Your job contains 1 sequence.
>022436
MSQSSAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGK
ELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQV
HFFKMQGPPCVPSALRAGLAWLLWNIPRKGLMIIRIHILKLGSETLSGVLYHPDHPGPST
SFCQSNDVGAIIPYTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYP
NREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLRQGEGANS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022436
(297 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2199824 - symbol:AT1G76110 species:3702 "Arabi... 471 6.3e-89 2
TAIR|locus:2010587 - symbol:AT1G04880 species:3702 "Arabi... 331 6.9e-55 2
TAIR|locus:2088160 - symbol:AT3G13350 species:3702 "Arabi... 247 1.8e-44 2
TAIR|locus:2020517 - symbol:AT1G55650 species:3702 "Arabi... 255 5.1e-40 3
UNIPROTKB|E1C9H0 - symbol:ARID2 "Uncharacterized protein"... 227 3.0e-17 1
UNIPROTKB|Q68CP9 - symbol:ARID2 "AT-rich interactive doma... 213 9.2e-16 1
ZFIN|ZDB-GENE-030131-6311 - symbol:arid2 "AT rich interac... 200 1.2e-13 2
UNIPROTKB|E2RFL8 - symbol:ARID2 "Uncharacterized protein"... 171 1.3e-09 1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 142 1.8e-09 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 139 3.8e-09 1
DICTYBASE|DDB_G0275333 - symbol:DDB_G0275333 "ARID/BRIGHT... 158 7.0e-09 1
UNIPROTKB|K7EJ04 - symbol:ARID3A "AT-rich interactive dom... 135 1.1e-08 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 140 3.3e-08 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 139 4.2e-08 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 126 1.1e-07 1
DICTYBASE|DDB_G0270260 - symbol:nhp6 "HMG1/2 (high mobili... 126 1.1e-07 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 138 1.5e-07 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 124 1.8e-07 1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 124 1.8e-07 1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil... 124 1.8e-07 1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot... 124 1.8e-07 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 124 1.8e-07 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 135 2.1e-07 1
UNIPROTKB|F5H1F7 - symbol:KDM5A "Lysine-specific demethyl... 151 2.4e-07 1
UNIPROTKB|F1Q4J4 - symbol:KDM5A "Uncharacterized protein"... 151 2.5e-07 1
UNIPROTKB|P29375 - symbol:KDM5A "Lysine-specific demethyl... 151 2.5e-07 1
UNIPROTKB|F1MQ59 - symbol:KDM5A "Uncharacterized protein"... 151 2.5e-07 1
RGD|1305429 - symbol:Kdm5a "lysine (K)-specific demethyla... 149 2.6e-07 1
UNIPROTKB|E9PSW7 - symbol:Jarid1a "Protein Jarid1a" speci... 149 2.6e-07 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 134 2.8e-07 1
UNIPROTKB|C9JQA7 - symbol:HMG20B "SWI/SNF-related matrix-... 121 3.9e-07 1
MGI|MGI:2136980 - symbol:Kdm5a "lysine (K)-specific demet... 149 4.3e-07 1
UNIPROTKB|E9PSM3 - symbol:Jarid1a "Protein Jarid1a" speci... 149 4.3e-07 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 132 4.9e-07 1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot... 119 6.5e-07 1
UNIPROTKB|H3BQ92 - symbol:ARID3B "AT-rich interactive dom... 118 8.5e-07 1
UNIPROTKB|Q4H0T5 - symbol:TFAM "Transcription factor A, m... 126 8.8e-07 2
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 130 9.0e-07 1
UNIPROTKB|E1BGZ3 - symbol:ARID3A "Uncharacterized protein... 140 1.2e-06 1
UNIPROTKB|Q99856 - symbol:ARID3A "AT-rich interactive dom... 140 1.2e-06 1
UNIPROTKB|F1S6T2 - symbol:ARID3A "Uncharacterized protein... 140 1.2e-06 1
MGI|MGI:1328360 - symbol:Arid3a "AT rich interactive doma... 140 1.2e-06 1
UNIPROTKB|F1PDC9 - symbol:ARID3A "Uncharacterized protein... 140 1.2e-06 1
UNIPROTKB|F1N8B1 - symbol:LOC100857252 "Uncharacterized p... 135 1.8e-06 1
UNIPROTKB|Q5ZKF4 - symbol:HMG20A "High mobility group pro... 135 1.8e-06 1
UNIPROTKB|E1BI80 - symbol:ARID3B "Uncharacterized protein... 138 1.8e-06 1
UNIPROTKB|F1NL47 - symbol:ARID3B "Uncharacterized protein... 138 1.8e-06 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 126 1.9e-06 1
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein... 127 2.2e-06 1
UNIPROTKB|G3MWU0 - symbol:ARID3C "Uncharacterized protein... 135 2.2e-06 1
UNIPROTKB|I3L5S4 - symbol:ARID3C "Uncharacterized protein... 135 2.2e-06 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 114 2.3e-06 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 114 2.3e-06 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 126 2.4e-06 1
MGI|MGI:3650624 - symbol:Arid3c "AT rich interactive doma... 135 2.4e-06 1
RGD|1560943 - symbol:Arid3c "AT rich interactive domain 3... 135 2.5e-06 1
UNIPROTKB|E2RGA0 - symbol:ARID3C "Uncharacterized protein... 135 2.5e-06 1
UNIPROTKB|A6NKF2 - symbol:ARID3C "AT-rich interactive dom... 135 2.5e-06 1
UNIPROTKB|F1MGP2 - symbol:ARID3C "Uncharacterized protein... 135 2.5e-06 1
UNIPROTKB|F1SEC1 - symbol:ARID3C "Uncharacterized protein... 135 2.5e-06 1
FB|FBgn0011764 - symbol:Dsp1 "Dorsal switch protein 1" sp... 134 2.9e-06 1
UNIPROTKB|Q5T7C0 - symbol:HMGB1 "High mobility group prot... 113 3.0e-06 1
UNIPROTKB|D4A2L7 - symbol:D4A2L7 "Uncharacterized protein... 113 3.0e-06 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 126 3.2e-06 1
UNIPROTKB|Q5D144 - symbol:TFAM "Transcription factor A, m... 125 3.8e-06 2
MGI|MGI:1914117 - symbol:Hmg20a "high mobility group 20A"... 131 5.1e-06 1
UNIPROTKB|Q0VCL5 - symbol:HMG20A "High-mobility group 20A... 131 5.1e-06 1
UNIPROTKB|E2RKW6 - symbol:HMG20A "Uncharacterized protein... 131 5.1e-06 1
UNIPROTKB|Q9NP66 - symbol:HMG20A "High mobility group pro... 131 5.1e-06 1
UNIPROTKB|E2RFI5 - symbol:ARID3B "Uncharacterized protein... 134 5.3e-06 1
RGD|1306335 - symbol:Arid3b "AT rich interactive domain 3... 134 5.3e-06 1
UNIPROTKB|Q8IVW6 - symbol:ARID3B "AT-rich interactive dom... 134 5.3e-06 1
MGI|MGI:1930768 - symbol:Arid3b "AT rich interactive doma... 134 5.4e-06 1
FB|FBgn0042085 - symbol:Bap170 "Brahma associated protein... 139 5.7e-06 1
RGD|1564760 - symbol:Hmg20a "high mobility group 20A" spe... 131 6.0e-06 1
ZFIN|ZDB-GENE-070209-182 - symbol:arid3b "AT rich interac... 133 6.4e-06 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 110 6.4e-06 1
MGI|MGI:107810 - symbol:Tfam "transcription factor A, mit... 126 7.9e-06 1
UNIPROTKB|I3L967 - symbol:ARID3B "Uncharacterized protein... 129 8.2e-06 1
UNIPROTKB|F5H322 - symbol:KDM5A "Lysine-specific demethyl... 109 8.3e-06 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 113 1.2e-05 1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 121 1.7e-05 1
UNIPROTKB|C9J8X5 - symbol:HMG20B "SWI/SNF-related matrix-... 121 1.9e-05 1
UNIPROTKB|F1NAK8 - symbol:LOC100858693 "Uncharacterized p... 126 2.2e-05 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 118 2.3e-05 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 120 2.4e-05 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 120 2.4e-05 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 120 2.4e-05 1
UNIPROTKB|Q5T7C6 - symbol:HMGB1 "High mobility group prot... 113 2.4e-05 1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 120 2.4e-05 1
UNIPROTKB|F1NN75 - symbol:KDM5A "Uncharacterized protein"... 140 3.0e-05 2
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 119 3.1e-05 1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 119 3.1e-05 1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 119 3.1e-05 1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 119 3.1e-05 1
ZFIN|ZDB-GENE-070112-1882 - symbol:zgc:158706 "zgc:158706... 123 3.6e-05 2
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 103 3.8e-05 1
UNIPROTKB|E1BA21 - symbol:TFAM "Transcription factor A, m... 117 3.9e-05 2
UNIPROTKB|Q0II87 - symbol:TFAM "Transcription factor A, m... 117 3.9e-05 2
UNIPROTKB|Q00059 - symbol:TFAM "Transcription factor A, m... 120 4.2e-05 1
WARNING: Descriptions of 65 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2199824 [details] [associations]
symbol:AT1G76110 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006333 "chromatin
assembly or disassembly" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0010310 "regulation of hydrogen peroxide metabolic process"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0030154 "cell differentiation"
evidence=RCA] [GO:0031348 "negative regulation of defense response"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC009978 Gene3D:1.10.150.60
SUPFAM:SSF46774 eggNOG:NOG327790 HOGENOM:HOG000243289
ProtClustDB:CLSN2681954 HSSP:P11632 EMBL:AY099630 EMBL:BT008823
IPI:IPI00540147 PIR:B96789 RefSeq:NP_177738.1 UniGene:At.43665
ProteinModelPortal:Q9SGS2 SMR:Q9SGS2 IntAct:Q9SGS2 PaxDb:Q9SGS2
PRIDE:Q9SGS2 EnsemblPlants:AT1G76110.1 GeneID:843943
KEGG:ath:AT1G76110 TAIR:At1g76110 InParanoid:Q9SGS2 OMA:FMIPVIG
PhylomeDB:Q9SGS2 Genevestigator:Q9SGS2 Uniprot:Q9SGS2
Length = 338
Score = 471 (170.9 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 91/117 (77%), Positives = 95/117 (81%)
Query: 18 KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGY 77
K YP PL+ HE V KD VFWDTLRRFH IM TKFMIPVIGGKELDLHVLYVE T RGGY
Sbjct: 25 KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84
Query: 78 EKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSA 134
EKVV EKKWREVG VF+FS TTTSASFVLRKHYL LL+HYEQVH F +GP P A
Sbjct: 85 EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIA 141
Score = 436 (158.5 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 87/140 (62%), Positives = 101/140 (72%)
Query: 159 LKLGSETLSGVLYHPDHPGPSTSFCQSNDVGAIIPY--TPNXXXXXXXXXXXXXXXDPSY 216
+KLGSE L+GVLYH PGPS+S + A++PY T DP+Y
Sbjct: 196 VKLGSEILNGVLYHSAQPGPSSSPTAVLN-NAVVPYVETGRRRRRLGKRRRSRRREDPNY 254
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PKPNRSGYNFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EER VYQ+IGLKDKERY
Sbjct: 255 PKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERY 314
Query: 277 NRELKEYKERLKLRQGEGAN 296
REL EY+E L+LR G+ N
Sbjct: 315 QRELNEYRETLRLRDGDMTN 334
>TAIR|locus:2010587 [details] [associations]
symbol:AT1G04880 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC004809 Gene3D:1.10.150.60
SUPFAM:SSF46774 HSSP:P07155 HOGENOM:HOG000243289
ProtClustDB:CLSN2681954 EMBL:BT020255 EMBL:BT020442 EMBL:AB493433
IPI:IPI00523331 PIR:B86182 RefSeq:NP_171980.1 UniGene:At.42427
ProteinModelPortal:Q9MAT6 SMR:Q9MAT6 PaxDb:Q9MAT6 PRIDE:Q9MAT6
EnsemblPlants:AT1G04880.1 GeneID:839388 KEGG:ath:AT1G04880
TAIR:At1g04880 eggNOG:NOG236327 InParanoid:Q9MAT6 OMA:EMEDYRE
PhylomeDB:Q9MAT6 Genevestigator:Q9MAT6 Uniprot:Q9MAT6
Length = 448
Score = 331 (121.6 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 64/131 (48%), Positives = 94/131 (71%)
Query: 1 MSQSSAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGK 60
M+ SS K +G SV + + P +++E V DP +F +L R H ++GTKFM+P+IGG+
Sbjct: 1 MASSSCLK-QG-SVPMNNVCVTPEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGR 58
Query: 61 ELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQV 120
+LDLH L+VE T+RGG K++ E++W+EV A F F PT T+AS+VLRK+Y +LL +YEQ+
Sbjct: 59 DLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQI 118
Query: 121 HFFKMQG--PP 129
+FF+ G PP
Sbjct: 119 YFFRSNGQIPP 129
Score = 253 (94.1 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 53/140 (37%), Positives = 78/140 (55%)
Query: 161 LGSETLSGVLYHPDHPGPSTSFCQSNDVGAIIPYTPNXXXXXXXXXXXXXXX-------- 212
+GSE L GVLY P + S+ ++P T N
Sbjct: 196 IGSEQLKGVLYQL-LPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSE 254
Query: 213 ----DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNI 268
DP +PKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE W L+ +E+ +YQ
Sbjct: 255 IKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGK 314
Query: 269 GLKDKERYNRELKEYKERLK 288
++DKERY E+++Y+E+ K
Sbjct: 315 AMEDKERYRTEMEDYREKKK 334
>TAIR|locus:2088160 [details] [associations]
symbol:AT3G13350 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] InterPro:IPR009071 InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 Pfam:PF00505 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.150.60 SUPFAM:SSF46774 eggNOG:NOG327790
EMBL:AB024034 EMBL:AF361582 EMBL:AY133557 EMBL:AY087770
IPI:IPI00541454 RefSeq:NP_566454.1 UniGene:At.27664 HSSP:P07155
ProteinModelPortal:Q9LTT3 SMR:Q9LTT3 IntAct:Q9LTT3 PaxDb:Q9LTT3
PRIDE:Q9LTT3 EnsemblPlants:AT3G13350.1 GeneID:820535
KEGG:ath:AT3G13350 TAIR:At3g13350 HOGENOM:HOG000243289
InParanoid:Q9LTT3 OMA:GVLYHIP PhylomeDB:Q9LTT3
ProtClustDB:CLSN2681954 Genevestigator:Q9LTT3 Uniprot:Q9LTT3
Length = 319
Score = 247 (92.0 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 46/109 (42%), Positives = 69/109 (63%)
Query: 16 EDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRG 75
+D PA ++D+ ++ +FW+ LR F + +P +GG LDLH L++E T+RG
Sbjct: 28 DDSSVPA---KYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRG 84
Query: 76 GYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFK 124
G E+VV ++KW+EV F F T TSASFVLRK+YL L+ E V++ +
Sbjct: 85 GIERVVKDRKWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYLE 133
Score = 238 (88.8 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 54/127 (42%), Positives = 71/127 (55%)
Query: 159 LKLGSETLSGVLYH-PDHPGPSTSFCQSNDVGAIIPYTPNXXXXXXXXXXXXXXXDPSYP 217
+KLGS+ L GVLYH P P S ++ AI+ D P
Sbjct: 185 MKLGSQELKGVLYHIPQTPSQSQQTMETPS--AIV----QSSQRRHRKKSKLAVVDTQKP 238
Query: 218 KPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYN 277
K +RSGYNFFFAE++ +LK Y +ER TK IG W+NL+ E++VYQ+ G+KD ERY
Sbjct: 239 KCHRSGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYR 298
Query: 278 RELKEYK 284
E+ EYK
Sbjct: 299 IEMLEYK 305
>TAIR|locus:2020517 [details] [associations]
