Query 022436
Match_columns 297
No_of_seqs 290 out of 1536
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:27:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 100.0 1.9E-29 6.3E-34 202.3 5.9 101 32-133 2-103 (107)
2 2jrz_A Histone demethylase jar 99.9 3.6E-28 1.2E-32 197.8 8.7 96 25-121 3-98 (117)
3 2eqy_A RBP2 like, jumonji, at 99.9 9.6E-28 3.3E-32 196.7 11.0 102 24-127 4-105 (122)
4 2rq5_A Protein jumonji; develo 99.9 9.8E-28 3.3E-32 196.0 9.8 89 33-121 12-101 (121)
5 2lm1_A Lysine-specific demethy 99.9 6.9E-28 2.4E-32 193.1 8.4 97 24-121 6-102 (107)
6 2cxy_A BAF250B subunit, HBAF25 99.9 1.6E-27 5.4E-32 196.2 10.5 97 32-129 20-117 (125)
7 2jxj_A Histone demethylase jar 99.9 8E-28 2.7E-32 189.1 7.8 92 29-121 3-94 (96)
8 1c20_A DEAD ringer protein; DN 99.9 5.9E-27 2E-31 193.5 9.4 91 32-122 21-112 (128)
9 2li6_A SWI/SNF chromatin-remod 99.9 5.1E-27 1.7E-31 190.7 7.5 98 24-127 10-108 (116)
10 1kkx_A Transcription regulator 99.9 1.2E-26 3.9E-31 190.4 8.9 94 26-125 11-105 (123)
11 2kk0_A AT-rich interactive dom 99.9 3.2E-26 1.1E-30 192.9 9.0 89 33-121 34-123 (145)
12 2co9_A Thymus high mobility gr 99.9 1.1E-22 3.9E-27 161.3 12.4 89 206-294 7-96 (102)
13 2eqz_A High mobility group pro 99.9 3.3E-22 1.1E-26 153.7 11.0 78 207-284 6-86 (86)
14 1k99_A Upstream binding factor 99.9 7.4E-22 2.5E-26 155.9 8.3 81 208-288 2-83 (99)
15 2lhj_A High mobility group pro 99.9 1.8E-22 6.2E-27 158.6 4.4 85 203-287 9-96 (97)
16 1cg7_A Protein (NON histone pr 99.9 2.6E-22 9E-27 156.6 5.2 82 206-287 10-92 (93)
17 1hme_A High mobility group pro 99.9 8.1E-22 2.8E-26 148.1 7.4 75 211-285 1-76 (77)
18 2crj_A SWI/SNF-related matrix- 99.9 2.7E-21 9.1E-26 150.5 10.5 79 211-289 2-81 (92)
19 2cs1_A PMS1 protein homolog 1; 99.8 3.1E-21 1.1E-25 150.1 9.9 80 211-290 2-82 (92)
20 1wgf_A Upstream binding factor 99.8 1.1E-21 3.8E-26 152.1 5.4 79 204-282 8-87 (90)
21 2e6o_A HMG box-containing prot 99.8 3.1E-21 1.1E-25 148.6 7.5 76 209-284 10-86 (87)
22 1aab_A High mobility group pro 99.8 1.8E-21 6.2E-26 148.4 4.9 76 211-286 2-80 (83)
23 1hry_A Human SRY; DNA, DNA-bin 99.8 4.1E-21 1.4E-25 143.9 6.6 73 213-285 1-74 (76)
24 3nm9_A HMG-D, high mobility gr 99.8 1.6E-20 5.4E-25 139.9 9.6 71 214-286 1-72 (73)
25 1ckt_A High mobility group 1 p 99.8 2.5E-20 8.5E-25 137.7 7.4 68 216-283 1-71 (71)
26 1wxl_A Single-strand recogniti 99.8 2E-20 6.9E-25 139.3 6.8 71 214-286 1-72 (73)
27 4a3n_A Transcription factor SO 99.8 2.1E-20 7.1E-25 137.9 6.6 70 215-284 1-71 (71)
28 1j46_A SRY, sex-determining re 99.8 3.6E-20 1.2E-24 142.0 7.7 77 213-289 1-78 (85)
29 1wz6_A HMG-box transcription f 99.8 1.2E-20 4.1E-25 143.5 4.8 77 211-287 2-79 (82)
30 1v64_A Nucleolar transcription 99.8 9.9E-20 3.4E-24 145.9 9.5 79 208-290 8-88 (108)
31 2gzk_A Sex-determining region 99.8 1.4E-19 4.7E-24 153.7 11.0 77 209-285 81-158 (159)
32 1gt0_D Transcription factor SO 99.8 6.3E-20 2.2E-24 138.8 7.3 74 215-288 1-75 (80)
33 1l8y_A Upstream binding factor 99.8 1.1E-19 3.6E-24 141.1 8.4 76 215-290 3-78 (91)
34 4euw_A Transcription factor SO 99.8 7.2E-20 2.5E-24 146.2 7.5 79 210-288 23-102 (106)
35 3fgh_A Transcription factor A, 99.8 1.1E-19 3.8E-24 133.0 7.9 66 215-283 1-66 (67)
36 3f27_D Transcription factor SO 99.8 7.3E-20 2.5E-24 139.3 7.0 76 213-288 3-79 (83)
37 3u2b_C Transcription factor SO 99.8 9.3E-20 3.2E-24 137.3 6.9 74 215-288 1-75 (79)
38 2lef_A LEF-1 HMG, protein (lym 99.8 1.6E-19 5.6E-24 138.5 7.7 73 215-287 1-74 (86)
39 1i11_A Transcription factor SO 99.8 1.2E-19 4E-24 137.7 5.9 75 214-288 2-77 (81)
40 2yrq_A High mobility group pro 99.8 7E-19 2.4E-23 151.5 10.8 77 210-286 95-172 (173)
41 1v63_A Nucleolar transcription 99.8 1.7E-18 6E-23 137.0 10.5 78 212-291 4-82 (101)
42 2yrq_A High mobility group pro 99.7 4.3E-18 1.5E-22 146.5 10.3 81 206-286 5-88 (173)
43 3tmm_A Transcription factor A, 99.7 9.6E-18 3.3E-22 151.7 8.1 80 210-289 35-115 (238)
44 2d7l_A WD repeat and HMG-box D 99.7 1.1E-17 3.8E-22 127.4 6.6 62 212-273 1-64 (81)
45 3tq6_A Transcription factor A, 99.7 3.3E-18 1.1E-22 152.4 2.5 77 208-287 106-182 (214)
46 2cto_A Novel protein; high mob 99.7 1.5E-17 5E-22 129.9 5.6 69 211-281 5-77 (93)
47 3tq6_A Transcription factor A, 99.7 4.8E-17 1.6E-21 144.9 9.0 77 213-289 6-83 (214)
48 3tmm_A Transcription factor A, 99.7 3.5E-18 1.2E-22 154.6 1.4 77 208-287 138-214 (238)
49 2yuk_A Myeloid/lymphoid or mix 99.7 3.8E-18 1.3E-22 132.3 1.0 68 208-279 14-84 (90)
50 2gzk_A Sex-determining region 99.6 4.7E-15 1.6E-19 125.6 7.6 73 214-286 2-75 (159)
51 1gvd_A MYB proto-oncogene prot 77.7 1.8 6.2E-05 28.7 3.1 39 66-116 13-51 (52)
52 1ity_A TRF1; helix-turn-helix, 77.6 2.5 8.4E-05 29.9 3.9 41 66-116 20-60 (69)
53 2dim_A Cell division cycle 5-l 75.6 2.4 8.2E-05 30.0 3.4 39 66-116 19-57 (70)
54 1guu_A C-MYB, MYB proto-oncoge 75.0 2.6 8.8E-05 27.9 3.2 39 66-116 13-51 (52)
55 1w0t_A Telomeric repeat bindin 71.3 4.8 0.00016 26.7 3.9 39 66-114 12-50 (53)
56 2d9a_A B-MYB, MYB-related prot 70.7 3.8 0.00013 27.9 3.4 39 66-116 18-56 (60)
57 1x41_A Transcriptional adaptor 68.6 3.7 0.00013 28.2 2.9 37 67-115 19-55 (60)
