BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022436
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 333 bits (854), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 192/316 (60%), Positives = 216/316 (68%), Gaps = 43/316 (13%)
Query: 18 KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGY 77
K YP PL+ HE V KD VFWDTLRRFH IM TKFMIPVIGGKELDLHVLYVE T RGGY
Sbjct: 25 KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84
Query: 78 EKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSALRA 137
EKVV EKKWREVG VF+FS TTTSASFVLRKHYL LL+HYEQVH F +GP P A
Sbjct: 85 EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATFH 144
Query: 138 G-------LAWLLWNIPRKGLMIIRIHI----------------------------LKLG 162
+A + + P IR H +KLG
Sbjct: 145 ANPSTSKEMALVEYTPPS-----IRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLG 199
Query: 163 SETLSGVLYHPDHPGPSTSFCQSNDVGAIIPY--TPNSKRRYGRRRRSKRRGDPSYPKPN 220
SE L+GVLYH PGPS+S + A++PY T +RR G+RRRS+RR DP+YPKPN
Sbjct: 200 SEILNGVLYHSAQPGPSSSPTAVLN-NAVVPYVETGRRRRRLGKRRRSRRREDPNYPKPN 258
Query: 221 RSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNREL 280
RSGYNFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EER VYQ+IGLKDKERY REL
Sbjct: 259 RSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQREL 318
Query: 281 KEYKERLKLRQGEGAN 296
EY+E L+LR G+ N
Sbjct: 319 NEYRETLRLRDGDMTN 334
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 195/337 (57%), Gaps = 50/337 (14%)
Query: 4 SSAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELD 63
+S++ K SV + + P +++E V DP +F +L R H ++GTKFM+P+IGG++LD
Sbjct: 2 ASSSCLKQGSVPMNNVCVTPEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLD 61
Query: 64 LHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
LH L+VE T+RGG K++ E++W+EV A F F PT T+AS+VLRK+Y +LL +YEQ++FF
Sbjct: 62 LHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFF 121
Query: 124 K---------MQGP---PC-VPSALRAG--LAWLLWNIPRK------------GLMIIRI 156
+ MQ P PC + A+R L L + K G ++ +
Sbjct: 122 RSNGQIPPDSMQSPSARPCFIQGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVGV 181
Query: 157 ----------HILKLGSETLSGVLYHPDHPGPSTSFCQSNDVGAIIPYTPN--------- 197
+ +GSE L GVLY P + S+ ++P T N
Sbjct: 182 IDGKFESGYLVTVTIGSEQLKGVLYQ-LLPQNTVSYQTPQQSHGVLPNTLNISANPQGVA 240
Query: 198 ---SKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESW 254
+KRR R++ +R DP +PKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE W
Sbjct: 241 GGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELW 300
Query: 255 TNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLRQ 291
L+ +E+ +YQ ++DKERY E+++Y+E+ K Q
Sbjct: 301 NKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQ 337
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 159/290 (54%), Gaps = 31/290 (10%)
Query: 15 VEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTR 74
+D PA ++D+ ++ +FW+ LR F + +P +GG LDLH L++E T+R
Sbjct: 27 CDDSSVPA---KYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSR 83
Query: 75 GGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSA 134
GG E+VV ++KW+EV F F T TSASFVLRK+YL L+ E V++ ++ P +
Sbjct: 84 GGIERVVKDRKWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYY--LEKPVSSLQS 141
Query: 135 LRAGLAWLLWNIPR--------------KGLMIIRIH-----ILKLGSETLSGVLYH-PD 174
L L P +G + + +KLGS+ L GVLYH P
Sbjct: 142 TDEALKSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQ 201
Query: 175 HPGPSTSFCQSNDVGAIIPYTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYK 234
P S ++ AI+ +S+RR+ R++ D PK +RSGYNFFFAE++ +
Sbjct: 202 TPSQSQQTMETP--SAIVQ---SSQRRH-RKKSKLAVVDTQKPKCHRSGYNFFFAEQYAR 255
Query: 235 LKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 284
LK Y +ER TK IG W+NL+ E++VYQ+ G+KD ERY E+ EYK
Sbjct: 256 LKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYK 305
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 45/287 (15%)
Query: 27 HEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKW 86
++D+ ++P +FW+ LR FH KF IP++GGK LDLH L+ E T+RGG EKV+ +++
Sbjct: 30 YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89
Query: 87 REVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSALRAGLAWLLWNI 146
+EV F F T T+++FVLRK YL +L+ +E +++F Q P L L+
Sbjct: 90 KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF--QAPLSTFWEKEKALKLLIEKS 147
Query: 147 PRK---------GLMIIRI--------HIL--KLGSETLSGVLYHPDHPGPSTSFCQSND 187