symbol:AT1G55650 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR009071 InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 Pfam:PF00505 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC002328
IPI:IPI00543464 PIR:H96598 RefSeq:NP_175961.1 UniGene:At.52216
ProteinModelPortal:Q9LG02 SMR:Q9LG02 PRIDE:Q9LG02
EnsemblPlants:AT1G55650.1 GeneID:842014 KEGG:ath:AT1G55650
TAIR:At1g55650 InParanoid:Q9LG02 Genevestigator:Q9LG02
Uniprot:Q9LG02
Length = 337
Score = 255 (94.8 bits), Expect = 5.1e-40, Sum P(3) = 5.1e-40
Identities = 44/98 (44%), Positives = 70/98 (71%)
Query: 27 HEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKW 86
++D+ ++P +FW+ LR FH KF IP++GGK LDLH L+ E T+RGG EKV+ +++
Sbjct: 30 YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89
Query: 87 REVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFK 124
+EV F F T T+++FVLRK YL +L+ +E +++F+
Sbjct: 90 KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYFQ 127
Score = 148 (57.2 bits), Expect = 5.1e-40, Sum P(3) = 5.1e-40
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK R+GYNFF AE+ ++K+ ++ K G WTNLS +RKVY +D +RY
Sbjct: 215 PKRQRTGYNFFVAEQSVRIKAENAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRY 274
Query: 277 NRELKEYKERLKLRQGE 293
E+ +Y+ ++ R E
Sbjct: 275 KMEILQYRSLMESRVAE 291
Score = 50 (22.7 bits), Expect = 5.1e-40, Sum P(3) = 5.1e-40
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 160 KLGSETLSGVLYH 172
K+GSE L G+LYH
Sbjct: 180 KVGSEKLKGMLYH 192
>UNIPROTKB|E1C9H0 [details] [associations]
symbol:ARID2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257 PROSITE:PS00028
PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355 SMART:SM00501
GO:GO:0006355 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0006337 Gene3D:1.10.150.60
SUPFAM:SSF46774 OMA:IQNSIPQ GeneTree:ENSGT00390000016138
EMBL:AADN02010001 EMBL:AADN02010002 EMBL:AADN02010003
IPI:IPI00593469 Ensembl:ENSGALT00000015735 Uniprot:E1C9H0
Length = 1831
Score = 227 (85.0 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 44/99 (44%), Positives = 62/99 (62%)
Query: 26 SHEDVSKDPIVFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEK 84
+H D + + F D LR+FH G+ F IPV+GGKELDLH LY TT GG+ KV +
Sbjct: 8 NHADQRRKGLAFLDELRQFHHSRGSPFKKIPVVGGKELDLHALYTRVTTLGGFGKVSEKN 67
Query: 85 KWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
+W E+ F F + ++A+F L+++YL L YE+VH F
Sbjct: 68 QWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
>UNIPROTKB|Q68CP9 [details] [associations]
symbol:ARID2 "AT-rich interactive domain-containing protein
2" species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006337 "nucleosome disassembly" evidence=IDA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257 PROSITE:PS00028
PROSITE:PS50157 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 EMBL:DQ096628 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0016568 GO:GO:0006337
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AY727870 EMBL:AL832200
EMBL:BX537879 EMBL:CR749833 EMBL:AK027718 EMBL:AK127872
EMBL:BC090062 EMBL:AB046777 IPI:IPI00444237 IPI:IPI00470537
IPI:IPI00647133 RefSeq:NP_689854.2 UniGene:Hs.317304
ProteinModelPortal:Q68CP9 SMR:Q68CP9 DIP:DIP-33391N IntAct:Q68CP9
STRING:Q68CP9 PhosphoSite:Q68CP9 DMDM:73921721 PaxDb:Q68CP9
PRIDE:Q68CP9 DNASU:196528 Ensembl:ENST00000334344 GeneID:196528
KEGG:hsa:196528 UCSC:uc001ror.3 CTD:196528 GeneCards:GC12P046123
HGNC:HGNC:18037 MIM:609539 neXtProt:NX_Q68CP9 PharmGKB:PA134916396
eggNOG:NOG311317 HOVERGEN:HBG068777 InParanoid:Q68CP9 KO:K11765
OMA:IQNSIPQ OrthoDB:EOG49KFPP GenomeRNAi:196528 NextBio:89525
PMAP-CutDB:Q68CP9 ArrayExpress:Q68CP9 Bgee:Q68CP9
Genevestigator:Q68CP9 Uniprot:Q68CP9
Length = 1835
Score = 213 (80.0 bits), Expect = 9.2e-16, P = 9.2e-16
Identities = 42/96 (43%), Positives = 59/96 (61%)
Query: 29 DVSKDPIVFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWR 87
D + + F D LR+FH G+ F IP +GGKELDLH LY TT GG+ KV + +W
Sbjct: 11 DERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG 70
Query: 88 EVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
E+ F F + ++A+F L+++YL L YE+VH F
Sbjct: 71 EIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
>ZFIN|ZDB-GENE-030131-6311 [details] [associations]
symbol:arid2 "AT rich interactive domain 2 (ARID,
RFX-like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 InterPro:IPR016024 Pfam:PF01388 Pfam:PF02257
PROSITE:PS00028 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 ZFIN:ZDB-GENE-030131-6311 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:CR847994 EMBL:AL929171
GeneTree:ENSGT00390000016138 IPI:IPI00933367
Ensembl:ENSDART00000113360 Uniprot:E7F3J3
Length = 1573
Score = 200 (75.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 40/88 (45%), Positives = 58/88 (65%)
Query: 37 FWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D LR+FH G+ F +PV+GGKELDL LYV + GG+ KV + +W E+ F+F
Sbjct: 19 FLDELRQFHHSRGSPFKKVPVVGGKELDLGALYVRVVSLGGFAKVSDKNQWVELVEDFQF 78
Query: 96 SPTTTSASFVLRKHYLTLLYHYEQVHFF 123
+ ++A+FVL+++YL L YE+VH F
Sbjct: 79 PRSCSNAAFVLKQYYLRYLEKYEKVHHF 106
Score = 39 (18.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 128 PPCVPSALRAGLAWLLWNIPRKGLMIIRIHILKLGSETLSGVLYHPDHPGPST 180
PPC P+A +P + I++ +++ T S P+H G ST
Sbjct: 696 PPCPPAAAP---------VPIRPNDILKTAMIQSSIPTASAAPAVPNHSGSST 739
>UNIPROTKB|E2RFL8 [details] [associations]
symbol:ARID2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001606 InterPro:IPR003150
InterPro:IPR007087 InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257
PROSITE:PS00028 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 GO:GO:0006355 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0006337
Gene3D:1.10.150.60 SUPFAM:SSF46774 OMA:IQNSIPQ
GeneTree:ENSGT00390000016138 EMBL:AAEX03015115 EMBL:AAEX03015116
Ensembl:ENSCAFT00000014865 Uniprot:E2RFL8
Length = 1836
Score = 171 (65.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 29 DVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWR 87
D + + F D LR+FH G+ +IP +GG DLH L E+ GG+ KV + +W
Sbjct: 11 DERRKGLAFLDELRQFHHSRGSPCQIIPAVGGNPPDLHGLKPESPPVGGFAKVSEKNQWG 70
Query: 88 EVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
E+ F F + ++A+F L+++YL L YE+VH F
Sbjct: 71 EIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 142 (55.0 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK N S + FF E K+K+ P+ + ++G+ W L+ ER+ Y+ +
Sbjct: 12 DPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQ 71
Query: 272 DKERYNRELKEYKERLKLRQGE 293
DKERY RE KEY KL GE
Sbjct: 72 DKERYERERKEYDT--KLANGE 91
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 139 (54.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NLS E++ Y N K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEGA 295
KE+Y +++ +YK + K +GA
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKGA 172
Score = 130 (50.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y+FF E+H K P EF+K E W +S +E+ + I
Sbjct: 5 DPKKPKGKMSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>DICTYBASE|DDB_G0275333 [details] [associations]
symbol:DDB_G0275333 "ARID/BRIGHT DNA binding
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR001606 InterPro:IPR025718 Pfam:PF01388 Pfam:PF13867
PROSITE:PS51011 SMART:SM00501 dictyBase:DDB_G0275333 GO:GO:0005634
GO:GO:0003677 EMBL:AAFI02000013 Gene3D:1.10.150.60 SUPFAM:SSF46774
eggNOG:NOG327790 RefSeq:XP_643660.1 ProteinModelPortal:Q553R0
EnsemblProtists:DDB0216390 GeneID:8619925 KEGG:ddi:DDB_G0275333
InParanoid:Q553R0 Uniprot:Q553R0
Length = 478
Score = 158 (60.7 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 35/86 (40%), Positives = 48/86 (55%)
Query: 44 FHFIM--GTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTT 100
F+F+ GT IP+ KEL+L+ LY +RGG E V+ K WR++ P T
Sbjct: 53 FYFMTQRGTPIEKIPIFDHKELNLYKLYNCVISRGGLEAVIDNKLWRQITTDLAVDPERT 112
Query: 101 SASFVLRKHYLTLLYHYEQVHFFKMQ 126
A F LR HYL LY YE+ H+ K++
Sbjct: 113 DAGFRLRIHYLKYLYPYERKHYLKIE 138
>UNIPROTKB|K7EJ04 [details] [associations]
symbol:ARID3A "AT-rich interactive domain-containing
protein 3A" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC005391 EMBL:AC005379
HGNC:HGNC:3031 InterPro:IPR023334 PROSITE:PS51486
Ensembl:ENST00000587532 Uniprot:K7EJ04
Length = 182
Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP++ + LDL +LYV T +GG +V+ +K WRE+ + TSA+F LR Y+
Sbjct: 11 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 70
Query: 114 LYHYE 118
LY YE
Sbjct: 71 LYPYE 75
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 140 (54.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NLS E++ Y N K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 147
Query: 272 DKERYNRELKEYKERLKLRQGEGA 295
KE+Y +++ +YK + K +GA
Sbjct: 148 LKEKYEKDVADYKSKGKFDGAKGA 171
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K + P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKNPEV-PVNFAEFSKKCSERWKTMSSKEKAKFDEMA 63
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 64 KADKVRYDREMKDY 77
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 139 (54.0 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NLS E++ Y N K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEGA 295
KE+Y +++ +YK + K +GA
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKGA 172
Score = 124 (48.7 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 126 (49.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S Y FF + K++ P + KM+GE W +LS +ERK Y++
Sbjct: 23 DPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAA 82
Query: 272 DKERYNRELKEYK 284
DK+RY E YK
Sbjct: 83 DKKRYEDEKAAYK 95
>DICTYBASE|DDB_G0270260 [details] [associations]
symbol:nhp6 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006325 "chromatin organization"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
OMA:ERVKNAN Uniprot:Q55C24
Length = 141
Score = 126 (49.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + P+ S + FF + +K+ +PN E ++G+ W +S E++K Y+ + +
Sbjct: 49 DENAPRRYLSPFIFFSKDHRSVIKNSHPNCSFGEIGSLLGQEWAKISAEDKKKYEKLAAE 108
Query: 272 DKERYNRELKEYKERLKLR-QGEGAN 296
DK+R+ E K Y E+LK + Q E ++
Sbjct: 109 DKKRWELEKKNYDEKLKTQSQAESSS 134
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 138 (53.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NLS E++ Y N K
Sbjct: 107 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNKAAK 166
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
KE+Y +++ +YK + K +G
Sbjct: 167 LKEKYEKDVADYKSKGKFDGAKG 189
Score = 124 (48.7 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 23 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 82
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 83 KADKVRYDREMKDY 96
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 124 (48.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 102 (41.0 bits), Expect = 0.00069, P = 0.00069
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NL+ E++ Y K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 272 DKERY 276
KE+Y
Sbjct: 149 LKEKY 153
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 124 (48.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFT---KMIGESWTNLSPEERKVYQNIG 269
DP PK S Y F+ +K ++ P ++ K+IGE+W LSP ++ Y+
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 270 LKDKERYNRELKEYKER 286
DK RY++E++EY+++
Sbjct: 80 QLDKVRYSKEIEEYRKK 96
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 124 (48.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFT---KMIGESWTNLSPEERKVYQNIG 269
DP PK + S Y FF EK ++ S P ++ KMIGE+W L +E+ ++
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 270 LKDKERYNRELKEYKERLKLR 290
+DK RY +E EY +K++
Sbjct: 77 QEDKLRYEKEKAEYAN-MKMK 96
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 124 (48.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFT---KMIGESWTNLSPEERKVYQNIG 269
DP PK + S Y FF EK ++ S P ++ KMIGE+W L +E+ ++
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 270 LKDKERYNRELKEYKERLKLR 290
+DK RY +E EY +K++
Sbjct: 77 QEDKLRYEKEKAEYAN-MKMK 96
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 124 (48.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFT---KMIGESWTNLSPEERKVYQNIG 269
DP PK S Y F+ +K ++ P ++ K+IGE+W LSP ++ Y+
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 270 LKDKERYNRELKEYKER 286
DK RY++E++EY+++
Sbjct: 80 QLDKVRYSKEIEEYRKK 96
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 135 (52.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NLS E++ Y N K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
KE+Y +++ +YK + K +G
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKG 171
Score = 124 (48.7 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|F5H1F7 [details] [associations]
symbol:KDM5A "Lysine-specific demethylase 5A" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016706 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, 2-oxoglutarate as one donor, and incorporation
of one atom each of oxygen into both donors" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR001606 InterPro:IPR001965
InterPro:IPR003347 InterPro:IPR004198 InterPro:IPR013637
InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388 Pfam:PF02373
Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016 PROSITE:PS51011
PROSITE:PS51184 SMART:SM00249 SMART:SM00501 SMART:SM00558
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0016706 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC005844
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
EMBL:AC007406 HGNC:HGNC:9886 ChiTaRS:KDM5A IPI:IPI01018722
ProteinModelPortal:F5H1F7 SMR:F5H1F7 Ensembl:ENST00000382815
ArrayExpress:F5H1F7 Bgee:F5H1F7 Uniprot:F5H1F7
Length = 1636
Score = 151 (58.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S +L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGS-LLKSHYERILYPYE 170