58 2elk_A SPCC24B10.08C protein; 66.0 6.3 0.00021 26.8 3.7 39 66-115 19-57 (58)
59 3sjm_A Telomeric repeat-bindin 61.0 9.5 0.00032 26.6 3.9 40 66-115 21-60 (64)
60 2yum_A ZZZ3 protein, zinc fing 57.8 13 0.00046 26.3 4.4 46 66-118 18-63 (75)
61 3ukx_C Bimax2 peptide; arm rep 55.1 8.5 0.00029 22.0 2.2 11 210-220 14-24 (28)
62 2din_A Cell division cycle 5-l 54.8 17 0.0006 25.0 4.4 39 67-119 20-58 (66)
63 2cu7_A KIAA1915 protein; nucle 52.8 14 0.00048 26.0 3.7 41 66-119 19-59 (72)
64 2k9n_A MYB24; R2R3 domain, DNA 51.2 12 0.00041 28.4 3.4 39 66-116 11-49 (107)
65 2yus_A SWI/SNF-related matrix- 47.9 15 0.00052 26.7 3.3 35 66-113 28-62 (79)
66 1gv2_A C-MYB, MYB proto-oncoge 44.6 15 0.00052 27.6 3.0 38 66-115 14-51 (105)
67 1bax_A M-PMV MA, M-PMV matrix 42.9 20 0.00067 27.3 3.3 53 35-94 9-64 (94)
68 2lpy_A Matrix protein P10; GAG 39.8 60 0.002 25.8 5.8 55 33-94 6-63 (124)
69 2qgu_A Probable signal peptide 38.7 19 0.00065 30.9 3.0 46 240-285 70-118 (211)
70 1h8a_C AMV V-MYB, MYB transfor 35.8 30 0.001 26.9 3.6 39 65-115 36-74 (128)
71 2do5_A Splicing factor 3B subu 35.4 40 0.0014 22.7 3.5 28 32-59 29-56 (58)
72 2k9n_A MYB24; R2R3 domain, DNA 33.1 46 0.0016 25.0 4.1 40 66-118 63-102 (107)
73 2cqq_A RSGI RUH-037, DNAJ homo 30.0 62 0.0021 23.0 4.1 28 83-116 31-58 (72)
74 2o37_A Protein SIS1; HSP40, J- 29.8 75 0.0026 23.1 4.7 37 229-265 27-66 (92)
75 1fex_A TRF2-interacting telome 27.9 62 0.0021 22.0 3.6 46 66-115 12-58 (59)
76 2cqr_A RSGI RUH-043, DNAJ homo 27.0 37 0.0013 24.3 2.4 28 83-115 41-68 (73)
77 2lo0_A Uncharacterized protein 26.0 33 0.0011 24.9 2.0 17 32-48 37-53 (75)
78 3zqc_A MYB3; transcription-DNA 25.0 44 0.0015 26.1 2.8 38 66-116 64-101 (131)
79 2ltp_A Nuclear receptor corepr 30.6 16 0.00053 27.1 0.0 29 85-118 37-65 (89)
80 3osg_A MYB21; transcription-DN 24.2 57 0.0019 25.3 3.3 37 66-115 21-57 (126)
81 2och_A Hypothetical protein DN 23.3 1E+02 0.0035 21.1 4.2 35 229-263 27-64 (73)
82 2ckx_A NGTRF1, telomere bindin 22.1 1E+02 0.0034 22.5 4.1 39 67-115 11-51 (83)
83 2yua_A Williams-beuren syndrom 20.7 1.5E+02 0.005 21.7 4.9 39 229-267 36-80 (99)
84 1h89_C C-MYB, MYB proto-oncoge 20.6 73 0.0025 25.6 3.3 38 66-115 68-105 (159)
85 1hdj_A Human HSP40, HDJ-1; mol 20.3 1.9E+02 0.0065 19.9 5.2 36 229-264 22-62 (77)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.95 E-value=1.9e-29 Score=202.31 Aligned_cols=101 Identities=28% Similarity=0.471 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHH
Q 022436 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (297)
Q Consensus 32 ~~~~~F~~~L~~f~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y 110 (297)
+|++.|+++|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++||.+++|.+||+.||++++++++++.|+.+|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 478999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhhhhccCCCCCCCC
Q 022436 111 LTLLYHYEQVHFFKMQGPPCVPS 133 (297)
Q Consensus 111 ~k~L~~yE~~~~~~~~~~~~~~~ 133 (297)
++||++||+ ++.++++.+.++.
T Consensus 82 ~k~L~~yE~-~~~~~~~~~~p~~ 103 (107)
T 1ig6_A 82 ERLILPYER-FIKGEEDKPLPPI 103 (107)
T ss_dssp HHHTTTTHH-HHHHHTSSSSCTT
T ss_pred HHHHHHHHH-HHcCCCCCCCCCC
Confidence 999999999 6678877766653
No 2
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.95 E-value=3.6e-28 Score=197.82 Aligned_cols=96 Identities=26% Similarity=0.540 Sum_probs=90.9
Q ss_pred CCCCccCCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHH
Q 022436 25 SSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASF 104 (297)
Q Consensus 25 ~~~e~~~~~~~~F~~~L~~f~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~ 104 (297)
++.|+.++++..|+++|.+||+.+|+++++|.|+|++||||+||.+|+++|||++||.+++|.+||+.||++++ +++++
T Consensus 3 nele~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~ 81 (117)
T 2jrz_A 3 NELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGS 81 (117)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999987 78999
Q ss_pred HHHHHHHHhhHHHHhhh
Q 022436 105 VLRKHYLTLLYHYEQVH 121 (297)
Q Consensus 105 ~Lk~~Y~k~L~~yE~~~ 121 (297)
.||.+|.+||++||++.
T Consensus 82 ~Lk~~Y~k~L~~yE~~~ 98 (117)
T 2jrz_A 82 LLRSHYERIVYPYEMYQ 98 (117)
T ss_dssp HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999944
No 3
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.95 E-value=9.6e-28 Score=196.66 Aligned_cols=102 Identities=25% Similarity=0.418 Sum_probs=94.3
Q ss_pred CCCCCccCCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHH
Q 022436 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (297)
Q Consensus 24 ~~~~e~~~~~~~~F~~~L~~f~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s 103 (297)
+++.|+.+++++.|+++|.+||+.+|+++++|+|+|++||||+||++|+++|||++||.+++|.+|++.||++++ ++++
T Consensus 4 Lnele~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~ 82 (122)
T 2eqy_A 4 GSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVG 82 (122)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCC-CcHH
Confidence 577888999999999999999999999999999999999999999999999999999999999999999999975 5788
Q ss_pred HHHHHHHHHhhHHHHhhhhhccCC
Q 022436 104 FVLRKHYLTLLYHYEQVHFFKMQG 127 (297)
Q Consensus 104 ~~Lk~~Y~k~L~~yE~~~~~~~~~ 127 (297)
+.||++|++||++||+ +..+...
