 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 9999999999888754444345556678888887 66543 336777777543 2234455443
No 156
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.24 E-value=1.2e-05 Score=70.51 Aligned_cols=91 Identities=22% Similarity=0.161 Sum_probs=61.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||+|.+|..++..|...|.+|+++|+++++.+.+ .+.|.. ....+++.+ ++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~-----------~~~G~~-----------~~~~~~l~~~l~ 209 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI-----------TEMGLS-----------PFHLSELAEEVG 209 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHcCCe-----------eecHHHHHHHhC
Confidence 4789999999999999999999999999999998765443 223321 001123333 68
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 122 (297)
++|+||.++|... +.++.-+.++++++|+...+.
T Consensus 210 ~aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 210 KIDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 8999999998532 122333345666766544443
No 157
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.24 E-value=1.3e-05 Score=70.83 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=75.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||.|.+|+.+|..+..-|.+|..||+.... .. .. ...++++ ++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~----------------~~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------RE----------------GYTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------cc----------------ccCCHHHHHHh
Confidence 68999999999999999999999999999975321 00 00 0134565 789
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|-..+.+.-+-++.-..++++++++ |++. +....+.+.+... ..-.++..|.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~ 261 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVLV 261 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence 999999999877644433344556678888887 6653 3335777777532 2334555554
No 158
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.24 E-value=5.2e-06 Score=73.54 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=62.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..++|+|||+|.||..++..+.. ...+|++|+|++++.+.+.+.+.+ .|. .+....+.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~ 185 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEA 185 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHH
Confidence 35789999999999999985554 347899999999988877544321 121 1244566665
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.+.+.... ++. .+.+++++.|...++
T Consensus 186 av~~aDIVi~aT~s~~p----vl~--~~~l~~g~~i~~ig~ 220 (314)
T PRK06141 186 AVRQADIISCATLSTEP----LVR--GEWLKPGTHLDLVGN 220 (314)
T ss_pred HHhcCCEEEEeeCCCCC----Eec--HHHcCCCCEEEeeCC
Confidence 7899999888876522 221 134566666554443
No 159
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.23 E-value=9.5e-06 Score=70.30 Aligned_cols=71 Identities=25% Similarity=0.201 Sum_probs=52.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..||+|||+|.||..++..|.+. +++|. ++|+++++.+...+ +.|. ....+++++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~------------~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRR------------PPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCC------------CcccCCHHH
Confidence 47899999999999999999874 78876 88999887654411 1121 023455665
Q ss_pred -cCCCcEEEEeccccHH
Q 022434 82 -LHSADIIVEAIVESED 97 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~ 97 (297)
++++|+|++|.|.+..
T Consensus 64 ll~~~D~Vvi~tp~~~h 80 (271)
T PRK13302 64 LATHADIVVEAAPASVL 80 (271)
T ss_pred HhcCCCEEEECCCcHHH
Confidence 6789999999997653
No 160
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=98.23 E-value=7.3e-06 Score=72.60 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=66.9
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR 74 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
.-||+|||+ |.+|..+|..|...|. +++++|+++ ++++.....+.+. .. ....+..
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~--------~~------~~~~~~~ 68 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDC--------AF------PLLAGVV 68 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhc--------cc------cccCCcE
Confidence 358999998 9999999999998885 799999965 3233322222111 10 0011122
Q ss_pred E-ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 75 C-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 75 ~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
. ..+++++++||+||.+.-- +..+.+++..++.++++++++++..|..+.
T Consensus 69 i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 133 (323)
T TIGR01759 69 ATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN 133 (323)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 2 4567789999999987522 123445556668888776776665554443
No 161
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.23 E-value=3.6e-06 Score=75.86 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=71.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|||||.|.+|+.+|..+..-|.+|.+||+.... . +. . ....++++ ++
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~-~~~~~L~ell~ 166 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------E-GDFRSLDELVQ 166 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------c-cccCCHHHHHh
Confidence 368999999999999999999999999999975321 0 00 0 01235666 68
Q ss_pred CCcEEEEeccccHH---HHHHHH-HHHHhhcCCCeEEEecCCCC---cHHHHhhhcCC-CCeEEEeecCC
Q 022434 84 SADIIVEAIVESED---VKKKLF-SELDKITKASAILASNTSSI---SITRLASATSR-PCQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~---~k~~~~-~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~-~~~~~g~h~~~ 145 (297)
.||+|+..+|-..+ -...++ ++.-..++++++++ |++.- .-..+.+.+.. ...-.++..|.
T Consensus 167 ~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e 235 (378)
T PRK15438 167 EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVWE 235 (378)
T ss_pred hCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecCC
Confidence 99999999985442 011222 33445678888887 66543 33566666643 23344555544
No 162
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.21 E-value=4.3e-06 Score=64.65 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=52.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.++|.|||+|.||++++..|+..|.+ |++++|+.++++.+.+.+ .+. .-.+...++... +
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---------~~~---------~~~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---------GGV---------NIEAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---------TGC---------SEEEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---------Ccc---------ccceeeHHHHHHHH
Confidence 57999999999999999999999987 999999999887764332 010 000112233333 6
Q ss_pred CCCcEEEEeccccH
Q 022434 83 HSADIIVEAIVESE 96 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~ 96 (297)
..+|+||.|+|-..
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 78999999987654
No 163
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=98.21 E-value=1.6e-05 Score=72.90 Aligned_cols=105 Identities=9% Similarity=0.079 Sum_probs=70.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMD-------GL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR 74 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
.-||+|||+ |.+|..+|..|+.. |+ +++++|+++++++...-.+++..-.+ ..++.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceE
Confidence 358999999 99999999999988 65 79999999998776544444332111 12233
Q ss_pred -EecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434 75 -CTSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 75 -~~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
.+.+++++++||+||.+..- +..+.+++...|.++..++++++..+...
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 34677889999999987622 12234445555666555666655444333
No 164
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.19 E-value=4.5e-06 Score=73.98 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=65.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR 74 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
.+||+|||+ |.+|..+|..++..|. +++++|++++. ++.....+. +... ....++.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~--------~~~~------~~~~~~~ 67 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELE--------DCAF------PLLAEIV 67 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhh--------hccc------cccCceE
Confidence 368999999 9999999999999886 79999996432 322111111 1100 0111222
Q ss_pred E-ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434 75 C-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 75 ~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
. ..+++++++||+||.+..- +..+.+++..+|.++.+++++++..|...
T Consensus 68 i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 68 ITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred EecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 2 4566779999999987522 12344555566777776566655444433
No 165
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.17 E-value=2.5e-05 Score=65.31 Aligned_cols=151 Identities=21% Similarity=0.305 Sum_probs=106.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|++||+|.|..+++..+...|. ++..+-.+...... .+.+.|.- .+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g~~------------~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALGVK------------TVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCCce------------eeechHHH
Confidence 479999999999999999999885 34444432211111 01222321 23444445
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE-EecCCC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGAD 160 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-i~~~~~ 160 (297)
++.+|+++.++. +.+...++.++......+.||.|..-+.+++.+...+..+.|++.+.+..|..+..... ...+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 889999999984 34455666666665666778888888999988888888677899998888886666555 445566
Q ss_pred CcHHHHHHHHHHHHHcCCeE
Q 022434 161 TSDETFRATKALAERFGKTV 180 (297)
Q Consensus 161 ~~~~~~~~~~~ll~~lg~~~ 180 (297)
...+..+.+.+++...|+-.
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 77778899999999999743
No 166
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.17 E-value=2e-05 Score=71.86 Aligned_cols=85 Identities=26% Similarity=0.290 Sum_probs=60.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
-++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+ .+.|. ......+.+++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-----------~~~G~-------------~~~~~~e~v~~ 257 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA-----------AMEGY-------------EVMTMEEAVKE 257 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH-----------HhcCC-------------EEccHHHHHcC
Confidence 3689999999999999999999999999999999887665 33443 11111123678
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+|+||+|......+. .+.-..++++.+++
T Consensus 258 aDVVI~atG~~~~i~----~~~l~~mk~Ggilv 286 (413)
T cd00401 258 GDIFVTTTGNKDIIT----GEHFEQMKDGAIVC 286 (413)
T ss_pred CCEEEECCCCHHHHH----HHHHhcCCCCcEEE
Confidence 999999986433222 22234566777665
No 167
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.16 E-value=2.2e-05 Score=69.57 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=75.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||.|.+|+.+|..+..-|.+|..||+.... ... . ..++++ ++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~~-----------------------------~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-ARP-----------------------------D-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-ccc-----------------------------c-ccCHHHHHHh
Confidence 68999999999999999999999999999986321 000 0 124565 789
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcCCC-CeEEEeecCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|-..+.+.-+-++.-+.++++++++ |++. +..+.+.+.+... ..-.++..|.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 261 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVLS 261 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 999999999877754444445556678888887 6653 3335677777532 2334555554
No 168
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.16 E-value=1.1e-05 Score=66.62 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=36.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|+|+|+|.||..+|..|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 689999999999999999999999999999998776654
No 169
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.14 E-value=1.7e-05 Score=68.48 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=50.0
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMD--GLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+.+.+ ..+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999998876 466 5588999887665421 111 134556666
Q ss_pred cCCCcEEEEeccccH
Q 022434 82 LHSADIIVEAIVESE 96 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~ 96 (297)
+.++|+|++|.+.+.
T Consensus 59 l~~~DvVvi~a~~~~ 73 (265)
T PRK13304 59 VEDVDLVVECASVNA 73 (265)
T ss_pred hcCCCEEEEcCChHH
Confidence 578999999997544
No 170
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.12 E-value=9.5e-06 Score=71.78 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=73.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-+++||||.|.+|..+|..+..-|.+|..||+++. -+.. +.+ ...+.+ +++ ++
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~------------~~~------------~~~y~~-l~ell~ 199 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE------------KEL------------GARYVD-LDELLA 199 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH------------hhc------------Cceecc-HHHHHH
Confidence 47999999999999999999977889999999875 1111 111 013444 665 89
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATS 133 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~ 133 (297)
.||+|+..+|-..+...-+-++.-+.++++++++ ||+.= ....+.+.+.
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888755545455666788888776 77643 3356666664
No 171
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.12 E-value=1.4e-05 Score=72.55 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=91.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEE------EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWL------VDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN 78 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~------~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
-++|+|||.|..|.+.|..|...|++|++ +|.+.+.-+.+ .+.|. .+ .+
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA-----------~~dGF-------------~v-~~ 90 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA-----------TENGF-------------KV-GT 90 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHH-----------HhcCC-------------cc-CC
Confidence 37899999999999999999999999993 33333333332 33342 23 33
Q ss_pred ccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCC-------
Q 022434 79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM------- 150 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~------- 150 (297)
.++ ++.||+|+..+|+. . ...++.++.+.+++++.+..+. +..+.......+....++-+-|-.|-+..
T Consensus 91 ~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G 167 (487)
T PRK05225 91 YEELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRG 167 (487)
T ss_pred HHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcC
Confidence 444 89999999999987 3 6677788999999998876433 33322111111111234444444433211
Q ss_pred ---c-eEEEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434 151 ---K-LVEVIRGADTSDETFRATKALAERFGKT 179 (297)
Q Consensus 151 ---~-~vei~~~~~~~~~~~~~~~~ll~~lg~~ 179 (297)
| ++-|-.-...+-.+.+.+..+...+|..
T Consensus 168 ~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 168 FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred CCceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence 1 2333311234556788888999999876
No 172
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.12 E-value=0.00013 Score=62.76 Aligned_cols=204 Identities=14% Similarity=0.242 Sum_probs=117.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHH----HHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKS----ISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN 78 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
+.+|+-||+|++|.+-....+.. ..+|+++|.+..++.+-... .+..++..++ ..+-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~---------~crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVK---------QCRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHH---------HhcCCceeeecc
Confidence 36899999999999887766553 46899999998877542110 1122222222 123356678889
Q ss_pred ccc-cCCCcEEEEecccc-------------HHHHHHHHHHHHhhcCCCeEEEecCCCCcH---HHHhhhcCCCCeEEEe
Q 022434 79 LKD-LHSADIIVEAIVES-------------EDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGM 141 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v~e~-------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~ 141 (297)
.+. ++++|+|+.+|-.+ +..-....+.|.+....+.|+. ..|++|+ +.+...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 887 99999999998542 2223344455666666666665 5666665 344444432221 22
Q ss_pred ec---CCCCCCC----------ceEEEecCCCCcH--HHHHHHHHHHHHc-CCeEEEe-----ccchhhhHHHHHH---H
Q 022434 142 HF---MNPPPLM----------KLVEVIRGADTSD--ETFRATKALAERF-GKTVVCS-----QDYAGFIVNRILM---P 197 (297)
Q Consensus 142 h~---~~p~~~~----------~~vei~~~~~~~~--~~~~~~~~ll~~l-g~~~i~v-----~d~~g~i~nri~~---~ 197 (297)
+| .||..+. +---++.|..+.+ .+++.+..+++.+ -..-+.. .+...+.+|..++ .
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqris 228 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRIS 228 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHh
Confidence 22 2232111 1123555554432 2445555555543 2222222 2334445555554 3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHH
Q 022434 198 MINEAFFTLYTGVATKEDIDAGM 220 (297)
Q Consensus 198 ~~~Ea~~l~~~g~~~~~~id~a~ 220 (297)
-+|....++|.-+++..++..|.
T Consensus 229 sins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 229 SINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhHHHHHHHHhcCCCHHHHHHHh
Confidence 46777788888889999988876
No 173
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.10 E-value=1.4e-05 Score=60.80 Aligned_cols=101 Identities=27% Similarity=0.427 Sum_probs=57.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+||+|+|+ |.||+.++..+.+ .|+++. ++|++++... |.-..+-.......+.+.+++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~----------------g~d~g~~~~~~~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV----------------GKDVGELAGIGPLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT----------------TSBCHHHCTSST-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc----------------cchhhhhhCcCCcccccchhHHHh
Confidence 48999999 9999999999988 788855 6688762110 00000000011223456677777
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHH
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR 127 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 127 (297)
++.+|++|+... ++ .+...++..++.+..+++.|++...++
T Consensus 65 ~~~~DVvIDfT~--p~---~~~~~~~~~~~~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 65 LEEADVVIDFTN--PD---AVYDNLEYALKHGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp TTH-SEEEEES---HH---HHHHHHHHHHHHT-EEEEE-SSSHHHH
T ss_pred cccCCEEEEcCC--hH---HhHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 677999999872 22 222233333334566666787887543
No 174
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.10 E-value=0.00016 Score=62.02 Aligned_cols=146 Identities=21% Similarity=0.232 Sum_probs=90.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|+|||.|..|.+-|.+|..+|.+|++=-|.... -+++ .+.|. .+.+-.++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dGf-------------~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDGF-------------KVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcCC-------------EeecHHHHhh
Confidence 479999999999999999999999998877665443 2222 45553 3444445589
Q ss_pred CCcEEEEeccccHHHHHHHHH-HHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCC----------c-
Q 022434 84 SADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM----------K- 151 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~----------~- 151 (297)
.||+|+..+|+.. ..+++. +|.+.++.+..+.... ++.+..-.-..+....++-+-|-.|-+.. |
T Consensus 74 ~ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~FaH-GfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~ 150 (338)
T COG0059 74 RADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALGFAH-GFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPA 150 (338)
T ss_pred cCCEEEEeCchhh--HHHHHHHHhhhhhcCCceEEecc-ccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCcee
Confidence 9999999999766 446666 7999998887665332 22221100000111123333333333211 1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHHcCCe
Q 022434 152 LVEVIRGADTSDETFRATKALAERFGKT 179 (297)
Q Consensus 152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~ 179 (297)
++-|- ...+-.+.+.+..+.+.+|..
T Consensus 151 LiAV~--qD~sG~a~~~Ala~AkgiGg~ 176 (338)
T COG0059 151 LIAVH--QDASGKALDIALAYAKGIGGT 176 (338)
T ss_pred EEEEE--eCCCchHHHHHHHHHHhcCCC
Confidence 22222 223445788888899999853
No 175
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=5.3e-05 Score=63.79 Aligned_cols=92 Identities=18% Similarity=0.284 Sum_probs=60.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE--ecC---cc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC--TSN---LK 80 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~---~~ 80 (297)
|+|.|||+|.+|.++|..|.+.||+|+++|++++++++.... +... +... .++ ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---------~~~~-----------~~v~gd~t~~~~L~ 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---------ELDT-----------HVVIGDATDEDVLE 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---------hcce-----------EEEEecCCCHHHHH
Confidence 589999999999999999999999999999999987763110 0110 0011 122 22
Q ss_pred -c-cCCCcEEEEeccccHHHHHHHHHHHHhh-cCCCeEEEec
Q 022434 81 -D-LHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASN 119 (297)
Q Consensus 81 -~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ 119 (297)
. +.++|+++-+..++.. ..++..+... .....+++..
T Consensus 61 ~agi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 61 EAGIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred hcCCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEEe
Confidence 2 6889999999988763 3344444322 3444555533
No 176
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=98.09 E-value=3.9e-05 Score=69.32 Aligned_cols=104 Identities=11% Similarity=0.116 Sum_probs=66.9
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcE
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLV--DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLR 74 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
.-||+|||+ |.+|..+|..++..|. .++++ |+++++++...-.+.+..-.+ ..++.
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~--------------~~~v~ 109 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPL--------------LREVS 109 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhh--------------cCceE
Confidence 358999999 9999999999998875 24445 888887765544443332111 12233
Q ss_pred -EecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434 75 -CTSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSS 122 (297)
Q Consensus 75 -~~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 122 (297)
.+.+++++++||+||.+..- +..+.+++...|.++.+++++++..|..
T Consensus 110 i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 110 IGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred EecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 24667789999999986522 1233445555677777677766544433
No 177
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.09 E-value=1.7e-05 Score=72.93 Aligned_cols=89 Identities=29% Similarity=0.348 Sum_probs=62.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|||.|.+|+.+|..+...|.+|+++|+++.+...+ ...|. .. .++++ ++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-----------~~~G~-------------~~-~~leell~ 308 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQA-----------AMEGY-------------QV-VTLEDVVE 308 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-----------HhcCc-------------ee-ccHHHHHh
Confidence 4789999999999999999999999999999998764332 12232 11 23444 78
Q ss_pred CCcEEEEeccccHHHHHHHH-HHHHhhcCCCeEEEecCCCCc
Q 022434 84 SADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSIS 124 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~ 124 (297)
.+|+||.+.... .++ .+.-..++++++++ |++...
T Consensus 309 ~ADIVI~atGt~-----~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 309 TADIFVTATGNK-----DIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred cCCEEEECCCcc-----cccCHHHHhccCCCcEEE-EcCCCc
Confidence 999999986432 233 23334567888877 555544
No 178
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.09 E-value=2.2e-05 Score=69.12 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=58.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cC---
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SN--- 78 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 78 (297)
+||+|||+ |.+|+.+|..|+..|. +++++|++ +++...-. ++.+. ...++... .+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD--------L~~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD--------LSHIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH--------hHhCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998884 89999998 22211001 11111 11234432 33
Q ss_pred ccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434 79 LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 79 ~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
++++++||+||.+..- +..+.+++...+.++.+ +++++
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vi 114 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALIL 114 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 6789999999987632 12334455556777754 56554
No 179
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.07 E-value=2.5e-05 Score=70.95 Aligned_cols=99 Identities=25% Similarity=0.252 Sum_probs=65.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
-++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+ ...|. .+.+..+.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-----------~~~G~-------------~v~~leeal~~ 250 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-----------AMDGF-------------RVMTMEEAAKI 250 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-----------HhcCC-------------EeCCHHHHHhc
Confidence 4789999999999999999999999999999998765433 22332 12211123778
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhh
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASA 131 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~ 131 (297)
+|+||++......+. .+.-..++++++++..... +....+.+.
T Consensus 251 aDVVItaTG~~~vI~----~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 251 GDIFITATGNKDVIR----GEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred CCEEEECCCCHHHHH----HHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 999999876432222 2234567788877633321 334455443
No 180
>PLN02306 hydroxypyruvate reductase
Probab=98.05 E-value=4.9e-05 Score=69.00 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=77.5
Q ss_pred cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
++|||||.|.+|+.+|..+. .-|.+|..||+.... .+...+... ..+...+.. ...+....++++ +
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~~--------~~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGEQ--------PVTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---ccccccccc--------cccccccCCHHHHH
Confidence 78999999999999999986 679999999987542 111100000 000000000 001122346776 7
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
+.||+|+.++|-..+.+.-+-++.-+.++++++++ |++.- ....+.+.+... -...++.-|.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 99999999999777644444445556788898887 66532 335677766432 2334555554
No 181
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.04 E-value=2.4e-05 Score=69.31 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=51.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.++|+|||+|.||..++..|...| .+|+++||++++.+.+.+. .|. .....++..+ +
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l 236 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-----------NAVPLDELLELL 236 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-----------eEEeHHHHHHHH
Confidence 578999999999999999998866 6899999999876554221 121 0011123333 6
Q ss_pred CCCcEEEEeccccHH
Q 022434 83 HSADIIVEAIVESED 97 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~ 97 (297)
.++|+||.|++.+..
T Consensus 237 ~~aDvVi~at~~~~~ 251 (311)
T cd05213 237 NEADVVISATGAPHY 251 (311)
T ss_pred hcCCEEEECCCCCch
Confidence 789999999986654
No 182
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=98.04 E-value=2.1e-05 Score=69.29 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=59.3
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-e-cC--c
Q 022434 7 VMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-T-SN--L 79 (297)
Q Consensus 7 ~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 79 (297)
||+|||+ |.+|..+|..|+..|+ ++.++|+++. ...+ ++ ++++. ...++.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a-~g~a-------~D--L~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA-AGVA-------AD--LSHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC-cEEE-------ch--hhcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998886 8999999871 1111 00 11111 1123333 2 22 6
Q ss_pred cccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 80 KDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 80 ~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++++||+||.+..- +..+.+++...+.++. ++++++.-|.