+ G +I I +++ K+GSE L G+LYH
Sbjct: 148 ANRDKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH--------------- 192
Query: 188 VGAIIPYTPNSKRRYGRRRRSKRRGDPSY-PKPNRSGYNFFFAEKHYKLKSLYPNREREF 246
+P +KR G+++ +GD PK R+GYNFF AE+ ++K+ ++
Sbjct: 193 ------ISPETKR--GKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAENAGQKVSS 244
Query: 247 TKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLRQGE 293
K G WTNLS +RKVY +D +RY E+ +Y+ ++ R E
Sbjct: 245 PKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLMESRVAE 291
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 86.3 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 29 DVSKDPIVFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWR 87
D + + F D LR+FH G+ F IP +GGKELDLH LY TT GG+ KV + +W
Sbjct: 11 DERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG 70
Query: 88 EVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
E+ F F + ++A+F L+++YL L YE+VH F
Sbjct: 71 EIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LYV T +GG +V+ +K WRE+
Sbjct: 215 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 274
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 275 PTSITSAAFTLRTQYMKYLYPYE 297
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LYV T +GG +V+ +K WRE+
Sbjct: 218 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 277
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 278 PTSITSAAFTLRTQYMKYLYPYE 300
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 304 PTSITSAAFTLRTQYMKYLYPYE 326
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGSL-LKSHYERILYPYE 170
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEIVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGSL-LKSHYERILYPYE 170
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 249 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 308
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 309 PTSITSAAFTLRTQYMKYLYPYE 331
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL+ LY T +GG +V+ +K WRE+
Sbjct: 238 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNL 297
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 298 PTSITSAAFTLRTQYMKYLYPYE 320
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 116 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 175
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 176 PTTITSAAFTLRTQYMKYLYPYE 198
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 119 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 178
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 179 PTTITSAAFTLRTQYMKYLYPYE 201
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LY T +GG +++ +K WRE+
Sbjct: 219 FLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNL 278
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 279 PTSITSAAFTLRTQYMKYLYAYE 301
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LY T +GG +++ +K WRE+
Sbjct: 221 FLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNL 280
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 281 PTSITSAAFTLRTQYMKYLYAYE 303
>sp|P40632|NHP1_BABBO High mobility group protein homolog NHP1 OS=Babesia bovis PE=1 SV=1
Length = 97
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 201 RYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFT---KMIGESWTNL 257
R G RR K + DP+ PK S Y FF EK ++ + P ++ KMIG +W L
Sbjct: 7 RTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNAL 66
Query: 258 SPEERKVYQNIGLKDKERYNRELKEYKER 286
S EE+K Y+ + +D+ RY RE EY +R
Sbjct: 67 SDEEKKPYERMSDEDRVRYEREKAEYAQR 95
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L + GT IP++ + LDL+ LY +GG +V+ +K+WRE+
Sbjct: 208 FLDDLFSYMQKRGTPVNRIPIMAKQVLDLYELYNLVVAKGGLVEVINKKQWREITKGLNL 267
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 268 PASITSAAFTLRTQYMKYLYPYE 290
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 194 YTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGE 252
Y P GR ++ K+ DP+ PK + S + +F ++ K+K+L P + K +G
Sbjct: 248 YVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGR 307
Query: 253 SWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 289
W+++ PE ++ Y+++ +DK RY RE+ EYK K+
Sbjct: 308 KWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKI 344
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIGLKDK 273
P+ + Y +F + K +P+ EF++ E W + +E+K + + KDK
Sbjct: 179 PRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDK 238