T Consensus 83 ~~Lr~~Y~k~L~~yE~-~~~~~~~ 105 (122)
T 2eqy_A 83 SHIRGHYERILNPYNL-FLSGDSL 105 (122)
T ss_dssp HHHHHHHHHTHHHHHH-HHHCCTT
T ss_pred HHHHHHHHHHhHHHHH-HHhcCCc
Confidence 9999999999999999 4444433
No 4
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.95 E-value=9.8e-28 Score=196.03 Aligned_cols=89 Identities=22% Similarity=0.437 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHH
Q 022436 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (297)
Q Consensus 33 ~~~~F~~~L~~f~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~ 111 (297)
....|+++|.+||+.+|++| ++|.|+|++||||+||..|+++|||++||.+++|++||..||+|++++++++.||.+|.
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~ 91 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC 91 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 45789999999999999999 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhhh
Q 022436 112 TLLYHYEQVH 121 (297)
Q Consensus 112 k~L~~yE~~~ 121 (297)
+||++||++.
T Consensus 92 k~L~~YE~~~ 101 (121)
T 2rq5_A 92 QYLLSYDSLS 101 (121)
T ss_dssp TTHHHHHHCC
T ss_pred HHhHHHHCcC
Confidence 9999999843
No 5
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.94 E-value=6.9e-28 Score=193.06 Aligned_cols=97 Identities=26% Similarity=0.484 Sum_probs=91.6
Q ss_pred CCCCCccCCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHH
Q 022436 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (297)
Q Consensus 24 ~~~~e~~~~~~~~F~~~L~~f~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s 103 (297)
+++.++.+++++.|+++|.+||+.+|+++++|.|+|++||||+||.+|+++|||++|+.+++|.+||..||+|++ ++++
T Consensus 6 L~el~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~ 84 (107)
T 2lm1_A 6 LNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVG 84 (107)
T ss_dssp SCSSCCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHH
T ss_pred hhhccCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHH
Confidence 456777888999999999999999999999999999999999999999999999999999999999999999975 7899
Q ss_pred HHHHHHHHHhhHHHHhhh
Q 022436 104 FVLRKHYLTLLYHYEQVH 121 (297)
Q Consensus 104 ~~Lk~~Y~k~L~~yE~~~ 121 (297)
+.||.+|++||++||+..
T Consensus 85 ~~lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 85 ATLKAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999954
No 6
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.94 E-value=1.6e-27 Score=196.16 Aligned_cols=97 Identities=30% Similarity=0.488 Sum_probs=91.0
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHH
Q 022436 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (297)
Q Consensus 32 ~~~~~F~~~L~~f~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y 110 (297)
.+++.|+++|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++|+.+++|.+||+.||++. ++++++.||++|
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~Y 98 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQY 98 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHHH
Confidence 467789999999999999999 799999999999999999999999999999999999999999996 478999999999
Q ss_pred HHhhHHHHhhhhhccCCCC
Q 022436 111 LTLLYHYEQVHFFKMQGPP 129 (297)
Q Consensus 111 ~k~L~~yE~~~~~~~~~~~ 129 (297)
++||++||+++..|+..++
T Consensus 99 ~k~L~~yE~~~~~g~~~p~ 117 (125)
T 2cxy_A 99 IQYLFAFECKIERGEEPPP 117 (125)
T ss_dssp HHHTHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCh
Confidence 9999999999888886553
No 7
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.94 E-value=8e-28 Score=189.10 Aligned_cols=92 Identities=35% Similarity=0.597 Sum_probs=86.8
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHH
Q 022436 29 DVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRK 108 (297)
Q Consensus 29 ~~~~~~~~F~~~L~~f~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~ 108 (297)
+.+++++.|+++|.+||+.+|+++++|.|+|++||||+||.+|+++|||++|+++++|.+|++.||+++++ ++++.||+
T Consensus 3 ~~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~ 81 (96)
T 2jxj_A 3 LGSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKS 81 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999876 57889999
Q ss_pred HHHHhhHHHHhhh
Q 022436 109 HYLTLLYHYEQVH 121 (297)
Q Consensus 109 ~Y~k~L~~yE~~~ 121 (297)
+|++||++||+..
T Consensus 82 ~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 82 HYERILYPYELFQ 94 (96)
T ss_dssp HHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999953
No 8
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.94 E-value=5.9e-27 Score=193.46 Aligned_cols=91 Identities=33% Similarity=0.511 Sum_probs=88.3
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHH
Q 022436 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (297)
Q Consensus 32 ~~~~~F~~~L~~f~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y 110 (297)
++++.|++.|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++||.+++|.+||+.||++++++++++.||++|
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y 100 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 689999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhhh
Q 022436 111 LTLLYHYEQVHF 122 (297)
Q Consensus 111 ~k~L~~yE~~~~ 122 (297)
++||++||+++.
T Consensus 101 ~k~L~~yE~~~~ 112 (128)
T 1c20_A 101 MKYLYPYECEKK 112 (128)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999664
No 9
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.1e-27 Score=190.73 Aligned_cols=98 Identities=26% Similarity=0.395 Sum_probs=91.0
Q ss_pred CCCCCccCCChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcH
Q 022436 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSA 102 (297)
Q Consensus 24 ~~~~e~~~~~~~~F~~~L~~f~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~ 102 (297)
+++.|..+++++.|++.|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++||.+++|.+||..||+++
T Consensus 10 ln~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~----- 84 (116)
T 2li6_A 10 KISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD----- 84 (116)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----
Confidence 56778888999999999999999999999 799999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHhhHHHHhhhhhccCC
Q 022436 103 SFVLRKHYLTLLYHYEQVHFFKMQG 127 (297)
Q Consensus 103 s~~Lk~~Y~k~L~~yE~~~~~~~~~ 127 (297)
++.|+.+|++||++||+ |+.+.++
T Consensus 85 ~~~Lr~~Y~k~L~~yE~-~~~~~~g 108 (116)
T 2li6_A 85 YQQLESIYFRILLPYER-HMISQEG 108 (116)
T ss_dssp TTHHHHHHHHHHSHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH-HHhCccc
Confidence 46899999999999999 6565554
No 10
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.93 E-value=1.2e-26 Score=190.40 Aligned_cols=94 Identities=24% Similarity=0.410 Sum_probs=85.2
Q ss_pred CCCccCCChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHH
Q 022436 26 SHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASF 104 (297)
Q Consensus 26 ~~e~~~~~~~~F~~~L~~f~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~ 104 (297)
.+++.+++++.|++.|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++||.+++|.+||+.||+++ ++
T Consensus 11 ~~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~ 85 (123)
T 1kkx_A 11 HHGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQ 85 (123)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HH
T ss_pred ccCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HH
Confidence 467788999999999999999999999 799999999999999999999999999999999999999999996 67
Q ss_pred HHHHHHHHhhHHHHhhhhhcc
Q 022436 105 VLRKHYLTLLYHYEQVHFFKM 125 (297)
Q Consensus 105 ~Lk~~Y~k~L~~yE~~~~~~~ 125 (297)
.||.+|++||++||+ |+.+.