>UNIPROTKB|F1Q4J4 [details] [associations]
symbol:KDM5A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0016706
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
InterPro:IPR001965 InterPro:IPR003347 InterPro:IPR004198
InterPro:IPR013637 InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388
Pfam:PF02373 Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016
PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249 SMART:SM00501
SMART:SM00558 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0016706 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
GeneTree:ENSGT00530000063118 KO:K11446 CTD:5927 OMA:ECSKPRE
EMBL:AAEX03015319 EMBL:AAEX03015320 RefSeq:XP_854690.3
Ensembl:ENSCAFT00000025008 GeneID:477727 KEGG:cfa:477727
Uniprot:F1Q4J4
Length = 1688
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S +L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGS-LLKSHYERILYPYE 170
>UNIPROTKB|P29375 [details] [associations]
symbol:KDM5A "Lysine-specific demethylase 5A" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016706 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, 2-oxoglutarate as one donor, and incorporation
of one atom each of oxygen into both donors" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016702
"oxidoreductase activity, acting on single donors with
incorporation of molecular oxygen, incorporation of two atoms of
oxygen" evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0019907 "cyclin-dependent
protein kinase activating kinase holoenzyme complex" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR001606 InterPro:IPR001965
InterPro:IPR003347 InterPro:IPR004198 InterPro:IPR013637
InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388 Pfam:PF02373
Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016 PROSITE:PS51011
PROSITE:PS51184 SMART:SM00249 SMART:SM00501 SMART:SM00558
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003700 GO:GO:0003682 GO:GO:0016568 GO:GO:0006366
GO:GO:0016706 GO:GO:0016702 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC005844
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
EMBL:AC007406 eggNOG:NOG327026 KO:K11446 EMBL:S66431 EMBL:AB209999
EMBL:BC048307 EMBL:BC053893 EMBL:BC110916 IPI:IPI00021363
IPI:IPI01014284 PIR:I78879 RefSeq:NP_001036068.1 UniGene:Hs.76272
PDB:2JXJ PDB:2KGG PDB:2KGI PDB:3GL6 PDBsum:2JXJ PDBsum:2KGG
PDBsum:2KGI PDBsum:3GL6 ProteinModelPortal:P29375 SMR:P29375
DIP:DIP-472N IntAct:P29375 STRING:P29375 PhosphoSite:P29375
DMDM:215274124 PaxDb:P29375 PRIDE:P29375 Ensembl:ENST00000399788
GeneID:5927 KEGG:hsa:5927 UCSC:uc001qif.1 CTD:5927
GeneCards:GC12M000389 H-InvDB:HIX0010308 HGNC:HGNC:9886
HPA:HPA006201 MIM:180202 neXtProt:NX_P29375 PharmGKB:PA34250
HOGENOM:HOG000290719 OMA:ECSKPRE OrthoDB:EOG4GB758 ChiTaRS:KDM5A
EvolutionaryTrace:P29375 GenomeRNAi:5927 NextBio:23088
ArrayExpress:P29375 Bgee:P29375 CleanEx:HS_JARID1A CleanEx:HS_RBP2
Genevestigator:P29375 GermOnline:ENSG00000073614 Uniprot:P29375
Length = 1690
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S +L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGS-LLKSHYERILYPYE 170
>UNIPROTKB|F1MQ59 [details] [associations]
symbol:KDM5A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0016706 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001606 InterPro:IPR001965 InterPro:IPR003347
InterPro:IPR004198 InterPro:IPR013637 InterPro:IPR019787
Pfam:PF00628 Pfam:PF01388 Pfam:PF02373 Pfam:PF02928 Pfam:PF08429
PROSITE:PS50016 PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249
SMART:SM00501 SMART:SM00558 GO:GO:0005737 GO:GO:0045893
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003682
GO:GO:0016706 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774 GO:GO:0019907
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
GeneTree:ENSGT00530000063118 OMA:ECSKPRE EMBL:DAAA02014587
IPI:IPI00715082 Ensembl:ENSBTAT00000027280 Uniprot:F1MQ59
Length = 1693
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S +L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGS-LLKSHYERILYPYE 170
>RGD|1305429 [details] [associations]
symbol:Kdm5a "lysine (K)-specific demethylase 5A" species:10116
"Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=ISO]
InterPro:IPR001606 InterPro:IPR001965 InterPro:IPR003347
InterPro:IPR004198 InterPro:IPR013637 InterPro:IPR019787
Pfam:PF00628 Pfam:PF01388 Pfam:PF02373 Pfam:PF02928 Pfam:PF08429
PROSITE:PS50016 PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249
SMART:SM00501 SMART:SM00558 RGD:1305429 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016706 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.150.60
SUPFAM:SSF46774 InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375
SMART:SM00545 HOGENOM:HOG000290719 HOVERGEN:HBG068574
IPI:IPI00781814 EMBL:BC099835 UniGene:Rn.206273 UniGene:Rn.224608
ProteinModelPortal:Q499M6 UCSC:RGD:1305429 InParanoid:Q499M6
Genevestigator:Q499M6 Uniprot:Q499M6
Length = 1099
Score = 149 (57.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEIVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S +L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGS-LLKSHYERILYPYE 170
>UNIPROTKB|E9PSW7 [details] [associations]
symbol:Jarid1a "Protein Jarid1a" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016706 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen,
2-oxoglutarate as one donor, and incorporation of one atom each of
oxygen into both donors" evidence=IEA] InterPro:IPR001606
InterPro:IPR001965 InterPro:IPR003347 InterPro:IPR004198
InterPro:IPR013637 InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388
Pfam:PF02373 Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016
PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249 SMART:SM00501
SMART:SM00558 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0016706 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
GeneTree:ENSGT00530000063118 IPI:IPI00781814
Ensembl:ENSRNOT00000056198 OMA:IRTRTRN ArrayExpress:E9PSW7
Uniprot:E9PSW7
Length = 1099
Score = 149 (57.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEIVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S +L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGS-LLKSHYERILYPYE 170
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 134 (52.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS P + K +GE W NLS E++ Y N K
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEGA 295
KE+Y +++ +YK + K +GA
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKGA 172
Score = 124 (48.7 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 121 (47.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKD 272
P+ PK +GY F E+ ++++ +P+ E TKM+G W+ L P E++ Y + ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 273 KERYNRELKEYKE 285
K++Y +EL+ Y++
Sbjct: 127 KQQYMKELRAYQQ 139
>MGI|MGI:2136980 [details] [associations]
symbol:Kdm5a "lysine (K)-specific demethylase 5A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016702 "oxidoreductase
activity, acting on single donors with incorporation of molecular
oxygen, incorporation of two atoms of oxygen" evidence=IEA]
[GO:0016706 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001606 InterPro:IPR001965
InterPro:IPR003347 InterPro:IPR004198 InterPro:IPR013637
InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388 Pfam:PF02373
Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016 PROSITE:PS51011
PROSITE:PS51184 SMART:SM00249 SMART:SM00501 SMART:SM00558
MGI:MGI:2136980 GO:GO:0007275 GO:GO:0005737 GO:GO:0045893
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003682 GO:GO:0016568 GO:GO:0016706
GO:GO:0016702 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774 GO:GO:0019907
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
eggNOG:NOG327026 GeneTree:ENSGT00530000063118 KO:K11446 CTD:5927
HOGENOM:HOG000290719 OMA:ECSKPRE ChiTaRS:KDM5A EMBL:AC155720
EMBL:AC078896 EMBL:AK135085 EMBL:AK144877 EMBL:AK166055
EMBL:BC080691 IPI:IPI00849089 RefSeq:NP_666109.2 UniGene:Mm.404761
UniGene:Mm.463658 ProteinModelPortal:Q3UXZ9 SMR:Q3UXZ9
IntAct:Q3UXZ9 STRING:Q3UXZ9 PhosphoSite:Q3UXZ9 PaxDb:Q3UXZ9
PRIDE:Q3UXZ9 Ensembl:ENSMUST00000100996 GeneID:214899
KEGG:mmu:214899 UCSC:uc009dne.2 InParanoid:Q3UXZ9 NextBio:374501
Bgee:Q3UXZ9 CleanEx:MM_RBP2 Genevestigator:Q3UXZ9 Uniprot:Q3UXZ9
Length = 1690
Score = 149 (57.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEIVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S +L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGS-LLKSHYERILYPYE 170
>UNIPROTKB|E9PSM3 [details] [associations]
symbol:Jarid1a "Protein Jarid1a" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016706 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen,
2-oxoglutarate as one donor, and incorporation of one atom each of
oxygen into both donors" evidence=IEA] InterPro:IPR001606
InterPro:IPR001965 InterPro:IPR003347 InterPro:IPR004198
InterPro:IPR013637 InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388
Pfam:PF02373 Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016
PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249 SMART:SM00501
SMART:SM00558 GO:GO:0005737 GO:GO:0045893 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0016706
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.150.60 SUPFAM:SSF46774 GO:GO:0019907 InterPro:IPR003349
PROSITE:PS51183 Pfam:PF02375 SMART:SM00545 IPI:IPI00365351
Ensembl:ENSRNOT00000034548 NextBio:665124 ArrayExpress:E9PSM3
Uniprot:E9PSM3
Length = 1690
Score = 149 (57.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEIVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S +L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGS-LLKSHYERILYPYE 170
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 132 (51.5 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NLS E++ Y K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYMTKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
KE+Y +++ +YK + K +G
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKG 171
Score = 125 (49.1 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 119 (46.9 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
>UNIPROTKB|H3BQ92 [details] [associations]
symbol:ARID3B "AT-rich interactive domain-containing
protein 3B" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC100835
HGNC:HGNC:14350 Ensembl:ENST00000566147 Bgee:H3BQ92 Uniprot:H3BQ92
Length = 138
Score = 118 (46.6 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 62 LDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
LDL++LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 6 LDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 62
>UNIPROTKB|Q4H0T5 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:122765 "Trachypithecus cristatus" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 HOVERGEN:HBG106674 GO:GO:0070363
EMBL:AJ830015 ProteinModelPortal:Q4H0T5 PRIDE:Q4H0T5 Uniprot:Q4H0T5
Length = 246
Score = 126 (49.4 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK RS YN + AEK + K P +E K + E+W NLS E+++Y + +D+ RY
Sbjct: 155 PKRPRSAYNVYVAEKFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIRLAKEDEIRY 211
Query: 277 NRELKEYKERL 287
+ E+K ++E++
Sbjct: 212 HNEMKSWEEQM 222
Score = 43 (20.2 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 113 LLYHYEQVHFFKMQGPPCVPSALRAGLAWLLWNIP 147
L + EQ+ FK + P P+ L +A L +P
Sbjct: 58 LRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 130 (50.8 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NLS E++ Y K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
KE+Y +++ +YK + K +G
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKG 171
Score = 125 (49.1 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|E1BGZ3 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 OMA:NGIMYTG InterPro:IPR023334
PROSITE:PS51486 EMBL:DAAA02020237 EMBL:DAAA02020238
EMBL:DAAA02020239 IPI:IPI00696235 UniGene:Bt.45437
ProteinModelPortal:E1BGZ3 Ensembl:ENSBTAT00000011354
NextBio:20869863 Uniprot:E1BGZ3
Length = 590
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 247 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 306
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 307 PTSITSAAFTLRTQYMKYLYPYE 329
>UNIPROTKB|Q99856 [details] [associations]
symbol:ARID3A "AT-rich interactive domain-containing
protein 3A" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0045121 "membrane raft" evidence=IDA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0045121
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:U88047 EMBL:AF039850
EMBL:AF039844 EMBL:AF039845 EMBL:AF039846 EMBL:AF039847
EMBL:AF039848 EMBL:AF039849 EMBL:AY152547 EMBL:AY845638
EMBL:AC005391 EMBL:AC005379 EMBL:BC033163 EMBL:BC060828
IPI:IPI00018500 RefSeq:NP_005215.1 UniGene:Hs.501296 PDB:2KK0
PDBsum:2KK0 ProteinModelPortal:Q99856 SMR:Q99856 STRING:Q99856
PhosphoSite:Q99856 DMDM:12230034 PaxDb:Q99856 PRIDE:Q99856
DNASU:1820 Ensembl:ENST00000263620 GeneID:1820 KEGG:hsa:1820
UCSC:uc002lql.3 CTD:1820 GeneCards:GC19P000926 HGNC:HGNC:3031
HPA:HPA004793 MIM:603265 neXtProt:NX_Q99856 PharmGKB:PA27485
eggNOG:NOG327790 HOGENOM:HOG000236281 HOVERGEN:HBG050574
InParanoid:Q99856 OMA:NGIMYTG OrthoDB:EOG4Z36GC PhylomeDB:Q99856
EvolutionaryTrace:Q99856 GenomeRNAi:1820 NextBio:7417 Bgee:Q99856
CleanEx:HS_ARID3A Genevestigator:Q99856 GermOnline:ENSG00000116017
InterPro:IPR023334 PROSITE:PS51486 Uniprot:Q99856
Length = 593
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 304 PTSITSAAFTLRTQYMKYLYPYE 326