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsN 117 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITN 117 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 779999999987632 2234445555677765 5555443333
No 183
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=98.04 E-value=4e-05 Score=61.90 Aligned_cols=32 Identities=41% Similarity=0.627 Sum_probs=29.8
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
+|.|||+|.||+.++..|+..|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 599999886
No 184
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.03 E-value=2.9e-05 Score=70.99 Aligned_cols=84 Identities=31% Similarity=0.362 Sum_probs=59.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+ ...|. .+ .+.++ ++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A-----------~~~G~-------------~v-~~l~eal~ 266 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA-----------AMDGF-------------RV-MTMEEAAE 266 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH-----------HhcCC-------------Ee-cCHHHHHh
Confidence 4689999999999999999999999999999998765433 22232 11 12333 67
Q ss_pred CCcEEEEeccccHHHHHHHHH-HHHhhcCCCeEEEe
Q 022434 84 SADIIVEAIVESEDVKKKLFS-ELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s 118 (297)
++|+||++..... ++. +.-..++++++++.
T Consensus 267 ~aDVVI~aTG~~~-----vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 267 LGDIFVTATGNKD-----VITAEHMEAMKDGAILAN 297 (425)
T ss_pred CCCEEEECCCCHH-----HHHHHHHhcCCCCCEEEE
Confidence 8999999875322 232 34456778887763
No 185
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=98.03 E-value=1.3e-05 Score=70.31 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=60.0
Q ss_pred EECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCccccCCCc
Q 022434 10 VVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNLKDLHSAD 86 (297)
Q Consensus 10 viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aD 86 (297)
|||+|.+|..+|..|+..+. ++.++|+++++++.....+.+.... ...+... ..+++++++||
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~--------------~~~~~~i~~~~~~~~~daD 66 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASF--------------LPTPKKIRSGDYSDCKDAD 66 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcc--------------cCCCeEEecCCHHHHCCCC
Confidence 69999999999999998886 7999999887665543333322110 0111222 35677899999
Q ss_pred EEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEE
Q 022434 87 IIVEAIVE--------------SEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 87 ~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+||.+... +..+.+++...+.++. ++++++
T Consensus 67 ivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi 110 (299)
T TIGR01771 67 LVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL 110 (299)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 99987632 1223444555566664 455544
No 186
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.02 E-value=0.00012 Score=63.76 Aligned_cols=174 Identities=22% Similarity=0.224 Sum_probs=101.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--CC-----cEEEEeCCHHHHH---HHHHHHHHH--HHHHHHcCCCChhhhcccCCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMD--GL-----DVWLVDTDPDALV---RATKSISSS--IQKFVSKGQLSQAVGTDAPRR 72 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~~~~~---~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~ 72 (297)
..||+|||+|++|++||..+..+ ++ +|..|-+.++.-. .+.+-|... .-+|+. .-....+
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlp--------g~~lP~N 92 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLP--------GIKLPEN 92 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccC--------CccCCCC
Confidence 46899999999999999987764 22 5777755433221 222222110 001111 1233466
Q ss_pred cEEecCccc-cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH-----------HHHhhhcCCCCeEEE
Q 022434 73 LRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-----------TRLASATSRPCQVIG 140 (297)
Q Consensus 73 i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------~~l~~~~~~~~~~~g 140 (297)
+.+.+|+.+ +.+||++|..+|... ...+..+|..+.++++..+|.+.++.. +.|.+.+..|..++.
T Consensus 93 vvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~ 170 (372)
T KOG2711|consen 93 VVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLM 170 (372)
T ss_pred eEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeec
Confidence 778888876 889999999999544 667899999999999988887766552 234444544443322
Q ss_pred eecCCCC-CCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh
Q 022434 141 MHFMNPP-PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 141 ~h~~~p~-~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g 188 (297)
..-+.+. .--...|-..+.....+.-..+..+|+.--.+++.+.|..+
T Consensus 171 GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 171 GANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred CCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 1111000 00012333333222233333466777776677777777654
No 187
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=2.1e-05 Score=68.49 Aligned_cols=70 Identities=29% Similarity=0.241 Sum_probs=52.8
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 5 MKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVD-TDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 5 ~~~I~viG-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
-++|+||| .|.||.+||.+|.++|+.|++|+ ++++ ++ +.+
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~ 199 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVC 199 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHH
Confidence 47999999 89999999999999999999995 6642 11 114
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
+.||+||.|++.+..+... +++++++++..
T Consensus 200 ~~ADIVIsavg~~~~v~~~-------~lk~GavVIDv 229 (296)
T PRK14188 200 RRADILVAAVGRPEMVKGD-------WIKPGATVIDV 229 (296)
T ss_pred hcCCEEEEecCChhhcchh-------eecCCCEEEEc
Confidence 5799999999976544332 26677776643
No 188
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.99 E-value=3.5e-05 Score=68.61 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=63.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..++++|||+|.||...+..+.. ...+|.+||+++++.+.+.++++ +.|. .+...++.++
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~e 188 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPRE 188 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHH
Confidence 35789999999999997665544 34689999999999887755432 1121 1245566666
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|+|.... ++. .+++++++.|....|
T Consensus 189 av~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 189 AVEGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGA 223 (325)
T ss_pred HhccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 8999999999986543 221 234567776654433
No 189
>PRK04148 hypothetical protein; Provisional
Probab=97.97 E-value=8e-05 Score=56.86 Aligned_cols=96 Identities=23% Similarity=0.239 Sum_probs=65.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
.++|.+||+| -|..+|..|++.|++|+.+|.+++.++.+++ .+. . ...+.+ +..+.+--++
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-----------~~~-~-----~v~dDl-f~p~~~~y~~ 77 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK-----------LGL-N-----AFVDDL-FNPNLEIYKN 77 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------hCC-e-----EEECcC-CCCCHHHHhc
Confidence 3679999999 8999999999999999999999998776622 221 0 000110 1223333689
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+|+|-..-|.. + .+.-+.++.+....+.+|-.-+.
T Consensus 78 a~liysirpp~-e-l~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 78 AKLIYSIRPPR-D-LQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCEEEEeCCCH-H-HHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999988753 3 44555667777777777764443
No 190
>PLN00106 malate dehydrogenase
Probab=97.97 E-value=5.1e-05 Score=67.18 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=30.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDP 38 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~--~V~~~d~~~ 38 (297)
..||+|||+ |.+|..+|..|+..++ ++.++|+++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 368999999 9999999999998775 899999987
No 191
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.95 E-value=0.00052 Score=60.71 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=91.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc---cc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL---KD 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~ 81 (297)
-++|+|+|+|-+|..-.+.....|.+|+.+|+++++++.+ .+.|+- .+..+.+. +.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a-----------~~lGAd----------~~i~~~~~~~~~~ 225 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELA-----------KKLGAD----------HVINSSDSDALEA 225 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHH-----------HHhCCc----------EEEEcCCchhhHH
Confidence 4789999999888666666666899999999999998877 444541 11111111 12
Q ss_pred cC-CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEecCCC
Q 022434 82 LH-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD 160 (297)
Q Consensus 82 ~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~~~~ 160 (297)
++ .+|++|++++ ...+. ..+..+.+.++++...-.. .. .....+.+ ..+.....|..+..
T Consensus 226 ~~~~~d~ii~tv~-~~~~~----~~l~~l~~~G~~v~vG~~~--~~----------~~~~~~~~--~li~~~~~i~GS~~ 286 (339)
T COG1064 226 VKEIADAIIDTVG-PATLE----PSLKALRRGGTLVLVGLPG--GG----------PIPLLPAF--LLILKEISIVGSLV 286 (339)
T ss_pred hHhhCcEEEECCC-hhhHH----HHHHHHhcCCEEEEECCCC--Cc----------ccCCCCHH--HhhhcCeEEEEEec
Confidence 22 2888888887 44322 2223333445544321110 00 00000000 01233456666666
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCC
Q 022434 161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVA 211 (297)
Q Consensus 161 ~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~ 211 (297)
++....+.+.+|...-+-+|.+... +-..-+|||+..+++|-+
T Consensus 287 g~~~d~~e~l~f~~~g~Ikp~i~e~--------~~l~~in~A~~~m~~g~v 329 (339)
T COG1064 287 GTRADLEEALDFAAEGKIKPEILET--------IPLDEINEAYERMEKGKV 329 (339)
T ss_pred CCHHHHHHHHHHHHhCCceeeEEee--------ECHHHHHHHHHHHHcCCe
Confidence 7888888888888887777765311 123347888888887643
No 192
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.93 E-value=0.00012 Score=61.63 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=55.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
..||.|||.|.+|.+.|..++..|. ++.++|.++++++...=. .++|. .-....++....|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MD--------LqH~s-----~f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMD--------LQHGS-----AFLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhh--------hcccc-----ccccCCceEecCccccc
Confidence 5789999999999999999888885 899999999877543111 22221 11223566667788888
Q ss_pred CCCcEEEEec
Q 022434 83 HSADIIVEAI 92 (297)
Q Consensus 83 ~~aD~Vi~~v 92 (297)
+++++||.+.
T Consensus 87 a~S~lvIiTA 96 (332)
T KOG1495|consen 87 ANSKLVIITA 96 (332)
T ss_pred CCCcEEEEec
Confidence 9999999876
No 193
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.92 E-value=2e-05 Score=69.93 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=62.3
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-
Q 022434 7 VMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC- 75 (297)
Q Consensus 7 ~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~- 75 (297)
||+|||+ |.+|..+|..|+..|. +++++|+++ +.++.....+.+.. .........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~--------------~~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCA--------------FPLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhc--------------ccccCCcEEe
Confidence 7999999 9999999999998663 599999987 43322111111100 001111223
Q ss_pred ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434 76 TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 76 ~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
..+++++++||+||.+.-. +..+.+++..+|.++++++++++..|...
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 3556779999999976521 22344555566777765566555444333
No 194
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.90 E-value=5.9e-05 Score=66.97 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=61.7
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCCcEE
Q 022434 7 VMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAVGT-DAPRRLRC 75 (297)
Q Consensus 7 ~I~viG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 75 (297)
||+|||+ |.+|+.+|..|+..|. +++++|++++. ++.....+.+ .. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d---------------~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMD---------------CAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhc---------------ccchhcCceec
Confidence 5899999 9999999999998654 59999996542 2211001110 00 01122333
Q ss_pred e-cCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 76 T-SNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 76 ~-~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
+ ++++++++||+||.+... +..+.+++..+|.++++++++++..|....
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD 129 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN 129 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 3 346779999999986522 112344455567777656666654444333
No 195
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.89 E-value=6.2e-05 Score=65.69 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=37.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKS 47 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 47 (297)
++|.|||+|.+|++++..|+..|. +|+++||+.++.+.+.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~ 170 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE 170 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 689999999999999999999997 799999999888776444
No 196
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.87 E-value=7e-05 Score=64.95 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=37.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
.+++.|+|+|.+|++++..|+..|++|++++|++++++...+
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 468999999999999999999999999999999887766543
No 197
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.86 E-value=7e-05 Score=65.88 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=76.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|+|+|.+|..+|.+|..-|-.+.-+.|++...+.. .+.+. -..|.++ ++
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~-----------~~~~~--------------~~~d~~~~~~ 216 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEA-----------YEYYA--------------EFVDIEELLA 216 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhH-----------HHhcc--------------cccCHHHHHh
Confidence 4799999999999999999999993344445655544433 11111 1344555 88
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC---cHHHHhhhcCCC-CeEEEeecCC
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.+|+|+.+.|-..+...-+-+++-..++++++|+ |+.-- .-..+.+.+... -.-.|..-|.
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlV-N~aRG~iide~~l~eaL~sG~i~~aGlDVf~ 281 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLV-NTARGAIIDEEALVEALKSGKIAGAGLDVFE 281 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEE-eccccccccHHHHHHHHhcCCcccccccccC
Confidence 9999999999998866666667778889988887 55432 225666665321 1224455554
No 198
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.86 E-value=0.00012 Score=61.15 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=30.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTD 37 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~ 37 (297)
..+|.|||+|.+|+.+|..|+..|.. ++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999984 9999988
No 199
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.85 E-value=0.00029 Score=56.95 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=48.6
Q ss_pred EEEEECCChhHHHHHH--HHHHC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 7 VMGVVGSGQMGSGIAQ--LGVMD----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~--~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
||+|||+|..-.+.-. .+... +-+++++|+|+++++......++..+ +.|. .-++..++|.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~---~~~~---------~~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVE---EAGA---------DLKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHH---HCTT---------SSEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHH---hcCC---------CeEEEEeCCHH
Confidence 7999999988665433 23332 34899999999999876555444432 1221 23456788887
Q ss_pred c-cCCCcEEEEec
Q 022434 81 D-LHSADIIVEAI 92 (297)
Q Consensus 81 ~-~~~aD~Vi~~v 92 (297)
+ +++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 6 99999999876
No 200
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=4.3e-05 Score=65.99 Aligned_cols=69 Identities=30% Similarity=0.326 Sum_probs=52.6
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|+|||. |.||.+||..|.++|+.|++|.... .++++ +
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------------------------------~~l~~~~ 199 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------------------------------RNLAEVA 199 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------------------------------CCHHHHH
Confidence 478999999 9999999999999999999994221 12333 5
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
+.||+||.+++.+..+... +++++++++.
T Consensus 200 ~~ADIVI~avg~~~~v~~~-------~ik~GavVID 228 (284)
T PRK14179 200 RKADILVVAIGRGHFVTKE-------FVKEGAVVID 228 (284)
T ss_pred hhCCEEEEecCccccCCHH-------HccCCcEEEE
Confidence 7899999999876654433 3677777663
No 201
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.80 E-value=0.00067 Score=56.14 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=74.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cC--cc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SN--LK 80 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--~~ 80 (297)
-++|.|||+|.+|...+..|.++|++|++++++.. .+... .+.+.+ .+. .. .+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-----------~~~~~i------------~~~~~~~~~~ 66 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKL-----------VEEGKI------------RWKQKEFEPS 66 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHH-----------HhCCCE------------EEEecCCChh
Confidence 47899999999999999999999999999987642 12211 233321 221 11 23
Q ss_pred ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecC
Q 022434 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRG 158 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~ 158 (297)
++.++|+||.|+.+ .++...+.. .+..+.++ |... .|.. ..|+.|.. ..++.--+.+
T Consensus 67 ~l~~adlViaaT~d-~elN~~i~~----~a~~~~lv--n~~d-----------~~~~---~~f~~Pa~~~~g~l~iaIsT 125 (202)
T PRK06718 67 DIVDAFLVIAATND-PRVNEQVKE----DLPENALF--NVIT-----------DAES---GNVVFPSALHRGKLTISVST 125 (202)
T ss_pred hcCCceEEEEcCCC-HHHHHHHHH----HHHhCCcE--EECC-----------CCcc---CeEEEeeEEEcCCeEEEEEC
Confidence 48899999988764 343444433 33333333 2221 1111 23444442 2233334555
Q ss_pred CCCcHHHHHHHHHHHHH
Q 022434 159 ADTSDETFRATKALAER 175 (297)
Q Consensus 159 ~~~~~~~~~~~~~ll~~ 175 (297)
.+.+|.....+++-++.
T Consensus 126 ~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 126 DGASPKLAKKIRDELEA 142 (202)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 66788877777766664
No 202
>PLN02494 adenosylhomocysteinase
Probab=97.79 E-value=9.8e-05 Score=67.91 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=60.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|+|.|.+|+.+|..+...|.+|+++|+++.+...+ ...|. .+. +.++ ++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-----------~~~G~-------------~vv-~leEal~ 308 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-----------LMEGY-------------QVL-TLEDVVS 308 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-----------HhcCC-------------eec-cHHHHHh
Confidence 3789999999999999999999999999999998764433 23332 111 3334 67
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
.+|+||++...... +..+.-..++++++++..
T Consensus 309 ~ADVVI~tTGt~~v----I~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 309 EADIFVTTTGNKDI----IMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred hCCEEEECCCCccc----hHHHHHhcCCCCCEEEEc
Confidence 89999987654322 223333467888877733
No 203
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.77 E-value=0.00013 Score=65.07 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=55.3
Q ss_pred CcEEEEECCChhHHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 5 MKVMGVVGSGQMGSGIAQLGV-MDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++++|||+|.+|...+..|+ ..+. +|++|+|++++.+.+.+++.+. .|. .+...++.++
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~------~g~-----------~v~~~~~~~~a 191 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSL------LGI-----------DVTAATDPRAA 191 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhh------cCc-----------eEEEeCCHHHH
Confidence 468999999999999999987 4664 6999999999988775554311 111 1233456665
Q ss_pred cCCCcEEEEeccccH
Q 022434 82 LHSADIIVEAIVESE 96 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~ 96 (297)
+++||+|+.|.|...
T Consensus 192 v~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 192 MSGADIIVTTTPSET 206 (326)
T ss_pred hccCCEEEEecCCCC
Confidence 789999999998644
No 204
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.77 E-value=4.8e-05 Score=60.53 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=35.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR 43 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 43 (297)
|||+|||+ |..|+.|+.-..+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 58999999 999999999999999999999999998754
No 205
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.76 E-value=0.0006 Score=51.19 Aligned_cols=93 Identities=16% Similarity=0.333 Sum_probs=60.3
Q ss_pred EEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 7 VMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
||+|||+|.+|......+... +++++ ++|+++++.+.+.+ +.| +...+|.++ +
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~----------~~~-------------~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE----------KYG-------------IPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH----------HTT-------------SEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH----------Hhc-------------ccchhHHHHHH
Confidence 799999999999999888776 45654 78999988776521 122 235667766 4
Q ss_pred C--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434 83 H--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT 126 (297)
Q Consensus 83 ~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~ 126 (297)
+ +.|+|+.++|..... ++.....+. ...+++--.-..+.+
T Consensus 59 ~~~~~D~V~I~tp~~~h~--~~~~~~l~~--g~~v~~EKP~~~~~~ 100 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSSHA--EIAKKALEA--GKHVLVEKPLALTLE 100 (120)
T ss_dssp HHTTESEEEEESSGGGHH--HHHHHHHHT--TSEEEEESSSSSSHH
T ss_pred HhhcCCEEEEecCCcchH--HHHHHHHHc--CCEEEEEcCCcCCHH
Confidence 4 789999999987642 333332221 224555444444443
No 206
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00055 Score=59.84 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=84.6
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~-~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
.-|||+||+|.||+.|+.+.+. .|.+|..+ |++.....++.++.-..-...++.-..+.-..+...+.+.+++|.+.+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i 96 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI 96 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence 3589999999999999998665 69987754 888776665543221000000111000111111122455677877763
Q ss_pred ---CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC-----CCcHHHHhhhcCCCCeEEEeecCCCCCCCceEE
Q 022434 83 ---HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-----SISITRLASATSRPCQVIGMHFMNPPPLMKLVE 154 (297)
Q Consensus 83 ---~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-----~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve 154 (297)
...|+||++.--...--+..+..|. ....++..|.- +.-+.+.+.. .|+-|
T Consensus 97 ~~~~~IdvIIdATG~p~vGA~~~l~Ai~---h~KHlVMmNVEaDvtIGp~Lk~~Ad~-------~Gviy----------- 155 (438)
T COG4091 97 IANDLIDVIIDATGVPEVGAKIALEAIL---HGKHLVMMNVEADVTIGPILKQQADA-------AGVIY----------- 155 (438)
T ss_pred hcCCcceEEEEcCCCcchhhHhHHHHHh---cCCeEEEEEeeeceeecHHHHHHHhh-------cCeEE-----------
Confidence 3468999987433322223333333 34445554531 1112233332 22221
Q ss_pred EecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 155 VIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 155 i~~~~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
..+.+-.|...-.+.+|.+++|..++..+
T Consensus 156 -S~~~GDeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 156 -SGGAGDEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred -eccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence 22333566667777788889998887653
No 207
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.75 E-value=0.00021 Score=63.25 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCC--CcEEEEeCC
Q 022434 4 KMKVMGVVGS-GQMGSGIAQLGVMDG--LDVWLVDTD 37 (297)
Q Consensus 4 ~~~~I~viG~-G~mG~~iA~~l~~~G--~~V~~~d~~ 37 (297)
+++||+|||+ |.+|+.+|..|+..+ .+++++|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 4689999999 999999999999666 589999993
No 208
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.74 E-value=5.7e-05 Score=67.99 Aligned_cols=75 Identities=23% Similarity=0.361 Sum_probs=54.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCc---
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNL--- 79 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--- 79 (297)
+++|.|||+|.+|+.+|..|+++| ++|++.||+.++++++.+... +.+.. +++ ..+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~---------~~vD~~d~~al 62 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEA---------LQVDAADVDAL 62 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------cccee---------EEecccChHHH
Confidence 368999999999999999999999 999999999998887732211 11111 111 1122
Q ss_pred -cccCCCcEEEEeccccHH
Q 022434 80 -KDLHSADIIVEAIVESED 97 (297)
Q Consensus 80 -~~~~~aD~Vi~~v~e~~~ 97 (297)
+.+++.|+||.++|....
T Consensus 63 ~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 63 VALIKDFDLVINAAPPFVD 81 (389)
T ss_pred HHHHhcCCEEEEeCCchhh
Confidence 226888999999987654
No 209
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.74 E-value=0.00017 Score=64.32 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=62.3
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++|+|||+|.+|...+..++. .+ .+|.+|+|++++.+++.+.+... .+. .+...++.++
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~------~~~-----------~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK------FNT-----------EIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh------cCC-----------cEEEeCCHHHH
Confidence 5789999999999998877653 45 47999999999888775544321 111 1234566555
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
++++|+||.|.|... .++. ..+++++.|....