T Consensus 86 ~Lr~~Y~k~L~~yE~-~~~~~ 105 (123)
T 1kkx_A 86 QLESIYFRILLPYER-HMISQ 105 (123)
T ss_dssp HHHHHHHHHHHHHHH-HSCTT
T ss_pred HHHHHHHHHHHHHHH-HHhCc
Confidence 999999999999999 44443
No 11
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.93 E-value=3.2e-26 Score=192.88 Aligned_cols=89 Identities=37% Similarity=0.614 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHH
Q 022436 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (297)
Q Consensus 33 ~~~~F~~~L~~f~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~ 111 (297)
+++.|+++|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++||.+++|.+||..||++.+++++++.|+++|+
T Consensus 34 ~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~ 113 (145)
T 2kk0_A 34 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYM 113 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 48999999999999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhhh
Q 022436 112 TLLYHYEQVH 121 (297)
Q Consensus 112 k~L~~yE~~~ 121 (297)
+||++||+..
T Consensus 114 k~L~~yE~~~ 123 (145)
T 2kk0_A 114 KYLYPYECEK 123 (145)
T ss_dssp HHSSHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999964
No 12
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=1.1e-22 Score=161.28 Aligned_cols=89 Identities=26% Similarity=0.515 Sum_probs=82.7
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 206 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 284 (297)
Q Consensus 206 k~~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk 284 (297)
+++++.+||++||||+|||+||++++|..|+.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|+
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhcccccccC
Q 022436 285 ERLKLRQGEG 294 (297)
Q Consensus 285 ~~~~~~~~~~ 294 (297)
.........+
T Consensus 87 ~~~~~~~~~e 96 (102)
T 2co9_A 87 ASLVSKSYTD 96 (102)
T ss_dssp HHHTSSCCCC
T ss_pred hhcccccccc
Confidence 9887765554
No 13
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=153.68 Aligned_cols=78 Identities=33% Similarity=0.598 Sum_probs=73.8
Q ss_pred cccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 207 RSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEY 283 (297)
Q Consensus 207 ~~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~--~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~y 283 (297)
+++.++||++||||+|||+||++++|.+++.+||+ + +.||+++||++|++|+++||++|+++|++++++|.++|++|
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567899999999999999999999999999999 4 69999999999999999999999999999999999999999
Q ss_pred H
Q 022436 284 K 284 (297)
Q Consensus 284 k 284 (297)
+
T Consensus 86 ~ 86 (86)
T 2eqz_A 86 G 86 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.86 E-value=7.4e-22 Score=155.88 Aligned_cols=81 Identities=25% Similarity=0.471 Sum_probs=77.0
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022436 208 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 286 (297)
Q Consensus 208 ~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~ 286 (297)
+++++||++||||+|||+||++++|.+|+.++|+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|++.
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999 999999999999999999999999999999999999999999986
Q ss_pred cc
Q 022436 287 LK 288 (297)
Q Consensus 287 ~~ 288 (297)
..
T Consensus 82 ~P 83 (99)
T 1k99_A 82 HP 83 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 15
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.85 E-value=1.8e-22 Score=158.59 Aligned_cols=85 Identities=40% Similarity=0.650 Sum_probs=79.4
Q ss_pred cccccccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 022436 203 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRE 279 (297)
Q Consensus 203 ~kkk~~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~--~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e 279 (297)
.+++++++.+||++||||+|||+||++++|.+++.+||+ + +.+|+++||++|++|+++||++|+++|++++++|.++
T Consensus 9 ~k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 88 (97)
T 2lhj_A 9 GVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYERE 88 (97)
T ss_dssp SCCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778999999999999999999999999999999 7 9999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 022436 280 LKEYKERL 287 (297)
Q Consensus 280 ~~~yk~~~ 287 (297)
|++|++..
T Consensus 89 ~~~y~~~~ 96 (97)
T 2lhj_A 89 KAEYAQRK 96 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999753
No 16
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.85 E-value=2.6e-22 Score=156.56 Aligned_cols=82 Identities=34% Similarity=0.614 Sum_probs=78.0
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 206 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 284 (297)
Q Consensus 206 k~~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk 284 (297)
+++++.+||++||||+|||+||++++|..++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|+
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred Hhc
Q 022436 285 ERL 287 (297)
Q Consensus 285 ~~~ 287 (297)
+..
T Consensus 90 ~~~ 92 (93)
T 1cg7_A 90 ATL 92 (93)
T ss_dssp HHT
T ss_pred Hcc
Confidence 864
No 17
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.85 E-value=8.1e-22 Score=148.10 Aligned_cols=75 Identities=28% Similarity=0.547 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 285 (297)
Q Consensus 211 ~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~ 285 (297)
++||++||||+|||+||++++|..++.+||+ ++.+|+++||++|+.|+++||++|+++|+.++++|.++|++|++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 99999999999999999999999999999999999999999975
No 18
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.85 E-value=2.7e-21 Score=150.47 Aligned_cols=79 Identities=30% Similarity=0.557 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022436 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 289 (297)
Q Consensus 211 ~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~~ 289 (297)
.+||++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|+.....
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~ 81 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAY 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 5799999999999999999999999999999 999999999999999999999999999999999999999999986543
No 19
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=150.12 Aligned_cols=80 Identities=28% Similarity=0.313 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022436 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 289 (297)
Q Consensus 211 ~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~~ 289 (297)
..++++||||+|||+||++++|.+++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|++....
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999999999 999999999999999999999999999999999999999999987654
Q ss_pred c
Q 022436 290 R 290 (297)
Q Consensus 290 ~ 290 (297)
.
T Consensus 82 ~ 82 (92)
T 2cs1_A 82 M 82 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 20
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=1.1e-21 Score=152.10 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=73.3
Q ss_pred ccccccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 204 RRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKE 282 (297)
Q Consensus 204 kkk~~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~ 282 (297)
+++++++.+||++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|..
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667899999999999999999999999999999 99999999999999999999999999999999999987753
No 21
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=148.58 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=73.3
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 209 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 284 (297)
Q Consensus 209 ~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk 284 (297)
++.+||++||||+|||+||++++|.+++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|++++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 457899999999999999999999999999999 9999999999999999999999999999999999999999885
No 22
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.83 E-value=1.8e-21 Score=148.39 Aligned_cols=76 Identities=33% Similarity=0.631 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022436 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 286 (297)
Q Consensus 211 ~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~--~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~ 286 (297)
++||++||||+|||+||++++|.+++.+||+ + +.+|+++||++|++|+++||++|+++|++++++|.++|++|+..