Query: 274 ERYNRELKEY 283
+RY E++ Y
Sbjct: 239 QRYEAEMQNY 248
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 37 FWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL+ LY +GG +V+ +K WRE+
Sbjct: 255 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNL 314
Query: 96 SPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSALRAGL 139
+ TSA+F LR Y+ LY +E K+ VPS L+A +
Sbjct: 315 PSSITSAAFTLRTQYMKYLYPFE-CEREKL----SVPSELQAAI 353
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 207 RSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVY 265
+S R+ DP+ PK N S + FF E K+K+ P+ + ++G+ W L+ ER+ Y
Sbjct: 6 KSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPY 65
Query: 266 QNIGLKDKERYNRELKEYKERL 287
+ +DKERY RE KEY +L
Sbjct: 66 EEKARQDKERYERERKEYDTKL 87
>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
SV=1
Length = 348
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 203 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEE 261
GR+R+ R D + PK +GY F E+ +L++ P E T+M+G W+ L PEE
Sbjct: 91 GRKRKKPLR-DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 149
Query: 262 RKVYQNIGLKDKERYNRELKEYK 284
++ Y + +DKERY REL++Y+
Sbjct: 150 KRRYLDEADRDKERYMRELEQYQ 172
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 13 SVVEDKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLY 68
+V DKL P L+ E ++ + F D + +F + G+ IP++ K LDL+ L+
Sbjct: 204 AVDVDKLRFVPRVQRLNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLH 263
Query: 69 VEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGP 128
GG E+ ++KW +V ++ P++ S L+ HY +L+ +E K+ GP
Sbjct: 264 RIVQEEGGMEQTTKDRKWAKVANRMQY-PSSKSVGATLKAHYERILHPFEVYTSGKVLGP 322
>sp|P26586|HMGL_TRYBR High mobility group protein homolog TDP-1 OS=Trypanosoma brucei
rhodesiense PE=2 SV=1
Length = 271
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 191 IIPYTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFF---FAEKHYKLKSLYPNREREFT 247
+ Y + YGR + K+ D + PK + + FF F KH L + E +
Sbjct: 182 VDEYKRQGGKEYGRGGKIKK--DSNAPKRAMTSFMFFSSDFRSKHSDLSIV------EMS 233
Query: 248 KMIGESWTNLSPEERKVYQNIGLKDKERYNREL 280
K G +W L PEERKVY+ + KDKERY RE+
Sbjct: 234 KAAGAAWKELGPEERKVYEEMAEKDKERYKREM 266
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 215 SYPKPNRSGYNFFFAEKHYKLKSLYPNRER-EFTKMIGESWTNLSPEERKVYQNIGLKDK 273
YPKP S Y F A++ +LK+ P + + +G+ W++ S + ++ Y+ +DK
Sbjct: 116 DYPKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDVKEHYRKKAEEDK 175
Query: 274 ERYNRELKEYKERLKLRQG 292
R+ RE+ EYK RQG
Sbjct: 176 ARFRREVDEYK-----RQG 189
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 29 DVSKDPI--VFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKK 85
+++ DP F D L F GT +P++ LDL+ LY RGG V+ +K
Sbjct: 289 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 348
Query: 86 WREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
W+E+ + TSA+F LR Y+ LY YE
Sbjct: 349 WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 381
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 203 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEE 261
GR+R+ R D + PK +GY F E+ +L++ P E T+M+G W+ L PEE
Sbjct: 89 GRKRKKPLR-DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 147
Query: 262 RKVYQNIGLKDKERYNRELKEYK 284
++ Y + +DKERY +EL++Y+
Sbjct: 148 KQRYLDEADRDKERYMKELEQYQ 170
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 39 DTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPT 98
D L H I IP++ + LDL+ LY GG +++ +K WRE+ +
Sbjct: 190 DWLNFMHRIGKPVTRIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSS 249
Query: 99 TTSASFVLRKHYLTLLYHYE 118
TSA+F LR Y LY YE
Sbjct: 250 ITSAAFTLRTQYQKYLYDYE 269
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 203 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEE 261
GR+R+ R D + PK +GY F E+ +L++ P E T+M+G W+ L PEE
Sbjct: 90 GRKRKKPLR-DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
Query: 262 RKVYQNIGLKDKERYNRELKEYK 284
++ Y + +DKERY +EL++Y+
Sbjct: 149 KQRYLDEADRDKERYMKELEQYQ 171
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 200 RRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLS 258
+ YG + K++ DP+ PK SG+ F +E K+KS P + K +GE W NLS
Sbjct: 76 KDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLS 135
Query: 259 PEERKVYQNIGLKDKERYNRELKEYKERLKLRQGEGA 295
E++ Y N K KE+Y +++ +YK + K +GA
