Query 022439
Match_columns 297
No_of_seqs 242 out of 1497
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 99.9 2.6E-26 8.9E-31 184.9 12.9 104 10-175 2-105 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 99.9 6.5E-26 2.2E-30 181.5 11.5 101 8-170 3-103 (105)
3 3osg_A MYB21; transcription-DN 99.9 1.6E-25 5.4E-30 185.4 13.3 105 5-172 7-111 (126)
4 3zqc_A MYB3; transcription-DNA 99.9 2.9E-25 1E-29 184.8 10.1 103 9-173 2-104 (131)
5 1h8a_C AMV V-MYB, MYB transfor 99.9 5.8E-25 2E-29 182.1 11.4 103 4-168 22-124 (128)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 4.9E-23 1.7E-27 176.2 10.6 102 5-168 54-155 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.8E-23 6.1E-28 178.9 5.8 100 8-168 5-104 (159)
8 2cqq_A RSGI RUH-037, DNAJ homo 99.8 5.9E-20 2E-24 138.6 8.2 67 7-75 6-72 (72)
9 2cjj_A Radialis; plant develop 99.8 7.4E-20 2.5E-24 144.4 7.8 70 7-76 6-75 (93)
10 2cu7_A KIAA1915 protein; nucle 99.7 1.2E-17 4E-22 125.5 8.1 64 120-185 8-71 (72)
11 1h8a_C AMV V-MYB, MYB transfor 99.6 8.2E-17 2.8E-21 133.0 5.6 73 38-168 1-73 (128)
12 2cqr_A RSGI RUH-043, DNAJ homo 99.6 2.6E-16 8.8E-21 118.9 6.9 55 7-61 16-70 (73)
13 1wgx_A KIAA1903 protein; MYB D 99.6 2.8E-16 9.6E-21 118.6 6.6 53 8-60 7-59 (73)
14 4eef_G F-HB80.4, designed hema 99.6 1.2E-16 4.1E-21 120.0 -0.0 50 7-56 18-67 (74)
15 2xag_B REST corepressor 1; ami 99.6 9.5E-16 3.2E-20 151.2 4.2 50 121-172 380-429 (482)
16 2elk_A SPCC24B10.08C protein; 99.6 3.4E-15 1.2E-19 107.7 5.5 47 122-169 10-57 (58)
17 1x41_A Transcriptional adaptor 99.5 3.9E-15 1.3E-19 108.0 5.4 49 121-170 8-56 (60)
18 1guu_A C-MYB, MYB proto-oncoge 99.5 7.5E-15 2.5E-19 103.2 6.6 48 121-169 3-50 (52)
19 1ofc_X ISWI protein; nuclear p 99.5 5.7E-16 2E-20 145.3 1.2 143 10-172 111-277 (304)
20 2yum_A ZZZ3 protein, zinc fing 99.5 3.7E-15 1.3E-19 112.4 5.2 51 121-172 8-63 (75)
21 2yus_A SWI/SNF-related matrix- 99.5 5E-15 1.7E-19 113.5 5.2 49 117-167 14-62 (79)
22 2dim_A Cell division cycle 5-l 99.5 1E-14 3.5E-19 108.7 5.8 52 5-59 5-56 (70)
23 1gvd_A MYB proto-oncogene prot 99.5 1.1E-14 3.9E-19 102.3 5.6 46 122-168 4-49 (52)
24 2d9a_A B-MYB, MYB-related prot 99.5 2.3E-14 7.9E-19 103.6 5.3 49 120-169 7-55 (60)
25 1w0t_A Telomeric repeat bindin 99.5 4E-14 1.4E-18 100.0 6.3 47 122-169 3-51 (53)
26 1ity_A TRF1; helix-turn-helix, 99.5 8.2E-14 2.8E-18 103.5 7.0 52 118-170 7-60 (69)
27 3sjm_A Telomeric repeat-bindin 99.5 9E-14 3.1E-18 102.3 6.9 49 120-169 10-60 (64)
28 2yum_A ZZZ3 protein, zinc fing 99.4 3.7E-13 1.3E-17 101.4 8.7 55 6-60 5-61 (75)
29 2dim_A Cell division cycle 5-l 99.4 1.7E-13 5.7E-18 102.1 5.4 48 120-168 8-55 (70)
30 1ign_A Protein (RAP1); RAP1,ye 99.4 2.9E-12 1E-16 116.0 14.3 136 7-171 6-200 (246)
31 2yus_A SWI/SNF-related matrix- 99.4 2.6E-13 9E-18 103.8 5.9 58 6-67 15-73 (79)
32 2din_A Cell division cycle 5-l 99.4 4.6E-13 1.6E-17 98.6 6.2 51 120-173 8-58 (66)
33 2cqr_A RSGI RUH-043, DNAJ homo 99.4 5E-13 1.7E-17 100.9 6.0 49 120-169 17-68 (73)
34 1x41_A Transcriptional adaptor 99.4 8.2E-13 2.8E-17 95.7 6.9 51 6-59 5-55 (60)
35 2ltp_A Nuclear receptor corepr 99.1 4.8E-14 1.7E-18 110.1 0.0 51 120-172 15-65 (89)
36 2eqr_A N-COR1, N-COR, nuclear 99.3 1.3E-12 4.3E-17 95.1 6.6 47 117-165 8-54 (61)
37 1guu_A C-MYB, MYB proto-oncoge 99.3 1.3E-12 4.6E-17 91.5 6.3 49 8-59 2-50 (52)
38 2ckx_A NGTRF1, telomere bindin 99.3 1.9E-12 6.6E-17 99.9 7.6 50 123-172 2-54 (83)
39 2din_A Cell division cycle 5-l 99.3 1.8E-12 6.3E-17 95.3 6.9 59 4-67 4-62 (66)
40 2d9a_A B-MYB, MYB-related prot 99.3 2.4E-12 8.2E-17 92.9 7.1 52 5-59 4-55 (60)
41 1gvd_A MYB proto-oncogene prot 99.3 1.8E-12 6E-17 91.0 6.1 49 8-59 2-50 (52)
42 2elk_A SPCC24B10.08C protein; 99.3 3.4E-12 1.2E-16 91.9 7.3 48 8-58 8-56 (58)
43 2llk_A Cyclin-D-binding MYB-li 99.3 1.3E-12 4.3E-17 98.7 5.1 46 117-165 19-64 (73)
44 2aje_A Telomere repeat-binding 99.3 4.6E-12 1.6E-16 101.8 7.3 54 118-171 10-66 (105)
45 2juh_A Telomere binding protei 99.3 6.2E-12 2.1E-16 103.4 8.1 56 117-172 13-71 (121)
46 3sjm_A Telomeric repeat-bindin 99.3 5.7E-12 2E-16 92.6 6.6 52 5-59 7-60 (64)
47 2roh_A RTBP1, telomere binding 99.3 1.1E-11 3.7E-16 102.1 8.7 56 117-172 27-85 (122)
48 2cu7_A KIAA1915 protein; nucle 99.3 9.7E-12 3.3E-16 93.1 7.3 53 4-60 4-56 (72)
49 2iw5_B Protein corest, REST co 99.3 2.5E-12 8.6E-17 115.5 4.5 51 120-172 132-182 (235)
50 1w0t_A Telomeric repeat bindin 99.3 9.9E-12 3.4E-16 87.6 6.5 48 9-59 2-51 (53)
51 2cjj_A Radialis; plant develop 99.2 1.8E-11 6.1E-16 96.4 6.7 49 123-172 10-61 (93)
52 1gv2_A C-MYB, MYB proto-oncoge 99.2 1.2E-11 4.1E-16 98.4 5.6 46 122-168 5-50 (105)
53 2juh_A Telomere binding protei 99.2 2E-11 6.9E-16 100.4 6.4 86 6-146 14-103 (121)
54 1ity_A TRF1; helix-turn-helix, 99.2 4.1E-11 1.4E-15 88.8 7.2 53 5-60 6-60 (69)
55 2eqr_A N-COR1, N-COR, nuclear 99.2 5.7E-11 2E-15 86.3 7.4 50 4-57 7-56 (61)
56 2k9n_A MYB24; R2R3 domain, DNA 99.2 3.4E-11 1.2E-15 96.4 5.8 45 123-168 3-47 (107)
57 3osg_A MYB21; transcription-DN 99.1 3.9E-11 1.3E-15 98.8 6.0 63 120-187 10-72 (126)
58 3zqc_A MYB3; transcription-DNA 99.1 5.1E-11 1.7E-15 98.6 6.0 46 123-169 4-49 (131)
59 2roh_A RTBP1, telomere binding 99.1 9.6E-11 3.3E-15 96.5 7.5 52 6-60 28-83 (122)
60 1x58_A Hypothetical protein 49 99.1 7.4E-11 2.5E-15 86.0 5.2 49 120-169 7-57 (62)
61 2llk_A Cyclin-D-binding MYB-li 99.1 9.1E-11 3.1E-15 88.5 5.1 52 4-60 18-69 (73)
62 2yqk_A Arginine-glutamic acid 99.1 2.9E-10 1E-14 83.2 6.7 44 120-164 8-51 (63)
63 2y9y_A Imitation switch protei 99.1 1.1E-09 3.8E-14 105.0 12.5 132 10-173 124-294 (374)
64 1wgx_A KIAA1903 protein; MYB D 99.0 1.5E-10 5.2E-15 87.2 4.3 44 123-167 10-56 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 99.0 3.5E-10 1.2E-14 85.0 6.0 44 122-167 9-55 (72)
66 2crg_A Metastasis associated p 99.0 6.3E-10 2.2E-14 83.1 6.3 44 121-165 8-51 (70)
67 2ltp_A Nuclear receptor corepr 98.5 1E-10 3.5E-15 91.1 0.0 51 6-60 13-63 (89)
68 1ign_A Protein (RAP1); RAP1,ye 98.9 1E-09 3.5E-14 99.4 3.9 50 121-171 8-62 (246)
69 4b4c_A Chromodomain-helicase-D 98.8 4.4E-08 1.5E-12 86.4 13.4 52 8-60 6-59 (211)
70 2ckx_A NGTRF1, telomere bindin 98.8 4.8E-09 1.6E-13 80.9 6.2 48 10-60 1-52 (83)
71 4eef_G F-HB80.4, designed hema 98.8 6.2E-10 2.1E-14 83.5 0.8 44 121-165 20-66 (74)
72 2yqk_A Arginine-glutamic acid 98.8 1.6E-08 5.5E-13 73.8 7.2 48 6-57 6-54 (63)
73 2crg_A Metastasis associated p 98.7 4.8E-08 1.6E-12 72.8 6.9 47 7-57 6-53 (70)
74 2aje_A Telomere repeat-binding 98.7 3.8E-08 1.3E-12 79.0 6.7 53 5-60 9-65 (105)
75 4a69_C Nuclear receptor corepr 98.6 4.4E-08 1.5E-12 77.1 6.1 46 117-164 39-84 (94)
76 1irz_A ARR10-B; helix-turn-hel 98.6 9.6E-08 3.3E-12 70.1 7.2 53 120-173 6-62 (64)
77 2iw5_B Protein corest, REST co 98.6 3.2E-08 1.1E-12 88.9 5.6 49 8-60 132-180 (235)
78 1x58_A Hypothetical protein 49 98.6 1.1E-07 3.7E-12 69.3 6.6 50 6-59 5-57 (62)
79 4a69_C Nuclear receptor corepr 98.5 1.6E-07 5.5E-12 73.8 6.1 45 9-57 43-87 (94)
80 1fex_A TRF2-interacting telome 98.0 4.3E-06 1.5E-10 60.2 4.6 47 122-168 3-57 (59)
81 3hm5_A DNA methyltransferase 1 98.0 1.3E-05 4.4E-10 62.9 6.7 49 10-62 31-84 (93)
82 2xag_B REST corepressor 1; ami 98.0 5.8E-06 2E-10 81.7 5.7 48 8-59 379-426 (482)
83 3hm5_A DNA methyltransferase 1 98.0 1.4E-05 4.6E-10 62.7 6.6 50 122-173 31-85 (93)
84 1ug2_A 2610100B20RIK gene prod 97.9 3E-05 1E-09 60.3 7.2 51 8-59 32-82 (95)
85 2xb0_X Chromo domain-containin 97.8 0.0002 7E-09 66.0 12.3 49 9-58 3-53 (270)
86 1fex_A TRF2-interacting telome 97.8 4.8E-05 1.6E-09 54.7 6.3 50 9-58 2-57 (59)
87 2lr8_A CAsp8-associated protei 96.9 4.2E-06 1.4E-10 61.7 0.0 50 8-59 13-62 (70)
88 1ug2_A 2610100B20RIK gene prod 97.7 6.4E-05 2.2E-09 58.4 6.5 52 120-172 32-85 (95)
89 2lr8_A CAsp8-associated protei 96.6 2E-05 6.9E-10 58.1 0.0 47 122-170 15-63 (70)
90 4iej_A DNA methyltransferase 1 97.3 0.00053 1.8E-08 53.6 6.8 50 10-63 31-85 (93)
91 2ebi_A DNA binding protein GT- 97.2 0.00049 1.7E-08 52.4 5.3 57 9-65 4-70 (86)
92 2ebi_A DNA binding protein GT- 96.8 0.0014 4.9E-08 49.7 5.1 50 122-172 5-67 (86)
93 1ofc_X ISWI protein; nuclear p 96.8 0.0024 8.3E-08 59.8 7.1 48 123-171 112-159 (304)