>UNIPROTKB|F1S6T2 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 OMA:NGIMYTG
InterPro:IPR023334 PROSITE:PS51486 EMBL:FP475994
RefSeq:XP_003354004.1 Ensembl:ENSSSCT00000014658 GeneID:100622803
KEGG:ssc:100622803 Uniprot:F1S6T2
Length = 596
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 248 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 307
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 308 PTSITSAAFTLRTQYMKYLYPYE 330
>MGI|MGI:1328360 [details] [associations]
symbol:Arid3a "AT rich interactive domain 3A (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0045121 "membrane raft" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 MGI:MGI:1328360 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 eggNOG:NOG327790
HOGENOM:HOG000236281 HOVERGEN:HBG050574 OMA:NGIMYTG
OrthoDB:EOG4Z36GC InterPro:IPR023334 PROSITE:PS51486 EMBL:U60335
EMBL:AK141283 EMBL:AK154956 EMBL:BC050925 IPI:IPI00125956
RefSeq:NP_031906.1 UniGene:Mm.301282 ProteinModelPortal:Q62431
SMR:Q62431 STRING:Q62431 PhosphoSite:Q62431 PaxDb:Q62431
PRIDE:Q62431 Ensembl:ENSMUST00000019708 Ensembl:ENSMUST00000105376
Ensembl:ENSMUST00000105377 GeneID:13496 KEGG:mmu:13496
UCSC:uc007gap.1 InParanoid:Q62431 ChiTaRS:ARID3A NextBio:284025
Bgee:Q62431 CleanEx:MM_ARID3A Genevestigator:Q62431
GermOnline:ENSMUSG00000019564 Uniprot:Q62431
Length = 601
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 249 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 308
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 309 PTSITSAAFTLRTQYMKYLYPYE 331
>UNIPROTKB|F1PDC9 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 OMA:NGIMYTG
InterPro:IPR023334 PROSITE:PS51486 EMBL:AAEX03012672
RefSeq:XP_855193.3 Ensembl:ENSCAFT00000031240 GeneID:612370
KEGG:cfa:612370 Uniprot:F1PDC9
Length = 605
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 262 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 321
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 322 PTSITSAAFTLRTQYMKYLYPYE 344
>UNIPROTKB|F1N8B1 [details] [associations]
symbol:LOC100857252 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
Length = 348
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + PK +GY F E+ +L++ P E T+M+G W+ L PEE++ Y + +
Sbjct: 100 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADR 159
Query: 272 DKERYNRELKEYKE 285
DKERY REL++Y++
Sbjct: 160 DKERYMRELEQYQK 173
>UNIPROTKB|Q5ZKF4 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
Uniprot:Q5ZKF4
Length = 348
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + PK +GY F E+ +L++ P E T+M+G W+ L PEE++ Y + +
Sbjct: 100 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADR 159
Query: 272 DKERYNRELKEYKE 285
DKERY REL++Y++
Sbjct: 160 DKERYMRELEQYQK 173
>UNIPROTKB|E1BI80 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 CTD:10620 OMA:LFSMARQ
EMBL:DAAA02052500 EMBL:DAAA02052501 EMBL:DAAA02052502
IPI:IPI00706373 RefSeq:NP_001179977.1 UniGene:Bt.24486
ProteinModelPortal:E1BI80 Ensembl:ENSBTAT00000015698 GeneID:532938
KEGG:bta:532938 NextBio:20875853 Uniprot:E1BI80
Length = 553
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 40/112 (35%), Positives = 58/112 (51%)
Query: 10 KGRSVVED--KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHV 66
+GR + D KLY L S + K+ F D L F GT IP++ + LDL++
Sbjct: 196 RGREISRDFAKLYE--LDSDPE-RKE---FLDDLFVFMQKRGTPINRIPIMAKQILDLYM 249
Query: 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 250 LYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 301
>UNIPROTKB|F1NL47 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 EMBL:AADN02051006
EMBL:AADN02051007 IPI:IPI00585316 Ensembl:ENSGALT00000002097
OMA:IRINGRX Uniprot:F1NL47
Length = 559
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 40/112 (35%), Positives = 58/112 (51%)
Query: 10 KGRSVVED--KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHV 66
+GR + D KLY L S + K+ F D L F GT IP++ + LDL++
Sbjct: 206 RGREISRDFAKLYE--LDSDPE-RKE---FLDDLFIFMQKRGTPINRIPIMAKQILDLYM 259
Query: 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 260 LYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 311
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 126 (49.4 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NL+ E++ Y K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
KE+Y +++ +YK + K +G
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKG 171
Score = 124 (48.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 127 (49.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP PK SG F +E H K+KS +P R+ K +GE W NLS E++ Y N K
Sbjct: 88 DPKAPKRLPSGCLLFCSEFHPKIKSTHPGISIRDVAKKLGEMWNNLSDSEKQPYINKAAK 147
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
K +Y ++ ++K R K +G
Sbjct: 148 LK-KYEKDAADHKSRGKFDGTKG 169
Score = 106 (42.4 bits), Expect = 0.00098, P = 0.00098
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK Y FF E+H K S P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMCAYAFFVQMCREEHKKKNSEVPVNFAEFSKKCSERWKTMSRKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
K Y++E+K+Y
Sbjct: 65 KAYKMHYDQEMKDY 78
>UNIPROTKB|G3MWU0 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:DAAA02023880 Ensembl:ENSBTAT00000064321 Uniprot:G3MWU0
Length = 385
Score = 135 (52.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 124 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 183
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 184 PTTITSAAFTLRTQYMKYLYPYE 206
>UNIPROTKB|I3L5S4 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:CU928717 Ensembl:ENSSSCT00000025460 Uniprot:I3L5S4
Length = 386
Score = 135 (52.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 121 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 180
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 181 PTTITSAAFTLRTQYMKYLYPYE 203
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP PK + S Y FF E +++ P + K++GE W L+ E++ Y+N
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEA 74
Query: 272 DKERYNRELKEYKER 286
DK+RY +E EY ++
Sbjct: 75 DKKRYEKEKAEYAKK 89
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP PK + S Y FF E +++ P + K++GE W L+ E++ Y+N
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEA 74
Query: 272 DKERYNRELKEYKER 286
DK+RY +E EY ++
Sbjct: 75 DKKRYEKEKAEYAKK 89
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 126 (49.4 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NL+ E++ Y K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
KE+Y +++ +YK + K +G
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKG 171
Score = 124 (48.7 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>MGI|MGI:3650624 [details] [associations]
symbol:Arid3c "AT rich interactive domain 3C (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045121 "membrane
raft" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
MGI:MGI:3650624 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0045944 GO:GO:0006351 GO:GO:0003682 GO:GO:0045121
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 HOGENOM:HOG000236281 HOVERGEN:HBG050574
InterPro:IPR023334 PROSITE:PS51486 CTD:138715 OMA:FARRQPV
EMBL:AL807796 EMBL:BC141237 IPI:IPI00556830 RefSeq:NP_001017362.1
UniGene:Mm.425179 ProteinModelPortal:A6PWV5 SMR:A6PWV5
PhosphoSite:A6PWV5 PRIDE:A6PWV5 Ensembl:ENSMUST00000084698
Ensembl:ENSMUST00000171251 GeneID:550619 KEGG:mmu:550619
UCSC:uc008sjj.1 InParanoid:B2RUN0 NextBio:414311 Bgee:A6PWV5
Genevestigator:A6PWV5 Uniprot:A6PWV5
Length = 409
Score = 135 (52.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 116 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 175
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 176 PTTITSAAFTLRTQYMKYLYPYE 198
>RGD|1560943 [details] [associations]
symbol:Arid3c "AT rich interactive domain 3C (BRIGHT-like)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0045121 "membrane raft" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 RGD:1560943
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
OrthoDB:EOG415GF5 CTD:138715 OMA:FARRQPV IPI:IPI00563895
RefSeq:NP_001167452.1 UniGene:Rn.225882 ProteinModelPortal:D3ZQB1
Ensembl:ENSRNOT00000046589 GeneID:502946 KEGG:rno:502946
UCSC:RGD:1560943 NextBio:712863 Uniprot:D3ZQB1
Length = 410
Score = 135 (52.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 117 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 176
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 177 PTTITSAAFTLRTQYMKYLYPYE 199
>UNIPROTKB|E2RGA0 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045121
"membrane raft" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:138715 OMA:FARRQPV EMBL:AAEX03007945 RefSeq:XP_854656.1
ProteinModelPortal:E2RGA0 Ensembl:ENSCAFT00000028460 GeneID:611843
KEGG:cfa:611843 NextBio:20897379 Uniprot:E2RGA0
Length = 411
Score = 135 (52.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 118 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 177
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 178 PTTITSAAFTLRTQYMKYLYPYE 200
>UNIPROTKB|A6NKF2 [details] [associations]
symbol:ARID3C "AT-rich interactive domain-containing
protein 3C" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0045121
"membrane raft" evidence=IDA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0045944 GO:GO:0006351 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774 eggNOG:NOG327790
HOGENOM:HOG000236281 HOVERGEN:HBG050574 InterPro:IPR023334
PROSITE:PS51486 OrthoDB:EOG415GF5 EMBL:AL450283 IPI:IPI00062225
RefSeq:NP_001017363.1 UniGene:Hs.534549 ProteinModelPortal:A6NKF2
SMR:A6NKF2 STRING:A6NKF2 PhosphoSite:A6NKF2 PaxDb:A6NKF2
PRIDE:A6NKF2 DNASU:138715 Ensembl:ENST00000378909 GeneID:138715
KEGG:hsa:138715 UCSC:uc011lon.2 CTD:138715 GeneCards:GC09M034621
HGNC:HGNC:21209 neXtProt:NX_A6NKF2 PharmGKB:PA134928507
InParanoid:A6NKF2 OMA:FARRQPV GenomeRNAi:138715 NextBio:83815
Bgee:A6NKF2 CleanEx:HS_ARID3C Genevestigator:A6NKF2 Uniprot:A6NKF2
Length = 412
Score = 135 (52.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 119 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 178
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 179 PTTITSAAFTLRTQYMKYLYPYE 201
>UNIPROTKB|F1MGP2 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:138715 OMA:FARRQPV EMBL:DAAA02023880 IPI:IPI00842301
RefSeq:XP_002689857.1 RefSeq:XP_600416.3 ProteinModelPortal:F1MGP2
Ensembl:ENSBTAT00000036468 GeneID:522142 KEGG:bta:522142
NextBio:20873455 Uniprot:F1MGP2
Length = 415
Score = 135 (52.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 124 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 183
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 184 PTTITSAAFTLRTQYMKYLYPYE 206
>UNIPROTKB|F1SEC1 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
OMA:FARRQPV EMBL:CU928717 RefSeq:XP_003130719.1 UniGene:Ssc.88977
Ensembl:ENSSSCT00000012008 GeneID:100524334 KEGG:ssc:100524334
Uniprot:F1SEC1
Length = 416
Score = 135 (52.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 121 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 180
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 181 PTTITSAAFTLRTQYMKYLYPYE 203
>FB|FBgn0011764 [details] [associations]
symbol:Dsp1 "Dorsal switch protein 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0032502 "developmental process" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
remodeling" evidence=IMP] [GO:0007379 "segment specification"
evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
"negative regulation of antimicrobial humoral response"
evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
Length = 393
Score = 134 (52.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK + S + +F ++ K+K+L P + K +G W+++ PE ++ Y+++ +
Sbjct: 267 DPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAER 326
Query: 272 DKERYNRELKEYKERLKL 289
DK RY RE+ EYK K+
Sbjct: 327 DKARYEREMTEYKTSGKI 344
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 113 (44.8 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
>UNIPROTKB|D4A2L7 [details] [associations]
symbol:D4A2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
Length = 135
Score = 113 (44.8 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 126 (49.4 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K+KS P + K +GE W NL+ E++ Y K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
KE+Y +++ +YK + K +G
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKG 171
Score = 124 (48.7 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K+Y
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|Q5D144 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
chain complex assembly" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
Length = 246
Score = 125 (49.1 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK RS YN F AE+ + K P++ + K I E+W NLS +++VY + DK RY
Sbjct: 155 PKRPRSAYNIFIAERFQEAKD-GPSQVK--LKTINENWKNLSSSQKQVYIQLAEDDKVRY 211
Query: 277 NRELKEYKERL 287
E+K ++E++
Sbjct: 212 YNEMKSWEEQM 222
Score = 38 (18.4 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 118 EQVHFFKMQGPPCVPSALRAGLAWLLWNIP 147
EQ+ FK Q P S L +A L +P
Sbjct: 63 EQLPIFKAQNPDAKNSELIKKIAELWRELP 92
>MGI|MGI:1914117 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
"negative regulation of neuron differentiation" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
Length = 346
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + PK +GY F E+ +L++ P E T+M+G W+ L PEE++ Y + +
Sbjct: 98 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 157
Query: 272 DKERYNRELKEYKE 285
DKERY +EL++Y++
Sbjct: 158 DKERYMKELEQYQK 171
>UNIPROTKB|Q0VCL5 [details] [associations]
symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