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iG 221 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVG 221 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecC
Confidence 789999999998653 2332 3456676655443
No 210
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.73 E-value=5.6e-05 Score=69.62 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=50.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 82 (297)
.++|+|||+|.||..++..|...| .+|++++++.++.+...+. .|.. . ....+.. .+
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~----------~g~~----------~-i~~~~l~~~l 238 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE----------LGGE----------A-VKFEDLEEYL 238 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH----------cCCe----------E-eeHHHHHHHH
Confidence 368999999999999999999999 7899999998876544211 1210 0 1112333 36
Q ss_pred CCCcEEEEeccccH
Q 022434 83 HSADIIVEAIVESE 96 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~ 96 (297)
.++|+||.|++...
T Consensus 239 ~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 239 AEADIVISSTGAPH 252 (417)
T ss_pred hhCCEEEECCCCCC
Confidence 78999999986543
No 211
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.71 E-value=0.0008 Score=62.13 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=50.6
Q ss_pred cEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434 6 KVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~I~viG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
+||+|||+|.. +..+...|++. +-+|+++|+++++++......++. .+... ..-++..++|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~----~~~~g--------~~~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKIL----FKENY--------PEIKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHH----HHhhC--------CCeEEEEECCH
Confidence 58999999985 33344445443 468999999999988754443333 33211 11246778887
Q ss_pred cc-cCCCcEEEEec
Q 022434 80 KD-LHSADIIVEAI 92 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v 92 (297)
.+ +++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 76 99999999876
No 212
>PRK05086 malate dehydrogenase; Provisional
Probab=97.70 E-value=0.00029 Score=62.30 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=28.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHH---CCCcEEEEeCCHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVM---DGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~---~G~~V~~~d~~~~ 39 (297)
+||+|||+ |.+|..++..+.. .+++++++|+++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence 58999999 9999999998855 3468999999854
No 213
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.70 E-value=0.00019 Score=62.55 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=52.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc-ccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL-KDL 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 82 (297)
.+++.|+|+|.+|++++..|+..| .+|++++|+.++++.+.+.+.. .+ .+.+..+. +.+
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~ 183 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEEL 183 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhcc
Confidence 368999999999999999999999 7899999999887766433210 00 01121122 336
Q ss_pred CCCcEEEEeccccH
Q 022434 83 HSADIIVEAIVESE 96 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~ 96 (297)
.++|+||.|+|-..
T Consensus 184 ~~~DivInaTp~g~ 197 (278)
T PRK00258 184 ADFDLIINATSAGM 197 (278)
T ss_pred ccCCEEEECCcCCC
Confidence 78999999987544
No 214
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.70 E-value=0.001 Score=61.25 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=50.8
Q ss_pred cEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc
Q 022434 6 KVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~I~viG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
+||+|||+|.. ...+...|+.. +-+|+++|+++++++...+..++. .+... ..-++..++|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~----~~~~g--------~~~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRY----VEEVG--------ADIKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHH----HHhhC--------CCeEEEEeCCH
Confidence 48999999874 33445555543 468999999999988754444433 33211 11246678888
Q ss_pred cc-cCCCcEEEEec
Q 022434 80 KD-LHSADIIVEAI 92 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v 92 (297)
++ +++||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 76 99999999875
No 215
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.68 E-value=0.00044 Score=63.56 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=49.8
Q ss_pred cEEEEECCChhHH-HHHHHHHHC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434 6 KVMGVVGSGQMGS-GIAQLGVMD-----GLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN 78 (297)
Q Consensus 6 ~~I~viG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
+||+|||+|..-. .+...|+.. +-+|+++|++ +++++.....+++.. +... ..-++..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~----~~~~--------~~~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMV----KKAG--------LPIKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHH----HhhC--------CCeEEEEeCC
Confidence 4899999998733 344445542 3589999999 788776544444332 2211 0124567788
Q ss_pred ccc-cCCCcEEEEec
Q 022434 79 LKD-LHSADIIVEAI 92 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v 92 (297)
.++ +.+||+||.+.
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 876 89999999876
No 216
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.68 E-value=0.00022 Score=62.87 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=61.1
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+++++ .+. .+. .++.++
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~a 185 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAI 185 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHH
Confidence 4789999999999999999865 56 4699999999988877554321 111 112 345554
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
++++|+||.|.|.... ++.. .+++++.|...
T Consensus 186 v~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~i 216 (304)
T PRK07340 186 PEAVDLVVTATTSRTP----VYPE---AARAGRLVVAV 216 (304)
T ss_pred hhcCCEEEEccCCCCc----eeCc---cCCCCCEEEec
Confidence 8899999999987553 2321 34666655433
No 217
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.67 E-value=9.1e-05 Score=68.44 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=51.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 82 (297)
.++|+|||+|.||..++..|...|. +|+++++++++++.+.+. .|. ......+.. .+
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l 240 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE----------FGG-----------EAIPLDELPEAL 240 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH----------cCC-----------cEeeHHHHHHHh
Confidence 4689999999999999999999997 799999999876654211 121 001112333 36
Q ss_pred CCCcEEEEeccccH
Q 022434 83 HSADIIVEAIVESE 96 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~ 96 (297)
.++|+||.|++.+.
T Consensus 241 ~~aDvVI~aT~s~~ 254 (423)
T PRK00045 241 AEADIVISSTGAPH 254 (423)
T ss_pred ccCCEEEECCCCCC
Confidence 78999999987543
No 218
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.66 E-value=0.00027 Score=62.84 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=61.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCC-------CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCCcE
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDG-------LDVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAVGT-DAPRRLR 74 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~ 74 (297)
.||+|+|+ |.+|+.++..|+..+ .+|+++|+++. .++.. .+.-.+.. ....++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~---------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGV---------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccce---------------eeehhhccccccCCce
Confidence 48999999 999999999998855 58999999753 12211 00000000 1112344
Q ss_pred EecCc-cccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 75 CTSNL-KDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 75 ~~~~~-~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
...++ +++++||+||.+..- +..+.+++...+.+.++++++++.-|.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 45564 669999999976521 112234555667777766776554444
No 219
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.66 E-value=0.00012 Score=60.16 Aligned_cols=92 Identities=23% Similarity=0.398 Sum_probs=59.0
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMD--GLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
++|++||+|.+|..+...+... .++ |.+||++.+++..+.+. .+. ...+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~~-------------~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VGR-------------RCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cCC-------------CccccHHHH
Confidence 3799999999999999876653 354 77999999987765221 111 13367776
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
+++.|+++||...+. +++-+...|+. .-+.||. ++..+.
T Consensus 58 ~~~~DlvVEaAS~~A-v~e~~~~~L~~--g~d~iV~-SVGALa 96 (255)
T COG1712 58 IAEVDLVVEAASPEA-VREYVPKILKA--GIDVIVM-SVGALA 96 (255)
T ss_pred hhccceeeeeCCHHH-HHHHhHHHHhc--CCCEEEE-echhcc
Confidence 689999999986432 23322333333 2355665 455555
No 220
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.64 E-value=0.0004 Score=52.52 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=57.2
Q ss_pred EEEEECC-ChhHHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc--
Q 022434 7 VMGVVGS-GQMGSGIAQLGVMD-GLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-- 81 (297)
Q Consensus 7 ~I~viG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 81 (297)
||+|+|+ |.+|..++..+... ++++..+ +++.++.+.+.. ..+.+. .-+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~--------~~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLK--------GEVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccc--------cccccccccCChh
Confidence 5899995 99999999999885 8888766 654332222210 011000 00000111122
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
..++|+||.|+|.+... ++...+...+.++++++..++++.
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCcccc
Confidence 24899999999987653 333233344567888887777654
No 221
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.62 E-value=0.0002 Score=63.89 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=54.6
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++|+|||+|.+|...+..+.. .+ .+|.+|+|++++++.+.+.+++.+ |. .+...++.++
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g~-----------~v~~~~d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------GI-----------PVTVARDVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------Cc-----------eEEEeCCHHHH
Confidence 4689999999999998888875 45 579999999999888755443211 11 1234566655
Q ss_pred cCCCcEEEEeccccH
Q 022434 82 LHSADIIVEAIVESE 96 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~ 96 (297)
++++|+||.+.|...
T Consensus 195 l~~aDiVi~aT~s~~ 209 (330)
T PRK08291 195 VAGADIIVTTTPSEE 209 (330)
T ss_pred HccCCEEEEeeCCCC
Confidence 788999999987643
No 222
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.62 E-value=0.00011 Score=58.80 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=31.5
Q ss_pred CcEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHH
Q 022434 5 MKVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~m-G~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
-++|.|||+|.| |..+|..|.+.|.+|++.+++.+
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 478999999997 88899999999999999998854
No 223
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.61 E-value=0.0017 Score=48.42 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=59.4
Q ss_pred EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCc------c-
Q 022434 8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNL------K- 80 (297)
Q Consensus 8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~------~- 80 (297)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+ .+.|.. ....|. +
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-----------~~~~~~------------~i~gd~~~~~~l~~ 57 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL-----------REEGVE------------VIYGDATDPEVLER 57 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-----------HHTTSE------------EEES-TTSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-----------Hhcccc------------cccccchhhhHHhh
Confidence 5799999999999999999777999999999987776 344421 122221 1
Q ss_pred -ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434 81 -DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 81 -~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
.+++++.+|.+.+++.. ...+...+.+..+.-.+++...
T Consensus 58 a~i~~a~~vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 58 AGIEKADAVVILTDDDEE-NLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp TTGGCESEEEEESSSHHH-HHHHHHHHHHHTTTSEEEEEES
T ss_pred cCccccCEEEEccCCHHH-HHHHHHHHHHHCCCCeEEEEEC
Confidence 26789999999887654 3333334455455455665433
No 224
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.61 E-value=0.00036 Score=61.43 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=56.7
Q ss_pred CCcEEEEECCChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..++++|||+|.+|...+..++.- . -+|.+|+|++++.+++.+++++.+ | -.+...++.++
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHH
Confidence 357899999999999988877653 3 379999999999988765554211 2 12345667766
Q ss_pred -cCCCcEEEEeccccH
Q 022434 82 -LHSADIIVEAIVESE 96 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~ 96 (297)
+++||+|+.+.+...
T Consensus 179 av~~aDIV~taT~s~~ 194 (301)
T PRK06407 179 ALRDADTITSITNSDT 194 (301)
T ss_pred HHhcCCEEEEecCCCC
Confidence 899999999987654
No 225
>PLN00203 glutamyl-tRNA reductase
Probab=97.61 E-value=0.0001 Score=69.35 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=56.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 82 (297)
.++|+|||+|.||..++..|...|. +|++++|+.++++.+.+... +. . -.+...++.. .+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g~-~--------i~~~~~~dl~~al 327 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------DV-E--------IIYKPLDEMLACA 327 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------CC-c--------eEeecHhhHHHHH
Confidence 4789999999999999999999997 69999999988776532110 10 0 0001112333 37
Q ss_pred CCCcEEEEeccccH-HHHHHHHHHHH
Q 022434 83 HSADIIVEAIVESE-DVKKKLFSELD 107 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~-~~k~~~~~~l~ 107 (297)
.++|+||.|++... .+..+.++++.
T Consensus 328 ~~aDVVIsAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 328 AEADVVFTSTSSETPLFLKEHVEALP 353 (519)
T ss_pred hcCCEEEEccCCCCCeeCHHHHHHhh
Confidence 88999999975433 23445555543
No 226
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.58 E-value=0.0022 Score=54.45 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=74.4
Q ss_pred cEEe-cCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHH---HhhhcCCC-CeEEEeecCCCC
Q 022434 73 LRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR---LASATSRP-CQVIGMHFMNPP 147 (297)
Q Consensus 73 i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~---l~~~~~~~-~~~~g~h~~~p~ 147 (297)
+.++ +|.++++++|++|..+|-... ...+++++.+.+++++||+ ||.++++.. +.+.+.+. ..+...||-.-|
T Consensus 127 vkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 127 LKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred ceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 3444 455669999999999997652 2467888888999999987 777777653 44444322 234455554434
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 148 ~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v 183 (297)
..-..+-++.+ -.+++.++++.++.+..++.++.+
T Consensus 205 gt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 205 EMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeec
Confidence 32233444444 368899999999999999999876
No 227
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.58 E-value=0.00036 Score=60.91 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=37.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATK 46 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 46 (297)
-+++.|||+|.+|++++..|+..|. +|++++|++++.+.+.+
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3589999999999999999999997 69999999988776643
No 228
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.57 E-value=0.0013 Score=54.50 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=74.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cC--ccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SN--LKD 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--~~~ 81 (297)
-++|.|||+|.+|..-+..|++.|.+|++++.+... .. ..+.+.|.+ .+. .+ .++
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~l--------~~l~~~~~i------------~~~~~~~~~~d 66 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--EL--------TLLAEQGGI------------TWLARCFDADI 66 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--HH--------HHHHHcCCE------------EEEeCCCCHHH
Confidence 468999999999999999999999999999886541 11 112333332 221 12 234
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecCC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA 159 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~~ 159 (297)
+.++++||.+.. +.++...+..... ...+.+...+. |+. ..|+.|.. ..++.--+.+.
T Consensus 67 l~~~~lVi~at~-d~~ln~~i~~~a~----~~~ilvn~~d~------------~e~---~~f~~pa~~~~g~l~iaisT~ 126 (205)
T TIGR01470 67 LEGAFLVIAATD-DEELNRRVAHAAR----ARGVPVNVVDD------------PEL---CSFIFPSIVDRSPVVVAISSG 126 (205)
T ss_pred hCCcEEEEECCC-CHHHHHHHHHHHH----HcCCEEEECCC------------ccc---CeEEEeeEEEcCCEEEEEECC
Confidence 789999998854 4444454444332 22333312211 111 23334432 22333335556
Q ss_pred CCcHHHHHHHHHHHHH
Q 022434 160 DTSDETFRATKALAER 175 (297)
Q Consensus 160 ~~~~~~~~~~~~ll~~ 175 (297)
+.+|.....+++-++.
T Consensus 127 G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 127 GAAPVLARLLRERIET 142 (205)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 6788777777666554
No 229
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.56 E-value=0.00023 Score=66.69 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=51.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
.++++|+|+|.+|.+++..|++.|++|++++|++++.+...+... ... ....+..++.+
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~--------~~~-------------~~~~~~~~l~~ 390 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ--------GKA-------------FPLESLPELHR 390 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------cce-------------echhHhcccCC
Confidence 368999999999999999999999999999999887665422110 000 00122233568
Q ss_pred CcEEEEeccccH
Q 022434 85 ADIIVEAIVESE 96 (297)
Q Consensus 85 aD~Vi~~v~e~~ 96 (297)
+|+||.|+|...
T Consensus 391 ~DiVInatP~g~ 402 (477)
T PRK09310 391 IDIIINCLPPSV 402 (477)
T ss_pred CCEEEEcCCCCC
Confidence 999999998765
No 230
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.55 E-value=0.00064 Score=60.18 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=62.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..++++|||+|.++...+..+... --+|.+|+|++++.+++.+.++ +.+ -.+...++.++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-----------~~v~~~~~~~~ 188 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-----------FAVNTTLDAAE 188 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-----------CcEEEECCHHH
Confidence 357899999999999998877653 2479999999999887754432 112 12344666665
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
+++||+|+.+.+.... ++. .+++++++.|...
T Consensus 189 av~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~i 221 (315)
T PRK06823 189 VAHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAV 221 (315)
T ss_pred HhcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEec
Confidence 8999999999875443 221 1345666655433
No 231
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.55 E-value=0.0028 Score=53.66 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=72.9
Q ss_pred cEEe-cCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhh---cCCC-CeEEEeecCCCC
Q 022434 73 LRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA---TSRP-CQVIGMHFMNPP 147 (297)
Q Consensus 73 i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~---~~~~-~~~~g~h~~~p~ 147 (297)
+.++ +|.++++++|++|..+|-... ...+++++.+.+++++||+ ||.++++..+... +.+. ..+...||-.-|
T Consensus 129 vkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 129 LKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred ceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 3444 556669999999999997653 2467888888999999987 7777777544433 3321 224445554434
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEe
Q 022434 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 148 ~~~~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v 183 (297)
..-+.+-+-. .-.+++.++++.++.+..++.++.+
T Consensus 207 gt~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 207 EMKGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred CCCCceeccc-ccCCHHHHHHHHHHHHHhCCCeeec
Confidence 2222222222 2368899999999999999999876
No 232
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.54 E-value=0.00047 Score=66.14 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=61.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc--ccC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK--DLH 83 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~ 83 (297)
.+|.|+|+|.+|..+|..|.+.|++|+++|.|+++.+.+ .+.|.. ...+...-.+.++ .++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~-----------~~~g~~------~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL-----------RERGIR------AVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HHCCCe------EEEcCCCCHHHHHhcCcc
Confidence 578999999999999999999999999999999988776 223321 0000000001112 267
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
++|.++.+++++.+.. .+...+....+.-.|++.
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 8999999998876533 233334444444455554
No 233
>PRK06046 alanine dehydrogenase; Validated
Probab=97.54 E-value=0.00041 Score=61.82 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=60.9
Q ss_pred CCcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..++|+|||+|.+|...+..+.. .+. .|.+||+++++.+++.+.+.+. .+ ..+...++.++
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHH
Confidence 35789999999999999988874 343 6889999999888775543211 01 11234566666
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
++ +|+|+.|.|.... ++. .+++++++.|.+..
T Consensus 191 ~l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iG 223 (326)
T PRK06046 191 ACD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIG 223 (326)
T ss_pred Hhh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecC
Confidence 55 9999999986432 221 13456666555333
No 234
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.54 E-value=0.00014 Score=59.89 Aligned_cols=43 Identities=33% Similarity=0.357 Sum_probs=37.3
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS 47 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (297)
-+++.|+|+ |.+|..++..|++.|++|++++|+.++++...+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~ 71 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS 71 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 368999996 9999999999999999999999998877665433
No 235
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00067 Score=60.03 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..+.++|||+|.++......+..- --+|.+|+|+++..+++...+++. +. ..+...++.++
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHH
Confidence 357899999999999999887652 348999999999988875554322 11 12345666665
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|+|....+ +. .+++++++-|....+
T Consensus 192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa 226 (330)
T COG2423 192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA 226 (330)
T ss_pred HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence 89999999999876532 11 245566766654333
No 236
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.53 E-value=0.0012 Score=63.76 Aligned_cols=130 Identities=19% Similarity=0.198 Sum_probs=81.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec---C---c
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS---N---L 79 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~---~ 79 (297)
.+|.|+|.|.+|..++..|.+.|++++++|.|+++++.+ .+.|.. .... + +
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-----------~~~g~~------------v~~GDat~~~~L 457 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLM-----------RKYGYK------------VYYGDATQLELL 457 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH-----------HhCCCe------------EEEeeCCCHHHH
Confidence 579999999999999999999999999999999988766 223321 1111 1 1
Q ss_pred c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceEEEec
Q 022434 80 K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIR 157 (297)
Q Consensus 80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vei~~ 157 (297)
+ .+++||.+|.+++++... ..+...+.+..+.-.|++...+......+.+ .|... +++
T Consensus 458 ~~agi~~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~--------~Ga~~-----------vv~ 517 (601)
T PRK03659 458 RAAGAEKAEAIVITCNEPEDT-MKIVELCQQHFPHLHILARARGRVEAHELLQ--------AGVTQ-----------FSR 517 (601)
T ss_pred HhcCCccCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHh--------CCCCE-----------EEc
Confidence 2 267899999999887643 3344445555555567765444322233322 12211 121
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeE
Q 022434 158 GADTSDETFRATKALAERFGKTV 180 (297)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~lg~~~ 180 (297)
- +-+...+.....+..+|..+
T Consensus 518 e--~~es~l~l~~~~L~~lg~~~ 538 (601)
T PRK03659 518 E--TFSSALELGRKTLVSLGMHP 538 (601)
T ss_pred c--HHHHHHHHHHHHHHHcCCCH
Confidence 1 34455666677777777644
No 237
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.50 E-value=0.00038 Score=59.90 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=46.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+||+|+|+ |.||..++..+.+. +++++ ++|+++++.... +. ..+...+++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 58999998 99999999888764 67766 578887543221 00 11224466665
Q ss_pred cCCCcEEEEeccccH
Q 022434 82 LHSADIIVEAIVESE 96 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~ 96 (297)
++++|+||++.+.+.