94 4iej_A DNA methyltransferase 1 96.7 0.0038 1.3E-07 48.8 6.6 52 122-174 31-86 (93)
95 4b4c_A Chromodomain-helicase-D 96.0 0.0082 2.8E-07 52.4 5.5 52 120-171 6-60 (211)
96 1irz_A ARR10-B; helix-turn-hel 95.4 0.038 1.3E-06 40.2 6.3 55 6-61 4-60 (64)
97 2y9y_A Imitation switch protei 91.7 0.24 8.2E-06 47.5 6.0 48 123-171 125-173 (374)
98 2xb0_X Chromo domain-containin 80.8 3.5 0.00012 37.7 6.9 43 123-165 5-50 (270)
99 2hzd_A Transcriptional enhance 80.6 5.4 0.00019 30.1 6.8 49 122-170 7-74 (82)
100 2hzd_A Transcriptional enhance 63.5 11 0.00036 28.5 4.8 55 6-60 3-74 (82)
101 2ecc_A Homeobox and leucine zi 53.7 54 0.0018 24.0 7.1 50 5-55 3-52 (76)
102 2li6_A SWI/SNF chromatin-remod 50.3 16 0.00054 28.7 4.0 28 143-171 72-99 (116)
103 2lc3_A E3 ubiquitin-protein li 49.0 8.8 0.0003 29.1 2.1 54 117-171 9-80 (88)
104 3i4p_A Transcriptional regulat 45.5 28 0.00095 28.3 5.0 42 15-60 3-44 (162)
105 2dn0_A Zinc fingers and homeob 44.0 83 0.0028 22.2 7.3 51 5-56 8-58 (76)
106 1kkx_A Transcription regulator 41.4 32 0.0011 27.4 4.6 41 20-60 53-97 (123)
107 2da6_A Hepatocyte nuclear fact 40.8 54 0.0019 25.4 5.7 36 7-42 8-43 (102)
108 2dms_A Homeobox protein OTX2; 40.8 84 0.0029 22.4 6.5 49 7-56 9-57 (80)
109 2lm1_A Lysine-specific demethy 40.6 41 0.0014 25.7 4.9 29 143-172 67-99 (107)
110 2e1o_A Homeobox protein PRH; D 40.3 90 0.0031 21.6 7.4 49 7-56 9-57 (70)
111 1kkx_A Transcription regulator 39.6 23 0.0008 28.2 3.5 30 143-173 71-100 (123)
112 2hdd_A Protein (engrailed home 39.3 80 0.0027 21.2 5.9 49 6-55 4-52 (61)
113 3a02_A Homeobox protein arista 38.9 71 0.0024 21.4 5.5 48 8-56 2-49 (60)
114 2jrz_A Histone demethylase jar 37.9 31 0.001 27.1 3.9 41 131-172 44-95 (117)
115 2dmu_A Homeobox protein goosec 37.4 1E+02 0.0034 21.3 6.8 48 7-55 9-56 (70)
116 2cuf_A FLJ21616 protein; homeo 37.0 59 0.002 24.1 5.3 50 7-56 9-72 (95)
117 2cxy_A BAF250B subunit, HBAF25 36.7 41 0.0014 26.6 4.5 40 132-172 56-106 (125)
118 2dmt_A Homeobox protein BARH-l 36.6 87 0.003 22.4 6.0 48 8-56 20-67 (80)
119 1fse_A GERE; helix-turn-helix 36.6 96 0.0033 20.8 6.3 52 3-61 3-54 (74)
120 1ig7_A Homeotic protein MSX-1; 35.8 94 0.0032 20.5 6.7 47 8-55 3-49 (58)
121 2e1c_A Putative HTH-type trans 34.9 61 0.0021 26.6 5.5 42 15-60 27-68 (171)
122 2da1_A Alpha-fetoprotein enhan 34.6 1.1E+02 0.0038 21.0 7.3 49 7-56 9-57 (70)
123 2eqy_A RBP2 like, jumonji, at 34.3 88 0.003 24.6 6.1 41 132-173 47-98 (122)
124 1c20_A DEAD ringer protein; DN 34.0 48 0.0017 26.3 4.5 40 132-172 57-108 (128)
125 2dmq_A LIM/homeobox protein LH 33.6 1.3E+02 0.0043 21.3 7.6 48 7-55 9-56 (80)
126 1jgg_A Segmentation protein EV 33.2 1.1E+02 0.0037 20.4 6.0 47 8-55 4-50 (60)
127 1bw5_A ISL-1HD, insulin gene e 33.0 1.2E+02 0.004 20.7 6.6 50 6-56 4-53 (66)
128 2cra_A Homeobox protein HOX-B1 32.7 1.2E+02 0.0042 20.9 7.3 49 7-56 9-57 (70)
129 2cue_A Paired box protein PAX6 32.4 1.1E+02 0.0039 21.7 6.0 48 7-55 9-56 (80)
130 2dbb_A Putative HTH-type trans 31.3 1E+02 0.0035 24.1 6.1 40 17-60 11-50 (151)
131 2da2_A Alpha-fetoprotein enhan 30.9 1.3E+02 0.0044 20.6 7.4 49 7-56 9-57 (70)
132 1akh_A Protein (mating-type pr 30.0 1.1E+02 0.0038 20.3 5.4 47 8-55 8-54 (61)
133 1ig6_A MRF-2, modulator recogn 29.9 29 0.00099 26.7 2.4 27 143-170 56-87 (107)
134 2ly9_A Zinc fingers and homeob 29.6 1.4E+02 0.0049 20.7 6.6 53 4-57 5-57 (74)
135 3o2i_A Uncharacterized protein 29.5 1.3E+02 0.0044 23.5 6.0 15 123-137 103-117 (125)
136 2rq5_A Protein jumonji; develo 29.5 42 0.0014 26.7 3.4 43 131-174 46-100 (121)
137 2kk0_A AT-rich interactive dom 28.8 58 0.002 26.5 4.2 40 132-172 69-120 (145)
138 2djn_A Homeobox protein DLX-5; 28.8 1.4E+02 0.0049 20.5 6.6 49 7-56 9-57 (70)
139 1fjl_A Paired protein; DNA-bin 28.7 1.4E+02 0.0048 21.2 6.0 47 8-55 21-67 (81)
140 2k40_A Homeobox expressed in E 28.0 1.3E+02 0.0043 20.6 5.4 48 8-56 4-51 (67)
141 2h1k_A IPF-1, pancreatic and d 27.5 1.4E+02 0.0049 20.0 6.0 48 7-55 5-52 (63)
142 2da3_A Alpha-fetoprotein enhan 27.5 76 0.0026 22.4 4.3 47 9-56 21-67 (80)
143 1nk2_P Homeobox protein VND; h 27.5 1.6E+02 0.0056 20.7 6.7 47 8-55 12-58 (77)
144 1zq3_P PRD-4, homeotic bicoid 27.4 1.3E+02 0.0043 20.7 5.4 47 8-55 5-51 (68)
145 1w3w_A Annexin A8; coagulation 27.0 1E+02 0.0035 28.3 6.1 47 123-171 93-139 (327)
146 1yz8_P Pituitary homeobox 2; D 26.3 1.3E+02 0.0046 20.5 5.3 48 7-55 5-52 (68)
147 2o8x_A Probable RNA polymerase 25.8 1.2E+02 0.004 20.1 4.9 46 123-172 15-60 (70)
148 2cyy_A Putative HTH-type trans 25.5 1.2E+02 0.0041 23.8 5.6 40 17-60 9-48 (151)
149 2l7z_A Homeobox protein HOX-A1 25.4 1.7E+02 0.0058 20.4 5.8 50 6-56 8-57 (73)
150 2kt0_A Nanog, homeobox protein 23.5 2E+02 0.0069 20.4 6.4 48 8-56 25-72 (84)
151 1k61_A Mating-type protein alp 23.1 1.7E+02 0.0058 19.4 6.0 46 9-55 2-50 (60)
152 1fse_A GERE; helix-turn-helix 22.9 1.6E+02 0.0053 19.7 5.1 46 123-173 11-56 (74)
153 2p1m_A SKP1-like protein 1A; F 22.8 41 0.0014 27.6 2.2 20 36-55 119-138 (160)
154 1je8_A Nitrate/nitrite respons 22.8 1.1E+02 0.0039 21.6 4.5 45 123-172 21-65 (82)
155 3c57_A Two component transcrip 22.8 1.6E+02 0.0055 21.4 5.5 47 123-174 27-73 (95)
156 3ulq_B Transcriptional regulat 22.7 1.2E+02 0.0042 22.1 4.8 46 123-173 29-74 (90)
157 2jxj_A Histone demethylase jar 22.6 41 0.0014 25.2 2.0 28 33-60 58-89 (96)
158 1fs1_B SKP1, cyclin A/CDK2-ass 22.1 34 0.0012 27.5 1.6 20 36-55 115-134 (141)
159 2vi6_A Homeobox protein nanog; 21.9 1.8E+02 0.0063 19.3 5.8 47 8-55 6-52 (62)
160 1x3u_A Transcriptional regulat 21.5 1.6E+02 0.0054 20.0 5.0 45 123-172 16-60 (79)
161 3cz6_A DNA-binding protein RAP 21.0 44 0.0015 28.3 2.1 15 7-21 112-126 (168)
162 2hi3_A Homeodomain-only protei 21.0 2.1E+02 0.0073 19.8 6.1 48 7-55 4-52 (73)
163 2cg4_A Regulatory protein ASNC 20.9 1.6E+02 0.0055 23.0 5.5 40 17-60 10-49 (152)
164 1ahd_P Antennapedia protein mu 20.7 2.1E+02 0.0072 19.6 6.5 47 8-55 5-51 (68)
165 2r5y_A Homeotic protein sex co 20.7 2.4E+02 0.0083 20.3 6.1 48 8-56 31-78 (88)
166 1uhs_A HOP, homeodomain only p 20.4 2.2E+02 0.0075 19.6 5.9 47 8-55 4-51 (72)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.94 E-value=2.6e-26 Score=184.94 Aligned_cols=104 Identities=15% Similarity=0.359 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 022439 10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEG 89 (297)
Q Consensus 10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~~~ 89 (297)
+.||.|||++|.++|..|+.. +|.+||.+|+|||..||++||..+++. +
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p------------~---------------- 50 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYINP------------A---------------- 50 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSSS------------C----------------
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHcc------------c----------------
Confidence 679999999999999999974 499999999999999999999976642 0
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439 90 TSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 169 (297)
Q Consensus 90 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~ 169 (297)
.+.++||+|||.+|+.++.+||. +|..||+ +|++||+.||++||+.+.+
T Consensus 51 -----------------------------i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 51 -----------------------------LRTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp -----------------------------CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHH
T ss_pred -----------------------------ccccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHh
Confidence 01238999999999999999999 9999996 9999999999999999888
Q ss_pred HHhccC
Q 022439 170 RLNSMN 175 (297)
Q Consensus 170 r~~~~~ 175 (297)
+..+..
T Consensus 100 ~~~~~~ 105 (107)
T 2k9n_A 100 HRAKHQ 105 (107)
T ss_dssp HHHSST
T ss_pred hHHHhh
Confidence 876443
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.93 E-value=6.5e-26 Score=181.50 Aligned_cols=101 Identities=24% Similarity=0.499 Sum_probs=87.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGD 87 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~ 87 (297)
..+.||.|||++|.+++.+|+.. +|.+||++|+|||..||++||..+++. .