Length = 347
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + PK +GY F E+ +L++ P E T+M+G W+ L PEE++ Y + +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 272 DKERYNRELKEYKE 285
DKERY +EL++Y++
Sbjct: 159 DKERYMKELEQYQK 172
>UNIPROTKB|E2RKW6 [details] [associations]
symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
NextBio:20861223 Uniprot:E2RKW6
Length = 347
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + PK +GY F E+ +L++ P E T+M+G W+ L PEE++ Y + +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 272 DKERYNRELKEYKE 285
DKERY +EL++Y++
Sbjct: 159 DKERYMKELEQYQK 172
>UNIPROTKB|Q9NP66 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
Length = 347
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + PK +GY F E+ +L++ P E T+M+G W+ L PEE++ Y + +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 272 DKERYNRELKEYKE 285
DKERY +EL++Y++
Sbjct: 159 DKERYMKELEQYQK 172
>UNIPROTKB|E2RFI5 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:10620 OMA:LFSMARQ EMBL:AAEX03016311 RefSeq:XP_544771.2
ProteinModelPortal:E2RFI5 Ensembl:ENSCAFT00000028463 GeneID:487646
KEGG:cfa:487646 Uniprot:E2RFI5
Length = 560
Score = 134 (52.2 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 38/112 (33%), Positives = 55/112 (49%)
Query: 10 KGRSVVED--KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHV 66
+GR + D KLY D + F D L F GT IP++ + LDL++
Sbjct: 199 RGREISRDFAKLYEL------DGDPERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYM 252
Query: 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 253 LYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 304
>RGD|1306335 [details] [associations]
symbol:Arid3b "AT rich interactive domain 3B (Bright like)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
RGD:1306335 GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60
SUPFAM:SSF46774 InterPro:IPR023334 PROSITE:PS51486 IPI:IPI00370524
Ensembl:ENSRNOT00000026736 UCSC:RGD:1306335 ArrayExpress:D4A102
Uniprot:D4A102
Length = 560
Score = 134 (52.2 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 38/112 (33%), Positives = 55/112 (49%)
Query: 10 KGRSVVED--KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHV 66
+GR + D KLY D + F D L F GT IP++ + LDL++
Sbjct: 190 RGREISRDFAKLYEL------DGDPERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYM 243
Query: 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 244 LYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 295
>UNIPROTKB|Q8IVW6 [details] [associations]
symbol:ARID3B "AT-rich interactive domain-containing
protein 3B" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.150.60
SUPFAM:SSF46774 eggNOG:NOG327790 HOGENOM:HOG000236281
InterPro:IPR023334 PROSITE:PS51486 EMBL:AF116846 EMBL:AB208830
EMBL:AC100835 EMBL:BC041792 IPI:IPI00328266 IPI:IPI00793438
IPI:IPI00853367 RefSeq:NP_006456.1 UniGene:Hs.655532 HSSP:Q24573
ProteinModelPortal:Q8IVW6 SMR:Q8IVW6 STRING:Q8IVW6
PhosphoSite:Q8IVW6 DMDM:152013359 PaxDb:Q8IVW6 PRIDE:Q8IVW6
Ensembl:ENST00000346246 GeneID:10620 KEGG:hsa:10620 UCSC:uc002ayc.3
UCSC:uc002ayd.3 UCSC:uc002aye.3 CTD:10620 GeneCards:GC15P074833
HGNC:HGNC:14350 MIM:612457 neXtProt:NX_Q8IVW6 PharmGKB:PA134896829
HOVERGEN:HBG103680 InParanoid:Q8IVW6 OMA:LFSMARQ GenomeRNAi:10620
NextBio:40352 ArrayExpress:Q8IVW6 Bgee:Q8IVW6 CleanEx:HS_ARID3B
Genevestigator:Q8IVW6 Uniprot:Q8IVW6
Length = 561
Score = 134 (52.2 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 38/112 (33%), Positives = 55/112 (49%)
Query: 10 KGRSVVED--KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHV 66
+GR + D KLY D + F D L F GT IP++ + LDL++
Sbjct: 198 RGREISRDFAKLYEL------DGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYM 251
Query: 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 252 LYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 303
>MGI|MGI:1930768 [details] [associations]
symbol:Arid3b "AT rich interactive domain 3B (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 MGI:MGI:1930768 GO:GO:0007275
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 HOGENOM:HOG000236281 InterPro:IPR023334
PROSITE:PS51486 HSSP:Q24573 CTD:10620 HOVERGEN:HBG103680
OMA:LFSMARQ EMBL:AF116847 EMBL:AK139455 EMBL:BC049776
IPI:IPI00275919 IPI:IPI00277032 IPI:IPI00652493 RefSeq:NP_062663.1
UniGene:Mm.425588 ProteinModelPortal:Q9Z1N7 SMR:Q9Z1N7
IntAct:Q9Z1N7 STRING:Q9Z1N7 PhosphoSite:Q9Z1N7 PRIDE:Q9Z1N7
Ensembl:ENSMUST00000004780 Ensembl:ENSMUST00000164035
Ensembl:ENSMUST00000171444 GeneID:56380 KEGG:mmu:56380
UCSC:uc009pvt.1 UCSC:uc009pvw.1 InParanoid:Q9Z1N7 OrthoDB:EOG415GF5
NextBio:312460 Bgee:Q9Z1N7 CleanEx:MM_ARID3B Genevestigator:Q9Z1N7
Uniprot:Q9Z1N7
Length = 568
Score = 134 (52.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 38/112 (33%), Positives = 55/112 (49%)
Query: 10 KGRSVVED--KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHV 66
+GR + D KLY D + F D L F GT IP++ + LDL++
Sbjct: 196 RGREISRDFAKLYEL------DGDPERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYM 249
Query: 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 250 LYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 301
>FB|FBgn0042085 [details] [associations]
symbol:Bap170 "Brahma associated protein 170kD" species:7227
"Drosophila melanogaster" [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006911 "phagocytosis, engulfment"
evidence=IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0007480 "imaginal disc-derived leg morphogenesis"
evidence=IGI;IMP] [GO:0031936 "negative regulation of chromatin
silencing" evidence=IGI] [GO:0050821 "protein stabilization"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0008586 "imaginal disc-derived
wing vein morphogenesis" evidence=IMP] [GO:0042059 "negative
regulation of epidermal growth factor receptor signaling pathway"
evidence=IGI] InterPro:IPR001606 InterPro:IPR003150
InterPro:IPR015880 Pfam:PF01388 PROSITE:PS51011 PROSITE:PS51526
SMART:SM00355 EMBL:AE013599 GO:GO:0050821 GO:GO:0006911
GO:GO:0003677 GO:GO:0008586 GO:GO:0008270 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0031936 GO:GO:0005700 GO:GO:0007480
GO:GO:0042059 Gene3D:1.10.150.60 SUPFAM:SSF46774 eggNOG:NOG311317
KO:K11765 GO:GO:0008587 GO:GO:0035060 GeneTree:ENSGT00390000016138
RefSeq:NP_610216.1 ProteinModelPortal:A1Z6M0 SMR:A1Z6M0
STRING:A1Z6M0 PaxDb:A1Z6M0 PRIDE:A1Z6M0 EnsemblMetazoa:FBtr0086107
GeneID:35560 KEGG:dme:Dmel_CG3274 UCSC:CG3274-RA CTD:35560
FlyBase:FBgn0042085 InParanoid:A1Z6M0 OMA:HAIKRHA OrthoDB:EOG4HDR8G
PhylomeDB:A1Z6M0 GenomeRNAi:35560 NextBio:794035 Bgee:A1Z6M0
Uniprot:A1Z6M0
Length = 1688
Score = 139 (54.0 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 39/121 (32%), Positives = 56/121 (46%)
Query: 5 SAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPV-IGGKELD 63
+A T R+ +L P E P FW L++FH GT P I GK +D
Sbjct: 37 AAPATPLRAKNPAQLQIMPEKVEEMPPSPPEEFWRDLQQFHERRGTPLTQPARISGKHVD 96
Query: 64 LHVLYVEATTRGGYEKVVAEKKWREV-GAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHF 122
L+ LY E T RGG+ KV +W EV A+ + + ++ Y L YE+++F
Sbjct: 97 LYKLYNEVTERGGFNKVTMRDEWDEVYSAMETLRERCVNGTASIKHIYRRYLDKYERLNF 156
Query: 123 F 123
F
Sbjct: 157 F 157
>RGD|1564760 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
Uniprot:D3Z9E3
Length = 376
Score = 131 (51.2 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + PK +GY F E+ +L++ P E T+M+G W+ L PEE++ Y + +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 272 DKERYNRELKEYKE 285
DKERY +EL++Y++
Sbjct: 159 DKERYMKELEQYQK 172
>ZFIN|ZDB-GENE-070209-182 [details] [associations]
symbol:arid3b "AT rich interactive domain 3B
(Bright like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 ZFIN:ZDB-GENE-070209-182
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 eggNOG:NOG327790 HOGENOM:HOG000236281
InterPro:IPR023334 PROSITE:PS51486 CTD:10620 OrthoDB:EOG415GF5
EMBL:CR376821 EMBL:CU181885 EMBL:FP017193 EMBL:BC131867
IPI:IPI00915616 RefSeq:NP_001076471.1 UniGene:Dr.150509 SMR:A2RRV2
Ensembl:ENSDART00000103470 GeneID:571249 KEGG:dre:571249
HOVERGEN:HBG095882 InParanoid:A2RRV2 OMA:NANTREE NextBio:20890475
Uniprot:A2RRV2
Length = 537
Score = 133 (51.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L + GT IP++ + LDL++LY T +GG +V+ +K WRE+
Sbjct: 197 FLDDLFAYMQKRGTPVNRIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNL 256
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 257 PTSITSAAFTLRTQYMKYLYPYE 279
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 110 (43.8 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S Y FF E ++S P+ + K +GE W L+PEE++ Y+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQA 76
Query: 272 DKERYNRELKEYKERL 287
DK+RY E + Y L
Sbjct: 77 DKKRYESEKELYNATL 92
>MGI|MGI:107810 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0006391 "transcription initiation from
mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=ISO] InterPro:IPR009071
EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
Length = 243
Score = 126 (49.4 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK RS YN + +E + K + + K++ E+W NLSPEE++ Y + D+ RY
Sbjct: 154 PKRPRSAYNIYVSESFQEAKD---DSAQGKLKLVNEAWKNLSPEEKQAYIQLAKDDRIRY 210
Query: 277 NRELKEYKERL 287
+ E+K ++E++
Sbjct: 211 DNEMKSWEEQM 221
>UNIPROTKB|I3L967 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 EMBL:CU469022 EMBL:CU638715
Ensembl:ENSSSCT00000023820 OMA:MNIRISG Uniprot:I3L967
Length = 336
Score = 129 (50.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP++ + LDL++LY T +GG +++ +K WRE+ + TSA+F LR Y+
Sbjct: 11 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 70
Query: 114 LYHYE 118
LY YE
Sbjct: 71 LYAYE 75
>UNIPROTKB|F5H322 [details] [associations]
symbol:KDM5A "Lysine-specific demethylase 5A" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60
SUPFAM:SSF46774 EMBL:AC005844 EMBL:AC007406 HGNC:HGNC:9886
ChiTaRS:KDM5A IPI:IPI01011106 ProteinModelPortal:F5H322 SMR:F5H322
Ensembl:ENST00000536014 ArrayExpress:F5H322 Bgee:F5H322
Uniprot:F5H322
Length = 123
Score = 109 (43.4 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 58 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKE 117
Query: 84 KKWREV 89
KKW +V
Sbjct: 118 KKWSKV 123
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 121 (47.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K+ +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE Y +++ Y+ + K G+
Sbjct: 151 LKEEYEKDIAAYRAKGKSEVGK 172
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKD 272
P+ PK +GY F E+ ++++ +P+ E TKM+G W+ L P E++ Y + ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 273 KERYNRELKEYKE 285
K++Y +EL+ Y++
Sbjct: 127 KQQYMKELRAYQQ 139
>UNIPROTKB|F1NAK8 [details] [associations]
symbol:LOC100858693 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0045121
"membrane raft" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
EMBL:AADN02068975 EMBL:AADN02068976 IPI:IPI00651600
Ensembl:ENSGALT00000009379 OMA:RQTFGTA Uniprot:F1NAK8
Length = 368
Score = 126 (49.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 32/93 (34%), Positives = 48/93 (51%)
Query: 29 DVSKDPI--VFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKK 85
++ +DP F D L F GT IP++ + LDL+ LY T +GG +V+ +K
Sbjct: 85 ELDEDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYRLVTDKGGLVEVINKKI 144
Query: 86 WREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
WRE+ + TSA+ +R Y+ LY YE
Sbjct: 145 WREITKGLNLPTSITSAALTVRTQYMKYLYPYE 177
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 118 (46.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y FF E+H K P EF+K E W +S +E+ + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 270 LKDKERYNRELKEY 283
DK Y++E+K+Y
Sbjct: 65 KADKVHYDQEIKDY 78
Score = 111 (44.1 bits), Expect = 0.00018, P = 0.00018
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ F +E K KS P + K +GE W NL+ E++ Y K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAK 147
Query: 272 DKERYNRELKEYKERLKLRQGEG 294
KE+Y +++ YK + K +G
Sbjct: 148 LKEKYEKDVAVYKSKGKSDGAKG 170
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEVGK 172
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEVGK 172
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 109 (43.4 bits), Expect = 0.00052, P = 0.00052
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEAGK 172
>UNIPROTKB|Q5T7C6 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
Ensembl:ENST00000426225 Uniprot:Q5T7C6
Length = 162
Score = 113 (44.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE WTN + ++++ Y+ + K
Sbjct: 91 DPNAPKTPPSAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAADDKQPYEKMAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|F1NN75 [details] [associations]
symbol:KDM5A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016706
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0019907 "cyclin-dependent
protein kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
InterPro:IPR001606 InterPro:IPR001965 InterPro:IPR003347
InterPro:IPR004198 InterPro:IPR013637 InterPro:IPR019787
Pfam:PF00628 Pfam:PF01388 Pfam:PF02373 Pfam:PF02928 Pfam:PF08429
PROSITE:PS50016 PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249
SMART:SM00501 SMART:SM00558 GO:GO:0005737 GO:GO:0045893
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003682
GO:GO:0016706 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774 GO:GO:0019907
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
GeneTree:ENSGT00530000063118 OMA:ECSKPRE EMBL:AADN02006480
IPI:IPI00571489 Ensembl:ENSGALT00000021199 Uniprot:F1NN75
Length = 1696
Score = 140 (54.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L +GG+E V E