T Consensus 58 l~~~DvVid~t~p~~ 72 (257)
T PRK00048 58 LADADVLIDFTTPEA 72 (257)
T ss_pred ccCCCEEEECCCHHH
Confidence 568999998886544
No 238
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.50 E-value=0.00022 Score=64.59 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=37.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRAT 45 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~ 45 (297)
-++|.|||+|-||...|.+|+.+| .+|++.+|+.+++..+.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 468999999999999999999999 68999999999887764
No 239
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.47 E-value=0.00051 Score=56.90 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~ 37 (297)
.+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 589999999999999999999997 89999987
No 240
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.46 E-value=0.00035 Score=56.58 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=32.5
Q ss_pred EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022434 8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALV 42 (297)
Q Consensus 8 I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 42 (297)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc
Confidence 789997 99999999999999999999999998655
No 241
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.46 E-value=0.00062 Score=60.33 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=55.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..++++|||+|..+..-+..++. .+ -+|.+|+|++++.+++.+.+++ .+ -.+...++.++
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~ 188 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEE 188 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhh
Confidence 35789999999999998887655 44 3799999999988887655432 11 23456677766
Q ss_pred -cCCCcEEEEeccccH--HHHHHHHHHHHhhcCCCeEEEecCC
Q 022434 82 -LHSADIIVEAIVESE--DVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~--~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|.+... .+ +. .+++++++.|....+
T Consensus 189 av~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 189 AVRGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGS 225 (313)
T ss_dssp HHTTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-
T ss_pred hcccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecC
Confidence 899999999987654 22 11 235667776654444
No 242
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.44 E-value=0.00095 Score=59.71 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
++|.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999999999999999998 899999985
No 243
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.43 E-value=0.0021 Score=59.93 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=36.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|+|.|+|+|.+|..++..|.+.|++|+++|+++++++.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 479999999999999999999999999999999887765
No 244
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.43 E-value=0.00029 Score=64.69 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=51.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc-cc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK-DL 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 82 (297)
-++|.|||+|.||..++..|+..|. ++++++|+.++.+.+.+.+ +. ......++.. .+
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~----------~~----------~~~~~~~~l~~~l 240 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF----------RN----------ASAHYLSELPQLI 240 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh----------cC----------CeEecHHHHHHHh
Confidence 3689999999999999999999995 7999999988776653221 10 0001123333 37
Q ss_pred CCCcEEEEeccccH
Q 022434 83 HSADIIVEAIVESE 96 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~ 96 (297)
.++|+||.|++.+.
T Consensus 241 ~~aDiVI~aT~a~~ 254 (414)
T PRK13940 241 KKADIIIAAVNVLE 254 (414)
T ss_pred ccCCEEEECcCCCC
Confidence 78999999886543
No 245
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.42 E-value=0.0062 Score=59.75 Aligned_cols=95 Identities=14% Similarity=0.073 Sum_probs=71.2
Q ss_pred EEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--HHHHhhhcCC-CCeEEEeecCCCCCCCc------------e
Q 022434 88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMNPPPLMK------------L 152 (297)
Q Consensus 88 Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~p~~~~~------------~ 152 (297)
||.|+|-. ...+++.++.+.++++++|...+|+-. ...+.+.+.. ..+|+|.||+..+...+ .
T Consensus 1 vila~Pv~--~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVA--QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHH--HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 57888844 356888999999999999876666543 2455555442 25799999998775433 3
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 153 vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
+-+++...++++.+++++++++.+|.+++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 55777778899999999999999999998774
No 246
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00069 Score=58.74 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=38.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSI 48 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~ 48 (297)
++|.|+|+|-++++++..|++.|. ++++++|+.++.+++.+.+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~ 170 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF 170 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 689999999999999999999995 7999999999988775443
No 247
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.39 E-value=0.00073 Score=61.59 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=33.7
Q ss_pred cEEEEECCChhHHHH-HHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGI-AQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~i-A~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|||.++|+|.||++. ...|.++|++|+++|++++.++.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 479999999999955 788999999999999988866665
No 248
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.35 E-value=0.00052 Score=62.21 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=35.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
..+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3579999999999999999999999999999998876654
No 249
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.35 E-value=0.0012 Score=56.38 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=45.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCC---CcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDG---LDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
+||+|||+|.||..++..+.+.+ +++. ++++++++.+.+ ... ....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~-----------~~~--------------~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL-----------AGR--------------VALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh-----------hcc--------------CcccCCHHH
Confidence 68999999999999999987643 4543 678887655443 111 135566776
Q ss_pred --cCCCcEEEEeccc
Q 022434 82 --LHSADIIVEAIVE 94 (297)
Q Consensus 82 --~~~aD~Vi~~v~e 94 (297)
....|+|+||...
T Consensus 58 ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 58 LLAWRPDLVVEAAGQ 72 (267)
T ss_pred HhhcCCCEEEECCCH
Confidence 3679999999863
No 250
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.34 E-value=0.0042 Score=49.19 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=30.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
-++|.|||+|.+|...+..|.+.|++|++++++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 478999999999999999999999999999643
No 251
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.29 E-value=0.001 Score=50.28 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=55.4
Q ss_pred EEEEEC-CChhHHHHHHHHHHCC-Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec-Ccccc
Q 022434 7 VMGVVG-SGQMGSGIAQLGVMDG-LD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS-NLKDL 82 (297)
Q Consensus 7 ~I~viG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 82 (297)
||+||| .|++|..+...|+++= ++ +.++.++.+.-...... .. .......+.+.+ +.+++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEV--------FP--------HPKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHT--------TG--------GGTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehh--------cc--------ccccccceeEeecchhHh
Confidence 799999 6999999999999852 34 44566665211111000 00 000011223333 44558
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
+++|+||.|+|... ..++...+ .+.++.|+.+++..
T Consensus 65 ~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 65 SDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp TTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTT
T ss_pred hcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHH
Confidence 99999999998654 33444443 45667777777654
No 252
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.27 E-value=0.002 Score=57.64 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=53.6
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++++|||+|..+...+..++. .. .+|.+|+|++++.+++.+++++ .+ -.+...++.++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHH
Confidence 5789999999999888776544 23 4899999999998887655432 11 12345677776
Q ss_pred cCCCcEEEEeccc
Q 022434 82 LHSADIIVEAIVE 94 (297)
Q Consensus 82 ~~~aD~Vi~~v~e 94 (297)
+++||+|+.+.+.
T Consensus 191 v~~ADIIvtaT~S 203 (346)
T PRK07589 191 VEGADIITTVTAD 203 (346)
T ss_pred HhcCCEEEEecCC
Confidence 8999999999974
No 253
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.26 E-value=0.0023 Score=55.35 Aligned_cols=74 Identities=15% Similarity=0.313 Sum_probs=44.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHH-CCCcEE-EEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVG-SGQMGSGIAQLGVM-DGLDVW-LVDTD-PDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG-~G~mG~~iA~~l~~-~G~~V~-~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
.||+|+| +|.||..++..+.. .+++++ ++|+. ++....- . ..+ .+. ....+.+.+++++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~---~----~~~--~~~--------~~~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTD---A----GEL--AGI--------GKVGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCC---H----HHh--cCc--------CcCCceeeCCHHH
Confidence 5899999 59999999999886 578766 56843 3221100 0 000 010 0011345667766
Q ss_pred c-CCCcEEEEeccccH
Q 022434 82 L-HSADIIVEAIVESE 96 (297)
Q Consensus 82 ~-~~aD~Vi~~v~e~~ 96 (297)
+ ..+|+||++.+...
T Consensus 65 l~~~~DvVIdfT~p~~ 80 (266)
T TIGR00036 65 VETDPDVLIDFTTPEG 80 (266)
T ss_pred hcCCCCEEEECCChHH
Confidence 4 46899999986533
No 254
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.25 E-value=0.0037 Score=60.62 Aligned_cols=91 Identities=18% Similarity=0.282 Sum_probs=62.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe---cCc--
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT---SNL-- 79 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~-- 79 (297)
.++|-|+|.|.+|..++..|.+.|++++++|.|+++++.++ +.|.. .+. ++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~-----------~~g~~------------v~~GDat~~~~ 456 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLR-----------KFGMK------------VFYGDATRMDL 456 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHH-----------hcCCe------------EEEEeCCCHHH
Confidence 36799999999999999999999999999999999887762 22321 111 122
Q ss_pred -c--ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434 80 -K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 80 -~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
+ .++++|.+|.++.++.. ...+...+.+..+.-.+++..
T Consensus 457 L~~agi~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 457 LESAGAAKAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred HHhcCCCcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEEEE
Confidence 2 26789999999977654 233333444544444566543
No 255
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.24 E-value=0.00087 Score=46.58 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=32.6
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987655
No 256
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.19 E-value=0.002 Score=55.68 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=44.1
Q ss_pred cEEEEECCChhHHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc-
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMD-GLDVWL-VDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL- 82 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 82 (297)
+||+|||+|.||..++..+.+. +.++.. ++++.. .+...+. ... .+...+|++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~~-------------~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LGE-------------AVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hcc-------------CCeeeCCHHHhc
Confidence 5899999999999999998875 566553 344322 1111000 111 12456666664
Q ss_pred CCCcEEEEeccccH
Q 022434 83 HSADIIVEAIVESE 96 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~ 96 (297)
.+.|+|++|.+...
T Consensus 60 ~~~DvVve~t~~~~ 73 (265)
T PRK13303 60 QRPDLVVECAGHAA 73 (265)
T ss_pred cCCCEEEECCCHHH
Confidence 56899999998654
No 257
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.19 E-value=0.0034 Score=58.51 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=37.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|+|+|.+|..++..|.+.|++|+++|.++++.+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~ 270 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEEL 270 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 4789999999999999999999999999999999887765
No 258
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.18 E-value=0.003 Score=59.33 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=37.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
-.+|.|+|+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a 204 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV 204 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4689999999999999999999999999999999988876
No 259
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.18 E-value=0.0012 Score=60.01 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCcEEEEECCChhHHHHHHHHHH-C-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVM-D-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~-~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
..++++|||+|.++...+..++. . . -+|.+|+|++++++++.+++.+.+. |. ..+...++.+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~ 218 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIE 218 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHH
Confidence 35789999999999999988776 2 2 3899999999998887655442210 10 1245567776
Q ss_pred c-cCCCcEEEEeccc
Q 022434 81 D-LHSADIIVEAIVE 94 (297)
Q Consensus 81 ~-~~~aD~Vi~~v~e 94 (297)
+ +++||+|+.|.+.
T Consensus 219 eav~~ADIVvtaT~s 233 (379)
T PRK06199 219 EVVRGSDIVTYCNSG 233 (379)
T ss_pred HHHcCCCEEEEccCC
Confidence 6 8999999998864
No 260
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.16 E-value=0.0022 Score=57.42 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999998 899999874
No 261
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.12 E-value=0.0044 Score=55.59 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=49.1
Q ss_pred cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCCcEEecCccc-
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGT-DAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~- 81 (297)
.||+|+|+|.||..++..+... +++|+ +.|++++..+.+.++. .++. .+.. +.... .....+.+..+.++
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~-~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVAD-PEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccC-ccccccccCCceEEcCChhHh
Confidence 5899999999999999987754 56766 4566654433321110 0000 0000 00000 00123455556665
Q ss_pred cCCCcEEEEeccccHH
Q 022434 82 LHSADIIVEAIVESED 97 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~ 97 (297)
..++|+||+|.+....
T Consensus 76 ~~~vDVVIdaT~~~~~ 91 (341)
T PRK04207 76 LEKADIVVDATPGGVG 91 (341)
T ss_pred hccCCEEEECCCchhh
Confidence 5789999999986654
No 262
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.11 E-value=0.0011 Score=57.00 Aligned_cols=97 Identities=24% Similarity=0.352 Sum_probs=52.5
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCc---
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNL--- 79 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 79 (297)
++|++||.|.+-...-...... |..|..+|+++++.+.+++-+...+. ++ .++++. .|.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999977665554444 45788999999988877554442211 11 222332 222
Q ss_pred -cccCCCcEEEEeccc--cHHHHHHHHHHHHhhcCCCeEEE
Q 022434 80 -KDLHSADIIVEAIVE--SEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 80 -~~~~~aD~Vi~~v~e--~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
.+++++|+|+.+.-- +.+-|++++..|.+.++++++++
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 236789999987632 33358999999999999998766
No 263
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.10 E-value=0.01 Score=55.33 Aligned_cols=38 Identities=37% Similarity=0.352 Sum_probs=33.9
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|..+.++|.|+|+|..|.++|..|++.|++|+++|++.
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 43345799999999999999999999999999999985
No 264
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.10 E-value=0.0026 Score=55.21 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=51.4
Q ss_pred CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|.|||.|. +|.++|..|...|..|+++++....++. .++
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~-------------------------------------~~~ 200 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMAS-------------------------------------YLK 200 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHH-------------------------------------HHh
Confidence 47999999988 9999999999999999999875422211 145
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
+||+||.+++-..-+.. +.++++++++.
T Consensus 201 ~ADIVIsAvg~p~~i~~-------~~vk~gavVID 228 (286)
T PRK14175 201 DADVIVSAVGKPGLVTK-------DVVKEGAVIID 228 (286)
T ss_pred hCCEEEECCCCCcccCH-------HHcCCCcEEEE
Confidence 89999999975432222 24566777663
No 265
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.09 E-value=0.0051 Score=53.74 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=55.6
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN 78 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
|+++ .||+|||+|.+|..+...+.+ .+.++. ++|+++++.... . ..+.|.- ...++
T Consensus 1 ~m~k-lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla--~-------A~~~Gi~------------~~~~~ 58 (302)
T PRK08300 1 MMSK-LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLA--R-------ARRLGVA------------TSAEG 58 (302)
T ss_pred CCCC-CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHH--H-------HHHcCCC------------cccCC
Confidence 5544 589999999999997777765 356766 678988643211 0 0223321 11233
Q ss_pred ccc------cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 022434 79 LKD------LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122 (297)
Q Consensus 79 ~~~------~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 122 (297)
++. ..+.|+|+++.+.... .+.... ....++.++.+++.
T Consensus 59 ie~LL~~~~~~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA 103 (302)
T PRK08300 59 IDGLLAMPEFDDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPA 103 (302)
T ss_pred HHHHHhCcCCCCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCcc
Confidence 333 2568999999987554 223222 23345555556553
No 266
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.07 E-value=0.00081 Score=58.60 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=36.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKS 47 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 47 (297)
+++.|+|+|-.+++++..|++.|. +++++||+.++.+.+.+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 689999999999999999999996 799999999887766433
No 267
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.03 E-value=0.0047 Score=43.56 Aligned_cols=32 Identities=41% Similarity=0.581 Sum_probs=29.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDT 36 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~~~d~ 36 (297)
.++++|+|+|.+|.+++..+.+. +.+|.+||+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 47899999999999999999998 578999986
No 268
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.02 E-value=0.0017 Score=54.74 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCc---EEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLD---VWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~---V~~~d~~ 37 (297)
++|.|+|+|.+|+++|..|...|.. ++++||+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 6899999999999999999999974 9999999
No 269
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.01 E-value=0.0031 Score=49.07 Aligned_cols=31 Identities=35% Similarity=0.436 Sum_probs=29.0
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD 37 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~ 37 (297)
+|.|||+|.+|+.++..|+..|+ +++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 69999977
No 270
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.99 E-value=0.015 Score=48.67 Aligned_cols=128 Identities=15% Similarity=0.096 Sum_probs=72.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCc--c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNL--K 80 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--~ 80 (297)
-++|.|||.|.++..=+..|++.|.+|+++.++-. .+.. +.+.|.+ ++. .++ +
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i------------~~~~r~~~~~ 81 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNL------------KLIKGNYDKE 81 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCE------------EEEeCCCChH
Confidence 36899999999999999999999999999976532 1211 1333432 221 222 3
Q ss_pred ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecC
Q 022434 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRG 158 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~ 158 (297)
++.++++||.|+. +.++-+.+. ..++...+++.+... |.. ..|+.|.. ..++.--+.+
T Consensus 82 dl~g~~LViaATd-D~~vN~~I~----~~a~~~~~lvn~vd~------------p~~---~dFi~PAiv~rg~l~IaIST 141 (223)
T PRK05562 82 FIKDKHLIVIATD-DEKLNNKIR----KHCDRLYKLYIDCSD------------YKK---GLCIIPYQRSTKNFVFALNT 141 (223)
T ss_pred HhCCCcEEEECCC-CHHHHHHHH----HHHHHcCCeEEEcCC------------ccc---CeEEeeeEEecCCEEEEEEC
Confidence 4889999999865 454444443 344332333322211 111 23444542 2233334555
Q ss_pred CCCcHHHHHHHHHHHHH
Q 022434 159 ADTSDETFRATKALAER 175 (297)
Q Consensus 159 ~~~~~~~~~~~~~ll~~ 175 (297)
.+.+|.....+++-++.
T Consensus 142 ~G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 142 KGGSPKTSVFIGEKVKN 158 (223)
T ss_pred CCcCcHHHHHHHHHHHH
Confidence 56677766666655543
No 271
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.99 E-value=0.0037 Score=46.85 Aligned_cols=80 Identities=19% Similarity=0.379 Sum_probs=52.6
Q ss_pred cEEEEEC----CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 6 KVMGVVG----SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~I~viG----~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+||| -+..|.-+...|.++|++|+.++...+.+ ..+.+..++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5899999 58999999999999999999998775322 11245666665
Q ss_pred c-CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434 82 L-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 82 ~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
. ...|+++.++|.+. ..++++++.+.- ...+++
T Consensus 52 ~p~~iDlavv~~~~~~--~~~~v~~~~~~g-~~~v~~ 85 (116)
T PF13380_consen 52 IPEPIDLAVVCVPPDK--VPEIVDEAAALG-VKAVWL 85 (116)
T ss_dssp CSST-SEEEE-S-HHH--HHHHHHHHHHHT--SEEEE
T ss_pred CCCCCCEEEEEcCHHH--HHHHHHHHHHcC-CCEEEE
Confidence 4 68999999998543 446777766542 344444
No 272
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.96 E-value=0.0028 Score=55.82 Aligned_cols=91 Identities=30% Similarity=0.317 Sum_probs=64.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
-+++.|.|.|-.|+++|..+...|.+|.+++.+|-++-.+ ..+-+.+..-.++++.
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~ 264 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKT 264 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhc
Confidence 3678899999999999999999999999999999653222 1122345555555788
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
+|++|.+.-..-.+..+-+. .++.++|++ |.....
T Consensus 265 gDifiT~TGnkdVi~~eh~~----~MkDgaIl~-N~GHFd 299 (420)
T COG0499 265 GDIFVTATGNKDVIRKEHFE----KMKDGAILA-NAGHFD 299 (420)
T ss_pred CCEEEEccCCcCccCHHHHH----hccCCeEEe-cccccc
Confidence 99999998765444444333 356777776 665443
No 273
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.96 E-value=0.0054 Score=53.93 Aligned_cols=41 Identities=32% Similarity=0.392 Sum_probs=36.1
Q ss_pred CCC-CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434 1 MEE-KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 1 M~~-~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
|+. ..++|+|-|+ |.+|+.|...|+++||.|...-|+++..
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~ 43 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDE 43 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchh
Confidence 443 4679999999 9999999999999999999999998863
No 274
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.96 E-value=0.003 Score=55.72 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=45.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDP-DALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..||+|||+|+||..++..+.++ +++++ ++|+++ +++.. ..+. ....+.++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~v-------------~~~~d~~e 56 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETPV-------------YAVADDEK 56 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCCc-------------cccCCHHH
Confidence 36999999999999999988765 78877 579985 32210 0111 11223333
Q ss_pred -cCCCcEEEEeccccHH
Q 022434 82 -LHSADIIVEAIVESED 97 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~ 97 (297)
+.++|+|+.|.|....
T Consensus 57 ~l~~iDVViIctPs~th 73 (324)
T TIGR01921 57 HLDDVDVLILCMGSATD 73 (324)
T ss_pred hccCCCEEEEcCCCccC
Confidence 5679999999987654
No 275
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.93 E-value=0.0066 Score=61.56 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=51.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCC-Cc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDG-LD-------------VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDA 69 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G-~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 69 (297)
.+++|+|||+|.||...|..|++.. ++ |++.|++.++++++.+.. .+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~~--------- 629 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------ENA--------- 629 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CCC---------
Confidence 4679999999999999999998753 34 999999988776552210 010
Q ss_pred CCCcEE-ecCccc----cCCCcEEEEeccccHH
Q 022434 70 PRRLRC-TSNLKD----LHSADIIVEAIVESED 97 (297)
Q Consensus 70 ~~~i~~-~~~~~~----~~~aD~Vi~~v~e~~~ 97 (297)
.-+.. .+|.++ ++++|+||.|+|....
T Consensus 630 -~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 630 -EAVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred -ceEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 01122 234333 3679999999998654
No 276
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.92 E-value=0.00066 Score=62.02 Aligned_cols=37 Identities=35% Similarity=0.592 Sum_probs=31.9
Q ss_pred EEEECCChhHHHHHHHHHHCC-C-cEEEEeCCHHHHHHH
Q 022434 8 MGVVGSGQMGSGIAQLGVMDG-L-DVWLVDTDPDALVRA 44 (297)
Q Consensus 8 I~viG~G~mG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~ 44 (297)
|.|+|+|.+|+.++..|++.+ + +|++.||+.+++++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~ 39 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERL 39 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH
Confidence 789999999999999999987 4 899999999988776
No 277
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.90 E-value=0.082 Score=46.10 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=36.9
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
+-.+++|+|+|.+|.+.++-...+|. +++.+|.|+++.+.+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~a 233 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKA 233 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHH
Confidence 34689999999999999999999885 799999999998877
No 278
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.054 Score=47.28 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcccc
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
+-++|+|+|+|-+| .||..+++ -|++|+++|++..+-+++.+ ..