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p------------~-------------- 53 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLNP------------E-------------- 53 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTCC------------C--------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccCC------------c--------------
Confidence 46789999999999999999975 399999999999999999999876531 0
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439 88 EGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167 (297)
Q Consensus 88 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky 167 (297)
.+.++||+|||++|++++++||. +|..||+ +|++||+.||++||+.+
T Consensus 54 -------------------------------~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 -------------------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNST 100 (105)
T ss_dssp -------------------------------CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHH
T ss_pred -------------------------------ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 02238999999999999999998 9999995 99999999999999876
Q ss_pred HHH
Q 022439 168 FIR 170 (297)
Q Consensus 168 ~~r 170 (297)
+++
T Consensus 101 ~~~ 103 (105)
T 1gv2_A 101 MRR 103 (105)
T ss_dssp TC-
T ss_pred Hhc
Confidence 544
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.93 E-value=1.6e-25 Score=185.39 Aligned_cols=105 Identities=21% Similarity=0.452 Sum_probs=92.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSH 84 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~ 84 (297)
.....+.||.|||++|.+++++|+. +|.+||+.|+|||..||++||..++.. .
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p------------~----------- 59 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLAP------------S----------- 59 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTST------------T-----------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhccc------------c-----------
Confidence 3456789999999999999999987 399999999999999999999976642 0
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439 85 AGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA 164 (297)
Q Consensus 85 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~ 164 (297)
.+.++||+|||++|++++++||. +|..||+ +|++||+.||++||
T Consensus 60 ----------------------------------~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw 103 (126)
T 3osg_A 60 ----------------------------------ISHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRW 103 (126)
T ss_dssp ----------------------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHH
T ss_pred ----------------------------------cccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHH
Confidence 01238999999999999999998 9999995 99999999999999
Q ss_pred HHHHHHHh
Q 022439 165 QKYFIRLN 172 (297)
Q Consensus 165 qky~~r~~ 172 (297)
..+++++.
T Consensus 104 ~~l~~k~~ 111 (126)
T 3osg_A 104 VTISNKLG 111 (126)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 98887764
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.92 E-value=2.9e-25 Score=184.79 Aligned_cols=103 Identities=17% Similarity=0.330 Sum_probs=90.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 022439 9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDE 88 (297)
Q Consensus 9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~~ 88 (297)
.+.||.|||++|.++|..|+... |..||.+|+|||..||++||..+++. .
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~l~p------------~--------------- 51 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQN---WPRITSFLPNRSPKQCRERWFNHLDP------------A--------------- 51 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCC---GGGGTTSCTTSCHHHHHHHHHHHTST------------T---------------
T ss_pred CCCCCHHHHHHHHHHHHHhCcCC---HHHHHHHHCCCCHHHHHHHHhhccCc------------c---------------
Confidence 47899999999999999999754 99999999999999999999876642 0
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439 89 GTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168 (297)
Q Consensus 89 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~ 168 (297)
.+.++||+|||++|++++.+||. +|..||+ +|++||+.||++||+.++
T Consensus 52 ------------------------------~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 52 ------------------------------VVKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp ------------------------------CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTT
T ss_pred ------------------------------ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 01238999999999999999998 9999996 999999999999998887
Q ss_pred HHHhc
Q 022439 169 IRLNS 173 (297)
Q Consensus 169 ~r~~~ 173 (297)
.+..+
T Consensus 100 ~~~~~ 104 (131)
T 3zqc_A 100 SKRIS 104 (131)
T ss_dssp GGGCC
T ss_pred HHHhh
Confidence 66543
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.92 E-value=5.8e-25 Score=182.05 Aligned_cols=103 Identities=23% Similarity=0.485 Sum_probs=89.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCC
Q 022439 4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMS 83 (297)
Q Consensus 4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~ 83 (297)
+.....+.||.|||++|.+++++|+.. +|.+||.+|+|||..||++||..+++. .
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p------------~---------- 76 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLNP------------E---------- 76 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTCS------------S----------
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhccc------------c----------
Confidence 334567899999999999999999975 399999999999999999999876531 0
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHH
Q 022439 84 HAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASH 163 (297)
Q Consensus 84 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh 163 (297)
.+.++||+|||++|++++++||. +|..||+ +|++||+.||++|
T Consensus 77 -----------------------------------~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r 119 (128)
T 1h8a_C 77 -----------------------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNH 119 (128)
T ss_dssp -----------------------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHH
T ss_pred -----------------------------------cccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHH
Confidence 02238999999999999999998 9999995 9999999999999
Q ss_pred HHHHH
Q 022439 164 AQKYF 168 (297)
Q Consensus 164 ~qky~ 168 (297)
|..++
T Consensus 120 ~~~~~ 124 (128)
T 1h8a_C 120 WNSTM 124 (128)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 87554
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.89 E-value=4.9e-23 Score=176.22 Aligned_cols=102 Identities=23% Similarity=0.465 Sum_probs=88.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSH 84 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~ 84 (297)
.....+.||.|||.+|.++++.|+.. +|..||.+|+|||..||++||..++..
T Consensus 54 p~~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p------------------------ 106 (159)
T 1h89_C 54 PELIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLNP------------------------ 106 (159)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTCT------------------------
T ss_pred CCcCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhCc------------------------
Confidence 34567899999999999999999974 499999999999999999999876531
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439 85 AGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA 164 (297)
Q Consensus 85 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~ 164 (297)
..+..+||+|||++|++++++||. +|..||+ +|++||+.||++||
T Consensus 107 ---------------------------------~~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~ 151 (159)
T 1h89_C 107 ---------------------------------EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHW 151 (159)
T ss_dssp ---------------------------------TSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHH
T ss_pred ---------------------------------cccccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHH
Confidence 012238999999999999999998 9999996 99999999999998
Q ss_pred HHHH
Q 022439 165 QKYF 168 (297)
Q Consensus 165 qky~ 168 (297)
+.++
T Consensus 152 ~~~~ 155 (159)
T 1h89_C 152 NSTM 155 (159)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 7543
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.88 E-value=1.8e-23 Score=178.94 Aligned_cols=100 Identities=19% Similarity=0.418 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGD 87 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~ 87 (297)
..+.||+|||++|.++|.+|+.+ +|..||++|+|||..||++||..++..
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p--------------------------- 54 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLNP--------------------------- 54 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCT---------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccCC---------------------------
Confidence 46789999999999999999974 499999999999999999999865532
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439 88 EGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167 (297)
Q Consensus 88 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky 167 (297)
..+.++||+|||++|+.++++||.++|..||+ ++++||+.||++||++|
T Consensus 55 ------------------------------~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 55 ------------------------------ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNH 103 (159)
T ss_dssp ------------------------------TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHT
T ss_pred ------------------------------CcCCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 00223899999999999999999768999995 99999999999999877
Q ss_pred H
Q 022439 168 F 168 (297)
Q Consensus 168 ~ 168 (297)
+
T Consensus 104 l 104 (159)
T 1h89_C 104 L 104 (159)
T ss_dssp T
T ss_pred h
Confidence 5
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.81 E-value=5.9e-20 Score=138.62 Aligned_cols=67 Identities=30% Similarity=0.587 Sum_probs=62.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCC
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYN 75 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~ 75 (297)
.....||+|||++|++||++|+.++++||++||++| |||++||++||+.|++|+ .||+|++++|+|.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~~ 72 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSSG 72 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCCC
Confidence 345689999999999999999999999999999998 999999999999999996 7899999999873
No 9
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.80 E-value=7.4e-20 Score=144.43 Aligned_cols=70 Identities=49% Similarity=0.956 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCC
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNS 76 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~ 76 (297)
.+...||.|||++|++||++|+.++++||++||++|||||.+||++||+.|++||..||+|.+++|+|..
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~ 75 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT 75 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 4467899999999999999999998899999999999999999999999999999999999999999864
No 10
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=1.2e-17 Score=125.52 Aligned_cols=64 Identities=33% Similarity=0.583 Sum_probs=59.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhccCCCCCCCCccc
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHD 185 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~~~k~~rr~si~d 185 (297)
+..+||+|||++|++++++||. +|..||+ +|++||+.||++||++||+++.+.+.++++++||+
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 4459999999999999999999 9999996 99999999999999999999988788888888886
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.65 E-value=8.2e-17 Score=132.98 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=43.9
Q ss_pred HhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhh
Q 022439 38 IAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQE 117 (297)
Q Consensus 38 IA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~ 117 (297)
||+.|+|||..||++||..++..
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p--------------------------------------------------------- 23 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNP--------------------------------------------------------- 23 (128)
T ss_dssp ---------------------CT---------------------------------------------------------
T ss_pred CccccCCCCHHHHHHHHHHhhCC---------------------------------------------------------
Confidence 89999999999999999865532
Q ss_pred hccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439 118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168 (297)
Q Consensus 118 ~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~ 168 (297)
..+.++||+|||++|++++++||.++|..||. +|++||..||+.||++|+
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence 01223899999999999999999878999995 999999999999988765
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.64 E-value=2.6e-16 Score=118.94 Aligned_cols=55 Identities=44% Similarity=0.693 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV 61 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv 61 (297)
.....||.|||++|++||++|+.++++||.+||++|||||.+||++||+.|++|+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence 3556799999999999999999888899999999999999999999999999886
No 13
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=2.8e-16 Score=118.57 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=49.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
....||+||+++|++||+.|+.++++||++||++|+|||++||++||+.|+.+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 45679999999999999999999999999999999999999999999988654
No 14
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.58 E-value=1.2e-16 Score=120.00 Aligned_cols=50 Identities=46% Similarity=0.769 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
.+...||+||+++||+||++|++++++||++||+.|||||++||++||+.
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999973
No 15
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.56 E-value=9.5e-16 Score=151.20 Aligned_cols=50 Identities=30% Similarity=0.547 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
..+||+||+.+|+++|.+||+ +|..||+ +|+|||..||++||++|+++++
T Consensus 380 ~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHhC
Confidence 569999999999999999999 9999995 9999999999999998887765
No 16
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=3.4e-15 Score=107.72 Aligned_cols=47 Identities=30% Similarity=0.581 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 022439 122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV-TRTPTQVASHAQKYFI 169 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~-tRT~~Q~~sh~qky~~ 169 (297)
.+||+|||++|+++|++||.++|..||+ +|+ +||+.||+.||++||.
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence 3899999999999999999779999995 999 9999999999999975
No 17
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=3.9e-15 Score=107.95 Aligned_cols=49 Identities=27% Similarity=0.534 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022439 121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIR 170 (297)
Q Consensus 121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r 170 (297)
+.+||+|||++|+++|++||.++|..||+ +|++||+.||++||++|+..
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHccC
Confidence 34899999999999999999669999995 99999999999999988753
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.55 E-value=7.5e-15 Score=103.17 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439 121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 169 (297)
Q Consensus 121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~ 169 (297)
..+||+|||++|++++++||.++|..||+ +|++||+.||++||++|+.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence 34899999999999999999989999995 9999999999999998863
No 19
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.55 E-value=5.7e-16 Score=145.27 Aligned_cols=143 Identities=23% Similarity=0.290 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhh----------hhcccCCCCCCCCCCCCC
Q 022439 10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV----------NRIESGCVPLPSYNSSSD 79 (297)
Q Consensus 10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv----------~~IesG~v~lp~y~~~~~ 79 (297)
+.||+.|...|++|+++||.+. |+.||+.|+|||.+||+++|+.|.+.. ..||.|...+........
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~---~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~ 187 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK 187 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHH---HHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999864 999999999999999999998887665 457776544322110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCC---Cchhhhh---h----
Q 022439 80 GSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGK---GDWRSIS---R---- 149 (297)
Q Consensus 80 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~---g~W~~Ia---r---- 149 (297)
.....+. . + . .+-...+......++..||+|||+.||.+|.+||. |+|..|. +
T Consensus 188 ~l~~Ki~-----~-----~---~----~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~ 250 (304)
T 1ofc_X 188 ALDQKMS-----R-----Y---R----APFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQ 250 (304)
T ss_dssp HHHHHHH-----T-----C---S----SHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGG
T ss_pred HHHHHHH-----H-----h---c----CcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcc
Confidence 0000000 0 0 0 00000000001125568999999999999999999 9999995 2
Q ss_pred ----hhcCCCCHHHHHHHHHHHHHHHh
Q 022439 150 ----NFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 150 ----~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
+||.+||+.+|..|++-++.-+.
