Query 022435
Match_columns 297
No_of_seqs 155 out of 525
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 31.6 23 0.00078 23.0 1.8 18 263-280 15-32 (44)
2 3arc_X Photosystem II PSBX pro 26.2 85 0.0029 19.8 3.6 28 253-283 4-31 (39)
3 2l2t_A Receptor tyrosine-prote 23.9 36 0.0012 22.1 1.6 17 263-279 14-30 (44)
4 1y29_A Huwentoxin-X; A double- 20.3 43 0.0015 19.4 1.3 14 60-74 9-22 (28)
5 3bz1_X Photosystem II PSBX pro 15.9 1.3E+02 0.0044 20.0 3.0 28 252-282 13-40 (50)
6 2knc_B Integrin beta-3; transm 15.6 80 0.0027 22.9 2.2 26 262-288 14-39 (79)
7 3rui_A Ubiquitin-like modifier 14.3 60 0.002 30.0 1.4 27 69-100 277-304 (340)
8 3ipz_A Monothiol glutaredoxin- 14.1 90 0.0031 23.1 2.2 23 68-90 30-52 (109)
9 1r7h_A NRDH-redoxin; thioredox 14.1 80 0.0027 20.7 1.8 21 69-89 9-29 (75)
10 2lqo_A Putative glutaredoxin R 13.9 1E+02 0.0036 22.4 2.5 22 69-90 12-33 (92)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=31.59 E-value=23 Score=23.03 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=12.3
Q ss_pred hHhhcchhhHHHHHHHHH
Q 022435 263 CAIVGGVFTVSGIIDAFI 280 (297)
Q Consensus 263 cAIiGGvftv~gliD~~~ 280 (297)
.++|||++.++-++=.++
T Consensus 15 ~gVVgGv~~~~ii~~~~~ 32 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIG 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHH
Confidence 467888888776664433
No 2
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=26.18 E-value=85 Score=19.84 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=19.5
Q ss_pred ccHHHHHHHHhHhhcchhhHHHHHHHHHHHH
Q 022435 253 VSFLHFLTNVCAIVGGVFTVSGIIDAFIYHG 283 (297)
Q Consensus 253 ~s~~~flt~lcAIiGGvftv~gliD~~~~~~ 283 (297)
.|+..||.++.| ||+..++ +.-.+++=+
T Consensus 4 pSL~nFl~Sl~a--G~vvvv~-i~~ali~VS 31 (39)
T 3arc_X 4 PSLKGFFIGLLS--GAVVLGL-TFAVLIAIS 31 (39)
T ss_dssp HHHHHHHHHHHH--HHHHHHH-HHHHHHHHH
T ss_pred hhHHHHHHHHHH--HHHHHHH-HHHHheeEe
Confidence 588899999854 7776666 655666543
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.93 E-value=36 Score=22.13 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=11.8
Q ss_pred hHhhcchhhHHHHHHHH
Q 022435 263 CAIVGGVFTVSGIIDAF 279 (297)
Q Consensus 263 cAIiGGvftv~gliD~~ 279 (297)
.++|||++.++-++=.+
T Consensus 14 ~gVVgGv~~v~ii~~~~ 30 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTF 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHH
Confidence 47788888877666443
No 4
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=20.30 E-value=43 Score=19.42 Aligned_cols=14 Identities=50% Similarity=1.383 Sum_probs=6.5
Q ss_pred CcCcCCCCCccccch
Q 022435 60 CYGAESSDEDCCNNC 74 (297)
Q Consensus 60 CYga~~~~~~CCntC 74 (297)
||++- ..-.||-+|
T Consensus 9 C~~~~-~riPCCG~C 22 (28)
T 1y29_A 9 CYGAT-QKIPCCGVC 22 (28)
T ss_dssp CCTTC-CSCCBSSCB
T ss_pred ccCCc-ccccccccc
Confidence 55542 233455555
No 5
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=15.93 E-value=1.3e+02 Score=20.02 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=19.6
Q ss_pred eccHHHHHHHHhHhhcchhhHHHHHHHHHHH
Q 022435 252 HVSFLHFLTNVCAIVGGVFTVSGIIDAFIYH 282 (297)
Q Consensus 252 r~s~~~flt~lcAIiGGvftv~gliD~~~~~ 282 (297)
..|+..||.++.| ||+..++ +.-.+++=
T Consensus 13 TpSL~NFl~Slva--G~vVvv~-i~~aLi~V 40 (50)
T 3bz1_X 13 TPSLKGFFIGLLS--GAVVLGL-TFAVLIAI 40 (50)
T ss_dssp CHHHHHHHHHHHH--HHHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHH-HHHHheee
Confidence 3689999999854 7776666 55556653
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.62 E-value=80 Score=22.85 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=14.1
Q ss_pred HhHhhcchhhHHHHHHHHHHHHHHHhh
Q 022435 262 VCAIVGGVFTVSGIIDAFIYHGQRAIK 288 (297)
Q Consensus 262 lcAIiGGvftv~gliD~~~~~~~~~i~ 288 (297)
+.+|||||+ ++|++==++++....+.