T Consensus 181 pG~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea~~----------~L------------------------ 225 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEAIK----------SL------------------------ 225 (360)
T ss_pred CCcEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHHHH----------hc------------------------
Confidence 45789999998888 45555555 59999999999755444411 12
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCC-------CCCCCceEEE
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMN-------PPPLMKLVEV 155 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~-------p~~~~~~vei 155 (297)
+||+.|.+.- +.+..+.+...+.-. .+++ +|-+..+.+.+...+....+++-+-.-. .|.....+.|
T Consensus 226 -GAd~fv~~~~-d~d~~~~~~~~~dg~--~~~v--~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I 299 (360)
T KOG0023|consen 226 -GADVFVDSTE-DPDIMKAIMKTTDGG--IDTV--SNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSI 299 (360)
T ss_pred -CcceeEEecC-CHHHHHHHHHhhcCc--ceee--eeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEE
Confidence 3555555542 222222222221110 1111 1224445555555554444443332211 1222334556
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCCeE-EEeccchhhhHHHHHHHHHHHHHHHHHcCCC
Q 022434 156 IRGADTSDETFRATKALAERFGKTV-VCSQDYAGFIVNRILMPMINEAFFTLYTGVA 211 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~lg~~~-i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~ 211 (297)
..+.-++....+.+.+|+.+-.-++ +.+- -...+|||+..+++|.+
T Consensus 300 ~GS~vG~~ket~E~Ldf~a~~~ik~~IE~v----------~~~~v~~a~erm~kgdV 346 (360)
T KOG0023|consen 300 KGSIVGSRKETQEALDFVARGLIKSPIELV----------KLSEVNEAYERMEKGDV 346 (360)
T ss_pred EeeccccHHHHHHHHHHHHcCCCcCceEEE----------ehhHHHHHHHHHHhcCe
Confidence 6666677777777778877644333 2211 12337888888888754
No 279
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.88 E-value=0.019 Score=51.73 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=33.7
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
+|.|+|+|.+|...+..+...|. +|++.|+++++++.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A 209 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELA 209 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH
Confidence 79999999999998888888884 677889999999887
No 280
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.86 E-value=0.0046 Score=53.83 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=30.7
Q ss_pred CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCH
Q 022434 5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
-++|.|||.|. .|+++|..|...|..|+++++..
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t 193 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT 193 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 47899999997 99999999999999999999743
No 281
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.034 Score=46.16 Aligned_cols=179 Identities=12% Similarity=0.159 Sum_probs=98.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
...|++||.|..|........+.++....+ .+++...+.+ .+.-.. ...+.+. .
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~L-----------aE~~~a-------------~p~d~~~~a 65 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNL-----------AETYVA-------------PPLDVAKSA 65 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhc-----------hhccCC-------------CccchhhCh
Confidence 357999999999999776666665555433 4555544332 111000 0111222 3
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCC-CeEEEeecCCCCC-----CCceE-EE
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRP-CQVIGMHFMNPPP-----LMKLV-EV 155 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~-~~~~g~h~~~p~~-----~~~~v-ei 155 (297)
+-.+++|..+|++.- ..+.. ...-.+++|++.++...... |...+.+. .--..+||..--. ..++- .+
T Consensus 66 el~~~vfv~vpd~~~--s~vaa--~~~~rpg~iv~HcSga~~~~-il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~ 140 (289)
T COG5495 66 ELLLLVFVDVPDALY--SGVAA--TSLNRPGTIVAHCSGANGSG-ILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTI 140 (289)
T ss_pred hhhceEEecchHHHH--HHHHH--hcccCCCeEEEEccCCCchh-hhhhhhhcCCcceeecccccccCCHHHHHhCcccE
Confidence 346788888886632 22222 23446888888654433333 33333322 2235566632111 11111 12
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchh-------hhHHHHHHHHHHHHHHHHHcCCCC
Q 022434 156 IRGADTSDETFRATKALAERFGKTVVCSQDYAG-------FIVNRILMPMINEAFFTLYTGVAT 212 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g-------~i~nri~~~~~~Ea~~l~~~g~~~ 212 (297)
+....++.--+..++.+...+|.+++.+.+... -.+.+.+...+.++..++...+.|
T Consensus 141 ~~i~eaD~~g~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~D 204 (289)
T COG5495 141 FGITEADDVGYAIVQSLALEMGGEPFCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDD 204 (289)
T ss_pred EEeecccccccHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence 233335566667778899999999998865432 144555667778888888764444
No 282
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.84 E-value=0.026 Score=47.70 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=29.0
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
||.|||+|..|+.++..|+..|+ +++++|.|.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999997 788998764
No 283
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.84 E-value=0.0015 Score=60.20 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999875
No 284
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.83 E-value=0.011 Score=55.53 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=35.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.+|.|+|+|.+|...+..+...|..|+++|+++++++.+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a 203 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 203 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 689999999999999999999999999999999987665
No 285
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.83 E-value=0.0057 Score=52.99 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=35.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
+++.|+|+|-.+++++..|++.|. +|++++|++++.+.+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999877665
No 286
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.80 E-value=0.0057 Score=53.47 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=31.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 39 (297)
+++.|+|+|..+++++..|+..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 589999999999999999999996 8999999964
No 287
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.79 E-value=0.0026 Score=55.77 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=31.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~ 39 (297)
.+++.|+|+|..|++++..|+..|.+ |++++|+++
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 35789999999999999999999986 999999973
No 288
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=96.78 E-value=0.092 Score=46.32 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=89.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---hhhhcccCCCcEEecCcc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLS---QAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~i~~~~~~~ 80 (297)
-.+|+|+|+|.+|.+-.+.+..+|. .++.+|+++++++.+ .+.|+.. +.+.+. +..-..
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A-----------~~fGAT~~vn~~~~~~------vv~~i~ 248 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELA-----------KKFGATHFVNPKEVDD------VVEAIV 248 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHH-----------HhcCCceeecchhhhh------HHHHHH
Confidence 3589999999999999999999886 688899999999887 5566531 000000 000001
Q ss_pred c-cC-CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc--H-HHHhhhcCCCCeEEEeecCCCCCCCceEEE
Q 022434 81 D-LH-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--I-TRLASATSRPCQVIGMHFMNPPPLMKLVEV 155 (297)
Q Consensus 81 ~-~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~-~~l~~~~~~~~~~~g~h~~~p~~~~~~vei 155 (297)
+ .. ++|.+|+++-.... .+..+.... +.+..++..-.... + ....+.... ..+.| .+
T Consensus 249 ~~T~gG~d~~~e~~G~~~~-~~~al~~~~---~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~G-s~------------ 310 (366)
T COG1062 249 ELTDGGADYAFECVGNVEV-MRQALEATH---RGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKG-SA------------ 310 (366)
T ss_pred HhcCCCCCEEEEccCCHHH-HHHHHHHHh---cCCeEEEEecCCCCceeecChHHeecc-ceEEE-Ee------------
Confidence 1 12 79999999875432 333333222 23333322211111 0 000111111 11122 12
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCC
Q 022434 156 IRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVA 211 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~lg~~~i~v~d~~g~i~nri~~~~~~Ea~~l~~~g~~ 211 (297)
.|..-.+..+.++.+++.+ |+-++ ..++..++-..-+|||+..+.+|..
T Consensus 311 -~G~~~p~~diP~lv~~y~~-Gkl~~-----d~lvt~~~~Le~INeaf~~m~~G~~ 359 (366)
T COG1062 311 -FGGARPRSDIPRLVDLYMA-GKLPL-----DRLVTHTIPLEDINEAFDLMHEGKS 359 (366)
T ss_pred -ecCCccccchhHHHHHHHc-CCCch-----hHHhhccccHHHHHHHHHHHhCCce
Confidence 2222233344555555543 44332 1456667778889999999998853
No 289
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.78 E-value=0.0015 Score=59.53 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=34.5
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|+.+...|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 655556799999999999999999999999999998753
No 290
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.76 E-value=0.0023 Score=57.66 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 689999999999999999999997 788999875
No 291
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.76 E-value=0.0019 Score=59.00 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=34.1
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|++ ..+|.|||+|..|..+|..|++.|++|+++|++++
T Consensus 1 ~~~-~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTK-VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCC-CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 553 46899999999999999999999999999998864
No 292
>PLN00016 RNA-binding protein; Provisional
Probab=96.73 E-value=0.0082 Score=54.68 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=32.8
Q ss_pred CcEEEEE----CC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434 5 MKVMGVV----GS-GQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 5 ~~~I~vi----G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
.++|.|+ |+ |.+|..++..|++.||+|++++|+++.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 4689999 76 999999999999999999999998764
No 293
>PRK06153 hypothetical protein; Provisional
Probab=96.71 E-value=0.0059 Score=54.94 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=29.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~ 37 (297)
.+|+|||+|..|+.++..|++.|. +++++|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 589999999999999999999997 89999876
No 294
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.71 E-value=0.018 Score=51.41 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=60.5
Q ss_pred CcEEEEECCChh-HHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 5 MKVMGVVGSGQM-GSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 5 ~~~I~viG~G~m-G~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
..||+|||+|.+ +...+..+.+.+. -|.++|+++++++.+.+. .|.- ...+|++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~~------------~~~~~~~ 60 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGIA------------KAYTDLE 60 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCCC------------cccCCHH
Confidence 469999999855 4567878888763 366889999987766321 1210 2556777
Q ss_pred c-cC--CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHH
Q 022434 81 D-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT 126 (297)
Q Consensus 81 ~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~ 126 (297)
+ ++ +.|+|+.++|.+... ..+...|+. ...|++--.-+.+++
T Consensus 61 ~ll~~~~iD~V~Iatp~~~H~-e~~~~AL~a---GkhVl~EKPla~t~~ 105 (342)
T COG0673 61 ELLADPDIDAVYIATPNALHA-ELALAALEA---GKHVLCEKPLALTLE 105 (342)
T ss_pred HHhcCCCCCEEEEcCCChhhH-HHHHHHHhc---CCEEEEcCCCCCCHH
Confidence 6 44 379999999988863 223333332 345666444444443
No 295
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.69 E-value=0.0027 Score=56.37 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
|+|.|.|+ |.+|+.++..|.+.||+|++.+|++++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 37999997 9999999999999999999999997643
No 296
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.68 E-value=0.037 Score=45.97 Aligned_cols=132 Identities=21% Similarity=0.242 Sum_probs=76.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
-++|.|||.|..|..=+..|++.|-+|+++..+. ...+.. +.+.+.+. .+.-.-+.+.+.+
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~--------~~~~~~i~---------~~~~~~~~~~~~~ 72 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPELKA--------LIEEGKIK---------WIEREFDAEDLDD 72 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHH--------HHHhcCcc---------hhhcccChhhhcC
Confidence 4689999999999999999999999999998765 222221 23333221 1111223344667
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCC--CCceEEEecCCCCc
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGADTS 162 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vei~~~~~~~ 162 (297)
+++||.++.+ .++.+.++....+ ..+++ |... .|.. ..|+.|.. ..++.--+.+.+.+
T Consensus 73 ~~lviaAt~d-~~ln~~i~~~a~~----~~i~v-Nv~D-----------~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATDD-EELNERIAKAARE----RRILV-NVVD-----------DPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCCC-HHHHHHHHHHHHH----hCCce-eccC-----------Cccc---CceecceeeccCCeEEEEECCCCC
Confidence 9999998764 5555556554433 23333 3321 1221 34444542 23344345555567
Q ss_pred HHHHHHHHHHHHH
Q 022434 163 DETFRATKALAER 175 (297)
Q Consensus 163 ~~~~~~~~~ll~~ 175 (297)
|.....+++-.+.
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 7776666655554
No 297
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.68 E-value=0.0073 Score=51.77 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=41.9
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH
Q 022434 4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS 50 (297)
Q Consensus 4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~ 50 (297)
..+++.|-|+ +.+|..+|..|++.|++|+++.|++++++++.+.+++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 3567888899 9999999999999999999999999999988776654
No 298
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.67 E-value=0.0088 Score=50.89 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=30.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDA 40 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~ 40 (297)
.+|.|+|+|.+|+.+|..|+.+|. +++++|.+.-.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 589999999999999999999996 78898877543
No 299
>PRK07045 putative monooxygenase; Reviewed
Probab=96.65 E-value=0.0025 Score=58.20 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
|++...+|.|||+|..|...|..|+++|++|+++|+.++.
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 6655678999999999999999999999999999987653
No 300
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.64 E-value=0.066 Score=47.28 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=29.0
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 58999999999999999999997 799999764
No 301
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.63 E-value=0.0036 Score=56.71 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~ 37 (297)
.+|.|||+|.+|+.++..|+.+|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 589999999999999999999996 89999987
No 302
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.60 E-value=0.0034 Score=53.26 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=30.0
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCC-----------CcEEEEeCCH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDG-----------LDVWLVDTDP 38 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~ 38 (297)
+-.+|.|||+|..|+.++..|++.| .+++++|.|.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3468999999999999999999874 2899999764
No 303
>PRK06847 hypothetical protein; Provisional
Probab=96.60 E-value=0.0029 Score=57.40 Aligned_cols=38 Identities=34% Similarity=0.402 Sum_probs=34.1
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|. +.++|.|||+|.-|...|..|++.|++|++++++++
T Consensus 1 m~-~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MA-AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CC-CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 54 467899999999999999999999999999998754
No 304
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.60 E-value=0.0035 Score=57.09 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~ 37 (297)
.+|.|||+|..|+.++..|+.+|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999998 79999988
No 305
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.58 E-value=0.0041 Score=52.50 Aligned_cols=33 Identities=36% Similarity=0.452 Sum_probs=29.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 788997653
No 306
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.58 E-value=0.015 Score=50.63 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=46.5
Q ss_pred cEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 6 KVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.+|+|||+|.+|..++..+.+ .++++. ++|+++++..... ..+.|.- ...++.+. +
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~---------A~~~Gi~------------~~~~~~e~ll 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR---------ARELGVK------------TSAEGVDGLL 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH---------HHHCCCC------------EEECCHHHHh
Confidence 489999999999988776664 467766 6788887532110 0223321 23345554 3
Q ss_pred --CCCcEEEEeccccHH
Q 022434 83 --HSADIIVEAIVESED 97 (297)
Q Consensus 83 --~~aD~Vi~~v~e~~~ 97 (297)
.+.|+|+.+.|...+
T Consensus 61 ~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 61 ANPDIDIVFDATSAKAH 77 (285)
T ss_pred cCCCCCEEEECCCcHHH
Confidence 368999999998765
No 307
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.58 E-value=0.013 Score=49.06 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=29.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDP 38 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~ 38 (297)
-++|+|.|.|++|..+|..|.+.|.. |.+.|.+.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 46999999999999999999999884 55678876
No 308
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.56 E-value=0.033 Score=51.92 Aligned_cols=39 Identities=28% Similarity=0.202 Sum_probs=34.4
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|.-..++|.|+|+|.+|.++|..|++.|++|+++|++..
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 554567899999999999999999999999999998754
No 309
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.56 E-value=0.0092 Score=53.42 Aligned_cols=143 Identities=22% Similarity=0.224 Sum_probs=75.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC-cc
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDV---WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN-LK 80 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~ 80 (297)
++|+|+|+ |..|..+...|+++||++ ..+.++.+.-+.. ..+. ..+.+.+. ..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l------------~~~g----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL------------SFKG----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee------------eeCC----------ceeEEeeCCHH
Confidence 58999999 999999999999999864 5554443221111 0000 11223221 12
Q ss_pred ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCce--EEEecC
Q 022434 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL--VEVIRG 158 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~--vei~~~ 158 (297)
+++++|+||+|+|.... .++..++ ...+++|+++++....+. . .| .++.-+++..+... -.++..
T Consensus 60 ~~~~vDvVf~A~g~g~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~--~p---~~lpevn~~~i~~~~~~~iVan 126 (334)
T PRK14874 60 DFSGVDIALFSAGGSVS--KKYAPKA---AAAGAVVIDNSSAFRMDP---D--VP---LVVPEVNPEALAEHRKKGIIAN 126 (334)
T ss_pred HHcCCCEEEECCChHHH--HHHHHHH---HhCCCEEEECCchhhcCC---C--CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence 36789999999986543 3344333 234567776776543221 0 11 22222222211111 126666
Q ss_pred CCCcHHH-HHHHHHHHHHcCCeEEEe
Q 022434 159 ADTSDET-FRATKALAERFGKTVVCS 183 (297)
Q Consensus 159 ~~~~~~~-~~~~~~ll~~lg~~~i~v 183 (297)
+++.+.. .-.+.++.+..+-..+.+
T Consensus 127 p~C~~t~~~l~l~pL~~~~~i~~i~v 152 (334)
T PRK14874 127 PNCSTIQMVVALKPLHDAAGIKRVVV 152 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence 6555544 334556666666554443
No 310
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.56 E-value=0.006 Score=55.43 Aligned_cols=98 Identities=12% Similarity=0.179 Sum_probs=57.8
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD 81 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 81 (297)
.+||+|+|+ |..|..+...|..+ +++|+.+.++.++-+.. ......+. .+. ..... .+.++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i----~~~~~~l~-~~~-----------~~~~~~~~~~~ 101 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF----GSVFPHLI-TQD-----------LPNLVAVKDAD 101 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc----hhhCcccc-Ccc-----------ccceecCCHHH
Confidence 468999999 99999999999998 78999987754322111 00000000 000 00011 11223
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
++++|+||.|+|... -.++...+ ..++.|+.+++..-
T Consensus 102 ~~~~DvVf~Alp~~~--s~~i~~~~----~~g~~VIDlSs~fR 138 (381)
T PLN02968 102 FSDVDAVFCCLPHGT--TQEIIKAL----PKDLKIVDLSADFR 138 (381)
T ss_pred hcCCCEEEEcCCHHH--HHHHHHHH----hCCCEEEEcCchhc
Confidence 678999999998753 23444433 34566776776543
No 311
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.56 E-value=0.0034 Score=42.14 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.1
Q ss_pred EECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 10 VVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 10 viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|||+|.-|...|..|++.|++|+++|+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998753
No 312
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.55 E-value=0.0087 Score=50.44 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|+...++|.|.|+ |.+|..++..|++.|++|++++|++++.+..
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 5445578999997 9999999999999999999999998766543
No 313
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.54 E-value=0.014 Score=55.43 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=35.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
++|.|.|+ |.+|..++..|++.|++|++++|+.++++.+.+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 56888988 999999999999999999999999987765533
No 314
>PRK08223 hypothetical protein; Validated
Probab=96.54 E-value=0.0036 Score=54.30 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.++..|+.+|. +++++|.|.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 589999999999999999999997 788998764
No 315
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0081 Score=52.06 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=51.3
Q ss_pred CcEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|+|||.|.. |.++|..|.+.|..|+++.... .++.+ +
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~ 199 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHT 199 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHh
Confidence 478999999777 9999999999999999875432 22332 5
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
+.||+||.+++... ++.. ++++++++++.
T Consensus 200 ~~ADIVV~avG~~~-----~i~~--~~ik~gavVID 228 (285)
T PRK14189 200 RQADIVVAAVGKRN-----VLTA--DMVKPGATVID 228 (285)
T ss_pred hhCCEEEEcCCCcC-----ccCH--HHcCCCCEEEE
Confidence 78999999998543 2221 56778887763
No 316
>PRK11579 putative oxidoreductase; Provisional
Probab=96.54 E-value=0.038 Score=49.69 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=47.3
Q ss_pred CCCCCcEEEEECCChhHHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEec
Q 022434 1 MEEKMKVMGVVGSGQMGSG-IAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTS 77 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (297)
|.. ..||+|||+|.+|.. .+..+.. .+++++ ++|+++++... +.+ ...+.+
T Consensus 1 m~~-~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~ 54 (346)
T PRK11579 1 MSD-KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-------------DWP------------TVTVVS 54 (346)
T ss_pred CCC-cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-------------hCC------------CCceeC
Confidence 543 358999999999984 4555554 467776 78998764321 111 113556
Q ss_pred Cccc-cC--CCcEEEEeccccHH
Q 022434 78 NLKD-LH--SADIIVEAIVESED 97 (297)
Q Consensus 78 ~~~~-~~--~aD~Vi~~v~e~~~ 97 (297)
|+++ ++ +.|+|+.|+|....
T Consensus 55 ~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 55 EPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred CHHHHhcCCCCCEEEEcCCcHHH
Confidence 7776 43 58999999998765
No 317
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.51 E-value=0.0035 Score=57.72 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
++|.|||+|.+|++.|..|++.|++|+++|++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 379999999999999999999999999999975
No 318
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.51 E-value=0.025 Score=44.32 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=27.4
Q ss_pred cEEEEECCChhHHHHHHHHHH-CCCcEEE-EeC-CHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVM-DGLDVWL-VDT-DPDALVR 43 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~-~G~~V~~-~d~-~~~~~~~ 43 (297)
.+|+|+|+|.||+.++..+.. .+.+++. .|+ +++.+..
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ 41 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAH 41 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHH
Confidence 379999999999999998775 4566664 563 5544433
No 319
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.49 E-value=0.0045 Score=57.23 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=33.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 4689999999999999999999999999999887643
No 320
>PRK05868 hypothetical protein; Validated
Probab=96.48 E-value=0.0035 Score=57.03 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=32.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|++|.|||+|..|...|..|+++|++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 35899999999999999999999999999998765
No 321
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.47 E-value=0.013 Score=49.94 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 689999999999999999999996 788998764
No 322
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.45 E-value=0.0086 Score=56.50 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=32.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 68999999999999999999999999999987654
No 323
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.44 E-value=0.015 Score=53.13 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=52.0
Q ss_pred CcEEEEECCChhHHHHHHH--HHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecC
Q 022434 5 MKVMGVVGSGQMGSGIAQL--GVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSN 78 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~--l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
..||+|||+|..+.+--.. +.+ .+.++.++|.++++++.. ....++++++-.. .-++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~--------~~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGA--------PVKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCC--------CeEEEEecC
Confidence 4689999999887664332 222 356899999999988743 3334444443221 134567888
Q ss_pred ccc-cCCCcEEEEec
Q 022434 79 LKD-LHSADIIVEAI 92 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v 92 (297)
.++ +++||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 876 99999999876
No 324
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.43 E-value=0.018 Score=54.19 Aligned_cols=35 Identities=29% Similarity=0.177 Sum_probs=31.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.++|.|||+|..|..+|..|++.|++|+++|.++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999999999999999999999999997653
No 325
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.43 E-value=0.0037 Score=57.16 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
....|.|||+|..|.+.|..|++.|++|+++|+.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 34579999999999999999999999999999865
No 326
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.42 E-value=0.024 Score=47.77 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEE-EEeC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDT 36 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~-~~d~ 36 (297)
-++|+|.|.|.+|..+|..|.+.|.+|+ +.|.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3689999999999999999999999998 6677
No 327
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.41 E-value=0.012 Score=49.96 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=37.6
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|..+.++|.|+|+ |.+|..++..|++.|++|++++|++++.+..