T Consensus 251 FrFDwf~kSRTp~el~rRc~tLi~~ie 277 (304)
T 1ofc_X 251 FRFDWFIKSRTALELQRRCNTLITLIE 277 (304)
T ss_dssp GTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 69999999999999987765543
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.7e-15 Score=112.40 Aligned_cols=51 Identities=39% Similarity=0.578 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-----CchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 121 GIAWTEDEHRLFLLGLDKYGK-----GDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 121 ~~~WT~eEd~~ll~~l~k~G~-----g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
..+||+|||++|+++|++||. .+|..||+ +|++||..||++||++||.++.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Confidence 348999999999999999995 49999995 9999999999999999998764
No 21
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.53 E-value=5e-15 Score=113.46 Aligned_cols=49 Identities=33% Similarity=0.554 Sum_probs=43.4
Q ss_pred hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439 117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167 (297)
Q Consensus 117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky 167 (297)
......+||+|||++||++|++|| ++|..||+ +|++||+.||++||++|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence 344556999999999999999999 49999995 99999999999998755
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=108.69 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~ 59 (297)
.....+.||.|||++|.+++.+|+.. +|.+||.+|+|||..||++||..++.
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 34567799999999999999999964 39999999999999999999997664
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.52 E-value=1.1e-14 Score=102.33 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439 122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~ 168 (297)
.+||+|||++|++++++||.++|..||+ +|++||..||++||++|+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 4899999999999999999878999995 999999999999998775
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=2.3e-14 Score=103.58 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=44.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 169 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~ 169 (297)
+..+||+|||++|++++++||.++|..||+ +|++||+.||++||++|+.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcC
Confidence 345899999999999999999669999995 9999999999999987753
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=4e-14 Score=100.00 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC--CCCHHHHHHHHHHHHH
Q 022439 122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV--TRTPTQVASHAQKYFI 169 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~--tRT~~Q~~sh~qky~~ 169 (297)
.+||+|||++|++++++||.++|..||+ +++ +||+.||++||.+|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence 4899999999999999999779999995 999 9999999999998764
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.47 E-value=8.2e-14 Score=103.54 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=46.8
Q ss_pred hccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC--CCCHHHHHHHHHHHHHH
Q 022439 118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV--TRTPTQVASHAQKYFIR 170 (297)
Q Consensus 118 ~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~--tRT~~Q~~sh~qky~~r 170 (297)
+++..+||+|||++|+++|++||.++|..||+ +++ +||..||++||++|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCC
Confidence 44566999999999999999999779999995 999 99999999999988765
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.46 E-value=9e-14 Score=102.31 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC--CCCHHHHHHHHHHHHH
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV--TRTPTQVASHAQKYFI 169 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~--tRT~~Q~~sh~qky~~ 169 (297)
+..+||+|||++|+++|++||.++|..||+ +++ +||+.||+.||+++.+
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence 445899999999999999999889999996 655 9999999999988753
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=101.38 Aligned_cols=55 Identities=25% Similarity=0.588 Sum_probs=48.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCC--ChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDA--SDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~--~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
....+.||.|||++|+++|++|+.++ ..+|.+||++|+|||..||++||..++.+
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999754 36899999999999999999999876654
No 29
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=102.06 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=43.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~ 168 (297)
++.+||+|||++|+++|++||.++|..||+ +|++||..||+.||++|+
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHc
Confidence 445899999999999999999669999995 999999999999988764
No 30
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.41 E-value=2.9e-12 Score=115.95 Aligned_cols=136 Identities=11% Similarity=0.217 Sum_probs=90.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--CChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 022439 7 GSSSVWTKEQDKAFENALVSYPED--ASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSH 84 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~--~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~ 84 (297)
.....||.|||++|..++.+||.. +...|..||.+|+|||..||++||..++..- ++-. +....+..+ ..+.
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--ln~v-y~~ded~~L---i~d~ 79 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--LEYV-YEVDKFGKL---VRDD 79 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--CCCE-ECBCTTSCB---CBCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--cccc-cccCcchhh---hhcc
Confidence 345789999999999999999873 3334999999999999999999999876541 2210 111111100 0000
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHH-h------------------------
Q 022439 85 AGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDK-Y------------------------ 139 (297)
Q Consensus 85 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k-~------------------------ 139 (297)
...|-.+ . .-+..-...||.|||-+|...+++ |
T Consensus 80 ~Gn~iki--------------------s--~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~ 137 (246)
T 1ign_A 80 DGNLIKT--------------------K--VLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTA 137 (246)
T ss_dssp TSCBCEE--------------------S--SCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC--------
T ss_pred CCCceee--------------------e--ccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhh
Confidence 0000000 0 000011237999999999999987 2
Q ss_pred --------C------------------------CCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439 140 --------G------------------------KGDWRSISRNFVVTRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 140 --------G------------------------~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~ 171 (297)
| .+.|+.||+ ++++||...+|+||.|++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~-~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 138 IARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAE-EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp -----------------------CCCCCCCCCCTTHHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred hhhhhcccCccccccCCcchhhhccccccCcchHHHHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence 1 136999995 999999999999999988775
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=103.83 Aligned_cols=58 Identities=22% Similarity=0.436 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh-hhhhhhcccC
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL-VDDVNRIESG 67 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l-~~dv~~IesG 67 (297)
......||+|||++|++||++|+. +|.+||++|++||..||++||..+ ++|+..+|++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~ 73 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSD 73 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCC
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHhcccccccccCC
Confidence 345678999999999999999993 499999999999999999999977 7776665544
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.6e-13 Score=98.58 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=45.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS 173 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~ 173 (297)
+..+||.|||++|++++++||. +|..||+ +++||+.||++||++|+.....
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhc
Confidence 4458999999999999999999 9999995 5679999999999999887653
No 33
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=5e-13 Score=100.89 Aligned_cols=49 Identities=22% Similarity=0.517 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQKYFI 169 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qky~~ 169 (297)
...+||.|||++|+.+|.+||++ +|.+||+ +|++||..||++||+.+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHH
Confidence 45589999999999999999942 8999995 9999999999999987643
No 34
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=8.2e-13 Score=95.66 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~ 59 (297)
......||+|||++|.+++++|+.+ +|.+||++|+|||..||++||..++.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4566789999999999999999964 39999999999999999999997664
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.06 E-value=4.8e-14 Score=110.09 Aligned_cols=51 Identities=31% Similarity=0.434 Sum_probs=47.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
+.++||+|||++|++++.+||. +|..||+ +|++||+.||++||+.|+++++
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 4458999999999999999999 9999995 9999999999999999988764
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=95.13 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=42.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHH
Q 022439 117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ 165 (297)
Q Consensus 117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~q 165 (297)
+++...+||+||+++|+++|.+||+ +|..|| .+|++||..||+.||.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLYYY 54 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHH
Confidence 4556679999999999999999998 999999 5999999999999853
No 37
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.34 E-value=1.3e-12 Score=91.54 Aligned_cols=49 Identities=18% Similarity=0.497 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~ 59 (297)
..+.||.|||++|.+++.+|+.+ +|.+||++|+|||..||++||..+++
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999984 39999999999999999999998764
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=1.9e-12 Score=99.93 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhh---hcCCCCHHHHHHHHHHHHHHHh
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRN---FVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~---~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
+||+|||++|++++++||.|+|+.|++. ++++||..||+++|+++++...
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999963 3899999999999999887553
No 39
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=95.32 Aligned_cols=59 Identities=25% Similarity=0.613 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccC
Q 022439 4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESG 67 (297)
Q Consensus 4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG 67 (297)
+.....+.||.|||++|.+++..|+. +|.+||+ ++|||..||++||..++.+...+++|
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 44566789999999999999999997 3999999 88999999999999999987777755
No 40
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=2.4e-12 Score=92.90 Aligned_cols=52 Identities=13% Similarity=0.414 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~ 59 (297)
.....+.||.|||++|.+++.+|+.. +|.+||.+|+|||..||++||..++.
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999964 39999999999999999999997765
No 41
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.33 E-value=1.8e-12 Score=91.02 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~ 59 (297)
..+.||.|||++|.+++.+|+.. +|.+||.+|+|||..||++||..++.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999974 39999999999999999999997664
No 42
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.32 E-value=3.4e-12 Score=91.88 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-CCCHHHHHHHHHHhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-GKSLEEIKQHYELLV 58 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-GRT~~Qcr~rY~~l~ 58 (297)
..+.||.|||++|.++|++|+.+. |.+||++|+ |||..||++||..+.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~---W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGN---WADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTC---HHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999653 999999999 999999999998653
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=98.69 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=41.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHH
Q 022439 117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ 165 (297)
Q Consensus 117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~q 165 (297)
+..+.++||+|||++|++++++||. +|..||+ ++ +||+.||++||+
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence 3445569999999999999999999 8999996 88 999999999986
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=4.6e-12 Score=101.84 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=47.3
Q ss_pred hccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhh---cCCCCHHHHHHHHHHHHHHH
Q 022439 118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 118 ~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~---v~tRT~~Q~~sh~qky~~r~ 171 (297)
+++..+||+|||++|+++|++||.|+|+.|++.+ +++||..||+++|+++++..
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4566699999999999999999999999999643 38999999999999887654
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.29 E-value=6.2e-12 Score=103.43 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=48.9
Q ss_pred hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 022439 117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~---v~tRT~~Q~~sh~qky~~r~~ 172 (297)
.+++..+||+|||++|+++|++||.|+|..|++.+ +.+||..||+++|+++++...
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 35566699999999999999999999999999743 489999999999999887643
No 46
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.28 E-value=5.7e-12 Score=92.62 Aligned_cols=52 Identities=19% Similarity=0.456 Sum_probs=44.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhhh
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLVD 59 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~~ 59 (297)
+......||+|||++|.++|++|+.+. |.+||++++ |||..||++||..|+.
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCc---hHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 345678899999999999999999754 999999977 9999999999998765
No 47
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.27 E-value=1.1e-11 Score=102.11 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=48.8
Q ss_pred hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 022439 117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~---v~tRT~~Q~~sh~qky~~r~~ 172 (297)
.+++..+||+|||++|+++|++||.|+|..|++.+ +.+||..||+++|+++++...
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34566699999999999999999999999999743 389999999999999887654
No 48
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.26 E-value=9.7e-12 Score=93.05 Aligned_cols=53 Identities=23% Similarity=0.454 Sum_probs=47.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
+.....+.||.|||++|.+++..|+.. |.+||.+|+|||..||+.||..++..
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 445677899999999999999999984 99999999999999999999987765
No 49
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.26 E-value=2.5e-12 Score=115.46 Aligned_cols=51 Identities=29% Similarity=0.518 Sum_probs=46.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||++|++|++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHhh
Confidence 4458999999999999999999 9999996 9999999999999999887754
No 50
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.25 E-value=9.9e-12 Score=87.63 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhhh
Q 022439 9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLVD 59 (297)
Q Consensus 9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~~ 59 (297)
.+.||+|||++|..++++|+.+. |.+||.+|+ |||..||++||..++.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC---HHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999999753 999999999 9999999999998763
No 51
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.21 E-value=1.8e-11 Score=96.42 Aligned_cols=49 Identities=29% Similarity=0.567 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 123 AWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
+||.|||++|+.+|.+||.+ +|.+||+ +|++||..||++||++++....
T Consensus 10 ~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999843 7999995 9999999999999999876653
No 52
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.21 E-value=1.2e-11 Score=98.36 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439 122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~ 168 (297)
++||+|||++|+.+|++||.++|..||+ +|++||..||+.||++|+
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence 4899999999999999999878999995 999999999999988764
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.19 E-value=2e-11 Score=100.37 Aligned_cols=86 Identities=14% Similarity=0.249 Sum_probs=69.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC----CCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCC
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADV----PGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGS 81 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V----pGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~ 81 (297)
....+.||.|||++|..++++|+.+. |.+|+..+ +|||..||++||..++.... |+ |.