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999 5 59999999999999999999999999999999999999999764
No 23
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.83 E-value=4.1e-21 Score=143.88 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=69.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 285 (297)
Q Consensus 213 dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~ 285 (297)
||++||||+|||+||++++|.+++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999 99999999999999999999999999999999999999999864
No 24
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.83 E-value=1.6e-20 Score=139.90 Aligned_cols=71 Identities=24% Similarity=0.463 Sum_probs=68.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022436 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 286 (297)
Q Consensus 214 p~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~ 286 (297)
+++||||+|||+|||+++|.+++.+||+ ++.+|+++||++|++|++ |++|+++|++++++|+++|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 999999999999999998 9999999999999999999999975
No 25
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.81 E-value=2.5e-20 Score=137.74 Aligned_cols=68 Identities=32% Similarity=0.602 Sum_probs=65.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 216 YPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEY 283 (297)
Q Consensus 216 ~PKrP~saY~lF~~e~r~~lk~~~p~-~--~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~y 283 (297)
+||||+|||+||++++|..++.+||+ + +.+|+++||++|++|+++||++|+++|++++++|.++|++|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 5 59999999999999999999999999999999999999876
No 26
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2e-20 Score=139.33 Aligned_cols=71 Identities=25% Similarity=0.572 Sum_probs=68.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022436 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 286 (297)
Q Consensus 214 p~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~ 286 (297)
|++||||+|||++|++++|.+++.+||+ ++.+|+++||++|++| +||++|+++|++++++|.++|++|++.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6899999999999999999999999999 9999999999999999 889999999999999999999999764
No 27
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.81 E-value=2.1e-20 Score=137.92 Aligned_cols=70 Identities=17% Similarity=0.375 Sum_probs=62.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 215 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 284 (297)
Q Consensus 215 ~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk 284 (297)
++||||+|||+||++++|..++.++|+ ++.+|+++||++|+.|+++||++|+++|++++++|++++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 9999999999999999999999999999999999999999996
No 28
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.81 E-value=3.6e-20 Score=141.98 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=73.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022436 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 289 (297)
Q Consensus 213 dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~~ 289 (297)
.|++||||+|||+||++++|..++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|..+|++|+...+.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr 78 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRR 78 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCC
Confidence 37899999999999999999999999999 999999999999999999999999999999999999999999876543
No 29
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.81 E-value=1.2e-20 Score=143.52 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022436 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 287 (297)
Q Consensus 211 ~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~ 287 (297)
..|+++||||+|||+||++++|.+++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|+...
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 3578999999999999999999999999999 9999999999999999999999999999999999999999998654
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.80 E-value=9.9e-20 Score=145.91 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=72.9
Q ss_pred ccCCCCCCCC-CCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 208 SKRRGDPSYP-KPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 285 (297)
Q Consensus 208 ~~~~~dp~~P-KrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~ 285 (297)
.++.+|+++| |||+|||+|||+++|.+++ + ++.||+++||++|+.|+++||++|+++|++++++|.++|++|++
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456899999 9999999999999999987 6 79999999999999999999999999999999999999999999
Q ss_pred hcccc
Q 022436 286 RLKLR 290 (297)
Q Consensus 286 ~~~~~ 290 (297)
.+...
T Consensus 84 ~~~~~ 88 (108)
T 1v64_A 84 SLPEE 88 (108)
T ss_dssp HSCHH
T ss_pred hCCHH
Confidence 76543
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.80 E-value=1.4e-19 Score=153.68 Aligned_cols=77 Identities=29% Similarity=0.558 Sum_probs=74.4
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 209 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 285 (297)
Q Consensus 209 ~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~ 285 (297)
++.+||++||||+|||++||+++|.+++.+||+ ++.+|+++||++|++|+++||++|+++|.+++++|.++|++|++
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346799999999999999999999999999999 99999999999999999999999999999999999999999985
No 32
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.80 E-value=6.3e-20 Score=138.78 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=70.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022436 215 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 288 (297)
Q Consensus 215 ~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~ 288 (297)
++||||+|||+||++++|.+++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|+...+
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 75 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 479999999999999999999999999 99999999999999999999999999999999999999999987654
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.80 E-value=1.1e-19 Score=141.13 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=72.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 022436 215 SYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLR 290 (297)
Q Consensus 215 ~~PKrP~saY~lF~~e~r~~lk~~~p~~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~~~ 290 (297)
+.||||+|||++|+++.|..++.++|+++.+|+|+||++|++|+++||++|+++|.+|+++|.+||.+|+......
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~ 78 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAAT 78 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999876653
No 34
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.80 E-value=7.2e-20 Score=146.15 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=70.1
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022436 210 RRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 288 (297)
Q Consensus 210 ~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~ 288 (297)
..+++++||||+|||+||++++|.+++.++|+ ++.+|+++||++|+.|+++||++|+++|++++++|+++|++|+...+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Pr 102 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPR 102 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC---
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCC
Confidence 36789999999999999999999999999999 99999999999999999999999999999999999999999987544
No 35
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=133.01 Aligned_cols=66 Identities=36% Similarity=0.628 Sum_probs=63.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 215 SYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEY 283 (297)
Q Consensus 215 ~~PKrP~saY~lF~~e~r~~lk~~~p~~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~y 283 (297)
++||||+|||+||++++|.+++..|| .+|+++||++|++|+++||++|+++|++++++|+++|++|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999988877 7999999999999999999999999999999999999998
No 36
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.80 E-value=7.3e-20 Score=139.29 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=69.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022436 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 288 (297)
Q Consensus 213 dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~ 288 (297)
.+++||||+|||+||++++|..++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|+-..+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~ 79 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPR 79 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCc
Confidence 46789999999999999999999999999 99999999999999999999999999999999999999999986543
No 37
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=9.3e-20 Score=137.34 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022436 215 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 288 (297)
Q Consensus 215 ~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~ 288 (297)
++||||+|||+||++++|.+++.++|+ ++.+|+++||++|++|+++||++|+++|++++++|.+++++|+-..+
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Pr 75 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPR 75 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCC
Confidence 589999999999999999999999999 99999999999999999999999999999999999999999986543
No 38
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=1.6e-19 Score=138.49 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=70.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022436 215 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 287 (297)
Q Consensus 215 ~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~ 287 (297)
++||||+|||+||++++|..++.+||+ ++.+|+++||++|++|+++||++|+++|+.++++|.++|++|+...
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD 74 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCC
Confidence 479999999999999999999999999 9999999999999999999999999999999999999999998543
No 39
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=1.2e-19 Score=137.68 Aligned_cols=75 Identities=13% Similarity=0.336 Sum_probs=68.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022436 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 288 (297)
Q Consensus 214 p~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~ 288 (297)
+++||||+|||+||++++|.+++.++|+ ++.+|+++||++|++|+++||++|+++|++++++|.+++++|+-..+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr 77 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPR 77 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccC
Confidence 4789999999999999999999999999 99999999999999999999999999999999999999999987654
No 40
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7e-19 Score=151.46 Aligned_cols=77 Identities=27% Similarity=0.556 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022436 210 RRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 286 (297)
Q Consensus 210 ~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~ 286 (297)
+.+||++||||+|||+||++++|.+++.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.++|++|+++
T Consensus 95 ~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 95 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp SCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999999999999 999999999999999999999999999999999999999999875
No 41
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=1.7e-18 Score=137.02 Aligned_cols=78 Identities=21% Similarity=0.372 Sum_probs=69.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 022436 212 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLR 290 (297)
Q Consensus 212 ~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~~~ 290 (297)
....+||||+|||+|||++++. ..++++ ++.||+++||++|+.|+++||++|+++|++++++|+++|++|++.+...
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 3457899999999999999975 345566 7899999999999999999999999999999999999999999987654
Q ss_pred c
Q 022436 291 Q 291 (297)
Q Consensus 291 ~ 291 (297)
+
T Consensus 82 ~ 82 (101)
T 1v63_A 82 D 82 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=146.52 Aligned_cols=81 Identities=31% Similarity=0.573 Sum_probs=76.4
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 022436 206 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKE 282 (297)
Q Consensus 206 k~~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~---~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~ 282 (297)
++++.++||++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|+.|+++||++|+++|+.++++|.++|.+
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677899999999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred HHHh
Q 022436 283 YKER 286 (297)
Q Consensus 283 yk~~ 286 (297)
|...