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~ 45 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERV 45 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4444578999998 9999999999999999999999998766554
No 328
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.41 E-value=0.01 Score=47.02 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=46.3
Q ss_pred CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|.|||-+ .+|.+++..|.+.|..|++.+.....+++. ++
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~-------------------------------------~~ 78 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEI-------------------------------------TR 78 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHH-------------------------------------HT
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccce-------------------------------------ee
Confidence 4789999996 589999999999999999987654322221 46
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
.||+||.++...--++. ++++++++++..
T Consensus 79 ~ADIVVsa~G~~~~i~~-------~~ik~gavVIDv 107 (160)
T PF02882_consen 79 RADIVVSAVGKPNLIKA-------DWIKPGAVVIDV 107 (160)
T ss_dssp TSSEEEE-SSSTT-B-G-------GGS-TTEEEEE-
T ss_pred eccEEeeeecccccccc-------ccccCCcEEEec
Confidence 89999999975443322 456788877643
No 329
>PRK07236 hypothetical protein; Provisional
Probab=96.38 E-value=0.0053 Score=56.03 Aligned_cols=35 Identities=26% Similarity=0.144 Sum_probs=32.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998764
No 330
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.38 E-value=0.012 Score=50.95 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=50.2
Q ss_pred CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|.|||-| .+|.++|..|.+.|..|++++.....+.. .++
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~-------------------------------------~~~ 199 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSF-------------------------------------YTQ 199 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHH-------------------------------------HHH
Confidence 4789999998 89999999999999999998643322211 145
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
.||+||.++.-..-+.. ++++++++++
T Consensus 200 ~ADIvV~AvG~p~~i~~-------~~vk~GavVI 226 (285)
T PRK14191 200 NADIVCVGVGKPDLIKA-------SMVKKGAVVV 226 (285)
T ss_pred hCCEEEEecCCCCcCCH-------HHcCCCcEEE
Confidence 79999999965433222 3457777765
No 331
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.36 E-value=0.0042 Score=56.72 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=34.4
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|..+...|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 66666789999999999999999999999999999864
No 332
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.34 E-value=0.011 Score=51.14 Aligned_cols=90 Identities=23% Similarity=0.365 Sum_probs=61.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-e---cCccc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-T---SNLKD 81 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~---~~~~~ 81 (297)
-+|+|||.|..|.--|.....-|.+|++.|+|.+++..+... ...|+.. . .++++
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------------------f~~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------------------FGGRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------------------hCceeEEEEcCHHHHHH
Confidence 479999999999999999999999999999999887665211 1122222 1 22344
Q ss_pred -cCCCcEEEEec--cccHHHHHHHHHHHHhhcCCCeEEE
Q 022434 82 -LHSADIIVEAI--VESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 82 -~~~aD~Vi~~v--~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
++.+|+||-+| |.... -+-+.++.-+.++++++|+
T Consensus 228 ~v~~aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HhhhccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEE
Confidence 88999999877 22211 1234555555667777665
No 333
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.33 E-value=0.014 Score=42.64 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.7
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
+-++|.|||.|.+|..=+..|++.|.+|+++.++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35789999999999999999999999999999886
No 334
>PRK06753 hypothetical protein; Provisional
Probab=96.32 E-value=0.0049 Score=55.85 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|.-|...|..|++.|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4799999999999999999999999999998865
No 335
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.31 E-value=0.022 Score=51.13 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc--c
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK--D 81 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~ 81 (297)
+||+|||+ |.+|..++..|..+ +++++.+-.+.+.-+...+. .+.+. .. ....+ .+.+ .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~----------~~~~~-----~~-~~~~~-~~~~~~~ 65 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDV----------HPHLR-----GL-VDLVL-EPLDPEI 65 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHh----------Ccccc-----cc-cCcee-ecCCHHH
Confidence 69999998 99999999999886 67776543332211111100 00000 00 00011 1222 3
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcH
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
..++|+|+.|+|.... .++..++ ...++.|+++++....
T Consensus 66 ~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 66 LAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRL 104 (343)
T ss_pred hcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCC
Confidence 5679999999998654 2333333 2346777778876654
No 336
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.30 E-value=0.0045 Score=55.16 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=29.1
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
+|.|||+|.-|..+|..|+++|++|+++|+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999998755
No 337
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.27 E-value=0.021 Score=44.25 Aligned_cols=70 Identities=29% Similarity=0.328 Sum_probs=49.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|.|+|- ...|.++|..|.+.|..|++.+.+...++. .++
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~-------------------------------------~v~ 70 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS-------------------------------------KVH 70 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH-------------------------------------HHh
Confidence 468889988 566999999999889999888754321211 256
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.-..-++. ++++++++++.
T Consensus 71 ~ADIVvsAtg~~~~i~~-------~~ikpGa~Vid 98 (140)
T cd05212 71 DADVVVVGSPKPEKVPT-------EWIKPGATVIN 98 (140)
T ss_pred hCCEEEEecCCCCccCH-------HHcCCCCEEEE
Confidence 89999999976533333 45678887763
No 338
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.016 Score=48.67 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=35.2
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|+|+ |.+|..++..|++.|++|++++|++++++..
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 367999987 9999999999999999999999998766554
No 339
>PRK06185 hypothetical protein; Provisional
Probab=96.25 E-value=0.0057 Score=56.15 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
...|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 35799999999999999999999999999998753
No 340
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.018 Score=48.76 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=37.1
Q ss_pred CCCCC--cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKM--KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~--~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|+..+ ++|.|.|+ |.+|..+|..|++.|++|+++++++++++..
T Consensus 1 ~~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 1 MASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL 47 (250)
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 44433 78889987 9999999999999999999999998776654
No 341
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.22 E-value=0.017 Score=54.35 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=32.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
.++|.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 478999999999999999999999999999987653
No 342
>PRK06126 hypothetical protein; Provisional
Probab=96.22 E-value=0.0056 Score=58.58 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=32.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
...+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 345799999999999999999999999999998754
No 343
>PRK07877 hypothetical protein; Provisional
Probab=96.20 E-value=0.018 Score=56.45 Aligned_cols=32 Identities=38% Similarity=0.564 Sum_probs=28.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~--~V~~~d~~~ 38 (297)
.+|+|||+| +|+.+|..|+.+|. +++++|.|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 589999999 89999999999995 899998764
No 344
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.20 E-value=0.009 Score=53.23 Aligned_cols=40 Identities=25% Similarity=0.431 Sum_probs=34.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~ 44 (297)
.++|.|+|+ |.||+.++.+|+.. | .++++++|+++++..+
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 368999999 89999999999864 5 5899999998877655
No 345
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.20 E-value=0.062 Score=47.43 Aligned_cols=144 Identities=19% Similarity=0.250 Sum_probs=77.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE---ecC
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC---TSN 78 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 78 (297)
.+|+|+|+ |.+|.-|...|....+. +.++....+. .+++ .+.+. ..+.. ..+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSa---G~~~--------~~f~~----------~~~~v~~~~~~ 60 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSA---GKKY--------IEFGG----------KSIGVPEDAAD 60 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccccc---CCcc--------ccccC----------ccccCcccccc
Confidence 58999998 99999999999997654 3344322211 1000 01000 00111 133
Q ss_pred ccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCceE---EE
Q 022434 79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV---EV 155 (297)
Q Consensus 79 ~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v---ei 155 (297)
..+.+++|+++.|.+.+.. +++..++ ...++++++|+|..-.+ ++-.+-+.-.||-++.... -|
T Consensus 61 ~~~~~~~Divf~~ag~~~s--~~~~p~~---~~~G~~VIdnsSa~Rm~--------~DVPLVVPeVN~~~l~~~~~rg~I 127 (334)
T COG0136 61 EFVFSDVDIVFFAAGGSVS--KEVEPKA---AEAGCVVIDNSSAFRMD--------PDVPLVVPEVNPEHLIDYQKRGFI 127 (334)
T ss_pred ccccccCCEEEEeCchHHH--HHHHHHH---HHcCCEEEeCCcccccC--------CCCCEecCCcCHHHHHhhhhCCCE
Confidence 4446789999999986654 3444433 34578999999865422 1111222223332211111 24
Q ss_pred ecCCC-CcHHHHHHHHHHHHHcCCeEEEe
Q 022434 156 IRGAD-TSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 156 ~~~~~-~~~~~~~~~~~ll~~lg~~~i~v 183 (297)
+.++. +.....-.+.++++..+-+-+++
T Consensus 128 ianpNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 128 IANPNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred EECCChHHHHHHHHHHHHHhhcCceEEEE
Confidence 44433 34455666777887777655544
No 346
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=96.19 E-value=0.016 Score=50.80 Aligned_cols=101 Identities=27% Similarity=0.266 Sum_probs=65.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++++|+|.|.+|+..|.++...|..|+.||+ .+..... ..|. +..+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~-------------a~gv-------------q~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAE-------------AFGV-------------QLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHH-------------hccc-------------eeeeHHHHHhh
Confidence 6899999999999999999999999999985 4433222 2232 33333334889
Q ss_pred CcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCC---CcHHHHhhhcC
Q 022434 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATS 133 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~ 133 (297)
||+|-.-+|-.++.+.-+-.+.-..++.+.-|+ |++. ++...+.+.+.
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRALD 251 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHHh
Confidence 999998888766644434344444566666444 4442 23345655553
No 347
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.17 E-value=0.01 Score=47.53 Aligned_cols=76 Identities=17% Similarity=0.329 Sum_probs=49.9
Q ss_pred CCcEEEEECCChhHHHHHHH-HH-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE--ecC
Q 022434 4 KMKVMGVVGSGQMGSGIAQL-GV-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC--TSN 78 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~-l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~ 78 (297)
++.+|.|||+|++|.+++.. +. ++|++++ ++|.+++.+-.- .+.+.+ .++
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~-------------------------~~~v~V~~~d~ 137 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK-------------------------IGDVPVYDLDD 137 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc-------------------------cCCeeeechHH
Confidence 45689999999999999985 44 6777755 889999744211 011112 234
Q ss_pred ccc-cC--CCcEEEEeccccHHHHHHHHHHH
Q 022434 79 LKD-LH--SADIIVEAIVESEDVKKKLFSEL 106 (297)
Q Consensus 79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l 106 (297)
++. ++ +.|+.|.|||... -|++...|
T Consensus 138 le~~v~~~dv~iaiLtVPa~~--AQ~vad~L 166 (211)
T COG2344 138 LEKFVKKNDVEIAILTVPAEH--AQEVADRL 166 (211)
T ss_pred HHHHHHhcCccEEEEEccHHH--HHHHHHHH
Confidence 444 44 7899999999654 34554444
No 348
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.17 E-value=0.018 Score=49.95 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=51.0
Q ss_pred CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|.|||-+. +|.++|..|...|..|++++.... ++.+ +
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~ 200 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK--------------------------------------NLRHHV 200 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--------------------------------------CHHHHH
Confidence 47899999988 899999999999999999975422 2222 5
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
+.||+||.++.-..-+.. ++++++++++.
T Consensus 201 ~~ADIvi~avG~p~~v~~-------~~vk~gavVID 229 (285)
T PRK10792 201 RNADLLVVAVGKPGFIPG-------EWIKPGAIVID 229 (285)
T ss_pred hhCCEEEEcCCCcccccH-------HHcCCCcEEEE
Confidence 689999999943322222 56678887763
No 349
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.17 E-value=0.0018 Score=61.78 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=29.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~ 37 (297)
.+|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 589999999999999999999997 68888865
No 350
>PRK07411 hypothetical protein; Validated
Probab=96.14 E-value=0.0095 Score=54.46 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999997 788998764
No 351
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.12 E-value=0.0082 Score=46.18 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=29.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|+|+|.+|+.+|..|+..|. +++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 589999999999999999999998 799999763
No 352
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=96.11 E-value=0.22 Score=41.12 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=67.4
Q ss_pred ecCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhh---hcCCC-CeEEEeecCCCCCCCc
Q 022434 76 TSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLAS---ATSRP-CQVIGMHFMNPPPLMK 151 (297)
Q Consensus 76 ~~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~---~~~~~-~~~~g~h~~~p~~~~~ 151 (297)
++|.++++++|+||..+|-.- ..-.++.++.+.+++++|+. ++.+++.+.+.. ...+. ..+-.-|+-.-|...+
T Consensus 131 tddreavedad~iitwlpkg~-~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~vpemkg 208 (343)
T COG4074 131 TDDREAVEDADMIITWLPKGG-VQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGTVPEMKG 208 (343)
T ss_pred cCcHhhhcCCCeEEEeccCCC-CCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCCCccccC
Confidence 445566999999999998543 23456777777788898886 677888765444 33321 2344455555455555
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 022434 152 LVEVIRGADTSDETFRATKALAERFGKTVV 181 (297)
Q Consensus 152 ~vei~~~~~~~~~~~~~~~~ll~~lg~~~i 181 (297)
.|-+..|. .++++++.+.++-+......+
T Consensus 209 qvyiaegy-aseeavn~lyelg~karg~af 237 (343)
T COG4074 209 QVYIAEGY-ASEEAVNALYELGEKARGLAF 237 (343)
T ss_pred cEEEeccc-ccHHHHHHHHHHHHHhhcccc
Confidence 67677665 688888888887766544343
No 353
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.10 E-value=0.022 Score=48.58 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=37.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS 47 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (297)
.++|.|.|+ |.+|..++..|++.|++|++.+++++..+...+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 367889988 9999999999999999999999999777665443
No 354
>PRK07588 hypothetical protein; Provisional
Probab=96.10 E-value=0.0071 Score=55.26 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|..|.+.|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999998754
No 355
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.08 E-value=0.027 Score=47.42 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=29.8
Q ss_pred EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 8 I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|.|+|+ |.+|++++..|.+.|++|++.-|++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 789998 99999999999999999999999874
No 356
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.08 E-value=0.0088 Score=53.32 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=29.6
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
.|.|||+|..|.++|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 3889999999999999999999999999988
No 357
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.07 E-value=0.023 Score=52.62 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=43.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--------C--Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMD--------G--LD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRL 73 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~--------G--~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 73 (297)
..+|+|+|+|.+|..++..|.++ | ++ +.++|++.++.... + ....
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~------------~------------~~~~ 58 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGV------------D------------LPGI 58 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCC------------C------------Cccc
Confidence 35899999999999999877553 3 34 33668886543211 0 0112
Q ss_pred EEecCccc-cC--CCcEEEEecccc
Q 022434 74 RCTSNLKD-LH--SADIIVEAIVES 95 (297)
Q Consensus 74 ~~~~~~~~-~~--~aD~Vi~~v~e~ 95 (297)
.+++++++ +. +.|+|+++++..
T Consensus 59 ~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 59 LLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred ceeCCHHHHhhCCCCCEEEECCCCc
Confidence 35667766 43 579999998653
No 358
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.07 E-value=0.017 Score=51.57 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=74.2
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEE---EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVW---LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT 76 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 76 (297)
|+ .+.+|+|+|+ |..|.-+...|.+++|++. .+ .+.++..+ . +... . ..+.+.
T Consensus 1 m~-~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~---~--------l~~~--------~--~~l~~~ 57 (336)
T PRK05671 1 MS-QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGH---S--------VPFA--------G--KNLRVR 57 (336)
T ss_pred CC-CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCC---e--------eccC--------C--cceEEe
Confidence 54 3479999999 9999999999998888544 33 22221110 0 0000 0 112232
Q ss_pred c-CccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCCCCCce--E
Q 022434 77 S-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL--V 153 (297)
Q Consensus 77 ~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~--v 153 (297)
. +..+++++|+||.++|.... ..+..++. ..++.++.+++..-.. ..| .++.-+++..+... -
T Consensus 58 ~~~~~~~~~vD~vFla~p~~~s--~~~v~~~~---~~G~~VIDlS~~fR~~------~~p---l~lPEvn~~~i~~~~~~ 123 (336)
T PRK05671 58 EVDSFDFSQVQLAFFAAGAAVS--RSFAEKAR---AAGCSVIDLSGALPSA------QAP---NVVPEVNAERLASLAAP 123 (336)
T ss_pred eCChHHhcCCCEEEEcCCHHHH--HHHHHHHH---HCCCeEEECchhhcCC------CCC---EEecccCHHHHccccCC
Confidence 2 22236789999999996432 33444332 3467777777755432 111 22222332211110 2
Q ss_pred EEecCCCCcHHH-HHHHHHHHHHcCC
Q 022434 154 EVIRGADTSDET-FRATKALAERFGK 178 (297)
Q Consensus 154 ei~~~~~~~~~~-~~~~~~ll~~lg~ 178 (297)
.++..+++.+.. .-.+.++.+.++.
T Consensus 124 ~iIAnPgC~~t~~~laL~PL~~~~~~ 149 (336)
T PRK05671 124 FLVSSPSASAVALAVALAPLKGLLDI 149 (336)
T ss_pred CEEECCCcHHHHHHHHHHHHHHhcCC
Confidence 366666655543 3445666655553
No 359
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.05 E-value=0.026 Score=47.58 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=36.3
Q ss_pred CCCCC--cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKM--KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~--~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
||+.+ ++|.|.|+ |..|..++..|++.|++|++.+|++++.+..
T Consensus 1 ~~~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~ 47 (239)
T PRK07666 1 MAQSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAV 47 (239)
T ss_pred CCccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 54433 57889987 8999999999999999999999998766544
No 360
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.02 Score=53.57 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=31.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.++|.|||.|..|.+.|..|.+.|++|.++|..+.
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~ 43 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPA 43 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChh
Confidence 46899999999999999999999999999997754
No 361
>PRK07538 hypothetical protein; Provisional
Probab=96.04 E-value=0.0077 Score=55.50 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|.-|..+|..|+++|++|+++|+.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999998764
No 362
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.03 E-value=0.07 Score=49.97 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=32.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.++|+|+|.|.-|.++|..|.+.|++|+++|.++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 36899999999999999999999999999998753
No 363
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.03 E-value=0.0095 Score=54.14 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
...+|+|||+|.+|.+.|..|++.|++|+++|..+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 34689999999999999999999999999999775
No 364
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.03 E-value=0.086 Score=49.35 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=75.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cC--ccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SN--LKD 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--~~~ 81 (297)
-++|.|||.|.++..=+..|++.|.+|+++.+.-. +.+ ..+.+.|.+ .+. .. .++
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~--~~~--------~~l~~~~~i------------~~~~~~~~~~d 69 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLTVNALAFI--PQF--------TAWADAGML------------TLVEGPFDESL 69 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC--HHH--------HHHHhCCCE------------EEEeCCCChHH
Confidence 47899999999999999999999999999965421 111 112334432 222 22 234
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCcHHHHhhhcCCCCeEEEeecCCCC--CCCceEEEecCC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP--PLMKLVEVIRGA 159 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~--~~~~~vei~~~~ 159 (297)
++++++||.|+. |.++.+.+ ...++...+++ |...- |.. .+|+.|. ...+++--+.+.
T Consensus 70 l~~~~lv~~at~-d~~~n~~i----~~~a~~~~~lv-N~~d~-----------~~~---~~f~~pa~~~~g~l~iaisT~ 129 (457)
T PRK10637 70 LDTCWLAIAATD-DDAVNQRV----SEAAEARRIFC-NVVDA-----------PKA---ASFIMPSIIDRSPLMVAVSSG 129 (457)
T ss_pred hCCCEEEEECCC-CHHHhHHH----HHHHHHcCcEE-EECCC-----------ccc---CeEEEeeEEecCCEEEEEECC
Confidence 889999888865 44444444 34444444444 33221 111 2344444 223344445666
Q ss_pred CCcHHHHHHHHHHHHHc
Q 022434 160 DTSDETFRATKALAERF 176 (297)
Q Consensus 160 ~~~~~~~~~~~~ll~~l 176 (297)
+.+|.....+++-++.+
T Consensus 130 G~sP~~a~~lr~~ie~~ 146 (457)
T PRK10637 130 GTSPVLARLLREKLESL 146 (457)
T ss_pred CCCcHHHHHHHHHHHHh
Confidence 67887777766665543
No 365
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.03 E-value=0.0077 Score=54.59 Aligned_cols=32 Identities=31% Similarity=0.265 Sum_probs=30.1
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.|.|||+|.+|+++|..|++.|++|+++|+..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 59999999999999999999999999999864
No 366
>PRK08013 oxidoreductase; Provisional
Probab=96.02 E-value=0.0074 Score=55.38 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999998765
No 367
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.027 Score=47.51 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=35.5
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++++.|.|+ |.+|..++..|++.|++|++.+|++++.+..
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4567888887 9999999999999999999999998765544
No 368
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.01 E-value=0.0086 Score=54.71 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=31.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
...|.|||+|..|..+|..|+++|++|+++|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 357999999999999999999999999999998
No 369
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.01 E-value=0.23 Score=36.27 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=61.2
Q ss_pred cEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE-ecCc---
Q 022434 6 KVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC-TSNL--- 79 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--- 79 (297)
.+|.-||+|.= .++..+++ .|.+|+.+|.+++.++.+++... +.+ ...++++ ..|.