Sbjct: 81 LNELEAMTRVKLDFLDQLAKFWELQGSNLKIPVVERKILDLYGLSKIVAGKGGFEVVTKE 140
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +V + + P + S +L+ HY +LY YE
Sbjct: 141 KKWSKVASRLGYLPGKGTGS-LLKSHYERILYPYE 174
Score = 37 (18.1 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 160 KLGSETLSGVLYHPDHPGPSTSFCQS 185
K+ S L +PD G TSF QS
Sbjct: 1298 KIISAELQKAAANPDLQGHLTSFQQS 1323
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 119 (46.9 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEAGK 172
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 119 (46.9 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEAGK 172
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 119 (46.9 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEAGK 172
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 119 (46.9 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKGKGEAGK 172
>ZFIN|ZDB-GENE-070112-1882 [details] [associations]
symbol:zgc:158706 "zgc:158706" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 ZFIN:ZDB-GENE-070112-1882 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00510000046413
EMBL:CR925751 IPI:IPI00608314 Ensembl:ENSDART00000142431
Bgee:F1QH68 Uniprot:F1QH68
Length = 606
Score = 123 (48.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K++D+ ++Y GGY++V ++ W++V + +P +TSA+ R+HY L
Sbjct: 44 IPHLGFKQIDMFLMYKTVKELGGYQQVTTQQLWKKVYNILGGNPRSTSAATCTRRHYEKL 103
Query: 114 LYHYE 118
L YE
Sbjct: 104 LLPYE 108
Score = 45 (20.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQN--IGL 270
+P +P+ N F HY +RER+ K + ++ +P + V+++ +GL
Sbjct: 333 NPVPRRPSPPSVNLFNRRPHYSEAVTMKSRERDLHKDWVKEESSGAPAPKLVHRSNPLGL 392
Query: 271 KDKE-RYNRELK 281
E N E++
Sbjct: 393 PIPESNSNMEIQ 404
Score = 42 (19.8 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 259 PEERKVYQNIGLKDKERYNRELKEYKERLKL 289
P + K+ Q +K++E N L Y E L
Sbjct: 525 PSQPKLVQVPVIKNQESMNHRLHSYSEESPL 555
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 103 (41.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S Y FF E ++S P+ + +++GE W L+ EE++ Y++
Sbjct: 23 DPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQA 82
Query: 272 DKERYNRELKEY 283
DK+RY E + Y
Sbjct: 83 DKKRYESEKELY 94
>UNIPROTKB|E1BA21 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0070363 "mitochondrial light strand
promoter sense binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
"mitochondrial respiratory chain complex assembly" evidence=IEA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0042645 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391
IPI:IPI00707168 UniGene:Bt.102328 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:DAAA02062260 EMBL:DAAA02062261
Ensembl:ENSBTAT00000052511 Uniprot:E1BA21
Length = 246
Score = 117 (46.2 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK RS YN F AE+ + + + K I E+W NLS +++VY + DK RY
Sbjct: 155 PKRPRSAYNIFIAERFQEARD---GTSQVKLKAINENWKNLSNSQKQVYIQLAKDDKIRY 211
Query: 277 NRELKEYKERL 287
E+K ++E++
Sbjct: 212 YNEMKSWEEQM 222
Score = 38 (18.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 118 EQVHFFKMQGPPCVPSALRAGLAWLLWNIP 147
EQ+ FK Q P S L +A L +P
Sbjct: 63 EQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>UNIPROTKB|Q0II87 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0006391 "transcription
initiation from mitochondrial promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 EMBL:BC122754 IPI:IPI00707168
RefSeq:NP_001029188.2 UniGene:Bt.102328 ProteinModelPortal:Q0II87
STRING:Q0II87 PRIDE:Q0II87 GeneID:510059 KEGG:bta:510059 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674
InParanoid:Q0II87 KO:K11830 NextBio:20869256 GO:GO:0070363
Uniprot:Q0II87
Length = 246
Score = 117 (46.2 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK RS YN F AE+ + + + K I E+W NLS +++VY + DK RY
Sbjct: 155 PKRPRSAYNIFIAERFQEARD---GTSQVKLKAINENWKNLSNSQKQVYIQLAKDDKIRY 211
Query: 277 NRELKEYKERL 287
E+K ++E++
Sbjct: 212 YNEMKSWEEQM 222
Score = 38 (18.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 118 EQVHFFKMQGPPCVPSALRAGLAWLLWNIP 147
EQ+ FK Q P S L +A L +P
Sbjct: 63 EQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>UNIPROTKB|Q00059 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0033108 "mitochondrial respiratory chain
complex assembly" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IMP;TAS] [GO:0008301 "DNA binding,
bending" evidence=IDA] [GO:0006356 "regulation of transcription
from RNA polymerase I promoter" evidence=TAS] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0005759
"mitochondrial matrix" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0006261 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645 Reactome:REACT_1788
GO:GO:0006356 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830
GO:GO:0070363 EMBL:M62810 EMBL:EU279428 EMBL:BT019658 EMBL:BT019659
EMBL:AK312558 EMBL:AB451241 EMBL:AB451366 EMBL:AC023170
EMBL:BC126366 EMBL:X64269 IPI:IPI00020928 PIR:JC1496
RefSeq:NP_003192.1 UniGene:Hs.594250 PDB:3FGH PDB:3TMM PDB:3TQ6
PDBsum:3FGH PDBsum:3TMM PDBsum:3TQ6 ProteinModelPortal:Q00059
SMR:Q00059 IntAct:Q00059 STRING:Q00059 PhosphoSite:Q00059
DMDM:417324 PaxDb:Q00059 PRIDE:Q00059 DNASU:7019
Ensembl:ENST00000487519 GeneID:7019 KEGG:hsa:7019 UCSC:uc001jkf.3
GeneCards:GC10P060146 HGNC:HGNC:11741 HPA:HPA040648 MIM:600438
neXtProt:NX_Q00059 PharmGKB:PA36458 InParanoid:Q00059 OMA:YENEMKS
OrthoDB:EOG4KKZ4D PhylomeDB:Q00059 ChiTaRS:TFAM
EvolutionaryTrace:Q00059 GenomeRNAi:7019 NextBio:27419
ArrayExpress:Q00059 Bgee:Q00059 CleanEx:HS_TFAM
Genevestigator:Q00059 GermOnline:ENSG00000108064 Uniprot:Q00059
Length = 246
Score = 120 (47.3 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK RS YN + AE+ + K P +E K + E+W NLS E+++Y +D+ RY
Sbjct: 155 PKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRY 211
Query: 277 NRELKEYKERL 287
+ E+K ++E++
Sbjct: 212 HNEMKSWEEQM 222
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 117 (46.2 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP PK S Y +F E+H K EF+K E W +SP+E+ ++++
Sbjct: 5 DPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLA 64
Query: 270 LKDKERYNRELKEYKERLKLRQ 291
+DK RY++E+ Y K R+
Sbjct: 65 KQDKARYDQEMMHYNPGKKGRK 86
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 116 (45.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ FF+E ++KS P + K +GE W NLS ++++Y N K
Sbjct: 86 DPNAPKRPPSGFFLFFSEFCSEIKSTNPGISIGDVAKKLGEMWNNLSDSKKQLYVNKDAK 145
Query: 272 DKERYNRELKEYK 284
K +Y +++ +YK
Sbjct: 146 LK-KYEKDVADYK 157
Score = 115 (45.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 213 DPSYPKPNRSGYNFF--FAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGL 270
DP PK S + FF K +K P EF+K E W +S +E+ + +
Sbjct: 5 DPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAK 64
Query: 271 KDKERYNRELKEY 283
DK YN+E+K+Y
Sbjct: 65 ADKVHYNQEMKDY 77
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 121 (47.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKD 272
P+ PK +GY F E+ ++++ +P+ E TKM+G W+ L P E++ Y + ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126
Query: 273 KERYNRELKEYKE 285
K++Y +EL+ Y++
Sbjct: 127 KQQYMKELRAYQQ 139
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 121 (47.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKD 272
P+ PK +GY F E+ ++++ +P+ E TKM+G W+ L P E++ Y + ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126
Query: 273 KERYNRELKEYKE 285
K++Y +EL+ Y++
Sbjct: 127 KQQYMKELRAYQQ 139
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 121 (47.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKD 272
P+ PK +GY F E+ ++++ +P+ E TKM+G W+ L P E++ Y + ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 273 KERYNRELKEYKE 285
K++Y +EL+ Y++
Sbjct: 127 KQQYMKELRAYQQ 139
>FB|FBgn0031759 [details] [associations]
symbol:lid "little imaginal discs" species:7227 "Drosophila
melanogaster" [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016706 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032453 "histone
demethylase activity (H3-K4 specific)" evidence=IMP] [GO:0043992
"histone acetyltransferase activity (H3-K9 specific)" evidence=IMP]
[GO:0034647 "histone demethylase activity (H3-trimethyl-K4
specific)" evidence=IMP] [GO:0034720 "histone H3-K4 demethylation"
evidence=IMP] [GO:0043970 "histone H3-K9 acetylation" evidence=IMP]
[GO:0070822 "Sin3-type complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0045475 "locomotor rhythm" evidence=IMP] InterPro:IPR001606
InterPro:IPR001965 InterPro:IPR003347 InterPro:IPR004198
InterPro:IPR013637 InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388
Pfam:PF02373 Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016
PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249 SMART:SM00501
SMART:SM00558 GO:GO:0007275 GO:GO:0045893 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016706 GO:GO:0016702 GO:GO:0045475 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.150.60
SUPFAM:SSF46774 GO:GO:0070822 InterPro:IPR003349 PROSITE:PS51183
Pfam:PF02375 SMART:SM00545 eggNOG:NOG327026
GeneTree:ENSGT00530000063118 GO:GO:0034647 KO:K11446 OMA:TEMVERE
EMBL:AY095051 RefSeq:NP_001245908.1 RefSeq:NP_001245909.1
RefSeq:NP_001245910.1 RefSeq:NP_523486.1 RefSeq:NP_723140.1
UniGene:Dm.2779 PDB:2LM1 PDBsum:2LM1 ProteinModelPortal:Q9VMJ7
SMR:Q9VMJ7 DIP:DIP-29330N IntAct:Q9VMJ7 MINT:MINT-1672742
STRING:Q9VMJ7 PaxDb:Q9VMJ7 PRIDE:Q9VMJ7 EnsemblMetazoa:FBtr0079231
EnsemblMetazoa:FBtr0079232 EnsemblMetazoa:FBtr0307069
EnsemblMetazoa:FBtr0307070 EnsemblMetazoa:FBtr0307071 GeneID:33837
KEGG:dme:Dmel_CG9088 CTD:33837 FlyBase:FBgn0031759
InParanoid:Q9VMJ7 OrthoDB:EOG408KPT PhylomeDB:Q9VMJ7
GenomeRNAi:33837 NextBio:785524 Bgee:Q9VMJ7 GO:GO:0043992
Uniprot:Q9VMJ7
Length = 1838
Score = 130 (50.8 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 35/126 (27%), Positives = 63/126 (50%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
DKL P L+ E ++ + F D + +F + G+ IP++ K LDL+ L+
Sbjct: 208 DKLRFVPRVQRLNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQ 267
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVP 132
GG E+ ++KW +V ++ P++ S L+ HY +L+ +E K+ GP P
Sbjct: 268 EEGGMEQTTKDRKWAKVANRMQY-PSSKSVGATLKAHYERILHPFEVYTSGKVLGP--TP 324
Query: 133 SALRAG 138
++ +G
Sbjct: 325 TSSGSG 330
>UNIPROTKB|F1NLS2 [details] [associations]
symbol:TFAM "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 GO:GO:0006391 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:AADN02035299 IPI:IPI00588565
Ensembl:ENSGALT00000041096 ArrayExpress:F1NLS2 Uniprot:F1NLS2
Length = 264
Score = 119 (46.9 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK RSG+N F +E + K L P + K + E+W NLS +++ Y + DK RY
Sbjct: 152 PKRPRSGFNIFVSENFQQSKGLSPTAK---LKQLFETWQNLSSSQKQPYLQLAQDDKVRY 208
Query: 277 NRELKEYKERL 287
E+K ++ ++
Sbjct: 209 QNEMKSWEAKM 219
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 116 (45.9 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKGKSEVGK 172
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 115 (45.5 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K P + K +GE W +S EE++ Y+ K
Sbjct: 90 DPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAK 149
Query: 272 DKERYNRELKEYKERLKLRQGEGA 295
KE+Y +++ Y+ + K+ G GA
Sbjct: 150 LKEKYEKDIAAYRSKGKV--GGGA 171
Score = 109 (43.4 bits), Expect = 0.00048, P = 0.00048
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y +F + K +P EF+K E W +S +E+ ++++
Sbjct: 4 DPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 64 KLDKARYEREMKNY 77
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 113 (44.8 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00022, P = 0.00022
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 114 (45.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K
Sbjct: 80 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 139
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 140 LKEKYEKDIAAYRAKGKSEAGK 161
>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
symbol:hmgb1b "high-mobility group box 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
Length = 165
Score = 110 (43.8 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y +F + K +P EF+K E W +S +E+ ++++
Sbjct: 4 DPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 270 LKDKERYNRELKEY 283
+DK RY RE+K Y
Sbjct: 64 KQDKVRYEREMKNY 77
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE WTN + ++++ Y + K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDKQPYGKMAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
Score = 108 (43.1 bits), Expect = 0.00073, P = 0.00073
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ +++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
>ZFIN|ZDB-GENE-030131-5379 [details] [associations]
symbol:kdm5ba "lysine (K)-specific demethylase
5Ba" species:7955 "Danio rerio" [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016706 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001606 InterPro:IPR001965 InterPro:IPR003347
InterPro:IPR004198 InterPro:IPR013637 InterPro:IPR019787
Pfam:PF00628 Pfam:PF01388 Pfam:PF02373 Pfam:PF02928 Pfam:PF08429
PROSITE:PS50016 PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249
SMART:SM00501 SMART:SM00558 ZFIN:ZDB-GENE-030131-5379 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0016706
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.150.60 SUPFAM:SSF46774 InterPro:IPR003349
PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
GeneTree:ENSGT00530000063118 EMBL:CR628365 IPI:IPI00636517
Ensembl:ENSDART00000058729 ArrayExpress:F1R3Y4 Bgee:F1R3Y4
Uniprot:F1R3Y4
Length = 1483
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 33/105 (31%), Positives = 51/105 (48%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