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G~---W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~-~~------p~-------- 75 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS-IA------PQ-------- 75 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGGC---HHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH-TC------ST--------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHhccccCCCCHHHHHHHHHHHHhhhc-cC------Cc--------
Confidence 44567899999999999999999854 99999984 89999999999998876311 10 00
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhh
Q 022439 82 MSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRS 146 (297)
Q Consensus 82 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~ 146 (297)
.+++.+|++||+.+++++...+|+ +|.+
T Consensus 76 ------------------------------------~krg~~~p~e~~~rv~~~h~~~gn-~~~~ 103 (121)
T 2juh_A 76 ------------------------------------QRRGEPVPQDLLDRVLAAHAYWSQ-QQGK 103 (121)
T ss_dssp ------------------------------------TCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred ------------------------------------ccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence 112348999999999999999998 8876
No 54
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.18 E-value=4.1e-11 Score=88.83 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=47.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhhhh
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLVDD 60 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~~d 60 (297)
.....+.||.|||.+|..++++|+.+. |.+||.+|+ |||..||++||..++..
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSC---HHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCc---HHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 345678899999999999999999753 999999999 99999999999987763
No 55
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=5.7e-11 Score=86.31 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=44.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439 4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL 57 (297)
Q Consensus 4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l 57 (297)
.+......||+||+++|++++++||.+ |.+||++|++||..||+++|..-
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence 345667899999999999999999974 99999999999999999999753
No 56
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.15 E-value=3.4e-11 Score=96.39 Aligned_cols=45 Identities=31% Similarity=0.563 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~ 168 (297)
.||+|||++|+.+|++||.++|..||. +|++||..||+.||.+|+
T Consensus 3 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI 47 (107)
T ss_dssp SSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence 799999999999999999879999995 999999999999988764
No 57
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.14 E-value=3.9e-11 Score=98.77 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=49.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhccCCCCCCCCccccc
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT 187 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~~~k~~rr~si~d~t 187 (297)
++++||+|||++|++++++||. +|..||+ +|++||..||+.||++|+. ...++...+.-+|..
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~---p~~~~~~WT~eEd~~ 72 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLA---PSISHTPWTAEEDAL 72 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHTS---TTSCCSCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhcc---cccccccCCHHHHHH
Confidence 4458999999999999999999 9999995 9999999999999887753 222333444444443
No 58
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.13 E-value=5.1e-11 Score=98.62 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 169 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~ 169 (297)
+||+|||++|+.+|++||.++|..||. +|++||..||+.||++|+.
T Consensus 4 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp SCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhccC
Confidence 899999999999999999779999995 9999999999999987753
No 59
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.13 E-value=9.6e-11 Score=96.46 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC----CCCCHHHHHHHHHHhhhh
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADV----PGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V----pGRT~~Qcr~rY~~l~~d 60 (297)
....+.||.|||++|..++++|+.+. |.+|+..+ ++||..||++||..++..
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~---W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGR---WRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSC---HHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC---hHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34567899999999999999999864 99999974 899999999999988753
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=7.4e-11 Score=86.02 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=42.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhh--hhcCCCCHHHHHHHHHHHHH
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISR--NFVVTRTPTQVASHAQKYFI 169 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar--~~v~tRT~~Q~~sh~qky~~ 169 (297)
++.+||+||++.|+++|++||+ +|..|+. .|+.+||...++++|+.+.+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 3448999999999999999999 9999993 18899999999999876543
No 61
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.08 E-value=9.1e-11 Score=88.47 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=46.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
|.....+.||+|||++|.+++++|+.. |.+||++| |||..||++||..|.++
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 455677899999999999999999975 99999999 99999999999977653
No 62
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.9e-10 Score=83.17 Aligned_cols=44 Identities=27% Similarity=0.565 Sum_probs=40.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA 164 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~ 164 (297)
+...||+||+++|+++|.+||+ +|..|++++|++||..||..+|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence 3458999999999999999999 9999996579999999999885
No 63
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=99.05 E-value=1.1e-09 Score=105.00 Aligned_cols=132 Identities=23% Similarity=0.339 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-CCCHHHHHHHHHHhhhhh----------hhcccCCCC--------
Q 022439 10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-GKSLEEIKQHYELLVDDV----------NRIESGCVP-------- 70 (297)
Q Consensus 10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-GRT~~Qcr~rY~~l~~dv----------~~IesG~v~-------- 70 (297)
..||+.|...|++|+++||.+. .+.||..|. |||.+||+++++.+.+-. ..||.|...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d---~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~ 200 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNS---IQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ 200 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTC---HHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhH---HHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999965 999999998 999999998777664322 233433110
Q ss_pred ------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCC---
Q 022439 71 ------LPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGK--- 141 (297)
Q Consensus 71 ------lp~y~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~--- 141 (297)
+..|...-... ....+. ...++..||+|||+.||.+|.+||-
T Consensus 201 ~~L~~Ki~~y~~P~~~L----------~i~y~~-------------------~~~k~k~yteeEDRfLL~~l~k~G~~~~ 251 (374)
T 2y9y_A 201 EALRRKLSEYKNPFFDL----------KLKHPP-------------------SSNNKRTYSEEEDRFILLMLFKYGLDRD 251 (374)
T ss_dssp HHHHHHHTTCSSHHHHC----------CCSSCC-------------------CCSSCCCSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHccCCHHHc----------eeccCC-------------------CCCCCCccCHHHHHHHHHHHHHhccCCC
Confidence 11111100000 000000 0013457999999999999999999
Q ss_pred Cchhhh-----------hhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439 142 GDWRSI-----------SRNFVVTRTPTQVASHAQKYFIRLNS 173 (297)
Q Consensus 142 g~W~~I-----------ar~~v~tRT~~Q~~sh~qky~~r~~~ 173 (297)
|.|..| ..+|+.+||+.+|..|+.-++.-+.+
T Consensus 252 g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeK 294 (374)
T 2y9y_A 252 DVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEK 294 (374)
T ss_dssp CCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 899999 45679999999999998876665543
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.03 E-value=1.5e-10 Score=87.17 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---CchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439 123 AWTEDEHRLFLLGLDKYGK---GDWRSISRNFVVTRTPTQVASHAQKY 167 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~---g~W~~Iar~~v~tRT~~Q~~sh~qky 167 (297)
.||.||+++|+.||..|++ ++|.+||. +|++||..||+.||+.+
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 7999999999999999997 47999995 99999999999997644
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=3.5e-10 Score=85.02 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHHH
Q 022439 122 IAWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQKY 167 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qky 167 (297)
..||.||+++|+.+|.+|+.| +|.+||. ++ +||..||++||+++
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence 489999999999999999854 7999995 77 89999999998876
No 66
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.99 E-value=6.3e-10 Score=83.09 Aligned_cols=44 Identities=30% Similarity=0.494 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHH
Q 022439 121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ 165 (297)
Q Consensus 121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~q 165 (297)
...||+||.++|+++|.+||+ +|..|++++|++||..||..+|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence 348999999999999999999 99999965799999999999864
No 67
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.46 E-value=1e-10 Score=91.12 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
....+.||.|||.+|..++..||.+ |..||.+|+|||..||++||..++..
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~----W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4456789999999999999999874 99999999999999999999977654
No 68
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.86 E-value=1e-09 Score=99.37 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCc-----hhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439 121 GIAWTEDEHRLFLLGLDKYGKGD-----WRSISRNFVVTRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 121 ~~~WT~eEd~~ll~~l~k~G~g~-----W~~Iar~~v~tRT~~Q~~sh~qky~~r~ 171 (297)
..+||+|||++||+++++||..+ |..||+ ++++||++||++||..|+.+.
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhh
Confidence 34899999999999999999832 999996 999999999999999988664
No 69
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=98.83 E-value=4.4e-08 Score=86.41 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh--CCCCCHHHHHHHHHHhhhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAAD--VPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~--VpGRT~~Qcr~rY~~l~~d 60 (297)
....||+.|...|.+|+.+||.- .+||+.|++. |.+||.+++++.|..+.+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 34679999999999999999952 3579999865 6799999999988876543
No 70
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.83 E-value=4.8e-09 Score=80.87 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh----CCCCCHHHHHHHHHHhhhh
Q 022439 10 SVWTKEQDKAFENALVSYPEDASDRWEKIAAD----VPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~----VpGRT~~Qcr~rY~~l~~d 60 (297)
+.||.|||++|..++++||.+. |.+|+.. |+|||..||++||..++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~---W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSC---HHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCC---cHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999864 9999996 8999999999999988753
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.81 E-value=6.2e-10 Score=83.55 Aligned_cols=44 Identities=30% Similarity=0.608 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHH
Q 022439 121 GIAWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQ 165 (297)
Q Consensus 121 ~~~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~q 165 (297)
+..||.||+++|+.||.+|+++ +|.+||. .|++||..+|+.||+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence 3489999999999999999986 8999995 999999999999976
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.6e-08 Score=73.84 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhh-hCCCCCHHHHHHHHHHh
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAA-DVPGKSLEEIKQHYELL 57 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~-~VpGRT~~Qcr~rY~~l 57 (297)
......||+||.++|+++|++|+.+ |.+||+ +|++||..||+++|..-
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhcc
Confidence 3445689999999999999999997 999998 69999999999999743
No 73
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.66 E-value=4.8e-08 Score=72.81 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhh-hCCCCCHHHHHHHHHHh
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAA-DVPGKSLEEIKQHYELL 57 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~-~VpGRT~~Qcr~rY~~l 57 (297)
.....||+||.++|+++|++|+.+ |..|++ +|++||..||.++|..-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhh
Confidence 455689999999999999999997 999999 69999999999999843
No 74
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.66 E-value=3.8e-08 Score=78.99 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=46.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC----CCCCHHHHHHHHHHhhhh
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADV----PGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V----pGRT~~Qcr~rY~~l~~d 60 (297)
.....+.||.|||++|..+|++|+.+. |.+|+..+ ++||..||++||..++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~---W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGR---WRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSS---HHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC---hHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 345677999999999999999999864 99999965 899999999999988753
No 75
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.63 E-value=4.4e-08 Score=77.08 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=41.4
Q ss_pred hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439 117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA 164 (297)
Q Consensus 117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~ 164 (297)
.+.....||+||+++|++++.+||+ +|..|+ .++++||..||..+|
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYY 84 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence 3445568999999999999999999 999999 599999999999985
No 76
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=98.62 E-value=9.6e-08 Score=70.08 Aligned_cols=53 Identities=32% Similarity=0.442 Sum_probs=44.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCC--chhhhhhhh--cCCCCHHHHHHHHHHHHHHHhc
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGKG--DWRSISRNF--VVTRTPTQVASHAQKYFIRLNS 173 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~g--~W~~Iar~~--v~tRT~~Q~~sh~qky~~r~~~ 173 (297)
.+..||+|.|+.|++||+++|.. .|+.|-+ + |++.|..||+||.|||+..+.+
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 44589999999999999999952 2889974 5 4578999999999999998864
No 77
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.61 E-value=3.2e-08 Score=88.94 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
....||.||+++|+.||++|+.+ |..||..|++||..||+.+|......
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999986 99999999999999999999866543
No 78
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.58 E-value=1.1e-07 Score=69.27 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHh---hhCCCCCHHHHHHHHHHhhh
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIA---ADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA---~~VpGRT~~Qcr~rY~~l~~ 59 (297)
......||+|||+.|.+.|.+|+.. |..|+ .++++||..+++++|..|..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 3466789999999999999999984 99999 57889999999999998875
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.49 E-value=1.6e-07 Score=73.80 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439 9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL 57 (297)
Q Consensus 9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l 57 (297)
...||+||..+|++++..||.+ |.+||++|++||..||.++|..-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhcc
Confidence 4579999999999999999997 99999999999999999999743
No 80
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.05 E-value=4.3e-06 Score=60.24 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHh--------CCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439 122 IAWTEDEHRLFLLGLDKY--------GKGDWRSISRNFVVTRTPTQVASHAQKYF 168 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~--------G~g~W~~Iar~~v~tRT~~Q~~sh~qky~ 168 (297)
.+||+|||++|++.|.+| |+.-|+.|++..++.+|-.+|+.||.|++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 489999999999999999 65579999954799999999999987754
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.99 E-value=1.3e-05 Score=62.89 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC-----CCCCHHHHHHHHHHhhhhhh
Q 022439 10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADV-----PGKSLEEIKQHYELLVDDVN 62 (297)
Q Consensus 10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V-----pGRT~~Qcr~rY~~l~~dv~ 62 (297)
..||+||+..|.+++.+|+.. |-.|+..+ ++||++++++||..+...+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR----W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR----FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC----eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999984 99999999 48999999999998776553
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.98 E-value=5.8e-06 Score=81.73 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~ 59 (297)
....||.||..+|+.+|.+|+.+ |..||..|++||..||+.+|.....