T Consensus 3 ~~vLDlGcG~G--~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~---------~~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGTG--RLSIALARLFPGARVVGVDISPEMLEIARERAA-------EEG---------LSDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTTS--HHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTT---------TTTTEEEEESCCHGG
T ss_pred CEEEEEcCcCC--HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcC---------CCCCeEEEECccccC
Confidence 57889999873 23333444 89999999999999888865541 111 1234443 2344
Q ss_pred -cccCCCcEEEEec-----cccHHHHHHHHHHHHhhcCCCeEEEec
Q 022434 80 -KDLHSADIIVEAI-----VESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 80 -~~~~~aD~Vi~~v-----~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
+.....|+|+... -...+..+.+++.+.+.++++.+++.+
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1245689999876 112234667888888888887766533
No 370
>PLN03075 nicotianamine synthase; Provisional
Probab=95.98 E-value=0.043 Score=47.92 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=66.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCc--
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNL-- 79 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 79 (297)
.++|..||.|..|..-...++.+ +-.++.+|.+++..+.+++.+.+ +.| ...++++. .|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g---------L~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD---------LSKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC---------ccCCcEEEECchhh
Confidence 47899999999877655444443 34699999999998887654321 011 11233442 221
Q ss_pred --cccCCCcEEEEeccc--cHHHHHHHHHHHHhhcCCCeEEEecC
Q 022434 80 --KDLHSADIIVEAIVE--SEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 80 --~~~~~aD~Vi~~v~e--~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
....+.|+|+..+-- +..-|+.++..+.+.++++.+++.-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 124678999988521 12347899999999999988777554
No 371
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.97 E-value=0.008 Score=55.16 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|.-|...|..|++.|++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998764
No 372
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.16 Score=45.43 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=36.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
.++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAE 49 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 357888888 899999999999999999999999988766533
No 373
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.97 E-value=0.032 Score=50.21 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=56.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD 81 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 81 (297)
+||+|||+ |.+|..++..|.++ ++++. +++.+.+.-+.. ... .+.+.. . ..+.+. .+.++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~----~~~------~~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV----SEV------HPHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh----HHh------Cccccc-----c-CCceeecCCHHH
Confidence 48999999 99999999999987 67877 556554211111 000 010000 0 011122 13333
Q ss_pred -cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
.+++|+||.|+|.... .++..++. ..++.|+.+++..-
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR 103 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFR 103 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhh
Confidence 3589999999997653 33433332 34576777776554
No 374
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.97 E-value=0.013 Score=53.59 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 589999999999999999999997 789999764
No 375
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.96 E-value=0.036 Score=51.21 Aligned_cols=31 Identities=26% Similarity=0.141 Sum_probs=28.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEE-e
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLV-D 35 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~-d 35 (297)
-++|+|.|.|++|...|..|...|..|+.+ |
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 468999999999999999999999999977 8
No 376
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.96 E-value=0.0093 Score=54.81 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
||. ...|.|||+|..|...|..|++.|++|+++|+.
T Consensus 1 ~m~-~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQ-SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCC-cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 554 357999999999999999999999999999985
No 377
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.03 Score=47.74 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=35.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
.+++.|.|+ |.+|..+|..|++.|++|++.++++++++...
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 357888887 89999999999999999999999988766553
No 378
>PRK07190 hypothetical protein; Provisional
Probab=95.94 E-value=0.011 Score=55.84 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=35.5
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
|.+....|.|||+|..|..+|..|+++|++|.++|+.++.
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 6656678999999999999999999999999999988653
No 379
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.94 E-value=0.43 Score=41.37 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=34.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~ 44 (297)
.+|.|+|+|.+|...++.+...|.+ |++.++++++++.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 5799999999999999988889987 88889998877655
No 380
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.92 E-value=0.011 Score=54.93 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=33.8
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|.++.-.|.|||+|.-|+..|..|+++|++|.++|+.+
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 65455679999999999999999999999999999864
No 381
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.92 E-value=0.011 Score=54.32 Aligned_cols=34 Identities=35% Similarity=0.438 Sum_probs=30.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
+++|.|||+|..|+..|..|++.|++|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 3579999999999999999999999999999543
No 382
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.029 Score=48.14 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=37.4
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|..+.++|.|.|+ |.+|..++..|++.|++|++.+|+++.++..
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 45 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEAL 45 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 5444578999986 9999999999999999999999998776554
No 383
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.91 E-value=0.032 Score=48.22 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=51.6
Q ss_pred CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|.|||-+ ..|.++|..|...|..|++...+...++.. ++
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~-------------------------------------~~ 194 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAE-------------------------------------LR 194 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHH-------------------------------------Hh
Confidence 3789999998 889999999999999999998765433221 45
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
+||+||.+++-..-++. .+++++++++.
T Consensus 195 ~ADIvI~Avgk~~lv~~-------~~vk~GavVID 222 (279)
T PRK14178 195 QADILVSAAGKAGFITP-------DMVKPGATVID 222 (279)
T ss_pred hCCEEEECCCcccccCH-------HHcCCCcEEEE
Confidence 79999999974322222 23577877663
No 384
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.91 E-value=0.0089 Score=55.00 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.+|.|||+|.-|..+|..|++.|++|+++|+.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 4799999999999999999999999999998764
No 385
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.022 Score=49.44 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=29.6
Q ss_pred CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCC
Q 022434 5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
-++|.|||-+. +|.++|..|...|..|++++..
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~ 197 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF 197 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc
Confidence 47899999987 8999999999999999999843
No 386
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.032 Score=47.46 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=35.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++..
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 47 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEET 47 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 368999988 8999999999999999999999998876554
No 387
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.88 E-value=0.029 Score=52.57 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=32.0
Q ss_pred CcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022434 5 MKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~G~mG~~-iA~~l~~~G~~V~~~d~~~~ 39 (297)
.++|.|||+|..|.+ +|..|.+.|++|+++|.++.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 468999999999999 79999999999999998754
No 388
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.88 E-value=0.011 Score=53.89 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.+|.|||+|..|.+.|..|++.|++|+++|+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 479999999999999999999999999999764
No 389
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.86 E-value=0.034 Score=47.42 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=35.3
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
-++|.|.|+ |.+|..+|..|++.|++|++.++++++.+..
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAA 50 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 368999987 9999999999999999999999998766554
No 390
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.13 Score=42.99 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=34.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR 43 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 43 (297)
.++|.|.|+ |.+|..++..|++.|++|++++|++++...
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 468999987 999999999999999999999999876544
No 391
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.85 E-value=0.01 Score=55.05 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..++|+|||||.-|..-|..|.+.|++|++++++..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 357899999999999999999999999999998753
No 392
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.85 E-value=0.012 Score=53.78 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=31.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999999999998774
No 393
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.83 E-value=0.01 Score=53.81 Aligned_cols=31 Identities=29% Similarity=0.219 Sum_probs=29.3
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
.|.|||+|.+|.+.|..|++.|++|+++|+.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4899999999999999999999999999985
No 394
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.83 E-value=0.035 Score=46.73 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=37.9
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
|..+-+++.|.|+ +.+|.++|..|++.|++|++.+|++++++...+
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYE 47 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5444567888888 669999999999999999999999987766543
No 395
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.83 E-value=0.036 Score=46.91 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=37.5
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
|..+-+++.|+|+ |.+|..++..|++.|++|++.++++++++...
T Consensus 1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~ 46 (253)
T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAV 46 (253)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4334468899998 99999999999999999999999987765543
No 396
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.83 E-value=0.011 Score=54.49 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=30.6
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
+|.|||+|..|+..|..|++.|++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999997554
No 397
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.82 E-value=0.028 Score=48.22 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=36.3
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|..+.+++.|.|+ |.+|..+|..|++.|++|++.+++.+.++..
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQEL 45 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 5334567888887 8899999999999999999999998765543
No 398
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.80 E-value=0.029 Score=48.06 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=35.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS 47 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (297)
|+|.|.|+ |.+|.++|..|++.|++|++.+|+++.++...+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 43 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE 43 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 37889987 8899999999999999999999998877655433
No 399
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.77 E-value=0.015 Score=54.30 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=32.3
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
....|.|||+|.-|+..|..|+++|++|.++|+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 345799999999999999999999999999998743
No 400
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.033 Score=47.08 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=34.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL 41 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 57889986 9999999999999999999999998876554
No 401
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.041 Score=46.65 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=35.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|++.+|+++..+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467889998 9999999999999999999999998765544
No 402
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.036 Score=47.82 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=37.4
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|..+.++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET 45 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4334568889988 9999999999999999999999999877654
No 403
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.73 E-value=0.042 Score=46.79 Aligned_cols=40 Identities=28% Similarity=0.215 Sum_probs=35.2
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~ 51 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAA 51 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 478889987 9999999999999999999999998766554
No 404
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.041 Score=46.87 Aligned_cols=41 Identities=29% Similarity=0.300 Sum_probs=35.6
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 4 ~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
..++|.|.|+ |.+|..+|..|++.|++|++.+|+++..+..
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 45 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEV 45 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 3467889987 8999999999999999999999998766554
No 405
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.73 E-value=0.012 Score=57.84 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
..|.|||+|.+|+++|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 379999999999999999999999999999863
No 406
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.73 E-value=0.011 Score=53.68 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=30.5
Q ss_pred EEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 8 I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 88999999999999999999999999999864
No 407
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.041 Score=48.21 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=35.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 67888887 999999999999999999999999887765533
No 408
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.72 E-value=0.04 Score=46.46 Aligned_cols=44 Identities=32% Similarity=0.391 Sum_probs=36.9
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLV-DTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~ 44 (297)
|.-+.++|.|+|+ |.+|..++..|++.|++|++. ++++++.+..
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~ 46 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQEL 46 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 4444568999987 999999999999999999998 9998766544
No 409
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.71 E-value=0.02 Score=50.67 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
++|.|.|+ |.+|+.++..|++.|++|++++++++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 37899987 999999999999999999999998764
No 410
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.70 E-value=0.036 Score=47.29 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=35.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..+|..|++.|++|++.+++.+..+..
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA 46 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 467888887 9999999999999999999999998876654
No 411
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.68 E-value=0.11 Score=44.30 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=27.9
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCC-CcEE-EEeCCHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDG-LDVW-LVDTDPD 39 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G-~~V~-~~d~~~~ 39 (297)
++||+|.|+ |.||+.+...+.+.. +++. .+|+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 468999999 999999999988775 4543 6677754
No 412
>PRK09126 hypothetical protein; Provisional
Probab=95.68 E-value=0.014 Score=53.23 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4799999999999999999999999999998754
No 413
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.67 E-value=0.014 Score=53.88 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 39 (297)
++|.|||+|.-|..+|..|+++|+ +|++++++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 479999999999999999999984 9999998765
No 414
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.67 E-value=0.014 Score=53.07 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
..|.|||+|..|.++|..|++.|++|+++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 46999999999999999999999999999975
No 415
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.65 E-value=0.011 Score=54.24 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=30.4
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.|.|||+|..|.++|..|+++|++|+++|+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999875
No 416
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.64 E-value=0.015 Score=53.10 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHC---CCcEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMD---GLDVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~---G~~V~~~d~~ 37 (297)
..|.|||+|..|..+|..|++. |++|+++|+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 5799999999999999999998 9999999994
No 417
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.64 E-value=0.016 Score=52.41 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.7
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.|.|||+|.+|.+.|..|++.|++|+++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48999999999999999999999999999763
No 418
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.64 E-value=0.012 Score=53.55 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=30.1
Q ss_pred EEEECCChhHHHHHHHHHHCC-CcEEEEeCCHH
Q 022434 8 MGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPD 39 (297)
Q Consensus 8 I~viG~G~mG~~iA~~l~~~G-~~V~~~d~~~~ 39 (297)
|.|||+|..|...|..|+++| ++|+++|+.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 789999999999999999999 99999998754
No 419
>PLN02985 squalene monooxygenase
Probab=95.63 E-value=0.017 Score=54.76 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=31.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
...|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3579999999999999999999999999999874
No 420
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.63 E-value=0.047 Score=48.54 Aligned_cols=85 Identities=22% Similarity=0.345 Sum_probs=48.6
Q ss_pred EEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cCC
Q 022434 8 MGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 8 I~viG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
|+|+|.|.+|+..+..+.+ .+.+|+ +.|.+++..+.+..... ++.+. ........-....+....++++ +.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lg--yds~~---~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELG--IPVYA---ASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhC--CCEEe---ecCCcceEeccCceEecCCHHHHhhc
Confidence 6899999999999998765 456766 45777765443321100 00000 0000000011123445556666 678
Q ss_pred CcEEEEeccccHH
Q 022434 85 ADIIVEAIVESED 97 (297)
Q Consensus 85 aD~Vi~~v~e~~~ 97 (297)
+|+|++|.|....
T Consensus 76 vDiVve~Tp~~~~ 88 (333)
T TIGR01546 76 VDIVVDATPGGIG 88 (333)
T ss_pred CCEEEECCCCCCC
Confidence 9999999987654
No 421
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.62 E-value=0.022 Score=48.94 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=49.7
Q ss_pred CcEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-+++.|||.+. +|.+|+..|..+++.|++..... .++.+ +
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------------------------------~~l~~~~ 197 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------------------------------KDLASIT 197 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------------------------------CCHHHHh
Confidence 36899999955 59999999999999999987443 22233 5
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEE
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+.||++|.++--..-++ .++++++++++
T Consensus 198 k~ADIvv~AvG~p~~i~-------~d~vk~gavVI 225 (283)
T COG0190 198 KNADIVVVAVGKPHFIK-------ADMVKPGAVVI 225 (283)
T ss_pred hhCCEEEEecCCccccc-------cccccCCCEEE
Confidence 68999999986433333 34567777665
No 422
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.62 E-value=0.039 Score=49.07 Aligned_cols=43 Identities=33% Similarity=0.425 Sum_probs=36.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 48 (297)
+.+.|.|+ |.+|..+|..|++.|++|++++|++++++...+.+
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l 97 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI 97 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence 56777887 88999999999999999999999998877664443
No 423
>PRK08703 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.05 Score=45.86 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=34.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++++|+++.++..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKV 46 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence 67889987 9999999999999999999999998766554
No 424
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.045 Score=46.41 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=36.7
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|.-+.++|.|.|+ |.+|..++..|++.|++|++++|+.+..+..
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERV 45 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence 5434568999988 9999999999999999999999998765543
No 425
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.59 E-value=0.61 Score=41.82 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=35.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
-.+|.|+|+|.+|...++.+...|.+|+++++++++++.+
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM 206 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 4689999999999999999999999999999999887665
No 426
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.59 E-value=0.013 Score=55.74 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
+||+|||+|.-|...+..|.+.|++|++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 6899999999999999999999999999998753
No 427
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.59 E-value=0.049 Score=46.32 Aligned_cols=40 Identities=30% Similarity=0.298 Sum_probs=35.6
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|++++|++++.+..
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~ 44 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA 44 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 368999986 9999999999999999999999998876654
No 428
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.58 E-value=0.052 Score=48.71 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred CCCcEEEEECC-ChhHHHHHHHHHHCCCc---EEEEe--CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe
Q 022434 3 EKMKVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVD--TDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT 76 (297)
Q Consensus 3 ~~~~~I~viG~-G~mG~~iA~~l~~~G~~---V~~~d--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 76 (297)
+...+|+|||+ |..|..+...|...+|+ +..+. ++..+.-. ..| ..+.+.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~-------------~~~-----------~~~~v~ 60 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT-------------FEG-----------RDYTVE 60 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee-------------ecC-----------ceeEEE
Confidence 34579999999 99999999999998885 33332 22211000 001 112222
Q ss_pred c-CccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 77 S-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 77 ~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
. +.++++++|+||.|+|.... .++..++ ...++.|+.+++..-
T Consensus 61 ~~~~~~~~~~D~vf~a~p~~~s--~~~~~~~---~~~g~~VIDlS~~fR 104 (344)
T PLN02383 61 ELTEDSFDGVDIALFSAGGSIS--KKFGPIA---VDKGAVVVDNSSAFR 104 (344)
T ss_pred eCCHHHHcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCchhh
Confidence 2 22347789999999997653 2333333 235677777777543
No 429
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.58 E-value=0.047 Score=46.15 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=34.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|++.+|+++++...
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 367999986 9999999999999999999999998765544
No 430
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.58 E-value=0.014 Score=53.39 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~--G~~V~~~d~~~ 38 (297)
..|.|||+|.+|.++|..|++. |++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3699999999999999999998 99999999864
No 431
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.58 E-value=0.047 Score=47.24 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=34.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|.|+ |.+|..++..|++.|++|++++++++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV 50 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56788887 8999999999999999999999998766544
No 432
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.58 E-value=0.036 Score=47.97 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=35.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 467889987 9999999999999999999999998766543
No 433
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.56 E-value=0.025 Score=48.89 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=49.8
Q ss_pred CcEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 5 MKVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~I~viG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|.|||-+ .+|.++|..|.+.|..|++..... .++.+ +
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------------------------------~~l~~~~ 198 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------------------------------KDLKAHT 198 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------------------------------cCHHHHH
Confidence 4689999997 889999999999999999875322 22222 5
Q ss_pred CCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
+.||+||.++.-..-++ .++++++++++.
T Consensus 199 ~~ADIvV~AvGkp~~i~-------~~~vk~gavvID 227 (281)
T PRK14183 199 KKADIVIVGVGKPNLIT-------EDMVKEGAIVID 227 (281)
T ss_pred hhCCEEEEecCcccccC-------HHHcCCCcEEEE
Confidence 68999999996433222 245677877663
No 434
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.54 E-value=0.043 Score=43.95 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=34.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.+|.|+|+|..|.+-+..+...|++|+.+|.++++++..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~ 59 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL 59 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence 589999999999999999999999999999998877654
No 435
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.54 E-value=0.04 Score=47.74 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=35.2
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l 44 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL 44 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 357889998 9999999999999999999999998876544
No 436
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.53 E-value=0.017 Score=54.12 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.++|+|||+|.-|...|..|.+.|++|++++++.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4789999999999999999999999999999764
No 437
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.53 E-value=0.16 Score=45.47 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=34.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
-.+|.|+|+|.+|...++.+...|. +|++.++++++++.+
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a 210 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA 210 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH
Confidence 3689999999999999988888898 588999999888766
No 438
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.04 Score=47.11 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=34.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|+|+ |.+|..++..|++.|++|++++++++.++.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 57889987 9999999999999999999999998876655
No 439
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.053 Score=46.60 Aligned_cols=39 Identities=28% Similarity=0.289 Sum_probs=34.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|+..|++|++.+|+++.++..
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 67889988 8999999999999999999999998766544
No 440
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.53 E-value=0.047 Score=46.79 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=34.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.+++.|.|+ |.+|..+|..|++.|++|++.++++++++..
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASL 46 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467888887 8899999999999999999999998776554
No 441
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.53 E-value=0.6 Score=42.24 Aligned_cols=170 Identities=12% Similarity=0.176 Sum_probs=94.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----hhhhcccCCCcEE---e
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLS----QAVGTDAPRRLRC---T 76 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~i~~---~ 76 (297)
|.+|-|+|+|..+-.+|..|.+.+. .|-++.|.-.+.+++.+.+.+. .+.+. .++.....+...+ .
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~------~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARS------DGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhC------CCEEEEeecchhhhhhcCeEEhhHhh
Confidence 3589999999999999999998875 6999999766666554433221 11110 0111111122222 2
Q ss_pred cCccc-cCCCcEEEEeccccHHHHHHHHHHHHhh--cCCCeEEEecCCCCc----HHHHhhhcCCCCeEEEee-------
Q 022434 77 SNLKD-LHSADIIVEAIVESEDVKKKLFSELDKI--TKASAILASNTSSIS----ITRLASATSRPCQVIGMH------- 142 (297)
Q Consensus 77 ~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~----~~~l~~~~~~~~~~~g~h------- 142 (297)
.++++ ..+=|.+|.|+|.|. -..++++|... ..-.++|. -++++. ++.+.........++...
T Consensus 75 ~~~~~i~g~WdtlILavtaDA--Y~~VL~ql~~~~L~~vk~iVL-vSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr 151 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADA--YLDVLQQLPWEVLKRVKSIVL-VSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTR 151 (429)
T ss_pred cCHHHhcccccEEEEEechHH--HHHHHHhcCHHHHhhCCEEEE-ECcccchHHHHHHHHHhcCCCceEEEeecccccce
Confidence 44455 345799999999876 44677765432 22344544 233333 333333333222344332
Q ss_pred cCCC--C-CCC-----ceEEEecCCCCcHHHHHHHHHHHHHcCCeEEEec
Q 022434 143 FMNP--P-PLM-----KLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 143 ~~~p--~-~~~-----~~vei~~~~~~~~~~~~~~~~ll~~lg~~~i~v~ 184 (297)
|.++ | ++. +-+=+-. ...+...++++..+++.+|-....+.
T Consensus 152 ~~d~~~~~~vlt~~vK~kiYigS-t~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 152 WSDGEQPNRVLTTAVKKKIYIGS-THSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred eccCCCcceehhhhhhceEEEEe-CCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 2221 2 110 1122222 34556678888999999999888764
No 442
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.53 E-value=0.05 Score=46.11 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=34.8
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|+++++++++++..
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~ 52 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAV 52 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence 467888877 9999999999999999999999998776554
No 443
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.52 E-value=0.057 Score=45.37 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=36.8
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|.-..++|.|.|+ |.+|..++..|++.|++|++.+|+++..+.+
T Consensus 1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4333468999988 8899999999999999999999998766544
No 444
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.51 E-value=0.027 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.9
Q ss_pred cEEEEECCChhHHHHHHHHHHC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMD 27 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~ 27 (297)
.+|+|+|+|.||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999998765
No 445
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.053 Score=46.35 Aligned_cols=41 Identities=34% Similarity=0.359 Sum_probs=35.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~ 49 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAA 49 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56778887 899999999999999999999999887665543
No 446
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.51 E-value=0.035 Score=46.48 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=32.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVR 43 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~ 43 (297)
.+|+|+|.|.+|+..+..|++.|. +++++|.+.=.+..