T Consensus 85 y~~~ 88 (173)
T 2yrq_A 85 YIPP 88 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 9763
No 43
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.71 E-value=9.6e-18 Score=151.70 Aligned_cols=80 Identities=26% Similarity=0.415 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022436 210 RRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 288 (297)
Q Consensus 210 ~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~ 288 (297)
...||++||||+|||+|||+++|.+++.+||+ ++.||+++||++|+.|+++||++|+++|.+++++|+++|.+|.+...
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~ 114 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 114 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 36789999999999999999999999999999 99999999999999999999999999999999999999999986554
Q ss_pred c
Q 022436 289 L 289 (297)
Q Consensus 289 ~ 289 (297)
+
T Consensus 115 p 115 (238)
T 3tmm_A 115 P 115 (238)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=127.39 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=59.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C-HHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 022436 212 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R-EREFTKMIGESWTNLSPEERKVYQNIGLKDK 273 (297)
Q Consensus 212 ~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~-~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dk 273 (297)
.++++||||+|||+||++++|.+|+.+||+ + +.||+++||++|+.|+++||++|+++|++|.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999 7 9999999999999999999999999999884
No 45
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.69 E-value=3.3e-18 Score=152.41 Aligned_cols=77 Identities=34% Similarity=0.552 Sum_probs=72.0
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022436 208 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 287 (297)
Q Consensus 208 ~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~ 287 (297)
++..+||++||||+|||+|||+++|.+++.++| .+|+++||++|++|+++||++|+++|.+++++|.++|++|++++
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 182 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 182 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344679999999999999999999999987776 59999999999999999999999999999999999999999986
No 46
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=129.87 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHH---HHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 022436 211 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMI---GESWTNLSPEERKVYQNIGLKDKERYNRELK 281 (297)
Q Consensus 211 ~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l---~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~ 281 (297)
..++++||||+|||+||++++|.+|+.+ + ++.||+++| |++|+.|+++||++|+++|+++|++|.+++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 5678899999999999999999999998 6 899999999 9999999999999999999999999998863
No 47
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=144.90 Aligned_cols=77 Identities=27% Similarity=0.447 Sum_probs=73.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022436 213 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 289 (297)
Q Consensus 213 dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~~~ 289 (297)
+|++||||+|||+|||+++|.+++.+||+ ++.||+++||++|+.|+++||++|+++|..++++|.++|.+|.+...+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 46789999999999999999999999999 999999999999999999999999999999999999999999875543
No 48
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.5e-18 Score=154.60 Aligned_cols=77 Identities=34% Similarity=0.552 Sum_probs=72.1
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022436 208 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 287 (297)
Q Consensus 208 ~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~~ 287 (297)
++..+||++||||+|||+|||+++|.+++.+|| .+|+++||++|++|+++||++|+++|++++++|+++|++|++++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~ 214 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 214 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH---HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345689999999999999999999999987776 59999999999999999999999999999999999999999986
No 49
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-18 Score=132.28 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=63.1
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 022436 208 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRE 279 (297)
Q Consensus 208 ~~~~~dp~~PKrP~saY~lF~~e~r~~lk~~~p~-~--~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e 279 (297)
.+..+||++||||+|||+|||+++|.+|+.+||+ + +.+|+ ++|++|+++||++|+++|+++|++|+.+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4456699999999999999999999999999999 7 88888 9999999999999999999999999754
No 50
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.56 E-value=4.7e-15 Score=125.61 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=70.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022436 214 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 286 (297)
Q Consensus 214 p~~PKrP~saY~lF~~e~r~~lk~~~p~-~~~eisk~l~~~Wk~Ls~~eK~~Y~e~a~~dke~y~~e~~~yk~~ 286 (297)
+++||||+|||++|+.+.+.+|+.+||+ ++.+|+++||++|+.|+++||++|+++|..++++|..+|++|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 6789999999999999999999999999 999999999999999999999999999999999999999999653
No 51
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=77.70 E-value=1.8 Score=28.71 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=27.2
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~ 116 (297)
.|...|...| .+.|..||..|+- . ...+.+..|..+|.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~~--R---t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLKG--R---IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTSTT--C---CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcCC--C---CHHHHHHHHHHHcCc
Confidence 3556677666 2469999999842 1 233789999999854
No 52
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=77.62 E-value=2.5 Score=29.86 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=29.7
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~ 116 (297)
.|...|...| .+.|..||..|+|... .+.+++..|..+|.+
T Consensus 20 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYG-------EGNWSKILLHYKFNNR---TSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHC-------SSCHHHHHHHSCCSSC---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHC-------CCcHHHHHHHcCcCCC---CHHHHHHHHHHHcCC
Confidence 4666777776 2479999999986422 234899999998865
No 53
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.56 E-value=2.4 Score=29.97 Aligned_cols=39 Identities=10% Similarity=0.306 Sum_probs=28.1
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~ 116 (297)
.|...|...| .+.|..||..|+- -...+.+..|..+|.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~-----Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR-----KSAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT-----CCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC-----CCHHHHHHHHHHHcCC
Confidence 4666777777 2579999999861 1233789999998864
No 54
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=74.99 E-value=2.6 Score=27.88 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=27.0
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~ 116 (297)
.|...|...|. +.|..||..|+- . ...+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~~--R---t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLPN--R---TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT--C---CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcCC--C---CHHHHHHHHHHHcCc
Confidence 35566666662 479999999742 1 233789999998854
No 55
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=71.30 E-value=4.8 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=27.5
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhh
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLL 114 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L 114 (297)
.|...|...| .+.|..|+..|++..- .+.+++..|..+|
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNNR---TSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCCC---CHHHHHHHHHHHH
Confidence 4666777777 2479999999986422 2337888888876
No 56
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=70.73 E-value=3.8 Score=27.91 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=27.0
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~ 116 (297)
.|...|...| .+.|..||..|.- . ...+.+..|..+|.+
T Consensus 18 ~L~~~v~~~G-------~~~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFG-------QQDWKFLASHFPN--R---TDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTC-------TTCHHHHHHHCSS--S---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhC-------CCCHHHHHHHccC--C---CHHHHHHHHHHHcCC
Confidence 3556666666 2479999999742 1 233789999998854
No 57
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=68.56 E-value=3.7 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=26.2
Q ss_pred hHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 67 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
|-..|...|- +.|..||..|+- - ...+.+.+|.++|.
T Consensus 19 L~~~v~~~G~-------~~W~~Ia~~~~~---R--t~~qcr~r~~~~l~ 55 (60)
T 1x41_A 19 LLEAVMDCGF-------GNWQDVANQMCT---K--TKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHTCT-------TCHHHHHHHHTT---S--CHHHHHHHHHHHTT
T ss_pred HHHHHHHHCc-------CcHHHHHHHhCC---C--CHHHHHHHHHHHcc
Confidence 5556666662 479999999953 1 23378999998885
No 58
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=66.04 E-value=6.3 Score=26.83 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=27.3
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
.|...|...| .+.|..||..|+...+ +.+.+.+|.+++.