D+L+ P L+ E ++ + F D + +F + G IP + K LDL VLY
Sbjct: 55 DRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKTLDLFVLYKLVK 114
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG++ V E++W ++ F+P S LR HY +LY Y
Sbjct: 115 EDGGFDVVCKERRWTQIALKMGFAPGKAIGSH-LRAHYERILYPY 158
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 113 (44.8 bits), Expect = 0.00012, P = 0.00012
Identities = 27/82 (32%), Positives = 37/82 (45%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
D PK N S Y F K K PN +EF++ E W ++S E+ Y+ +
Sbjct: 5 DQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64
Query: 270 LKDKERYNRELKEYKERLKLRQ 291
DK RY E+ Y R K R+
Sbjct: 65 KLDKARYQEEMMNYFGRRKKRR 86
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 113 (44.8 bits), Expect = 0.00013, P = 0.00013
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKD 272
P+ PK +GY F E+ ++++ +P+ E TKM+G W+ L P E++ Y + K+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKE 126
Query: 273 KERYNRELKEYKE 285
K++Y +EL Y++
Sbjct: 127 KQQYLKELWAYQQ 139
>UNIPROTKB|G4N2P7 [details] [associations]
symbol:MGG_04878 "Lid2 complex component lid2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001841
InterPro:IPR001606 InterPro:IPR001965 InterPro:IPR003347
InterPro:IPR004198 InterPro:IPR013637 InterPro:IPR019787
Pfam:PF00628 Pfam:PF01388 Pfam:PF02373 Pfam:PF02928 Pfam:PF08429
PROSITE:PS50016 PROSITE:PS51011 PROSITE:PS51184 SMART:SM00184
SMART:SM00249 SMART:SM00501 SMART:SM00558 GO:GO:0005634
EMBL:CM001233 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0016706 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
KO:K11446 RefSeq:XP_003712359.1 EnsemblFungi:MGG_04878T0
GeneID:2675627 KEGG:mgr:MGG_04878 Uniprot:G4N2P7
Length = 1755
Score = 127 (49.8 bits), Expect = 0.00013, P = 0.00013
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+S E ++ + + D L +FH G + +P + K LDL+ L RGG++KV
Sbjct: 153 LNSVEGSTRVNMNYVDALVKFHNQNGKEIRLPYVDKKPLDLYKLKKAVENRGGFDKVCKS 212
Query: 84 KKWREVGAVFKFS-PTTTSASFVLRKHYLTLLYHYEQ 119
KKW E+G +S +S S L+ Y L YE+
Sbjct: 213 KKWAEIGRDLGYSGKIMSSLSTSLKNSYQKFLCPYEE 249
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKD 272
P+ PK +GY F E+ ++++ +P+ E TKM+G W+ L P E++ Y + K+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKE 126
Query: 273 KERYNRELKEYKE 285
K++Y +EL Y++
Sbjct: 127 KQQYLKELWAYQQ 139
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K+ G+
Sbjct: 151 LKEKYEKDIAAYRAKGKVDAGK 172
Score = 109 (43.4 bits), Expect = 0.00055, P = 0.00055
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY +E+K Y
Sbjct: 65 KADKLRYEKEMKNY 78
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K+ G+
Sbjct: 151 LKEKYEKDIAAYRAKGKVDAGK 172
Score = 109 (43.4 bits), Expect = 0.00056, P = 0.00056
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY +E+K Y
Sbjct: 65 KADKLRYEKEMKNY 78
>WB|WBGene00000476 [details] [associations]
symbol:cfi-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0045165 "cell fate commitment" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0005634 GO:GO:0006355
GO:GO:0030182 GO:GO:0003677 GO:GO:0006351 GO:GO:0045165
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 InterPro:IPR023334 PROSITE:PS51486 HSSP:Q24573
EMBL:AF487547 EMBL:Z81128 EMBL:AL023824 EMBL:Z81033 PIR:T25159
RefSeq:NP_492644.2 UniGene:Cel.180 ProteinModelPortal:O02326
SMR:O02326 PaxDb:O02326 EnsemblMetazoa:T23D8.8 GeneID:188793
KEGG:cel:CELE_T23D8.8 UCSC:T23D8.8 CTD:188793 WormBase:T23D8.8
HOGENOM:HOG000017380 InParanoid:O02326 OMA:YDEENTN NextBio:940112
Uniprot:O02326
Length = 467
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 39 DTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPT 98
D L H I IP++ + LDL+ LY GG +++ +K WRE+ +
Sbjct: 190 DWLNFMHRIGKPVTRIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSS 249
Query: 99 TTSASFVLRKHYLTLLYHYE 118
TSA+F LR Y LY YE
Sbjct: 250 ITSAAFTLRTQYQKYLYDYE 269
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00041, P = 0.00041
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00041, P = 0.00041
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIPAYRAKGK 167
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00041, P = 0.00041
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIPAYRAKGK 167
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 109 (43.4 bits), Expect = 0.00055, P = 0.00055
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 108 (43.1 bits), Expect = 0.00073, P = 0.00073
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + +++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|C9JGA3 [details] [associations]
symbol:KDM5D "Lysine-specific demethylase 5D" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001606 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388 PROSITE:PS50016
PROSITE:PS51011 SMART:SM00249 SMART:SM00501 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.150.60
SUPFAM:SSF46774 InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375
SMART:SM00545 EMBL:AC010889 HGNC:HGNC:11115 ChiTaRS:KDM5D
IPI:IPI00644852 ProteinModelPortal:C9JGA3 SMR:C9JGA3 STRING:C9JGA3
Ensembl:ENST00000447300 HOGENOM:HOG000174636 ArrayExpress:C9JGA3
Bgee:C9JGA3 Uniprot:C9JGA3
Length = 425
Score = 119 (46.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + K LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLHYPPGKNIGS-LLRSHYERIIYPYE 165
Score = 38 (18.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 250 IGESWTNLSPEERKVYQNIG 269
+ S NLSPEE++ Y G
Sbjct: 400 VSNSKQNLSPEEKE-YATSG 418
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 110 (43.8 bits), Expect = 0.00019, P = 0.00019
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 56 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 115
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 116 LKEKYEKDIAAYRAKGK 132
>RGD|2319567 [details] [associations]
symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
Uniprot:F1LNG6
Length = 219
Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 133 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 192
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 193 KADKARYEREMKTY 206
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 96 (38.9 bits), Expect = 0.00022, P = 0.00022
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP PK S Y FF E+ ++ P + K++GE W LS ++R Y
Sbjct: 20 DPMAPKRGLSAYMFFANEQRDNVREENPGVTFGQVGKILGERWKALSDKQRAPYDAKAAA 79
Query: 272 DKERYNRELKEYK 284
DK+RY E Y+
Sbjct: 80 DKKRYEDEKAAYQ 92
>FB|FBgn0004795 [details] [associations]
symbol:retn "retained" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=NAS;IMP] [GO:0070491 "repressing transcription
factor binding" evidence=IPI] [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0009880 "embryonic pattern specification" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0007435 "salivary gland morphogenesis"
evidence=NAS] [GO:0042063 "gliogenesis" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0007431 "salivary gland development" evidence=NAS] [GO:0045924
"regulation of female receptivity" evidence=IMP] [GO:0007411 "axon
guidance" evidence=IMP] [GO:0008049 "male courtship behavior"
evidence=IMP] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 EMBL:AE013599 GO:GO:0005634 GO:GO:0007411
GO:GO:0045893 GO:GO:0009952 GO:GO:0007435 GO:GO:0048477
GO:GO:0003700 GO:GO:0006351 GO:GO:0000122 GO:GO:0007517
GO:GO:0045924 GO:GO:0008049 GO:GO:0000976 GO:GO:0009880
GO:GO:0042063 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 eggNOG:NOG327790 InterPro:IPR023334
PROSITE:PS51486 EMBL:U62542 EMBL:AY118955 PIR:JC6093
RefSeq:NP_476864.2 RefSeq:NP_788434.1 UniGene:Dm.20640 PDB:1C20
PDB:1KQQ PDBsum:1C20 PDBsum:1KQQ ProteinModelPortal:Q24573
SMR:Q24573 STRING:Q24573 PaxDb:Q24573 EnsemblMetazoa:FBtr0072073
GeneID:45976 KEGG:dme:Dmel_CG5403 CTD:56729 FlyBase:FBgn0004795
InParanoid:Q24573 OMA:MEYLQLI OrthoDB:EOG4C2FTG PhylomeDB:Q24573
EvolutionaryTrace:Q24573 GenomeRNAi:45976 NextBio:838560
Bgee:Q24573 GermOnline:CG5403 Uniprot:Q24573
Length = 911
Score = 122 (48.0 bits), Expect = 0.00023, P = 0.00023
Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 29 DVSKDPI--VFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKK 85
+++ DP F D L F GT +P++ LDL+ LY RGG V+ +K
Sbjct: 289 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 348
Query: 86 WREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
W+E+ + TSA+F LR Y+ LY YE
Sbjct: 349 WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 381
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLK-SLYPNREREFTKMIGESWTNLSPEERKVYQNIGLK 271
DP P+ S Y FF E+H K + N EF+K E W +S +E+ ++N+ K
Sbjct: 5 DPKKPRGKMSSYTFFGGEEHEKKHPDAFVNF-LEFSKKCSERWKTMSAKEKGEFENMA-K 62
Query: 272 DKERYNRELKEY 283
K R+ RE+K Y
Sbjct: 63 AKARHEREMKTY 74
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 110 (43.8 bits), Expect = 0.00023, P = 0.00023
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIGLKDK 273
PK N S Y F K K PN +EF++ E W ++S E+ Y+ + DK
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 274 ERYNRELKEYKERLKLRQ 291
RY E+ Y + K R+
Sbjct: 69 ARYQEEMMNYVGKRKKRR 86
>UNIPROTKB|F1NAR1 [details] [associations]
symbol:ARID5B "AT-rich interactive domain-containing
protein 5B" species:9031 "Gallus gallus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0001822 "kidney development" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0006807 "nitrogen compound metabolic process" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0008585
"female gonad development" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0010761 "fibroblast
migration" evidence=IEA] [GO:0030325 "adrenal gland development"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045444 "fat cell differentiation"
evidence=IEA] [GO:0048008 "platelet-derived growth factor receptor
signaling pathway" evidence=IEA] [GO:0048468 "cell development"
evidence=IEA] [GO:0048644 "muscle organ morphogenesis"
evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] [GO:0051091 "positive regulation of sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0060021 "palate development" evidence=IEA] [GO:0060325 "face
morphogenesis" evidence=IEA] [GO:0060613 "fat pad development"
evidence=IEA] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 GO:GO:0051091 GO:GO:0005622 GO:GO:0044212
GO:GO:0048008 GO:GO:0003713 GO:GO:0045444 GO:GO:0006807
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00510000046413
GO:GO:0010761 IPI:IPI00580568 OMA:ILPYERF EMBL:AADN02035211
EMBL:AADN02035212 EMBL:AADN02035213 Ensembl:ENSGALT00000004734
Uniprot:F1NAR1
Length = 1092
Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 2 SQSSAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGK 60
S +S K KG S EDK + ++ E+ D F L ++ T IP +G K
Sbjct: 205 SNNSNCK-KGSS--EDK---SKIAVGEECRADEQAFLVALYKYMKERKTPIERIPYLGFK 258
Query: 61 ELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119
+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L+ YE+
Sbjct: 259 QINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 317
>UNIPROTKB|Q5ZJ69 [details] [associations]
symbol:ARID5B "AT-rich interactive domain-containing
protein 5B" species:9031 "Gallus gallus" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051091 "positive regulation of sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0060612 "adipose tissue development" evidence=ISS] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISS]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0051091 GO:GO:0060612 GO:GO:0006351
GO:GO:0044212 Gene3D:1.10.150.60 SUPFAM:SSF46774 HSSP:Q14865
EMBL:AJ720565 IPI:IPI00580568 RefSeq:NP_001026391.1
UniGene:Gga.22372 ProteinModelPortal:Q5ZJ69 SMR:Q5ZJ69
GeneID:423661 KEGG:gga:423661 CTD:84159 eggNOG:NOG115121
HOGENOM:HOG000034051 HOVERGEN:HBG050575 InParanoid:Q5ZJ69
OrthoDB:EOG4N5VW9 NextBio:20826099 Uniprot:Q5ZJ69
Length = 1185
Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 2 SQSSAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGK 60
S +S K KG S EDK + ++ E+ D F L ++ T IP +G K
Sbjct: 298 SNNSNCK-KGSS--EDK---SKIAVGEECRADEQAFLVALYKYMKERKTPIERIPYLGFK 351
Query: 61 ELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119
+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L+ YE+
Sbjct: 352 QINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 410
>RGD|1594733 [details] [associations]
symbol:LOC690521 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
Length = 213
Score = 111 (44.1 bits), Expect = 0.00031, P = 0.00031
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF + K +P+ EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KADKARYEREMKTY 78
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 110 (43.8 bits), Expect = 0.00037, P = 0.00037
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K+ +P + K +GE W+ S ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 272 DKERYNRELKEYKERLKLRQGE 293
KE+Y +++ Y+ + K G+
Sbjct: 151 LKEKYEKDIAAYRAKSKSDAGK 172
Score = 108 (43.1 bits), Expect = 0.00064, P = 0.00064
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y +F + K +P+ EF++ E W +S +E+ ++ +
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KGDKARYDREMKNY 78
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 118 (46.6 bits), Expect = 0.00041, P = 0.00041
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK SG+ FF + +K +P E K++G+ W +S ++++ Y+
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQV 617
Query: 272 DKERYNRELKEYKERLKLRQGEGANS 297
DK+RY E+ +YK + G +S
Sbjct: 618 DKQRYKDEISDYKNPQPMNVDSGNDS 643
>ZFIN|ZDB-GENE-030131-9097 [details] [associations]