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN 69 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTN 69 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccc
Confidence 589999999999999999999997 78888876544433
No 447
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.017 Score=53.51 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=30.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|||+|+|+|.-|.+-|..|+++||+|++|+...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 589999999999999999999999999998764
No 448
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.50 E-value=0.054 Score=46.14 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=34.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
+++.|.|+ |.+|..+|..|++.|++|++.++++++++...
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~ 50 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAV 50 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 56888887 89999999999999999999999987766553
No 449
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.49 E-value=0.025 Score=49.18 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=31.7
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434 7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
+|.|+|+ |.+|+.++..|.+.|++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 4789998 9999999999999999999999998743
No 450
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.49 E-value=0.12 Score=46.40 Aligned_cols=97 Identities=23% Similarity=0.292 Sum_probs=58.8
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHH-CCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVM-DGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC 75 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~-~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 75 (297)
|.....+|+|||+ |..|.-+...|.. ..++ +.++....+ .|..-. . ....+.+
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~s------------------aGk~~~--~--~~~~l~v 58 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRS------------------AGKTVQ--F--KGREIII 58 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECccc------------------CCCCee--e--CCcceEE
Confidence 6555679999999 9999999999995 6777 555543321 011000 0 0011222
Q ss_pred e-cCccccCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Q 022434 76 T-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 76 ~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
. .+.++++++|++|.|+|.... .++..++ ...+++++.+++..-
T Consensus 59 ~~~~~~~~~~~Divf~a~~~~~s--~~~~~~~---~~~G~~VID~Ss~fR 103 (347)
T PRK06728 59 QEAKINSFEGVDIAFFSAGGEVS--RQFVNQA---VSSGAIVIDNTSEYR 103 (347)
T ss_pred EeCCHHHhcCCCEEEECCChHHH--HHHHHHH---HHCCCEEEECchhhc
Confidence 2 233447889999999987643 3333332 235678887887543
No 451
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.33 Score=43.37 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=35.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
++|.|.|+ |.+|..+|..|++.|++|++.+|++++++...
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 99999999999999999999999988766553
No 452
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.47 E-value=0.26 Score=44.34 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=33.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeC---CHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT---DPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~---~~~~~~~~ 44 (297)
-.+|.|+|+|.+|...++.+...|.+|+++++ ++++.+.+
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~ 215 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV 215 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 46899999999999999988889999999998 56665544
No 453
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.45 E-value=0.12 Score=45.66 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~ 44 (297)
.+|.|+|+|.+|...++.+...|.+ |.++|+++++++.+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 5799999999999888888888987 55678888766543
No 454
>PRK14852 hypothetical protein; Provisional
Probab=95.44 E-value=0.065 Score=53.90 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=29.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|+|||+|.+|+.+|..|+..|. +++++|.|.
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 689999999999999999999997 688888664
No 455
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.44 E-value=0.036 Score=52.80 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=35.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|+|+|.+|++++..|++.|.+|++++|+.++.+.+
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~l 418 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKEL 418 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 578999999999999999999999999999998877655
No 456
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.43 E-value=0.019 Score=55.86 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=32.3
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 4 ~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
+..+|.|||+|..|..+|..|++.|++|++|++++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34689999999999999999999999999999875
No 457
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.43 E-value=0.068 Score=39.89 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=34.7
Q ss_pred CCChhHHHHHHHHHHC----CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-cC--
Q 022434 12 GSGQMGSGIAQLGVMD----GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-LH-- 83 (297)
Q Consensus 12 G~G~mG~~iA~~l~~~----G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-- 83 (297)
|+|.||+.++..|.+. +++|. +++++ ........ ... .....++++++ +.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~~ 58 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWA-------ASF--------------PDEAFTTDLEELIDDP 58 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHH-------HHH--------------THSCEESSHHHHHTHT
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhh-------hhc--------------ccccccCCHHHHhcCc
Confidence 8999999999999887 56655 56877 11110000 000 11135677766 55
Q ss_pred CCcEEEEeccc
Q 022434 84 SADIIVEAIVE 94 (297)
Q Consensus 84 ~aD~Vi~~v~e 94 (297)
+.|+||||.+.
T Consensus 59 ~~dvvVE~t~~ 69 (117)
T PF03447_consen 59 DIDVVVECTSS 69 (117)
T ss_dssp T-SEEEE-SSC
T ss_pred CCCEEEECCCc
Confidence 79999999554
No 458
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.058 Score=45.91 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=35.3
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
-+++.|.|+ |.+|..+|..|++.|++|++.++++++++...
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 357888888 89999999999999999999999987766553
No 459
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.42 E-value=0.046 Score=46.43 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|+|.|+|+ |..|..+|..|++.|++|++.+|++++++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 36889987 9999999999999999999999998776554
No 460
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.41 E-value=0.25 Score=43.04 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|+|+|.+|+.+|..|+.+|. +++++|.+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 589999999999999999999997 699999764
No 461
>PRK08278 short chain dehydrogenase; Provisional
Probab=95.41 E-value=0.22 Score=43.06 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
.+++.|.|+ |.+|..+|..|++.|++|++++|+.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~ 42 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEP 42 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccccc
Confidence 467888887 899999999999999999999998653
No 462
>PRK09186 flagellin modification protein A; Provisional
Probab=95.41 E-value=0.057 Score=45.90 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=36.3
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
.++|.|.|+ |.+|..+|..|++.|++|++.++++++++...+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLE 46 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHH
Confidence 468889987 899999999999999999999999887765533
No 463
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.40 E-value=0.02 Score=52.30 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=31.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5799999999999999999999999999998864
No 464
>PRK14851 hypothetical protein; Provisional
Probab=95.38 E-value=0.057 Score=52.80 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=29.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|+|||+|.+|+.++..|+..|. +++++|.|.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 689999999999999999999997 688888653
No 465
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.37 E-value=0.028 Score=50.40 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=53.2
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCCcEE---EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe-cCccc
Q 022434 7 VMGVVGS-GQMGSGIAQLGVMDGLDVW---LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT-SNLKD 81 (297)
Q Consensus 7 ~I~viG~-G~mG~~iA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 81 (297)
+|+|||+ |..|..+...|.++||++. ++.++.+.-+.. .-.| ..+.+. .+.++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~-----------~~~~-----------~~~~~~~~~~~~ 58 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKV-----------TFKG-----------KELEVNEAKIES 58 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCee-----------eeCC-----------eeEEEEeCChHH
Confidence 5899997 9999999999999998754 443443211111 0001 011221 12234
Q ss_pred cCCCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEecCCCC
Q 022434 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
++++|+||+|.+.... .++..++ ...+++|+++++.+
T Consensus 59 ~~~~D~v~~a~g~~~s--~~~a~~~---~~~G~~VID~ss~~ 95 (339)
T TIGR01296 59 FEGIDIALFSAGGSVS--KEFAPKA---AKCGAIVIDNTSAF 95 (339)
T ss_pred hcCCCEEEECCCHHHH--HHHHHHH---HHCCCEEEECCHHH
Confidence 7889999999986543 2333333 33456777676643
No 466
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.37 E-value=0.078 Score=42.01 Aligned_cols=78 Identities=14% Similarity=0.260 Sum_probs=50.9
Q ss_pred cEEEEECC--ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc-c
Q 022434 6 KVMGVVGS--GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 6 ~~I~viG~--G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.+|++||- +++..+++..+++-|.+|+++.+..-....-.+.+....+...+.| ..+.+++++++ +
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g-----------~~i~~~~~~~e~l 71 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG-----------GKITITDDIEEAL 71 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT-----------TEEEEESSHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC-----------CCeEEEeCHHHhc
Confidence 58999994 7999999999999999999988765221111111111112222223 34567888865 9
Q ss_pred CCCcEEEEeccc
Q 022434 83 HSADIIVEAIVE 94 (297)
Q Consensus 83 ~~aD~Vi~~v~e 94 (297)
+++|+|+...--
T Consensus 72 ~~aDvvy~~~~~ 83 (158)
T PF00185_consen 72 KGADVVYTDRWQ 83 (158)
T ss_dssp TT-SEEEEESSS
T ss_pred CCCCEEEEcCcc
Confidence 999999976643
No 467
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.35 E-value=0.022 Score=52.33 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=28.5
Q ss_pred EEEEECCChhHHHHHHHHHHC-CC-cEEEEeCC
Q 022434 7 VMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTD 37 (297)
Q Consensus 7 ~I~viG~G~mG~~iA~~l~~~-G~-~V~~~d~~ 37 (297)
.|.|||+|.+|+++|..|++. |. +|+++|++
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 699999999999999999985 95 89999986
No 468
>PRK08264 short chain dehydrogenase; Validated
Probab=95.35 E-value=0.041 Score=46.31 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=33.5
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCCC-cEEEEeCCHHHH
Q 022434 4 KMKVMGVVGS-GQMGSGIAQLGVMDGL-DVWLVDTDPDAL 41 (297)
Q Consensus 4 ~~~~I~viG~-G~mG~~iA~~l~~~G~-~V~~~d~~~~~~ 41 (297)
..++|.|+|+ |.+|..+|..|++.|+ +|+++++++++.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~ 44 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESV 44 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhh
Confidence 4468999986 9999999999999999 999999997654
No 469
>PRK08017 oxidoreductase; Provisional
Probab=95.34 E-value=0.043 Score=46.67 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=34.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++++|++++++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 47999998 9999999999999999999999998766543
No 470
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.34 E-value=0.032 Score=51.50 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=33.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
.++|.|+|+|.-|.+.|..|.+.|++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 589999999999999999999999999999977664
No 471
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.33 E-value=0.026 Score=48.17 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=31.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|+|||+|.-|..-|..|..+|++|+++|++..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 4699999999999999999999999999998754
No 472
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.33 E-value=0.025 Score=53.64 Aligned_cols=36 Identities=36% Similarity=0.488 Sum_probs=32.0
Q ss_pred CCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 2 EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 2 ~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
+...-.|.|||+|..|.++|..|++.|++|.++++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 333457999999999999999999999999999986
No 473
>PRK06194 hypothetical protein; Provisional
Probab=95.31 E-value=0.066 Score=46.49 Aligned_cols=40 Identities=35% Similarity=0.497 Sum_probs=34.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..+|..|++.|++|+++|++.+.++..
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRA 46 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 367888887 8999999999999999999999998766554
No 474
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.30 E-value=0.09 Score=42.85 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=55.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEe--cC---
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCT--SN--- 78 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~--- 78 (297)
-++|.|||- ..+|.++|..|.+.|..|+++|.+.-..- ...+.+ +-+.+ .+
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~-------------~~~~~~----------~hs~t~~~~~~~ 118 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVF-------------TRGESI----------RHEKHHVTDEEA 118 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccc-------------cccccc----------ccccccccchhh
Confidence 478999998 55699999999999999999986643210 000000 00111 12
Q ss_pred -ccc-cCCCcEEEEeccccHH-HHHHHHHHHHhhcCCCeEEEec
Q 022434 79 -LKD-LHSADIIVEAIVESED-VKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 79 -~~~-~~~aD~Vi~~v~e~~~-~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
+.+ ++.||+||.+++-..- ++. ++++++++++.-
T Consensus 119 ~l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDV 155 (197)
T cd01079 119 MTLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINF 155 (197)
T ss_pred HHHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEc
Confidence 333 7899999999976543 333 345678877643
No 475
>PRK06101 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.049 Score=46.03 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=34.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++++|++++++..
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~ 41 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDEL 41 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 56888886 9999999999999999999999998766544
No 476
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.29 E-value=0.063 Score=45.19 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCCCCcEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022434 1 MEEKMKVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48 (297)
Q Consensus 1 M~~~~~~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 48 (297)
|+....+|.+| |+ ...|.++|..|+.+|++|++..|..++++++...+
T Consensus 1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~ 50 (246)
T COG4221 1 MTTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEI 50 (246)
T ss_pred CCCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhh
Confidence 54433455544 88 77899999999999999999999999998875543
No 477
>PRK07208 hypothetical protein; Provisional
Probab=95.27 E-value=0.025 Score=53.20 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=32.5
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|+ ..++|.|||+|.-|.+.|..|.++|++|++++.++
T Consensus 1 ~~-~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 1 MT-NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CC-CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 54 34689999999999999999999999999998754
No 478
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.26 E-value=0.2 Score=46.49 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=61.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEE
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMD---GL----DVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRC 75 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~---G~----~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 75 (297)
-+|+|-|+ |.+|-++..++++- |. .++++|+ +.++++...-.+++..-.+ +..+.+
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pl--------------l~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPL--------------LRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhh--------------cCCcEE
Confidence 47999998 99999999999873 32 4778898 5666554433333322111 112233
Q ss_pred -ecCccccCCCcEEEEeccc--------------cHHHHHHHHHHHHhhcCC-CeEEEecCCCC
Q 022434 76 -TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKA-SAILASNTSSI 123 (297)
Q Consensus 76 -~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~-~~ii~s~ts~~ 123 (297)
+++++++++||+||.+..- +..+.+.+...|.+..++ ..|++..|...
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPv 253 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFL 253 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcH
Confidence 4556679999999987632 122334444556666662 34444343333
No 479
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.06 Score=46.10 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=36.2
Q ss_pred CcEEEEECC-C-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022434 5 MKVMGVVGS-G-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS 47 (297)
Q Consensus 5 ~~~I~viG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (297)
.+++.|.|+ | .+|..++..|++.|++|++.++++++++...+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~ 61 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADE 61 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 367889997 6 699999999999999999999998877665443
No 480
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.077 Score=45.62 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=34.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
+++.|.|+ |.+|..+|..|++.|++|++.+|++++++...+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKARE 50 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45677787 789999999999999999999999887766543
No 481
>PRK06184 hypothetical protein; Provisional
Probab=95.23 E-value=0.025 Score=53.63 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|.|||+|..|...|..|++.|++|+++|+.++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5799999999999999999999999999998754
No 482
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.065 Score=45.93 Aligned_cols=40 Identities=33% Similarity=0.334 Sum_probs=34.6
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.+++.|.|+ |.+|..+|..|++.|++|++.+|+++.++..
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV 46 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 367888887 9999999999999999999999998766554
No 483
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.22 E-value=0.069 Score=46.35 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=50.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccccC
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|+|||- ..+|.++|..|.+.|..|++++.....++. .++
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~-------------------------------------~~~ 200 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAE-------------------------------------LTK 200 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHH-------------------------------------HHH
Confidence 478999998 677999999999999999998644322211 146
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHhhcCCCeEEEe
Q 022434 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.-..-+.. ++++++++++.
T Consensus 201 ~ADIvI~AvG~p~~i~~-------~~ik~gavVID 228 (284)
T PRK14190 201 QADILIVAVGKPKLITA-------DMVKEGAVVID 228 (284)
T ss_pred hCCEEEEecCCCCcCCH-------HHcCCCCEEEE
Confidence 79999999864432222 34577887763
No 484
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.078 Score=45.48 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=34.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 50 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV 50 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 367888887 7899999999999999999999998776554
No 485
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.22 E-value=0.23 Score=44.60 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=46.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCccc
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..||+|||+ .||...+..+... +++++ ++|+++++.+++.++ .|. ...+++++
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~----------~gi-------------~~y~~~ee 58 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR----------LGV-------------PLYCEVEE 58 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH----------hCC-------------CccCCHHH
Confidence 368999999 6899888888775 46655 779999887766321 121 24567776
Q ss_pred -cCCCcEEEEeccc
Q 022434 82 -LHSADIIVEAIVE 94 (297)
Q Consensus 82 -~~~aD~Vi~~v~e 94 (297)
+++.|+++.++|.
T Consensus 59 ll~d~Di~~V~ipt 72 (343)
T TIGR01761 59 LPDDIDIACVVVRS 72 (343)
T ss_pred HhcCCCEEEEEeCC
Confidence 6778888888754
No 486
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=95.21 E-value=0.45 Score=39.69 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=58.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh----hhc-ccCCCcEE-ecCc
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA----VGT-DAPRRLRC-TSNL 79 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~-~~~~~i~~-~~~~ 79 (297)
.+|-++|+|. ..-|..|++.|++|+.+|.++..++.+.+ +.|..... ... ....++++ ..|.
T Consensus 36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFA----------ENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHH----------HcCCCcceeccccceeeecCceEEEEccC
Confidence 5899999997 36677789999999999999998886421 11110000 000 00122332 2233
Q ss_pred cc-----cCCCcEEEEec---cccHHHHHHHHHHHHhhcCCCeE
Q 022434 80 KD-----LHSADIIVEAI---VESEDVKKKLFSELDKITKASAI 115 (297)
Q Consensus 80 ~~-----~~~aD~Vi~~v---~e~~~~k~~~~~~l~~~~~~~~i 115 (297)
.+ ...-|.|+++. .-+.+.....++.+.+.++++..
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 22 12358787643 12344466788888888888763
No 487
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=95.20 E-value=0.055 Score=47.02 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=38.4
Q ss_pred EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHH
Q 022434 7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSS 51 (297)
Q Consensus 7 ~I~vi-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~ 51 (297)
+.+|| |+ ..+|.+.|..||+.|++|+++.|+++++++..+.|++.
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~ 96 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEK 96 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 44544 77 78999999999999999999999999999987776643
No 488
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.054 Score=45.36 Aligned_cols=38 Identities=34% Similarity=0.278 Sum_probs=33.8
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 7 ~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++.|.|+ |.+|..++..|++.|++|++.+|++++++..
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~ 40 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVA 40 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 6888987 8999999999999999999999998876554
No 489
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.18 E-value=0.029 Score=53.21 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
-.|.|||+|..|+++|..+++.|++|.++|++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999999985
No 490
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.17 E-value=0.05 Score=46.43 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=34.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALV 42 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 42 (297)
.++|.|+|+ |.+|+.++..|++.|++|++..|++++..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 55 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK 55 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 578999997 99999999999999999999999987543
No 491
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.17 E-value=0.029 Score=53.71 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022434 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
..|.|||+|.+|+++|..|++.|++|+++|++
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 46999999999999999999999999999975
No 492
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.17 E-value=0.08 Score=47.77 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=54.1
Q ss_pred cEEEEECC-ChhHHHHHH-HHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCCcEEecCcc
Q 022434 6 KVMGVVGS-GQMGSGIAQ-LGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAVGTDAPRRLRCTSNLK 80 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~-~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
.+|+|||+ |..|.-+.. .|....++ +.++....+ . |... ........+.-..+.+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s----g--------------~~~~--~f~g~~~~v~~~~~~~ 61 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA----G--------------GAAP--SFGGKEGTLQDAFDID 61 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh----C--------------Cccc--ccCCCcceEEecCChh
Confidence 58999999 999999998 66666777 666543211 1 1100 0000001111112344
Q ss_pred ccCCCcEEEEeccccHHHHHHHHHHHHhhcCCC--eEEEecCCCC
Q 022434 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKAS--AILASNTSSI 123 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~--~ii~s~ts~~ 123 (297)
+++++|++|.|+|.... .++..++. ..+ +++++++|..
T Consensus 62 ~~~~~Divf~a~~~~~s--~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 62 ALKKLDIIITCQGGDYT--NEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred HhcCCCEEEECCCHHHH--HHHHHHHH---hCCCCeEEEECChHH
Confidence 57889999999986543 33444332 345 6788888754
No 493
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.17 E-value=0.083 Score=47.15 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.9
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEEE-EeCC
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVWL-VDTD 37 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~-G~~V~~-~d~~ 37 (297)
|.....||+|+|+|.||+..+..+.+. +.+++. .|++
T Consensus 1 ~~~~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~ 39 (338)
T PLN02358 1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF 39 (338)
T ss_pred CCCCceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence 544456999999999999999987754 567665 4544
No 494
>PRK10015 oxidoreductase; Provisional
Probab=95.17 E-value=0.028 Score=52.20 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=33.6
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022434 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~I~viG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|....-.|.|||+|.-|+..|..|+++|++|.++|+.+.
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 544345799999999999999999999999999998754
No 495
>PRK06720 hypothetical protein; Provisional
Probab=95.16 E-value=0.094 Score=42.04 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=32.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+.+.|.|+ +.+|.++|..|++.|++|.++|++.+.++..
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 56777787 5699999999999999999999997755443
No 496
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.16 E-value=0.18 Score=45.09 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=32.7
Q ss_pred CcEEEEECCChhHHHHHHHHHH-C-CCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGSGQMGSGIAQLGVM-D-GLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~ 44 (297)
-.+|.|+|+|.+|...++.+.+ . +.+|+++|+++++++.+
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a 205 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF 205 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH
Confidence 3589999999999988877765 4 46899999999887765
No 497
>PRK06179 short chain dehydrogenase; Provisional
Probab=95.16 E-value=0.22 Score=42.76 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=33.7
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022434 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 1 M~~~~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
|+ +.++|.|.|+ |.+|..++..|++.|++|++.+|+++..
T Consensus 1 m~-~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~ 41 (270)
T PRK06179 1 MS-NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARA 41 (270)
T ss_pred CC-CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhc
Confidence 54 3457888887 9999999999999999999999987543
No 498
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.088 Score=44.71 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=34.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|++.+++.+.++..
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~ 48 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAV 48 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 367888886 9999999999999999999999998766654
No 499
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.062 Score=45.80 Aligned_cols=40 Identities=28% Similarity=0.304 Sum_probs=35.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|+|+ |.+|..++..|++.|++|+++++++...+..
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA 47 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 368999998 9999999999999999999999998765543
No 500
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.13 E-value=0.084 Score=45.07 Aligned_cols=40 Identities=28% Similarity=0.194 Sum_probs=35.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022434 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~I~viG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..+|..|++.|++|++.+++.++++..
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 52 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEA 52 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 367889986 9999999999999999999999998766554
Done!