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999986 9999999999999999999976543
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.97 E-value=1.4e-05 Score=62.74 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhhhhhc-----CCCCHHHHHHHHHHHHHHHhc
Q 022439 122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFV-----VTRTPTQVASHAQKYFIRLNS 173 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v-----~tRT~~Q~~sh~qky~~r~~~ 173 (297)
.+||.||+..|++++++||. +|..|+. .+ ++||..++++|+....+++..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999 9999996 66 589999999998776666653
No 84
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.89 E-value=3e-05 Score=60.25 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~ 59 (297)
..-.||+|||..+..++++-+. +.+.|..||+.|.+||..||.+||+.|..
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3447999999999999999876 34569999999999999999999997765
No 85
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.80 E-value=0.0002 Score=66.03 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh--CCCCCHHHHHHHHHHhh
Q 022439 9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAAD--VPGKSLEEIKQHYELLV 58 (297)
Q Consensus 9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~--VpGRT~~Qcr~rY~~l~ 58 (297)
.+.||..|...|.+++.+|+.- .+||+.|+.. |..|+.+++++-|..|.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 4679999999999999999973 3589999654 56899999888887653
No 86
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.79 E-value=4.8e-05 Score=54.70 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-----CChhHHHHhh-hCCCCCHHHHHHHHHHhh
Q 022439 9 SSVWTKEQDKAFENALVSYPED-----ASDRWEKIAA-DVPGKSLEEIKQHYELLV 58 (297)
Q Consensus 9 ~~~WT~EEdk~Le~Ala~~p~~-----~~~rWekIA~-~VpGRT~~Qcr~rY~~l~ 58 (297)
+..||.|||++|.+.|+.|... .+.-|..||+ .++++|-..|++||.+.+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999432 4568999999 899999999999998654
No 87
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.92 E-value=4.2e-06 Score=61.74 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD 59 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~ 59 (297)
..-.||+|||..+..++++-+.. ++.|..||..| +||..||.+||+.|..
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 34469999999998888887763 36799999999 8999999999997764
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.72 E-value=6.4e-05 Score=58.44 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=44.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC--CchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 120 KGIAWTEDEHRLFLLGLDKYGK--GDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G~--g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
+-.-||.|||+.+|...++-|. ..|..||+ .+.+||+.||++|+|.+++-+.
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHHHHHH
Confidence 3457999999999999999985 37999996 8999999999999988766554
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.55 E-value=2e-05 Score=58.13 Aligned_cols=47 Identities=26% Similarity=0.487 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--chhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022439 122 IAWTEDEHRLFLLGLDKYGKG--DWRSISRNFVVTRTPTQVASHAQKYFIR 170 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g--~W~~Iar~~v~tRT~~Q~~sh~qky~~r 170 (297)
.-||.|||+.+|...++-|.. .|..||+ .+ +||+.||.+|++.++.-
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 379999999999999998863 7999996 67 89999999997765543
No 90
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.31 E-value=0.00053 Score=53.62 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-----CCCHHHHHHHHHHhhhhhhh
Q 022439 10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-----GKSLEEIKQHYELLVDDVNR 63 (297)
Q Consensus 10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-----GRT~~Qcr~rY~~l~~dv~~ 63 (297)
..||+||...|-.++..|+.. |-.|+.... .||++|+++||..+...+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR----w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR----FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999984 999999985 69999999999987766543
No 91
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.18 E-value=0.00049 Score=52.39 Aligned_cols=57 Identities=11% Similarity=0.359 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHC------CCCCChhHHHHhhhCC----CCCHHHHHHHHHHhhhhhhhcc
Q 022439 9 SSVWTKEQDKAFENALVSY------PEDASDRWEKIAADVP----GKSLEEIKQHYELLVDDVNRIE 65 (297)
Q Consensus 9 ~~~WT~EEdk~Le~Ala~~------p~~~~~rWekIA~~Vp----GRT~~Qcr~rY~~l~~dv~~Ie 65 (297)
...||.+|..+|..+.... +......|+.||..|- .||++||+.+|+.|...-+.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999988653 1224458999999976 6999999999999988755443
No 92
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.83 E-value=0.0014 Score=49.75 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHH----hCCC-----chhhhhhhhcC----CCCHHHHHHHHHHHHHHHh
Q 022439 122 IAWTEDEHRLFLLGLDK----YGKG-----DWRSISRNFVV----TRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k----~G~g-----~W~~Iar~~v~----tRT~~Q~~sh~qky~~r~~ 172 (297)
..||.+|-.+||++... |..+ .|..||. .+. .||+.||+..|.++...-.
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999865 2221 6999995 443 7999999999988766654
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.76 E-value=0.0024 Score=59.77 Aligned_cols=48 Identities=29% Similarity=0.548 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~ 171 (297)
.||..+...|+.|+.+||+.+|..||. .|.++|..+|+.+++-|+.+-
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence 699999999999999999999999995 999999999998888777665
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.70 E-value=0.0038 Score=48.79 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhhhhhc----CCCCHHHHHHHHHHHHHHHhcc
Q 022439 122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFV----VTRTPTQVASHAQKYFIRLNSM 174 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v----~tRT~~Q~~sh~qky~~r~~~~ 174 (297)
..||.||...|++++++|+. +|--|+..|- ..||..+++.|+....+++...
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999 9999985343 3799999999987777776543
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.98 E-value=0.0082 Score=52.38 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=42.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhC--CCchhhhhhh-hcCCCCHHHHHHHHHHHHHHH
Q 022439 120 KGIAWTEDEHRLFLLGLDKYG--KGDWRSISRN-FVVTRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 120 k~~~WT~eEd~~ll~~l~k~G--~g~W~~Iar~-~v~tRT~~Q~~sh~qky~~r~ 171 (297)
+-..||+.|-+.|+.++.+|| .++|..|+++ -+..||..+++..+..+..+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 334799999999999999999 5799999742 267999999998877766553
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.45 E-value=0.038 Score=40.20 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhhhhh
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLVDDV 61 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~~dv 61 (297)
...+-.||.|.-+.|..||..++.+ .--+.+|.+.+. |.|..+|+-|.+++.-.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4456789999999999999999843 234788877754 899999998887665443
No 97
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=91.67 E-value=0.24 Score=47.46 Aligned_cols=48 Identities=25% Similarity=0.482 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcC-CCCHHHHHHHHHHHHHHH
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVV-TRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~-tRT~~Q~~sh~qky~~r~ 171 (297)
.||.-+=..|+.|+.+||+.+...||. .|. ++|..+|+.+++-|+.|-
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhh
Confidence 699999999999999999999999995 887 999999998777666554
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=80.81 E-value=3.5 Score=37.74 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhC--CCchhhhhh-hhcCCCCHHHHHHHHH
Q 022439 123 AWTEDEHRLFLLGLDKYG--KGDWRSISR-NFVVTRTPTQVASHAQ 165 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G--~g~W~~Iar-~~v~tRT~~Q~~sh~q 165 (297)
.||+.|-+.|+.+|.+|| .++|..|++ .-+..|+...++.-++
T Consensus 5 ~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 5 SIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp CCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 799999999999999999 368999942 2467888887775444
No 99
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=80.62 E-value=5.4 Score=30.15 Aligned_cols=49 Identities=33% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-chh--------------hhhh----hhcCCCCHHHHHHHHHHHHHH
Q 022439 122 IAWTEDEHRLFLLGLDKYGKG-DWR--------------SISR----NFVVTRTPTQVASHAQKYFIR 170 (297)
Q Consensus 122 ~~WT~eEd~~ll~~l~k~G~g-~W~--------------~Iar----~~v~tRT~~Q~~sh~qky~~r 170 (297)
.-|+++=+..|++||..|..- .++ .|+. ..-..||..||.||-|-+-++
T Consensus 7 ~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 7 GVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp CCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 479999999999999998742 222 1221 134679999999997754333
No 100
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=63.54 E-value=11 Score=28.52 Aligned_cols=55 Identities=24% Similarity=0.458 Sum_probs=38.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCC------------ChhHHHHhhhCC-----CCCHHHHHHHHHHhhhh
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDA------------SDRWEKIAADVP-----GKSLEEIKQHYELLVDD 60 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~------------~~rWekIA~~Vp-----GRT~~Qcr~rY~~l~~d 60 (297)
......|+++=+..|.+||+.|+... ..|=+.||.+|- .||.+||--|-+.|.+.
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 34567899999999999999998641 113345555544 47888888888766543
No 101
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=53.66 E-value=54 Score=24.03 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=40.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
.+++....|.++...|++.+...+--+...=+.||..+ |=|..||+.=|.
T Consensus 3 ~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFq 52 (76)
T 2ecc_A 3 SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFG 52 (76)
T ss_dssp CSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhH
Confidence 35677889999999999999987665556778899998 799999875444
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=50.25 E-value=16 Score=28.74 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=22.5
Q ss_pred chhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439 143 DWRSISRNFVVTRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 143 ~W~~Iar~~v~tRT~~Q~~sh~qky~~r~ 171 (297)
.|..|++ .+.--...+++++|.+|+...
T Consensus 72 ~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 72 QWSMVAQ-RLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp CHHHHHH-HHTSCCTTHHHHHHHHHHSHH
T ss_pred cHHHHHH-HhCCChHHHHHHHHHHHHHHH
Confidence 8999996 666656889999999987554
No 103
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=49.02 E-value=8.8 Score=29.11 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=34.5
Q ss_pred hhccCCCCCHHHHH-----------HHHHHHHHhCCC----chhh---hhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439 117 ERRKGIAWTEDEHR-----------LFLLGLDKYGKG----DWRS---ISRNFVVTRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 117 ~~kk~~~WT~eEd~-----------~ll~~l~k~G~g----~W~~---Iar~~v~tRT~~Q~~sh~qky~~r~ 171 (297)
+..+++.||.|+.+ -|+.-|+.+|.- .|+. |. +..+++...|+.--|.++|-.-
T Consensus 9 ~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniK-NVaKtanK~qLiaAY~~lfE~~ 80 (88)
T 2lc3_A 9 ENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNK-SIRKNRNCSQLIAAYKDFCEHG 80 (88)
T ss_dssp CSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHH-HHHHHSCHHHHHHHHHHHHHHT
T ss_pred ccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHH-HHHhcCcHHHHHHHHHHHHhcc
Confidence 34466799999933 345556665542 2322 34 4556888999998888777653
No 104
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=45.51 E-value=28 Score=28.27 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 15 EQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 15 EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
+-|..+.++|+..+.-+ |..||+.+ |-|...|++|.+.|.+.
T Consensus 3 ~~d~~il~~L~~~~~~s---~~~la~~l-g~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLA---VADLAKKV-GLSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSC---HHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCC---HHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44667777787766654 99999999 79999999999988763
No 105
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.02 E-value=83 Score=22.24 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=39.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
.......+|.++...|+.++...+.-+...=+.||..+ |-|..||+.=|.+
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqN 58 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSD 58 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHH
Confidence 34456789999999999999886554445567889988 7899988766654
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=41.45 E-value=32 Score=27.42 Aligned_cols=41 Identities=7% Similarity=0.205 Sum_probs=29.1
Q ss_pred HHHHHHHCCC----CCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 20 FENALVSYPE----DASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 20 Le~Ala~~p~----~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
|-.+|...+. ...+.|..||..|.--....++.+|..++-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 4445555543 2346899999999866688899999876554
No 107
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.82 E-value=54 Score=25.44 Aligned_cols=36 Identities=8% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADV 42 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V 42 (297)
..+..||.+...+|++++..-..-+....+.||..+
T Consensus 8 r~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 8 RNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 445689999999999999876654556789999998
No 108
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.78 E-value=84 Score=22.38 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
.....+|.++...|+.++...+.-+...-+.||..+ |-+..+|.-=|.+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 57 (80)
T 2dms_A 9 RERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI-NLPESRVQVWFKN 57 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHhhhhhHH
Confidence 345679999999999999886654445668899998 7899988766654
No 109
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=40.58 E-value=41 Score=25.71 Aligned_cols=29 Identities=7% Similarity=0.290 Sum_probs=21.0
Q ss_pred chhhhhhhhcCCCC----HHHHHHHHHHHHHHHh
Q 022439 143 DWRSISRNFVVTRT----PTQVASHAQKYFIRLN 172 (297)
Q Consensus 143 ~W~~Iar~~v~tRT----~~Q~~sh~qky~~r~~ 172 (297)
.|..|++ .+.--. ..+++++|.+|+....