Sbjct: 136 DSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGA 172
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 222 SGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNR 278
S Y FF E+H K P EF+K E W +S +E+ + + DK RY+R
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 279 ELKEY 283
E+K+Y
Sbjct: 74 EMKDY 78
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 29 DVSKDPIVFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWR 87
D + D + D LR F T P I + LDL+ LY+ RGG+ +V K W+
Sbjct: 998 DDNPDRRGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWK 1057
Query: 88 EVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHF 122
++ + ++SA++ LRKHY L +E HF
Sbjct: 1058 DIAGLLGIG-ASSSAAYTLRKHYTKNLLTFE-CHF 1090
>sp|P40630|TFAM_MOUSE Transcription factor A, mitochondrial OS=Mus musculus GN=Tfam PE=1
SV=2
Length = 243
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 199 KRRYGRRRRSKRR-----GDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGES 253
+RR ++ KRR G P P RS YN + +E + K + + K++ E+
Sbjct: 134 QRRLKKKALVKRRELILLGKPKRP---RSAYNIYVSESFQEAKD---DSAQGKLKLVNEA 187
Query: 254 WTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 287
W NLSPEE++ Y + D+ RY+ E+K ++E++
Sbjct: 188 WKNLSPEEKQAYIQLAKDDRIRYDNEMKSWEEQM 221
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 215 SYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKDK 273
SYPK S Y F E+ K K+ +P+ + E + I W L E+KVY+ +
Sbjct: 47 SYPKKPMSSYLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEW 106
Query: 274 ERYNRELKEYKERL 287
+ Y + +YKE+L
Sbjct: 107 KAYKEAVSKYKEQL 120
>sp|E2R9X2|ARI5B_CANFA AT-rich interactive domain-containing protein 5B OS=Canis
familiaris GN=ARID5B PE=3 SV=1
Length = 1187
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 343 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 402
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 403 ILPYER 408
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVA 82
LS E+ D F L ++ T IP +G K+++L ++ A GGYE + A
Sbjct: 312 LSIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITA 371
Query: 83 EKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W+ + +P +TSA+ R+HY L+ YE
Sbjct: 372 RRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE 407
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 345 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 404
Query: 114 LYHYE 118
+ YE
Sbjct: 405 ILPYE 409
>sp|E1BLP6|ARI5B_BOVIN AT-rich interactive domain-containing protein 5B OS=Bos taurus
GN=ARID5B PE=3 SV=1
Length = 1173
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 346 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 405
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 406 ILPYER 411
>sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens
GN=ARID5B PE=1 SV=3
Length = 1188
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 342 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 401
Query: 114 LYHYE 118
+ YE
Sbjct: 402 ILPYE 406
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2
Length = 1503
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
D+L+ P L+ E ++ + F D + +F + G IP + K LDL+ L
Sbjct: 62 DRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWDLQGCTLKIPHVERKILDLYQLNKLVA 121
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG++ V E++W ++ F+P S LR HY +LY Y
Sbjct: 122 DEGGFDLVCRERRWTKIAMTMGFAPGKAVGSH-LRAHYERILYPY 165
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 204 RRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEER 262
+R+RS R D + PK +GY F E+ +L++ P+ E T+++G W+ L E+
Sbjct: 90 KRKRSPR--DNNAPKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEK 147
Query: 263 KVYQNIGLKDKERYNRELKEYK 284
+ Y + KDKERY +EL++Y+
Sbjct: 148 QHYLDEAEKDKERYTKELQQYQ 169
>sp|E7F888|ARI5B_DANRE AT-rich interactive domain-containing protein 5B OS=Danio rerio
GN=arid5b PE=3 SV=1
Length = 1044
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ V +P +TSA+ R+HY L
Sbjct: 236 IPYLGFKQINLWTMFQAAQKLGGYEVITARRQWKNVYDELGGNPGSTSAATCTRRHYERL 295
Query: 114 LYHYE 118
+ YE
Sbjct: 296 ILPYE 300
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
Length = 1522
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
DKL+ P L+ E ++ + F D + +F + G IP + K LDL L
Sbjct: 57 DKLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLFQLNRLVA 116
