Query 022437
Match_columns 297
No_of_seqs 113 out of 139
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pk2_A Cyclin-T1, protein TAT; 93.1 0.0093 3.2E-07 56.3 -1.7 9 31-39 246-254 (358)
2 3hht_A NitrIle hydratase alpha 77.2 1.4 5E-05 39.8 3.1 44 117-160 36-87 (216)
3 3qyh_A CO-type nitrIle hydrata 76.4 1 3.5E-05 41.0 1.9 44 117-160 47-98 (226)
4 1ugp_A NitrIle hydratase alpha 64.9 2.8 9.7E-05 37.6 2.1 44 117-160 27-78 (203)
5 3a8g_A NitrIle hydratase subun 62.4 1.9 6.5E-05 38.8 0.5 44 117-160 30-81 (207)
6 4fm4_A NitrIle hydratase alpha 55.3 3.6 0.00012 37.1 1.0 43 118-160 21-71 (209)
7 2zzd_C Thiocyanate hydrolase s 50.9 6.3 0.00022 36.2 1.9 44 117-160 38-88 (243)
8 2l6f_A Focal adhesion kinase 1 46.5 5.9 0.0002 35.9 0.0 7 95-101 205-211 (215)
9 2l6f_A Focal adhesion kinase 1 30.5 16 0.00054 33.1 0.0 13 88-100 201-213 (215)
10 2da3_A Alpha-fetoprotein enhan 21.2 1.9E+02 0.0065 20.5 5.4 39 95-133 27-66 (80)
No 1
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=93.10 E-value=0.0093 Score=56.32 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=3.8
Q ss_pred ccCCCCCcc
Q 022437 31 TRQIPNPHL 39 (297)
Q Consensus 31 ~~~~~~~~~ 39 (297)
.+.+..++.
T Consensus 246 ~~~~~~L~~ 254 (358)
T 2pk2_A 246 EKTPNRLKR 254 (358)
T ss_dssp TTCTTHHHH
T ss_pred HhCcccccc
Confidence 344444333
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=77.22 E-value=1.4 Score=39.84 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=33.4
Q ss_pred HHHcCCCCHHHHHHHHhc-c--cchhh--Hhhhh---ccchhhhhccchhhh
Q 022437 117 AIEAGRVPAAIVKRYLEL-E--KSPVF--RWLLN---FGGFRERLLADDLFL 160 (297)
Q Consensus 117 A~e~G~Vs~~~L~rfl~l-~--~~p~~--~~l~r---f~gfR~RlLADP~FL 160 (297)
-+|.|.|+++.+.++.+. + ..|.. +.+.| -+.||+|||+||.=.
T Consensus 36 l~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aA 87 (216)
T 3hht_A 36 LIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETV 87 (216)
T ss_dssp HHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHH
Confidence 468999999999999986 2 24642 23333 599999999999755
No 3
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=76.45 E-value=1 Score=41.03 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=33.4
Q ss_pred HHHcCCCCHHHHHHHHh-ccc--chhh--Hhhhh---ccchhhhhccchhhh
Q 022437 117 AIEAGRVPAAIVKRYLE-LEK--SPVF--RWLLN---FGGFRERLLADDLFL 160 (297)
Q Consensus 117 A~e~G~Vs~~~L~rfl~-l~~--~p~~--~~l~r---f~gfR~RlLADP~FL 160 (297)
-+|.|.|+++.+.++.+ ++. .|.. +.+.| -|+||.|||+||.=.
T Consensus 47 L~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~aA 98 (226)
T 3qyh_A 47 LIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAG 98 (226)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHHHH
Confidence 46899999999999998 433 4642 23333 599999999999855
No 4
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=64.87 E-value=2.8 Score=37.60 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=32.6
Q ss_pred HHHcCCCCHHHHHHHHhccc---chhh--Hhhhh---ccchhhhhccchhhh
Q 022437 117 AIEAGRVPAAIVKRYLELEK---SPVF--RWLLN---FGGFRERLLADDLFL 160 (297)
Q Consensus 117 A~e~G~Vs~~~L~rfl~l~~---~p~~--~~l~r---f~gfR~RlLADP~FL 160 (297)
-+|.|.|+++.+.++.+.-. .|.. +.+.| -|.||+|||+|+.=.