T Consensus 14 v~gvi~gil-liGllllliwk~~~~i~ 39 (79)
T 2knc_B 14 LLSVMGAIL-LIGLAALLIWKLLITIH 39 (79)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 356666654 34555556666554443
No 7
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=14.31 E-value=60 Score=30.02 Aligned_cols=27 Identities=26% Similarity=0.757 Sum_probs=19.0
Q ss_pred ccccch-HHHHHHHHhcCCcCCCCCchhhhhhh
Q 022435 69 DCCNNC-EEVREAYRKKGWALSNPDLIDQCKRE 100 (297)
Q Consensus 69 ~CCntC-edV~~ay~~~gw~~~~~~~ieQC~~e 100 (297)
..|-.| +.|.++|++.||.| +.+|.++
T Consensus 277 ~~C~~C~~~~~~~~~~~~~~~-----~~~~~~~ 304 (340)
T 3rui_A 277 EHCPACSPKVIEAFTDLGWEF-----VKKALEH 304 (340)
T ss_dssp TTCTTTCHHHHHHHHHHTHHH-----HHHHHHC
T ss_pred CCCCCCCHHHHHHHHhCCHHH-----HHHHhcC
Confidence 445555 57999999999987 4555443
No 8
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=14.14 E-value=90 Score=23.11 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=19.0
Q ss_pred CccccchHHHHHHHHhcCCcCCC
Q 022435 68 EDCCNNCEEVREAYRKKGWALSN 90 (297)
Q Consensus 68 ~~CCntCedV~~ay~~~gw~~~~ 90 (297)
...|..|..+++...++|..+..
T Consensus 30 ~p~Cp~C~~ak~~L~~~gi~~~~ 52 (109)
T 3ipz_A 30 FPMCGFSNTVVQILKNLNVPFED 52 (109)
T ss_dssp SBSSHHHHHHHHHHHHTTCCCEE
T ss_pred CCCChhHHHHHHHHHHcCCCcEE
Confidence 35788999999999999987743
No 9
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=14.11 E-value=80 Score=20.67 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=17.7
Q ss_pred ccccchHHHHHHHHhcCCcCC
Q 022435 69 DCCNNCEEVREAYRKKGWALS 89 (297)
Q Consensus 69 ~CCntCedV~~ay~~~gw~~~ 89 (297)
.+|..|..++...++++..+.
T Consensus 9 ~~C~~C~~~~~~l~~~~i~~~ 29 (75)
T 1r7h_A 9 PACVQCTATKKALDRAGLAYN 29 (75)
T ss_dssp TTCHHHHHHHHHHHHTTCCCE
T ss_pred CCChHHHHHHHHHHHcCCCcE
Confidence 488999999999999887663
No 10
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=13.91 E-value=1e+02 Score=22.40 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.7
Q ss_pred ccccchHHHHHHHHhcCCcCCC
Q 022435 69 DCCNNCEEVREAYRKKGWALSN 90 (297)
Q Consensus 69 ~CCntCedV~~ay~~~gw~~~~ 90 (297)
.+|.-|..+++..+++|.++..
T Consensus 12 ~~Cp~C~~aK~~L~~~gi~y~~ 33 (92)
T 2lqo_A 12 SWCGYCLRLKTALTANRIAYDE 33 (92)
T ss_dssp TTCSSHHHHHHHHHHTTCCCEE
T ss_pred CCCHhHHHHHHHHHhcCCceEE
Confidence 4788899999999999998753
Done!