T Consensus 19 ~L~~~v~~~G-------~~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG-------LGNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT-------TTCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 4667777776 2479999999974322 2367888887764
No 59
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=61.01 E-value=9.5 Score=26.60 Aligned_cols=40 Identities=13% Similarity=0.330 Sum_probs=28.0
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
.|...|...|. +.|..|+..+.|..-. +.+++.-|..+|.
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~Rt---~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNRT---AVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCCC---HHHHHHHHHHHhc
Confidence 46667777762 3699999998775332 3378888887764
No 60
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.83 E-value=13 Score=26.26 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=29.9
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~yE 118 (297)
.|...|...|.-. +..+.|..||..|+-- ...+.+.+|.+||.+-.
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~R-----t~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGNR-----TAKQVASQVQKYFIKLT 63 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSSS-----CHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCCC-----CHHHHHHHHHHHHHHHH
Confidence 3555666666211 1125799999998631 22378999999987644
No 61
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=55.13 E-value=8.5 Score=22.04 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=5.8
Q ss_pred CCCCCCCCCCC
Q 022436 210 RRGDPSYPKPN 220 (297)
Q Consensus 210 ~~~dp~~PKrP 220 (297)
-..|..+||+-
T Consensus 14 wdddddppkkr 24 (28)
T 3ukx_C 14 WDDDDDPPKKR 24 (28)
T ss_dssp CCCSSSCCSCC
T ss_pred cccCCCchhhh
Confidence 33455666653
No 62
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.75 E-value=17 Score=25.01 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=26.5
Q ss_pred hHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHh
Q 022436 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (297)
Q Consensus 67 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~yE~ 119 (297)
|...|...| +.|..||..+| . ...+.+.+|..+|.+--.
T Consensus 20 L~~~~~~~g--------~~W~~Ia~~~g---R---t~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 20 LLHLAKLMP--------TQWRTIAPIIG---R---TAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp HHHHHHHCT--------TCHHHHHHHHS---S---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--------CCHHHHhcccC---c---CHHHHHHHHHHHhChHhc
Confidence 444555555 27999999444 1 233889999999987544
No 63
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=52.76 E-value=14 Score=26.05 Aligned_cols=41 Identities=5% Similarity=0.141 Sum_probs=28.7
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHh
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~yE~ 119 (297)
.|...|...|- .|..||..|+-- ...+++.+|..||.....
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~R-----t~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGSR-----TVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSSS-----CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHh
Confidence 35556666663 799999987432 123899999999887655
No 64
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=51.24 E-value=12 Score=28.43 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=26.9
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~ 116 (297)
.|-..|...|. +.|..||..|+. - .+.+.+..|.++|.+
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~---R--t~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMIT---R--NPRQCRERWNNYINP 49 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTT---S--CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCC---C--CHHHHHHHHHHHHcc
Confidence 46677777774 479999999862 1 233677788877753
No 65
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=47.85 E-value=15 Score=26.68 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=23.8
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHh
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~ 113 (297)
.|...|...| +.|..||..++- - ...+.+.+|.++
T Consensus 28 ~Ll~~v~~~G--------~~W~~IA~~v~~---R--T~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYK--------DDWNKVSEHVGS---R--TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSS--------SCHHHHHHHHSS---C--CHHHHHHHHTTS
T ss_pred HHHHHHHHhC--------CCHHHHHHHcCC---C--CHHHHHHHHHHh
Confidence 3556677777 479999999973 1 123677777665
No 66
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=44.57 E-value=15 Score=27.55 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=26.1
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
.|...|...|. +.|..||..|+ +- .+.+.+..|.++|.
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~---~R--t~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLK---GR--IGKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST---TC--CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhc---CC--CHHHHHHHHHhccC
Confidence 46667777774 46999999883 21 23367888888774
No 67
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=42.87 E-value=20 Score=27.27 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhh---ccccchHHHHhhhc
Q 022436 35 IVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKV---VAEKKWREVGAVFK 94 (297)
Q Consensus 35 ~~F~~~L~~f~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V---~~~~~W~~Va~~lg 94 (297)
..|+..|..++.+||..++ .-||..+|..|.+..=.-.+ ..-+.|..|++.|.
T Consensus 9 q~fi~~lk~lLk~RgIkVk-------k~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~ 64 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKVK-------YADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_pred hHHHHHHHHHHHHcCeeec-------HHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHH
Confidence 7899999999999999873 35788899998774322211 22358999998875
No 68
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=39.85 E-value=60 Score=25.81 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhh---ccccchHHHHhhhc
Q 022436 33 DPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKV---VAEKKWREVGAVFK 94 (297)
Q Consensus 33 ~~~~F~~~L~~f~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V---~~~~~W~~Va~~lg 94 (297)
..+.|+..|+.++.++|..++ .=||-.+|..|.+..=.-.. ..-..|..|++.|.
T Consensus 6 ~~~~fi~~Lk~~LK~rGvkV~-------~k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~ 63 (124)
T 2lpy_A 6 QHERYVEQLKQALKTRGVKVK-------YADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 63 (124)
T ss_dssp HHHHHHHHHHHHHHTTTCCCC-------HHHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCeeec-------HHHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHH
Confidence 467999999999999999973 35788888888753211111 23458999998883
No 69
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=38.70 E-value=19 Score=30.93 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.7
Q ss_pred CC-CHHHHHHH-HHHHhhcCChHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 022436 240 PN-REREFTKM-IGESWTNLSPEERKVYQNIGLK-DKERYNRELKEYKE 285 (297)
Q Consensus 240 p~-~~~eisk~-l~~~Wk~Ls~~eK~~Y~e~a~~-dke~y~~e~~~yk~ 285 (297)
|- ++..+++. +|..|+.+++++|+.|.+.... ...-|-..+..|..
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 44 67777655 4899999999999999986665 55668888988875
No 70
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=35.83 E-value=30 Score=26.93 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=27.0
Q ss_pred hhhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 65 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
-.|-..|...|. +.|..||..|+- - .+.+.+..|..+|.
T Consensus 36 ~~L~~~v~~~g~-------~~W~~Ia~~l~~---R--t~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 36 QRVIEHVQKYGP-------KRWSDIAKHLKG---R--IGKQCRERWHNHLN 74 (128)
T ss_dssp HHHHHHHHHTCS-------CCHHHHHHHSSS---C--CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhcC---C--cHHHHHHHHHHhcc
Confidence 356667777774 469999999842 1 23378888888775
No 71
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.43 E-value=40 Score=22.67 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCCeeCC
Q 022436 32 KDPIVFWDTLRRFHFIMGTKFMIPVIGG 59 (297)
Q Consensus 32 ~~~~~F~~~L~~f~~~~G~~~~~P~i~g 59 (297)
-.++..+++|+.|+.+.|+-+.-|.+.+
T Consensus 29 g~REElvdRLk~Y~~QtGi~lnkP~~~~ 56 (58)
T 2do5_A 29 GNREELVERLQSYTRQTGIVLNRPSGPS 56 (58)
T ss_dssp SCHHHHHHHHHHHHHHHCCCCCCTTCSC
T ss_pred ccHHHHHHHHHHHhhccceeecCCCCCC
Confidence 4689999999999999999987666544
No 72
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=33.10 E-value=46 Score=25.01 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=28.0
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~yE 118 (297)
.|...|...| +.|..||..|. .. ....++..|..++..-.