T Consensus 67 ~W~~va~-~lg~~~~~~~~~~lk~~Y~k~L~~yE 99 (107)
T 2lm1_A 67 KWAKVAN-RMQYPSSKSVGATLKAHYERILHPFE 99 (107)
T ss_dssp THHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 8999996 554433 4678889988876654
No 110
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.30 E-value=90 Score=21.61 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
.....+|.++...|+..+...+.-+...-+.||..+ |-|..||..=|.+
T Consensus 9 r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 57 (70)
T 2e1o_A 9 GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML-QLSERQVKTWFQN 57 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CCCHHHhhHhhHh
Confidence 355679999999999999886655555668899998 7899988765543
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=39.55 E-value=23 Score=28.22 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=24.4
Q ss_pred chhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439 143 DWRSISRNFVVTRTPTQVASHAQKYFIRLNS 173 (297)
Q Consensus 143 ~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~ 173 (297)
.|..|++ .+.--...+++++|.+|+.....
T Consensus 71 ~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 71 QWSMVAQ-RLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHCCChHHHHHHHHHHHHHHHHH
Confidence 7999996 66655689999999999877654
No 112
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=39.30 E-value=80 Score=21.20 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
......+|.++...|+..+...+.-+...-+.||..+ |-|..+|.-=|.
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 52 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL-GLNEAQIKIWFK 52 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHhh
Confidence 3456679999999999999886654545668899988 788888875554
No 113
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=38.89 E-value=71 Score=21.40 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
+...+|.++...|+..+...+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 49 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI-GLTEARIQVWFQN 49 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CcCHHHHHHHhhh
Confidence 45679999999999999886554444557889988 7899888765543
No 114
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.88 E-value=31 Score=27.12 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHHhC-------CCchhhhhhhhcCCCC----HHHHHHHHHHHHHHHh
Q 022439 131 LFLLGLDKYG-------KGDWRSISRNFVVTRT----PTQVASHAQKYFIRLN 172 (297)
Q Consensus 131 ~ll~~l~k~G-------~g~W~~Iar~~v~tRT----~~Q~~sh~qky~~r~~ 172 (297)
.|...|.+.| ...|..|++ .+.--. ..+++++|.+|+....
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3445566666 128999996 554432 5678899988866543
No 115
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.36 E-value=1e+02 Score=21.30 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
.....+|.++...|+.++...+.-+...-+.||..+ |-|..||.-=|.
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFq 56 (70)
T 2dmu_A 9 RHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV-HLREEKVEVWFK 56 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CCCHHHeehccc
Confidence 345679999999999999886654545668899998 789998876554
No 116
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=36.95 E-value=59 Score=24.15 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--------------CCCHHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--------------GKSLEEIKQHYEL 56 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--------------GRT~~Qcr~rY~~ 56 (297)
.....||.++...|++.+...+.-+...-+.||..+. .-|..+|..=|++
T Consensus 9 r~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqN 72 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFAN 72 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHH
Confidence 3455799999999999999865544456688898883 1777887655543
No 117
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=36.69 E-value=41 Score=26.62 Aligned_cols=40 Identities=13% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHHHHHhCC-------CchhhhhhhhcCCCC----HHHHHHHHHHHHHHHh
Q 022439 132 FLLGLDKYGK-------GDWRSISRNFVVTRT----PTQVASHAQKYFIRLN 172 (297)
Q Consensus 132 ll~~l~k~G~-------g~W~~Iar~~v~tRT----~~Q~~sh~qky~~r~~ 172 (297)
|..+|.+.|= ..|..|++ .+.--+ ..+++++|.+|+....
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4445666551 28999996 554433 3678888888876654
No 118
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.62 E-value=87 Score=22.35 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
....+|.++...|+..+...+.-+...-+.||..+ |-|..||+-=|++
T Consensus 20 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqN 67 (80)
T 2dmt_A 20 SRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL-GLSQLQVKTWYQN 67 (80)
T ss_dssp SCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHeeeccHH
Confidence 34469999999999999886654445568889988 7899988766653
No 119
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.56 E-value=96 Score=20.82 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 022439 3 VDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV 61 (297)
Q Consensus 3 ~~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv 61 (297)
.+.......+|+.|-+.|.- + +...+ ...||+.+ |.|..-|+.+...+...+
T Consensus 3 ~~~~~~~~~L~~~e~~il~~-~--~~g~s---~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 3 EKEFQSKPLLTKREREVFEL-L--VQDKT---TKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp -----CCCCCCHHHHHHHHH-H--TTTCC---HHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCCCHHHHHHHHH-H--HcCCC---HHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34445567799999998877 3 22223 78999998 789888888887766654
No 120
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=35.82 E-value=94 Score=20.50 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+...+.-+...-+.||..+ |-|..+|.-=|.
T Consensus 3 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 49 (58)
T 1ig7_A 3 PRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL-SLTETQVKIWFQ 49 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHhhhhhh
Confidence 35679999999999999886654545668899998 789998876554
No 121
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=34.91 E-value=61 Score=26.62 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 15 EQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 15 EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
+-|..+..+|+..+.-+ |..||+.+ |-|...|++|.+.|.+.
T Consensus 27 ~~d~~IL~~L~~~~~~s---~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAP---LREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCC---HHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCC---HHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 34556667788776654 99999999 79999999999988753
No 122
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=34.62 E-value=1.1e+02 Score=21.01 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
.....+|.++...|+..+...+.-+...-+.||..+ |-|..+|..=|.+
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 57 (70)
T 2da1_A 9 RPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS-GLPQKVIKHWFRN 57 (70)
T ss_dssp SCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh-CCCHHHHHHHhhh
Confidence 355679999999999999876554445678899998 7899888765553
No 123
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.33 E-value=88 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=26.9
Q ss_pred HHHHHHHhC-------CCchhhhhhhhcCCCC----HHHHHHHHHHHHHHHhc
Q 022439 132 FLLGLDKYG-------KGDWRSISRNFVVTRT----PTQVASHAQKYFIRLNS 173 (297)
Q Consensus 132 ll~~l~k~G-------~g~W~~Iar~~v~tRT----~~Q~~sh~qky~~r~~~ 173 (297)
|...|.+.| ...|..|++ .+.--+ ..+++++|.+|+.....
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 444556655 128999996 554432 36788999998776654
No 124
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=34.04 E-value=48 Score=26.28 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHhCC-------CchhhhhhhhcCC-CC----HHHHHHHHHHHHHHHh
Q 022439 132 FLLGLDKYGK-------GDWRSISRNFVVT-RT----PTQVASHAQKYFIRLN 172 (297)
Q Consensus 132 ll~~l~k~G~-------g~W~~Iar~~v~t-RT----~~Q~~sh~qky~~r~~ 172 (297)
|-..|.+.|= ..|..|++ .+.- .+ ..+++++|.+|+....
T Consensus 57 Ly~~V~~~GG~~~V~~~k~W~~Va~-~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 57 LYNLVIARGGLVDVINKKLWQEIIK-GLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHH-HTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhcCHHHcCccCcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4445666661 28999996 4542 22 5788999999876654
No 125
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.65 E-value=1.3e+02 Score=21.32 Aligned_cols=48 Identities=6% Similarity=0.167 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
.....+|.++...|+..+...+.-+...-+.||..+ |-+..+|+-=|.
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 56 (80)
T 2dmq_A 9 RMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-GLTKRVLQVWFQ 56 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHhhHccH
Confidence 455679999999999999887655555678999998 788888875544
No 126
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=33.23 E-value=1.1e+02 Score=20.43 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+...+--+...-+.||..+ |-|..+|.-=|.
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 50 (60)
T 1jgg_A 4 YRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL-NLPESTIKVWFQ 50 (60)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHhhH
Confidence 35679999999999999886654445668899988 788888876554
No 127
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=32.98 E-value=1.2e+02 Score=20.70 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=38.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
......+|.++...|+.++...+.-+...-+.||..+ |-|..+|.-=|.+
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 53 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT-GLSPRVIRVWFQN 53 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHHHHHhHH
Confidence 3456679999999999999886654445567889988 7888888765543
No 128
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.75 E-value=1.2e+02 Score=20.89 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
.....+|.++...|+..+...+.-+...-+.||..+ |-|..||.-=|.+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 57 (70)
T 2cra_A 9 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT-SLSERQITIWFQN 57 (70)
T ss_dssp CSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhhHhhHh
Confidence 345679999999999999886654445568899998 7999998766654
No 129
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.37 E-value=1.1e+02 Score=21.71 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
.....+|.++...|+..+...+.-+...-+.||..+ |-|..+|+-=|.
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFq 56 (80)
T 2cue_A 9 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI-DLPEARIQVWFS 56 (80)
T ss_dssp CCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhhHHHH
Confidence 345579999999999999876554445568899998 789888875443
No 130
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.29 E-value=1e+02 Score=24.14 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 17 DKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 17 dk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
|..+..+|+..+.-+ +..||+.+ |-|..-|.++.+.|.+.
T Consensus 11 d~~il~~L~~~~~~s---~~ela~~l-g~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 11 DMQLVKILSENSRLT---YRELADIL-NTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHCTTCC---HHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---HHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 445556777776654 99999999 78999999999988754
No 131
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=30.88 E-value=1.3e+02 Score=20.64 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
.....+|.++...|+..+...+.-+...-+.||..+ |-|..+|.-=|.+
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 57 (70)
T 2da2_A 9 SSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL-NLPTRVIVVWFQN 57 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHhHHhhHh
Confidence 345679999999999999886654555678899998 7899888765553
No 132
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=29.98 E-value=1.1e+02 Score=20.31 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+...+--+...-+.||..+ |-|..||..=|.
T Consensus 8 ~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~-~l~~~qV~~WFq 54 (61)
T 1akh_A 8 GKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC-GITPLQVRVWFI 54 (61)
T ss_dssp ----CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 44579999999999999987655555668889988 788888876554
No 133
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.86 E-value=29 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=19.1
Q ss_pred chhhhhhhhcCC-C----CHHHHHHHHHHHHHH
Q 022439 143 DWRSISRNFVVT-R----TPTQVASHAQKYFIR 170 (297)
Q Consensus 143 ~W~~Iar~~v~t-R----T~~Q~~sh~qky~~r 170 (297)
.|..|++ .+.- . ...+++++|.+|+..
T Consensus 56 ~W~~Va~-~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 56 QWKHIYD-ELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp THHHHHH-HHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred cHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 8999996 4442 2 246889998888644
No 134
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.59 E-value=1.4e+02 Score=20.68 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439 4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL 57 (297)
Q Consensus 4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l 57 (297)
+.......+|.++...|+..+....--+...=+.||..+ |-+..||+-=|++-
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 57 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT-GLTKGEIKKWFSDT 57 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CcCHHHeeeCChhH
Confidence 345567789999999999999875543334457788888 78888887666543
No 135
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=29.55 E-value=1.3e+02 Score=23.48 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHH
Q 022439 123 AWTEDEHRLFLLGLD 137 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~ 137 (297)
.|+..|.+.+|+++.
T Consensus 103 E~SK~~V~~~i~~~L 117 (125)
T 3o2i_A 103 ELSKTEVRRRINAFL 117 (125)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh
Confidence 799999999998764
No 136
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=29.49 E-value=42 Score=26.73 Aligned_cols=43 Identities=12% Similarity=0.399 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CchhhhhhhhcC-CC----CHHHHHHHHHHHHHHHhcc
Q 022439 131 LFLLGLDKYGK-------GDWRSISRNFVV-TR----TPTQVASHAQKYFIRLNSM 174 (297)
Q Consensus 131 ~ll~~l~k~G~-------g~W~~Iar~~v~-tR----T~~Q~~sh~qky~~r~~~~ 174 (297)
.|...|.+.|= ..|..|++ .+. .. ....++++|.+|+......