symbol:zgc:77151 "zgc:77151" species:7955 "Danio
rerio" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001606 InterPro:IPR017956 Pfam:PF01388
PROSITE:PS51011 SMART:SM00384 SMART:SM00501
ZFIN:ZDB-GENE-030131-9097 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00510000046413
EMBL:BX914201 EMBL:BX649250 EMBL:CU104763 IPI:IPI00994850
Ensembl:ENSDART00000126335 ArrayExpress:F1QKD9 Bgee:F1QKD9
Uniprot:F1QKD9
Length = 856
Score = 119 (46.9 bits), Expect = 0.00045, P = 0.00045
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 36 VFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFK 94
+F D L F G+ +P +G K++DL ++Y GGY++V + + W+ V
Sbjct: 290 LFLDQLFIFMQRRGSPISKVPNLGFKKIDLFLMYSVVKRLGGYDRVTSHRLWKTVYNELG 349
Query: 95 FSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPS 133
SP +TSA+ R+HY L+ YE + + + P + S
Sbjct: 350 GSPGSTSAATCTRRHYERLMLPYEL--YIRGENPELIKS 386
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 109 (43.4 bits), Expect = 0.00056, P = 0.00056
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
Score = 108 (43.1 bits), Expect = 0.00073, P = 0.00073
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 213 DPSYPKPNRSGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIG 269
DP P+ S Y FF E+H K EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 KVDKARYEREMKTY 78
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 109 (43.4 bits), Expect = 0.00056, P = 0.00056
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E H K+K +P + K +GE W N + ++++ + K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 109 (43.4 bits), Expect = 0.00056, P = 0.00056
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E H K+K +P + K +GE W N + ++++ + K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>RGD|620682 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IMP;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006264
"mitochondrial DNA replication" evidence=TAS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISO;IMP;TAS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISO;ISS] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0031072 "heat shock protein binding"
evidence=IPI] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA;ISO] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0070363
"mitochondrial light strand promoter sense binding"
evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:620682
GO:GO:0005634 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
GO:GO:0006264 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D GeneTree:ENSGT00440000039001
EMBL:AB014089 EMBL:AJ312746 EMBL:AF377866 EMBL:BC062022
IPI:IPI00327334 RefSeq:NP_112616.1 UniGene:Rn.18266
ProteinModelPortal:Q91ZW1 STRING:Q91ZW1 PRIDE:Q91ZW1
Ensembl:ENSRNOT00000000753 GeneID:83474 KEGG:rno:83474
UCSC:RGD:620682 InParanoid:Q91ZW1 NextBio:615889
ArrayExpress:Q91ZW1 Genevestigator:Q91ZW1
GermOnline:ENSRNOG00000000613 Uniprot:Q91ZW1
Length = 244
Score = 110 (43.8 bits), Expect = 0.00061, P = 0.00061
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERY 276
PK RS YN + +E + K + K++ ++W NLS +E++ Y + D+ RY
Sbjct: 154 PKRPRSAYNIYVSESFQEAKD---ESAQGKLKLVNQAWKNLSHDEKQAYIQLAKDDRIRY 210
Query: 277 NRELKEYKERL 287
+ E+K ++E++
Sbjct: 211 DNEMKSWEEQM 221
>ZFIN|ZDB-GENE-100525-3 [details] [associations]
symbol:arid5a "AT rich interactive domain 5A
(MRF1-like)" species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
ZFIN:ZDB-GENE-100525-3 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00510000046413
EMBL:CABZ01070469 EMBL:CABZ01070470 IPI:IPI00886572
Ensembl:ENSDART00000115398 Bgee:F1QHS9 Uniprot:F1QHS9
Length = 600
Score = 116 (45.9 bits), Expect = 0.00062, P = 0.00062
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L +Y T GGY+ V A ++W+ V SP +TSA+ R+HY L
Sbjct: 92 IPHLGFKQINLWKIYKAVETLGGYDAVTARRQWKNVYDELGGSPGSTSAATCTRRHYERL 151
Query: 114 LYHYEQ 119
+ +E+
Sbjct: 152 VLPFER 157
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 108 (43.1 bits), Expect = 0.00064, P = 0.00064
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
DP+ P+ S Y +F + K +P+ EF++ E W +S +E+ ++ +
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 270 LKDKERYNRELKEY 283
DK RY+RE+K Y
Sbjct: 65 KGDKARYDREMKNY 78
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 106 (42.4 bits), Expect = 0.00066, P = 0.00066
Identities = 27/83 (32%), Positives = 39/83 (46%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIG 269
D PK N S Y F K K PN +EF++ E W ++S E+ Y+ +
Sbjct: 5 DQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64
Query: 270 LKDKERYNRELKEY-KERLKLRQ 291
DK RY +E+ Y +R K R+
Sbjct: 65 ELDKARYQQEMMNYIGKRRKRRK 87
>UNIPROTKB|H9KYS8 [details] [associations]
symbol:ARID1A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001606 InterPro:IPR016024
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 EMBL:AADN02051965 EMBL:AADN02051964
Ensembl:ENSGALT00000000486 Uniprot:H9KYS8
Length = 1366
Score = 119 (46.9 bits), Expect = 0.00078, P = 0.00078
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K LDL+ LY+ GG +V KKWRE+ T++SA+ L+K Y+
Sbjct: 132 LPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRELATNLNVG-TSSSAASSLKKQYIQC 190
Query: 114 LYHYE 118
LY +E
Sbjct: 191 LYAFE 195
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 105 (42.0 bits), Expect = 0.00083, P = 0.00083
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 213 DPSYPKPNRSGYNFFFA----EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNI 268
DP P+ S Y FF E+H K EF+K E W +S +E+ ++++
Sbjct: 5 DPKKPRGKMSSYYAFFVQTCREEHKKKHWDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 64
Query: 269 GLKDKERYNRELKEY 283
DK RY RE+K Y
Sbjct: 65 AKADKARYEREMKTY 79
>UNIPROTKB|H0YKM5 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] EMBL:AC090984 Ensembl:ENST00000560867 HGNC:HGNC:5001
ChiTaRS:HMG20A Bgee:H0YKM5 GO:GO:0005634 Gene3D:1.10.30.10
InterPro:IPR009071 Pfam:PF00505 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Uniprot:H0YKM5
Length = 162
Score = 103 (41.3 bits), Expect = 0.00084, P = 0.00084
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
D + PK +GY F E+ +L++ P E T+M+G W+ L PEE++ Y + +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 272 DKER 275
DKER
Sbjct: 159 DKER 162
>UNIPROTKB|F1RFC2 [details] [associations]
symbol:ARID5B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060613 "fat pad development" evidence=IEA] [GO:0060325
"face morphogenesis" evidence=IEA] [GO:0060021 "palate development"
evidence=IEA] [GO:0051091 "positive regulation of sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0048644 "muscle organ morphogenesis" evidence=IEA] [GO:0048468
"cell development" evidence=IEA] [GO:0048008 "platelet-derived
growth factor receptor signaling pathway" evidence=IEA] [GO:0045444
"fat cell differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0030325 "adrenal
gland development" evidence=IEA] [GO:0010761 "fibroblast migration"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0006807
"nitrogen compound metabolic process" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0001822
"kidney development" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 GO:GO:0051091 GO:GO:0030325 GO:GO:0008585
GO:GO:0048644 GO:GO:0005622 GO:GO:0008584 GO:GO:0044212
GO:GO:0048008 GO:GO:0003713 GO:GO:0009791 GO:GO:0001822
GO:GO:0035264 GO:GO:0045444 GO:GO:0060021 GO:GO:0006807
GO:GO:0060325 GO:GO:0048705 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00510000046413 GO:GO:0048468 GO:GO:0060613
GO:GO:0010761 OMA:ILPYERF EMBL:CU062554 EMBL:CU928601
RefSeq:XP_003359257.2 Ensembl:ENSSSCT00000011185 GeneID:100622249
KEGG:ssc:100622249 Uniprot:F1RFC2
Length = 945
Score = 117 (46.2 bits), Expect = 0.00085, P = 0.00085
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 100 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 159
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 160 ILPYER 165
>MGI|MGI:2175912 [details] [associations]
symbol:Arid5b "AT rich interactive domain 5B (MRF1-like)"
species:10090 "Mus musculus" [GO:0001822 "kidney development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006807 "nitrogen compound metabolic process"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0008585 "female gonad development" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0010761 "fibroblast
migration" evidence=IMP] [GO:0030325 "adrenal gland development"
evidence=IMP] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045444 "fat cell differentiation"
evidence=IMP] [GO:0048008 "platelet-derived growth factor receptor
signaling pathway" evidence=IMP] [GO:0048468 "cell development"
evidence=IMP] [GO:0048644 "muscle organ morphogenesis"
evidence=IMP] [GO:0048705 "skeletal system morphogenesis"
evidence=IMP] [GO:0051091 "positive regulation of sequence-specific
DNA binding transcription factor activity" evidence=ISO;IMP]
[GO:0060021 "palate development" evidence=IMP] [GO:0060325 "face
morphogenesis" evidence=IMP] [GO:0060612 "adipose tissue
development" evidence=IMP] [GO:0060613 "fat pad development"
evidence=IMP] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 MGI:MGI:2175912 GO:GO:0005634 GO:GO:0051091
GO:GO:0030325 GO:GO:0008585 GO:GO:0048644 GO:GO:0006351
GO:GO:0008584 GO:GO:0044212 GO:GO:0048008 GO:GO:0003713
GO:GO:0009791 GO:GO:0001822 GO:GO:0035264 GO:GO:0045444
GO:GO:0060021 GO:GO:0006807 GO:GO:0060325 GO:GO:0048705
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00510000046413
GO:GO:0048468 GO:GO:0060613 GO:GO:0010761 CTD:84159
eggNOG:NOG115121 HOVERGEN:HBG050575 OrthoDB:EOG4N5VW9 OMA:ILPYERF
EMBL:AF280065 EMBL:AF401550 EMBL:AK017396 EMBL:AK031596
EMBL:AK034633 EMBL:AC122293 EMBL:AC132588 EMBL:AF169968
IPI:IPI00322729 IPI:IPI00399775 IPI:IPI00855014 RefSeq:NP_076087.2
UniGene:Mm.490355 ProteinModelPortal:Q8BM75 SMR:Q8BM75
STRING:Q8BM75 PhosphoSite:Q8BM75 PRIDE:Q8BM75 DNASU:71371
Ensembl:ENSMUST00000020106 GeneID:71371 KEGG:mmu:71371
UCSC:uc007fmf.1 UCSC:uc007fmg.1 UCSC:uc007fmj.1 InParanoid:Q8BM75
NextBio:333655 Bgee:Q8BM75 CleanEx:MM_ARID5B Genevestigator:Q8BM75
GermOnline:ENSMUSG00000019947 Uniprot:Q8BM75
Length = 1188
Score = 118 (46.6 bits), Expect = 0.00087, P = 0.00087
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVA 82
LS E+ D F L ++ T IP +G K+++L ++ A GGYE + A
Sbjct: 312 LSIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITA 371
Query: 83 EKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119
++W+ + +P +TSA+ R+HY L+ YE+
Sbjct: 372 RRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 408
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRER-EFTKMIGESWTNLSPEERKVYQNIGLK 271
DP PK S Y + E+ LK N+ E KM GE W NLS E++ Y + K
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKG--ENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKK 299
Query: 272 DKERYNRELKEYK 284
+KE Y +E++ YK
Sbjct: 300 NKEIYLQEMEGYK 312
>UNIPROTKB|J9NTN3 [details] [associations]
symbol:ARID1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031
SUPFAM:SSF46774 GeneTree:ENSGT00550000074575 EMBL:AAEX03001719
Ensembl:ENSCAFT00000044234 Uniprot:J9NTN3
Length = 1899
Score = 120 (47.3 bits), Expect = 0.00088, P = 0.00088
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K LDL+ LYV GG +V KKWRE+ T++SA+ L+K Y+
Sbjct: 658 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG-TSSSAASSLKKQYIQC 716
Query: 114 LYHYE 118
LY +E
Sbjct: 717 LYAFE 721
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 107 (42.7 bits), Expect = 0.00090, P = 0.00090
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E H K+K +P + K +GE W N + ++++ + K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y +++ Y+ + K
Sbjct: 151 LKEKYEKDIAAYQAKGK 167
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 107 (42.7 bits), Expect = 0.00094, P = 0.00094
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y ++ Y+ + K
Sbjct: 151 LKEKYEKDTAAYRAKGK 167
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 107 (42.7 bits), Expect = 0.00094, P = 0.00094
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLK 271
DP+ PK S + F +E K+K +P + K +GE W N + ++++ Y+ K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAK 150
Query: 272 DKERYNRELKEYKERLK 288
KE+Y ++ Y+ + K
Sbjct: 151 LKEKYEKDTAAYRAKGK 167
>UNIPROTKB|E1B925 [details] [associations]
symbol:ARID1A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0042921
"glucocorticoid receptor signaling pathway" evidence=IEA]
[GO:0030521 "androgen receptor signaling pathway" evidence=IEA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0042921 GO:GO:0045893 GO:GO:0030521 GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0016514 OMA:GSQYGPQ GO:GO:0030520
GO:GO:0006337 Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031
SUPFAM:SSF46774 GeneTree:ENSGT00550000074575 EMBL:DAAA02006369
EMBL:DAAA02006370 EMBL:DAAA02006371 IPI:IPI01000128
Ensembl:ENSBTAT00000001360 Uniprot:E1B925
Length = 2112
Score = 120 (47.3 bits), Expect = 0.00099, P = 0.00099
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K LDL+ LYV GG +V KKWRE+ T++SA+ L+K Y+
Sbjct: 869 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG-TSSSAASSLKKQYIQC 927
Query: 114 LYHYE 118
LY +E
Sbjct: 928 LYAFE 932
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 297 282 0.00083 115 3 11 22 0.38 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 165
No. of states in DFA: 612 (65 KB)
Total size of DFA: 226 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.48u 0.10s 22.58t Elapsed: 00:00:01
Total cpu time: 22.49u 0.10s 22.59t Elapsed: 00:00:01
Start: Tue May 21 03:48:19 2013 End: Tue May 21 03:48:20 2013
WARNINGS ISSUED: 1