BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022439
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIES 66
GS W+ +++KAFE AL Y +D DRW +A V G++ EE+K+HYE+LV+D+ IES
Sbjct: 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65
Query: 67 GCVPLPSYNSS 77
G VP P+Y ++
Sbjct: 66 GKVPFPNYRTT 76
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 48.1 bits (113), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV 61
WT E+ K E AL +YP + +RW+KIA VPG++ ++ + Y+ LV+ V
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMV 55
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV 58
WT+ Q K E AL YP +SD W+KIA VP KS E+ Y+LLV
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56
GS W ++ AFE AL +D DRW+K+A V G++ EE+K+HYEL
Sbjct: 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168
+ WT +E LF GL K+G+ W IS+ + +RT QV S+A++YF
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 54
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 11 VWTKEQDKAFENALVSYP--EDASDRWEKIAADVPGKSLEEI 50
+WT E+ K E L+ YP E S RW+KIA ++ ++ +++
Sbjct: 10 LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQV 51
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 124 WTEDEHRLFLLGLDKYGKGD-----WRSISRNFVVTRTPTQVASHAQKYFIRLN 172
WT +E + L KY + W+ I+ + + RT QVAS QKYFI+L
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLT 63
>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
Domain In Human Cdna
Length = 72
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVN 62
WT+E ++V +P RWEKIA ++ G+S+ ++ + L D V
Sbjct: 11 WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT 60
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNF-VVTRTPTQV 160
WT +E G+ KYG+G+W +IS+N+ V RT +
Sbjct: 17 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 54
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNF-VVTRTPTQV 160
WT +E G+ KYG+G+W +IS+N+ V RT +
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 33.9 bits (76), Expect = 0.10, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNF-VVTRTPTQV 160
WT +E G+ KYG+G+W +IS+N+ V RT +
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNF-VVTRTPTQV 160
WT +E G+ KYG+G+W +IS+N+ V RT +
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNF-VVTRTPTQV 160
WT +E G+ KYG+G+W +IS+N+ V RT +
Sbjct: 13 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 50
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
EV +S WT+E+D+ A + +RW +IA +PG++ IK H+
Sbjct: 2 EVKKTS-WTEEEDRILYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHW 46
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWRSI 147
WT++E L+G+ KYG G W I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
WT+E+D+ A + +RW +IA +PG++ IK H+
Sbjct: 6 WTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHW 44
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWRSI 147
WT++E L+G+ KYG G W I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1, Nmr,
18 Structures
Length = 53
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 119 RKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDR 178
RK AW +E + G+ KYG+G+W I ++ K+ R + M KDR
Sbjct: 1 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--------------KFNNRTSVMLKDR 46
Query: 179 RRS 181
R+
Sbjct: 47 WRT 49
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
Length = 105
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
EV +S WT+E+D+ A + +RW +IA +PG++ IK H+
Sbjct: 53 EVKKTS-WTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHW 97
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
EV +S WT+E+D+ A + +RW +IA +PG++ IK H+
Sbjct: 53 EVKKTS-WTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHW 97
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
EV +S WT+E+D+ A + +RW +IA +PG++ IK H+
Sbjct: 107 EVKKTS-WTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAIKNHW 151
>pdb|2YQK|A Chain A, Solution Structure Of The Sant Domain In Arginine-Glutamic
Acid Dipeptide (Re) Repeats
Length = 63
Score = 28.5 bits (62), Expect = 4.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWR 145
WTEDE + F+ GL +YGK +R
Sbjct: 12 WTEDEVKRFVKGLRQYGKNFFR 33
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 28.1 bits (61), Expect = 5.7, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 119 RKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDR 178
RK AW +E + G+ KYG+G+W I ++ K+ R + M KDR
Sbjct: 9 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--------------KFNNRTSVMLKDR 54
Query: 179 RRS 181
R+
Sbjct: 55 WRT 57
>pdb|2NOG|A Chain A, Sant Domain Structure Of Xenopus Remodeling Factor Iswi
pdb|2NOG|B Chain B, Sant Domain Structure Of Xenopus Remodeling Factor Iswi
Length = 173
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSM 174
W + + F+ +K+G+ D +I+R V +TP +V ++ ++ R N +
Sbjct: 93 WNKRDFNQFIKANEKWGRDDIENIARE-VEGKTPEEVIEYSAVFWERCNEL 142
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
EV +S WT+E+D+ A + +RW +IA +PG++ +K H+
Sbjct: 76 EVKKTS-WTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRTDNAVKNHW 120
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 5 EVGSSSVWTKEQDKA-FENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
EV SS WT+E+D+ FE V +RW +IA +PG++ +K H+
Sbjct: 56 EVKKSS-WTEEEDRIIFEAHKV-----LGNRWAEIAKLLPGRTDNAVKNHW 100
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human Trf1
Length = 69
Score = 28.1 bits (61), Expect = 6.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 119 RKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDR 178
RK AW +E + G+ KYG+G+W I ++ K+ R + M KDR
Sbjct: 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--------------KFNNRTSVMLKDR 53
Query: 179 RRS 181
R+
Sbjct: 54 WRT 56
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 107 NGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGK 141
G++ RS + +++G+AW H + LG D YGK
Sbjct: 121 KGDRFVRSGEWKKRGVAW----HPKWFLGYDVYGK 151
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 107 NGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGK 141
G++ RS + +++G+AW H + LG D YGK
Sbjct: 121 KGDRFVRSGEWKKRGVAW----HPKWFLGYDVYGK 151
>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
Length = 304
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSS 182
AWT+ + F+ +KYG+ D +I+++ V +TP +V + ++ R +
Sbjct: 112 AWTKRDFNQFIKANEKYGRDDIDNIAKD-VEGKTPEEVIEYNAVFWERC---------TE 161
Query: 183 IHDITSVNNGDISAPQGPI 201
+ DI + G I +G I
Sbjct: 162 LQDIERI-MGQIERGEGKI 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,153,748
Number of Sequences: 62578
Number of extensions: 380034
Number of successful extensions: 622
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 50
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)