Query 022438
Match_columns 297
No_of_seqs 217 out of 1573
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 05:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022438.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022438hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 46.4 11 0.00079 30.0 4.6 37 183-219 34-81 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 19.3 20 0.0014 28.1 1.6 61 161-221 28-100 (144)
3 d2e50a1 d.305.1.1 (A:1-222) Pr 17.8 71 0.0051 25.9 4.9 26 152-177 27-52 (222)
4 d1lvaa3 a.4.5.35 (A:511-574) C 16.8 37 0.0027 22.3 2.3 22 177-198 4-25 (64)
5 d2f05a1 a.59.1.1 (A:1-85) Sin3 15.9 59 0.0043 22.4 3.4 31 166-196 13-45 (85)
6 d1s5qb_ a.59.1.1 (B:) Sin3A {M 14.9 75 0.0055 22.0 3.8 27 166-192 16-44 (89)
7 d1ryka_ a.60.11.1 (A:) Hypothe 14.8 79 0.0058 21.2 3.8 28 167-194 40-67 (69)
8 d1qopb_ c.79.1.1 (B:) Tryptoph 14.3 66 0.0048 28.0 4.1 33 163-195 20-54 (390)
9 d1j8ba_ d.222.1.1 (A:) Hypothe 13.0 52 0.0038 23.1 2.4 20 157-176 5-24 (92)
10 d2cvba1 c.47.1.10 (A:2-188) Pr 12.2 58 0.0042 25.1 2.7 35 162-196 49-97 (187)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=46.39 E-value=11 Score=30.00 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.7
Q ss_pred HHHHHHHHH-cCCCCCcchHH----------HHHHHHHHHHHHHHHHh
Q 022438 183 LETSRLYRQ-AGVNPLAGCLP----------TLATIPVWIGLYQALSN 219 (297)
Q Consensus 183 ~E~~~LyKk-~gvnPl~gcLp----------~LiQiPIfi~lf~~Lr~ 219 (297)
+++.+|||| +|.+|-+|.+| .-++--+|+.+|+-+.+
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 467899988 99999898776 23688889999988865
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.33 E-value=20 Score=28.10 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=36.4
Q ss_pred HhccHHHHHHHHHhhcCHHHH-HHHHHHHHH--------HcCCCC--CcchH-HHHHHHHHHHHHHHHHHhhh
Q 022438 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYR--------QAGVNP--LAGCL-PTLATIPVWIGLYQALSNVA 221 (297)
Q Consensus 161 ~~lqPel~~Iqekyk~D~q~~-q~E~~~LyK--------k~gvnP--l~gcL-p~LiQiPIfi~lf~~Lr~m~ 221 (297)
+++-|++++|+||-|+|-.++ .+|.+.+|+ |....+ ++.++ ..++-+-+-+.+|..+|..+
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~~v 100 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYV 100 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578899999999999986554 356677777 222211 23333 23334444455666666543
No 3
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.77 E-value=71 Score=25.90 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhhcC
Q 022438 152 KQVESTLAMQNLQPKIKAIQQRYAGN 177 (297)
Q Consensus 152 ~q~rss~Km~~lqPel~~Iqekyk~D 177 (297)
.+++...+++.+|-++.++++++...
T Consensus 27 ~~~~~i~~L~~iQ~e~~~l~~e~~~e 52 (222)
T d2e50a1 27 EQQEAIEHIDEVQNEIDRLNEQASEE 52 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888776553
No 4
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=16.82 E-value=37 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCCc
Q 022438 177 NQERIQLETSRLYRQAGVNPLA 198 (297)
Q Consensus 177 D~q~~q~E~~~LyKk~gvnPl~ 198 (297)
|++++.+++.++|++.|..|..
T Consensus 4 ~q~~l~~~I~~~~~~~g~~PP~ 25 (64)
T d1lvaa3 4 TQKKLLKDLEDKYRVSRWQPPS 25 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCB
T ss_pred HHHHHHHHHHHHHHHcCCCCCc
Confidence 5677888999999999999843
No 5
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.89 E-value=59 Score=22.36 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCHHHHHH--HHHHHHHHcCCCC
Q 022438 166 KIKAIQQRYAGNQERIQL--ETSRLYRQAGVNP 196 (297)
Q Consensus 166 el~~Iqekyk~D~q~~q~--E~~~LyKk~gvnP 196 (297)
=++++++++.++++..++ ++++-|+++.++.
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~ 45 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhccc
Confidence 467889999888876653 6788888876653
No 6
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.86 E-value=75 Score=22.03 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHc
Q 022438 166 KIKAIQQRYAGNQERIQ--LETSRLYRQA 192 (297)
Q Consensus 166 el~~Iqekyk~D~q~~q--~E~~~LyKk~ 192 (297)
-++++|+++.+++++.+ .++++-|++.
T Consensus 16 yl~kVK~~f~d~p~~Y~~FL~il~~f~~~ 44 (89)
T d1s5qb_ 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 36788999988877655 3566667654
No 7
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=14.80 E-value=79 Score=21.15 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHcCC
Q 022438 167 IKAIQQRYAGNQERIQLETSRLYRQAGV 194 (297)
Q Consensus 167 l~~Iqekyk~D~q~~q~E~~~LyKk~gv 194 (297)
.-++|++|...++++++++.++.++|..
T Consensus 40 ~Gk~Q~~yG~~kd~a~~~v~~~~~r~~~ 67 (69)
T d1ryka_ 40 VGKIQERYGYQKDQAEKEVVDWETRNEY 67 (69)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCC
Confidence 3567889988888999999999888753
No 8
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=14.31 E-value=66 Score=27.97 Aligned_cols=33 Identities=12% Similarity=0.324 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHhhc--CHHHHHHHHHHHHHHcCCC
Q 022438 163 LQPKIKAIQQRYAG--NQERIQLETSRLYRQAGVN 195 (297)
Q Consensus 163 lqPel~~Iqekyk~--D~q~~q~E~~~LyKk~gvn 195 (297)
|+|-+++|.+.|.+ +.++.++|..++||.|--.
T Consensus 20 l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~gr 54 (390)
T d1qopb_ 20 LMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGR 54 (390)
T ss_dssp GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCC
Confidence 45555666555543 2244566777777776433
No 9
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=13.04 E-value=52 Score=23.07 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=15.0
Q ss_pred HHHHHhccHHHHHHHHHhhc
Q 022438 157 TLAMQNLQPKIKAIQQRYAG 176 (297)
Q Consensus 157 s~Km~~lqPel~~Iqekyk~ 176 (297)
+.+++++|.+|+++|+++++
T Consensus 5 mkqaq~mq~~m~~~q~eL~~ 24 (92)
T d1j8ba_ 5 MKQAQQMQEKMQKMQEEIAQ 24 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 35666778888888888863
No 10
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=12.19 E-value=58 Score=25.12 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=25.5
Q ss_pred hccHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHcCCCC
Q 022438 162 NLQPKIKAIQQRYAGN--------------QERIQLETSRLYRQAGVNP 196 (297)
Q Consensus 162 ~lqPel~~Iqekyk~D--------------~q~~q~E~~~LyKk~gvnP 196 (297)
...|+|++++++|+++ .+.-.+++++..+++|++.
T Consensus 49 ~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~ 97 (187)
T d2cvba1 49 GSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFF 97 (187)
T ss_dssp TTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCS
T ss_pred hhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcc
Confidence 4568899999999852 2234467788888998873
Done!