Query 022438
Match_columns 297
No_of_seqs 217 out of 1573
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:29:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vou_A ION transport 2 domain 39.1 96 0.0033 24.9 7.3 15 182-196 129-143 (148)
2 1v54_D Cytochrome C oxidase su 32.8 41 0.0014 28.3 4.0 61 161-221 31-103 (147)
3 3blc_A Inner membrane protein 31.7 1.1 3.9E-05 41.6 -6.4 23 99-121 304-326 (330)
4 1e91_A Paired amphipathic heli 30.7 57 0.002 24.5 4.2 30 166-195 13-44 (85)
5 2cr7_A Paired amphipathic heli 27.8 56 0.0019 24.3 3.6 30 166-195 16-47 (80)
6 2y69_D Cytochrome C oxidase su 25.7 57 0.002 28.0 3.8 60 162-221 54-125 (169)
7 1g1e_B SIN3A; four-helix bundl 25.0 70 0.0024 24.2 3.8 27 166-192 16-44 (89)
8 2czy_A Paired amphipathic heli 24.8 74 0.0025 23.4 3.8 30 166-195 10-41 (77)
9 3mq7_A Bone marrow stromal ant 21.1 1.8E+02 0.0062 23.6 5.6 24 153-176 66-89 (121)
10 2f05_A Paired amphipathic heli 19.9 85 0.0029 24.6 3.4 31 166-196 13-45 (105)
No 1
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=39.13 E-value=96 Score=24.85 Aligned_cols=15 Identities=0% Similarity=-0.139 Sum_probs=8.3
Q ss_pred HHHHHHHHHHcCCCC
Q 022438 182 QLETSRLYRQAGVNP 196 (297)
Q Consensus 182 q~E~~~LyKk~gvnP 196 (297)
.+++.+..++++.++
T Consensus 129 l~~i~~~~~~~~~~~ 143 (148)
T 3vou_A 129 LEAIEKKLAEHSRQG 143 (148)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcCCCc
Confidence 345566666776653
No 2
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=32.78 E-value=41 Score=28.26 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=37.0
Q ss_pred HhccHHHHHHHHHhhcCHHHH-HHHHHHHHHH-c---------CCCCCcchH-HHHHHHHHHHHHHHHHHhhh
Q 022438 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYRQ-A---------GVNPLAGCL-PTLATIPVWIGLYQALSNVA 221 (297)
Q Consensus 161 ~~lqPel~~Iqekyk~D~q~~-q~E~~~LyKk-~---------gvnPl~gcL-p~LiQiPIfi~lf~~Lr~m~ 221 (297)
+++.|++.+|++|.|+|-.++ .+|.+.+|+- + +-.-++.++ -+++-+-+-+.+|..+|..+
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~p~gewK~v~g~v~~~i~~s~~~f~~~r~~v 103 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYV 103 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356899999999999986554 3456667762 1 222234333 23444455666666677653
No 3
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=31.70 E-value=1.1 Score=41.58 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=17.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHHh
Q 022438 99 KNGGWFGFISEAMEFVLKILKDG 121 (297)
Q Consensus 99 ~~gGw~~~i~~p~~~vL~~lh~~ 121 (297)
-++||+.+|+.||-++|+++|+.
T Consensus 304 VDyGW~~fiakPlF~lL~~l~~~ 326 (330)
T 3blc_A 304 VDYGWLWFISQPLLVPRGSLEHH 326 (330)
T ss_dssp HHHHHHHHHTSCCCCCCCC----
T ss_pred ecccCHHHHHHHHHHHHHHhhhh
Confidence 46899999999999999999863
No 4
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=30.68 E-value=57 Score=24.50 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 022438 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (297)
Q Consensus 166 el~~Iqekyk~D~q~~q--~E~~~LyKk~gvn 195 (297)
-++++|+++.++++..+ .++++-||+..++
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d 44 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLH 44 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHcccc
Confidence 46889999999888665 4788999998876
No 5
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=27.80 E-value=56 Score=24.27 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=21.2
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 022438 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (297)
Q Consensus 166 el~~Iqekyk~D~q~~q--~E~~~LyKk~gvn 195 (297)
-++++++++.++++..+ .++++-||+..++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 46788888888776554 4677777776654
No 6
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=25.73 E-value=57 Score=27.99 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=36.3
Q ss_pred hccHHHHHHHHHhhcCHHHH-HHHHHHHHH-Hc---------CCCCCcchH-HHHHHHHHHHHHHHHHHhhh
Q 022438 162 NLQPKIKAIQQRYAGNQERI-QLETSRLYR-QA---------GVNPLAGCL-PTLATIPVWIGLYQALSNVA 221 (297)
Q Consensus 162 ~lqPel~~Iqekyk~D~q~~-q~E~~~LyK-k~---------gvnPl~gcL-p~LiQiPIfi~lf~~Lr~m~ 221 (297)
++.|++++|+||.|+|-.++ .+|.+.+|+ .+ +-.-++.++ -+++-+-+-+.+|..+|...
T Consensus 54 ~~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~ptgEWK~V~ggv~~~i~~s~~~f~~~r~~v 125 (169)
T 2y69_D 54 NLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYV 125 (169)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56899999999999986554 355666776 11 122234333 23444455566666677653
No 7
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=25.02 E-value=70 Score=24.24 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHc
Q 022438 166 KIKAIQQRYAGNQERIQ--LETSRLYRQA 192 (297)
Q Consensus 166 el~~Iqekyk~D~q~~q--~E~~~LyKk~ 192 (297)
-++++|+|+.++++..+ .++++-|+++
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~ 44 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhc
Confidence 46788999988887655 3667777654
No 8
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=24.81 E-value=74 Score=23.39 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 022438 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (297)
Q Consensus 166 el~~Iqekyk~D~q~~q--~E~~~LyKk~gvn 195 (297)
-++++++++.++++..+ .++++-||+..++
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~ 41 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 41 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 46788889988777654 3677777776555
No 9
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.14 E-value=1.8e+02 Score=23.58 Aligned_cols=24 Identities=8% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHhhc
Q 022438 153 QVESTLAMQNLQPKIKAIQQRYAG 176 (297)
Q Consensus 153 q~rss~Km~~lqPel~~Iqekyk~ 176 (297)
.....+++++++-|++.++++.++
T Consensus 66 kaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 66 KAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467888999999998888776
No 10
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=19.85 E-value=85 Score=24.65 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 022438 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (297)
Q Consensus 166 el~~Iqekyk~D~q~~q--~E~~~LyKk~gvnP 196 (297)
-++++|+|+.++++..+ .++++-||+..++.
T Consensus 13 YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~ 45 (105)
T 2f05_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (105)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhccccc
Confidence 46889999999888665 47889999887764
Done!