T Consensus 27 L~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aA 78 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEA 78 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHHH
Confidence 46899999999999988633 3431 23323 599999999999754
No 5
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=62.43 E-value=1.9 Score=38.84 Aligned_cols=44 Identities=25% Similarity=0.226 Sum_probs=32.4
Q ss_pred HHHcCCCCHHHHHHHHhccc---chhh--Hhhhh---ccchhhhhccchhhh
Q 022437 117 AIEAGRVPAAIVKRYLELEK---SPVF--RWLLN---FGGFRERLLADDLFL 160 (297)
Q Consensus 117 A~e~G~Vs~~~L~rfl~l~~---~p~~--~~l~r---f~gfR~RlLADP~FL 160 (297)
-+|.|.|+++.+.++.+.-. .|.. +.+.| -|.||.|||+|+.=.
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~aA 81 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAA 81 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHHH
Confidence 46889999999999988533 3431 23333 499999999999755
No 6
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=55.31 E-value=3.6 Score=37.11 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=31.4
Q ss_pred HHcCCCCHHHHHHHHhc-cc--chh--hHhhhh---ccchhhhhccchhhh
Q 022437 118 IEAGRVPAAIVKRYLEL-EK--SPV--FRWLLN---FGGFRERLLADDLFL 160 (297)
Q Consensus 118 ~e~G~Vs~~~L~rfl~l-~~--~p~--~~~l~r---f~gfR~RlLADP~FL 160 (297)
+|.|+|+++.+..|.+. +. .|. .+.+.| -+.||+|||+|+.=-
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~aa 71 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGVAA 71 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHHHH
Confidence 57899999999999983 32 354 223333 499999999999744
No 7
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=50.90 E-value=6.3 Score=36.23 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.6
Q ss_pred HHHcCCCCHHHHHHHHhc-cc-chh--hHhhhh---ccchhhhhccchhhh
Q 022437 117 AIEAGRVPAAIVKRYLEL-EK-SPV--FRWLLN---FGGFRERLLADDLFL 160 (297)
Q Consensus 117 A~e~G~Vs~~~L~rfl~l-~~-~p~--~~~l~r---f~gfR~RlLADP~FL 160 (297)
.+|.|.|+++.+.++.+. +. .|. .+.+.| -|.||+|||+|..=.
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~aa 88 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEA 88 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChHHH
Confidence 468999999999999885 22 353 223333 499999999998754
No 8
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=46.52 E-value=5.9 Score=35.86 Aligned_cols=7 Identities=29% Similarity=-0.059 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 022437 95 EAIFALA 101 (297)
Q Consensus 95 ei~~Vl~ 101 (297)
|.++.|+
T Consensus 205 ~~~~~~~ 211 (215)
T 2l6f_A 205 ELDELMA 211 (215)
Confidence 4444443
No 9
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=30.48 E-value=16 Score=33.13 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=6.3
Q ss_pred CCCCCHHHHHHHH
Q 022437 88 AGFHNCTEAIFAL 100 (297)
Q Consensus 88 ~~~~~r~ei~~Vl 100 (297)
..+++-.|..+-|
T Consensus 201 ~~~~~~~~~~~~~ 213 (215)
T 2l6f_A 201 SATRELDELMASL 213 (215)
Confidence 4455555555443
No 10
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.20 E-value=1.9e+02 Score=20.53 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=21.7
Q ss_pred HHHHHHHHhccccCCchH-HHHHHHHcCCCCHHHHHHHHh
Q 022437 95 EAIFALAKAGRTLGDLPK-DLAGAIEAGRVPAAIVKRYLE 133 (297)
Q Consensus 95 ei~~Vl~e~gr~~~sLP~-Dl~~A~e~G~Vs~~~L~rfl~ 133 (297)
+-..+|.+++..-.-... +..+-++.=.++..+++.||.
T Consensus 27 ~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFq 66 (80)
T 2da3_A 27 EQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQ 66 (80)
T ss_dssp TTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhH
Confidence 445667777765444333 233333444578888777763
Done!