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG++ V E+KW ++ F+P S + R HY +LY Y
Sbjct: 117 EEGGFDVVCKERKWTKIATRMGFAPGKAVGSHI-RAHYERILYPY 160
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQN 267
+GDP+ P+ S Y FF + K +P+ EF+K E W +S +E+ +++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 268 IGLKDKERYNRELKEY 283
+ DK RY+RE+K Y
Sbjct: 63 LAKSDKARYDREMKNY 78
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKDKER 275
PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K KE+
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEK 154
Query: 276 YNRELKEYKERLKLRQG 292
Y +++ Y+ + K G
Sbjct: 155 YEKDIAAYRAKGKSEVG 171
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQN 267
+GDP+ P+ S Y FF + K +P+ EF+K E W +S +E+ +++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 268 IGLKDKERYNRELKEY 283
+ DK RY+RE+K Y
Sbjct: 63 MAKSDKARYDREMKNY 78
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKDKER 275
PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K KE+
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEK 154
Query: 276 YNRELKEYKERLKLRQG 292
Y +++ Y+ + K G
Sbjct: 155 YEKDIAAYRAKGKSEAG 171
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQN 267
+GDP+ P+ S Y FF + K +P+ EF+K E W +S +E+ +++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 268 IGLKDKERYNRELKEY 283
+ DK RY+RE+K Y
Sbjct: 63 MAKSDKARYDREMKNY 78
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKDKER 275
PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K KE+
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEK 154
Query: 276 YNRELKEYKERLKLRQG 292
Y +++ Y+ + K G
Sbjct: 155 YEKDIAAYRAKGKSEAG 171
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2
SV=1
Length = 1535
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 37 FWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFS 96
+ D + +F I G+ IP + K LDL+ L GGYE + +++W V +
Sbjct: 85 YLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYP 144
Query: 97 PTTTSASFVLRKHYLTLLYHYE 118
P S LR HY ++Y YE
Sbjct: 145 PGKNIGSL-LRSHYERIIYPYE 165
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2
Length = 1539
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 37 FWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFS 96
+ D + +F I G+ IP + K LDL+ L GGYE + +++W V +
Sbjct: 85 YLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYP 144
Query: 97 PTTTSASFVLRKHYLTLLYHYE 118
P S LR HY ++Y YE
Sbjct: 145 PGKNIGSL-LRSHYERIIYPYE 165
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQN 267
+GDP+ P+ S Y FF + K +P+ EF+K E W +S +E+ +++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 268 IGLKDKERYNRELKEY 283
+ DK RY+RE+K Y
Sbjct: 63 MAKSDKARYDREMKNY 78
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKDKER 275
PK S + F +E K+KS +P + K +GE W+ S ++++ Y+ K KE+
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEK 154
Query: 276 YNRELKEYK 284
Y +++ Y+
Sbjct: 155 YEKDIAAYR 163
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2
Length = 1560
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNYPPGKNIGSL-LRSHYERIVYPYE 165
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQN 267
+GDP+ P+ S Y FF + K +P+ EF+K E W +S +E+ +++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 268 IGLKDKERYNRELKEY 283
+ DK RY+RE+K Y
Sbjct: 63 LAKSDKARYDREMKNY 78
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 217 PKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKDKER 275
PK S + F +E K+K +P + K +GE W+ S ++++ Y+ K KE+
Sbjct: 95 PKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEK 154
Query: 276 YNRELKEYKERLKLRQG 292
Y +++ Y+ + K G
Sbjct: 155 YEKDIAAYRAKGKSEAG 171
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNYPPGKNIGSL-LRSHYERIVYPYE 165
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 204 RRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEER 262
+R+RS R D + PK +GY F E+ +L++ P+ E T+++G W+ L E+
Sbjct: 90 KRKRSPR--DNNAPKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEK 147
Query: 263 KVYQNIGLKDKERYNRELKEYK 284
+ Y + KDKERY +EL++Y+
Sbjct: 148 QHYLDEAEKDKERYTKELQKYQ 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,475,724
Number of Sequences: 539616
Number of extensions: 5333739
Number of successful extensions: 13272
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 12921
Number of HSP's gapped (non-prelim): 292
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)