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l~--gR---t~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFLK--NR---SDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHHS--SS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------cCHHHHHHHCC--CC---CHHHHHHHHHHHHhhHH
Confidence 4666777777 37999999873 22 22378999988876644
No 73
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=29.98 E-value=62 Score=22.98 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=20.1
Q ss_pred ccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022436 83 EKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (297)
Q Consensus 83 ~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~ 116 (297)
.++|..||..|| . ....++++|..++..
T Consensus 31 ~~RW~~IA~~lg--R----t~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 31 PGRWEKIAHELG--R----SVTDVTTKAKQLKDS 58 (72)
T ss_dssp TTHHHHHHHHHT--S----CHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHhC--C----CHHHHHHHHHHHHHh
Confidence 367999999996 1 223788888877544
No 74
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=29.84 E-value=75 Score=23.11 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=27.2
Q ss_pred HHHHHHHHhhCCC---CHHHHHHHHHHHhhcCChHHHHHH
Q 022436 229 AEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERKVY 265 (297)
Q Consensus 229 ~e~r~~lk~~~p~---~~~eisk~l~~~Wk~Ls~~eK~~Y 265 (297)
+..|...+.-||+ ...+..+.|.+.|..|++.++..-
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 66 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 4455567778898 356788899999999998765443
No 75
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=27.91 E-value=62 Score=22.01 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=29.6
Q ss_pred hhHHHHHhcCcc-hhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 66 VLYVEATTRGGY-EKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 66 ~Ly~~V~~~GG~-~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
.|+.-|...... ..|+.+..|.++++.. ++... -...|..|.++|.
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~-~~~Ht---wqSwRdRy~k~l~ 58 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSS-LTQHS---WQSLKDRYLKHLR 58 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSC-SSSCC---SHHHHHHHHHHTC
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhH-CCCCC---HHHHHHHHHHHcc
Confidence 456666555211 3688889999999832 34322 2269999999873
No 76
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.03 E-value=37 Score=24.27 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=19.9
Q ss_pred ccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 83 EKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 83 ~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
.+.|..||..|+- . .....+.+|..++.
T Consensus 41 ~~rW~~IA~~vpG---R--T~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 41 SDCWDKIARCVPS---K--SKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHGGGCSS---S--CHHHHHHHHHHHHS
T ss_pred CchHHHHHHHcCC---C--CHHHHHHHHHHHHH
Confidence 3589999999963 1 12378888887754
No 77
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=26.04 E-value=33 Score=24.92 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.1
Q ss_pred CChhHHHHHHHHHHhhc
Q 022436 32 KDPIVFWDTLRRFHFIM 48 (297)
Q Consensus 32 ~~~~~F~~~L~~f~~~~ 48 (297)
-+-+.||++|+.|+.+|
T Consensus 37 l~TeeFW~DL~gFL~qR 53 (75)
T 2lo0_A 37 VATEAFWDDLQGFLEQR 53 (75)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh
Confidence 46789999999999986
No 78
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=25.02 E-value=44 Score=26.11 Aligned_cols=38 Identities=8% Similarity=0.301 Sum_probs=26.8
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~ 116 (297)
.|...|...|+ .|..||..|+ .. ....++..|..+|..
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~--gR---t~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP--GR---TDNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST--TC---CHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC--CC---CHHHHHHHHHHHHHH
Confidence 46667777774 6999999764 22 223789999888754
No 79
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=30.58 E-value=16 Score=27.13 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=20.5
Q ss_pred chHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHH
Q 022436 85 KWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118 (297)
Q Consensus 85 ~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~~yE 118 (297)
.|..||..|+-- + ..+++.+|..+|..+.
T Consensus 37 ~W~~IA~~l~gR--t---~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 37 NWSAIARMVGSK--T---VSQCKNFYFNYKKRQN 65 (89)
Confidence 599999997532 1 2278888988886653
No 80
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=24.24 E-value=57 Score=25.34 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=25.0
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
.|-..|...|. .|..||..|+- . .+.+.+..|.++|.
T Consensus 21 ~L~~~v~~~G~--------~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 21 MLKRAVAQHGS--------DWKMIAATFPN--R---NARQCRDRWKNYLA 57 (126)
T ss_dssp HHHHHHHHHTT--------CHHHHHHTCTT--C---CHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCC--------CHHHHHHHcCC--C---CHHHHHHHHhhhcc
Confidence 45666766663 59999998742 1 22377888888874
No 81
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=23.27 E-value=1e+02 Score=21.12 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=25.2
Q ss_pred HHHHHHHHhhCCC---CHHHHHHHHHHHhhcCChHHHH
Q 022436 229 AEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERK 263 (297)
Q Consensus 229 ~e~r~~lk~~~p~---~~~eisk~l~~~Wk~Ls~~eK~ 263 (297)
+..|...+.-||+ ...+..+.|.+.|..|++.++.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 3445556777898 2357788899999999876654
No 82
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=22.11 E-value=1e+02 Score=22.49 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=26.1
Q ss_pred hHHHHHhcCcchhhccccchHHHHhhhc--CCCCCCcHHHHHHHHHHHhhH
Q 022436 67 LYVEATTRGGYEKVVAEKKWREVGAVFK--FSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 67 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg--~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
|-..|...|. +.|..|+.... |+..+ ...||..|..+|.
T Consensus 11 L~~gv~k~G~-------g~W~~I~~~~~~~~~~RT---~~~lKdrWrnllk 51 (83)
T 2ckx_A 11 LVEAVEHLGT-------GRWRDVKMRAFDNADHRT---YVDLKDKWKTLVH 51 (83)
T ss_dssp HHHHHHHHCS-------SCHHHHHHHHCTTCTTSC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-------CCcHHHHHhhccccCCCC---HHHHHHHHHHHHH
Confidence 5556666663 58999999744 34322 3379999988775
No 83
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.66 E-value=1.5e+02 Score=21.75 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCCC-C-----HHHHHHHHHHHhhcCChHHHHHHHH
Q 022436 229 AEKHYKLKSLYPN-R-----EREFTKMIGESWTNLSPEERKVYQN 267 (297)
Q Consensus 229 ~e~r~~lk~~~p~-~-----~~eisk~l~~~Wk~Ls~~eK~~Y~e 267 (297)
+..|...+.-||+ . ..+..+.|.+.|..|++.++..-.+
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4445566778888 3 2568889999999999877644333
No 84
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=20.56 E-value=73 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=26.0
Q ss_pred hhHHHHHhcCcchhhccccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022436 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (297)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~t~~s~~Lk~~Y~k~L~ 115 (297)
.|...|...|. +.|..||..|. .. ...+.+..|..+|.
T Consensus 68 ~L~~~v~~~g~-------~~W~~Ia~~l~--~R---t~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 68 RVIKLVQKYGP-------KRWSVIAKHLK--GR---IGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHHHHHCS-------CCHHHHHHTST--TC---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCc-------ccHHHHHHHcC--CC---CHHHHHHHHHHHhC
Confidence 46666777774 46999999873 21 23378888888774
No 85
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=20.29 E-value=1.9e+02 Score=19.87 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCCC-C----HHHHHHHHHHHhhcCChHHHHH
Q 022436 229 AEKHYKLKSLYPN-R----EREFTKMIGESWTNLSPEERKV 264 (297)
Q Consensus 229 ~e~r~~lk~~~p~-~----~~eisk~l~~~Wk~Ls~~eK~~ 264 (297)
+..|...+.-||+ . ..+..+.|.+.|..|++.++..
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 3345556667887 2 3578889999999998876543
Done!