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~-~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~ 100 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLAD-MLRIPKTAQDRLAKLQEAYCQYLLSYDSL 100 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHH-HTCCCTTCSSHHHHHHHHHHTTHHHHHHC
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHhHHHHCc
Confidence 45555666661 28999996 443 22 2467899999998776543
No 137
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=28.80 E-value=58 Score=26.53 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHhCC-------CchhhhhhhhcCC-C----CHHHHHHHHHHHHHHHh
Q 022439 132 FLLGLDKYGK-------GDWRSISRNFVVT-R----TPTQVASHAQKYFIRLN 172 (297)
Q Consensus 132 ll~~l~k~G~-------g~W~~Iar~~v~t-R----T~~Q~~sh~qky~~r~~ 172 (297)
|..+|.+.|= ..|..|++ .+.- . ...+++++|.+|+....
T Consensus 69 Ly~~V~~~GG~~~V~~~~~W~~Va~-~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 69 LYVLVTEKGGLVEVINKKLWREITK-GLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHTCHHHHHHHTCHHHHHH-HTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHhCCHHHhcccCcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 4444556551 28999996 4443 2 24688899998866554
No 138
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.79 E-value=1.4e+02 Score=20.50 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
.....+|.++...|+.++...+.-+...=+.||..+ |-|..+|..=|.+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 57 (70)
T 2djn_A 9 KPRTIYSSFQLAALQRRFQKTQYLALPERAELAASL-GLTQTQVKIWFQN 57 (70)
T ss_dssp CSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 345579999999999999876554444568899998 7899998766654
No 139
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=28.72 E-value=1.4e+02 Score=21.18 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+...+.-+...-..||..+ |-+..+|..=|.
T Consensus 21 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFq 67 (81)
T 1fjl_A 21 SRTTFSASQLDELERAFERTQYPDIYTREELAQRT-NLTEARIQVWFQ 67 (81)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 44569999999999999886554445567899988 789998876554
No 140
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=28.04 E-value=1.3e+02 Score=20.58 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
....+|.++...|+..+...+.-+...-+.||..+ |-|..+|..=|.+
T Consensus 4 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 51 (67)
T 2k40_A 4 PRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL-NLELDRIQIWFQN 51 (67)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhhHhhHh
Confidence 45679999999999999876554445568899988 7899988766553
No 141
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=27.54 E-value=1.4e+02 Score=20.05 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
.....+|.++...|+..+...+.-+...=..||..+ |-|..+|.-=|.
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFq 52 (63)
T 2h1k_A 5 RTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML-NLTERHIKIWFQ 52 (63)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHHHH
Confidence 345679999999999999886554445568889988 789988875554
No 142
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=27.49 E-value=76 Score=22.43 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
...+|.++...|+.++...+.-+...-+.||..+ |-+..+|+-=|++
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 67 (80)
T 2da3_A 21 RTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV-GLKKRVVQVWFQN 67 (80)
T ss_dssp CSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhHHHhHH
Confidence 4468999999999999886554445567899998 7888888765553
No 143
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=27.46 E-value=1.6e+02 Score=20.67 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+.....-+...-+.||..+ |-|..+|.-=|.
T Consensus 12 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 58 (77)
T 1nk2_P 12 RRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI-RLTPTQVKIWFQ 58 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh-CCCHHHHHHHhH
Confidence 44579999999999999886654445568899998 789988875554
No 144
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=27.39 E-value=1.3e+02 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+...+.-+...-..||..+ |-|..+|.-=|.
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 51 (68)
T 1zq3_P 5 TRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL-ALGTAQVKIWFK 51 (68)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHhhH
Confidence 45679999999999999876554445668899988 788888875444
No 145
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=27.04 E-value=1e+02 Score=28.29 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL 171 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~ 171 (297)
++-+.+-+.|-++++..|......|. .+-+||..|++.-.+.|....
T Consensus 93 ~~~~~DA~~L~~A~~g~Gtde~~lie--IL~tRs~~ql~~i~~~Y~~~y 139 (327)
T 1w3w_A 93 PPYRYEAKELHDAMKGLGTKEGVIIE--ILASRTKNQLREIMKAYEEDY 139 (327)
T ss_dssp CTTHHHHHHHHHHHHSSSCCHHHHHH--HHHHSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCCHHHHHH--HHHhCCHHHHHHHHHHHHHHh
Confidence 35567777888888877763343333 788999999886666655443
No 146
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=26.27 E-value=1.3e+02 Score=20.55 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=36.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
.....+|.++...|+..+...+.-+...-+.||..+ |-|..+|.-=|.
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 52 (68)
T 1yz8_P 5 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT-NLTEARVRVWFK 52 (68)
T ss_dssp CSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT-TSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 345679999999999999875443334467899998 789988875554
No 147
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.79 E-value=1.2e+02 Score=20.11 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
.+++.|-+.|.. .-..|. .+..||. .+ +-|...|+++..+-..++.
T Consensus 15 ~L~~~~r~il~l-~~~~g~-s~~eIA~-~l-gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLL-TQLLGL-SYADAAA-VC-GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHH-HHTSCC-CHHHHHH-HH-TSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHH-HHHcCC-CHHHHHH-HH-CcCHHHHHHHHHHHHHHHH
Confidence 467666655543 335677 9999995 44 5788889887666666654
No 148
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.46 E-value=1.2e+02 Score=23.81 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 17 DKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 17 dk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
|..+..+|+..+.-+ +..||+.+ |-|..-|.++.+.|.+.
T Consensus 9 ~~~il~~L~~~~~~s---~~ela~~l-g~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 9 DKKIIKILQNDGKAP---LREISKIT-GLAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHCTTCC---HHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---HHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 344556777776544 99999999 79999999999988754
No 149
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=25.40 E-value=1.7e+02 Score=20.39 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=37.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
......+|.++...|+..+...+.-+...-+.||..+ |-|..||.-=|.+
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqN 57 (73)
T 2l7z_A 8 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT-NLSERQVTIWFQN 57 (73)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH-TSCSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 3455679999999999999886654445568889988 6888888765543
No 150
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=23.51 E-value=2e+02 Score=20.39 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
....+|.++...|+.++.....-+...=+.||..+ |-+..+|.-=|++
T Consensus 25 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqN 72 (84)
T 2kt0_A 25 TRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL-NLSYKQVKTWFQN 72 (84)
T ss_dssp CSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 34469999999999999886554444557889998 7899888765553
No 151
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=23.13 E-value=1.7e+02 Score=19.36 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHH---CCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 9 SSVWTKEQDKAFENALVS---YPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 9 ~~~WT~EEdk~Le~Ala~---~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
+..+|.+....|+..+.. .+--+...=+.||..+ |-|..||..=|.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-gl~~~qV~~WFq 50 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVS 50 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-CCCHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 457899999999999988 4444444557889888 789999876554
No 152
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.94 E-value=1.6e+02 Score=19.68 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS 173 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~ 173 (297)
.+|+.|-+.|.. + ..|. ....||+ .+ +-|...|+.|.++.+.++..
T Consensus 11 ~L~~~e~~il~~-~-~~g~-s~~eIA~-~l-~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQDK-TTKEIAS-EL-FISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCHHHHHHHHH-H-TTTC-CHHHHHH-HH-TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHH-H-HcCC-CHHHHHH-HH-CCCHHHHHHHHHHHHHHHCC
Confidence 588888887766 4 5676 8999995 44 56889999887777766643
No 153
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.84 E-value=41 Score=27.61 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.0
Q ss_pred HHHhhhCCCCCHHHHHHHHH
Q 022439 36 EKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 36 ekIA~~VpGRT~~Qcr~rY~ 55 (297)
..||..+.|||++|||+.|.
T Consensus 119 ~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 68999999999999999884
No 154
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.80 E-value=1.1e+02 Score=21.60 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
..|+.|-+.|.. + ..|. .-+.||+ . -+-+...|++|-++-+.++.
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~-s~~eIA~-~-l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGL-PNKMIAR-R-LDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTC-CHHHHHH-H-HTSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH-H-HcCC-CHHHHHH-H-HCcCHHHHHHHHHHHHHHHc
Confidence 588888887776 4 6777 8999995 4 45789999998776666664
No 155
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.75 E-value=1.6e+02 Score=21.42 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhcc
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSM 174 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~~ 174 (297)
..|+.|-+.|.. + ..|. .-+.||+ . -+-|...|++|..+-+.++...
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~-s~~eIA~-~-l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGL-TNKQIAD-R-MFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTC-CHHHHHH-H-HTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHH-H-HcCC-CHHHHHH-H-HCcCHHHHHHHHHHHHHHHcCC
Confidence 588888887776 4 7787 8999995 4 4569999999987777777543
No 156
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.71 E-value=1.2e+02 Score=22.11 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS 173 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~ 173 (297)
.-|+.|-+.|.... .|. .-+.||+ .-+-+...|++|.++.+.++.-
T Consensus 29 ~Lt~rE~~Vl~l~~--~G~-s~~eIA~--~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 29 VLTPRECLILQEVE--KGF-TNQEIAD--ALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp CCCHHHHHHHHHHH--TTC-CHHHHHH--HHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH--cCC-CHHHHHH--HHCcCHHHHHHHHHHHHHHHCC
Confidence 68888888776654 788 8999995 4457999999998888877753
No 157
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=22.63 E-value=41 Score=25.17 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=20.2
Q ss_pred hhHHHHhhhCCC---CC-HHHHHHHHHHhhhh
Q 022439 33 DRWEKIAADVPG---KS-LEEIKQHYELLVDD 60 (297)
Q Consensus 33 ~rWekIA~~VpG---RT-~~Qcr~rY~~l~~d 60 (297)
..|.+||..+.- .+ ..+++++|.+++..
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 479999999862 23 45788889866544
No 158
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=22.14 E-value=34 Score=27.45 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=17.9
Q ss_pred HHHhhhCCCCCHHHHHHHHH
Q 022439 36 EKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 36 ekIA~~VpGRT~~Qcr~rY~ 55 (297)
..||..+.|||++|+|+.|.
T Consensus 115 ~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 115 KTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 68899999999999998884
No 159
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=21.95 E-value=1.8e+02 Score=19.35 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+...+.-+...=+.||..+ |-|..+|.-=|.
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFq 52 (62)
T 2vi6_A 6 MRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL-NLSYKQVKTWFQ 52 (62)
T ss_dssp --CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHhhHHhH
Confidence 45679999999999999886554444557889988 788888865554
No 160
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.45 E-value=1.6e+02 Score=20.05 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172 (297)
Q Consensus 123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~ 172 (297)
..|+.|-+.|.. + ..|. ....||. . -+-+...|++|..+.+.++.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~-s~~eIA~-~-l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGL-PNKSIAY-D-LDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTC-CHHHHHH-H-TTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCC-CHHHHHH-H-HCcCHHHHHHHHHHHHHHHc
Confidence 477777777765 4 5677 8999995 4 46789999988766666654
No 161
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.02 E-value=44 Score=28.31 Aligned_cols=15 Identities=20% Similarity=0.765 Sum_probs=13.0
Q ss_pred CCCCCCCHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFE 21 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le 21 (297)
...+.||.|+|+.|+
T Consensus 112 N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 112 NVPGIWTHDDDESLK 126 (168)
T ss_dssp TCTTCCCHHHHHHHH
T ss_pred CCCCCCChhhHHHHH
Confidence 456889999999998
No 162
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.96 E-value=2.1e+02 Score=19.77 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=35.5
Q ss_pred CCCCCCCHHHHHHHHHHHHH-CCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 7 GSSSVWTKEQDKAFENALVS-YPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 7 ~~~~~WT~EEdk~Le~Ala~-~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
.....+|.++...|+..+.. .+.-+...=+.||..+ |-|..||.-=|.
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~-~l~~~qV~~WFq 52 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA-GLTEEQTQKWFK 52 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 35567999999999999985 4433334457889988 788888875554
No 163
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.90 E-value=1.6e+02 Score=22.99 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439 17 DKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60 (297)
Q Consensus 17 dk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d 60 (297)
|..+..+|+..+.-+ +..||+.+ |-|..-|.++.+.|.+.
T Consensus 10 d~~il~~L~~~~~~s---~~ela~~l-g~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 10 DRGILEALMGNARTA---YAELAKQF-GVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHHHHHHCTTSC---HHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---HHHHHHHH-CcCHHHHHHHHHHHHHc
Confidence 445556777776654 99999999 79999999999988753
No 164
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=20.74 E-value=2.1e+02 Score=19.56 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+...+.-+...=+.||..+ |-|..+|.-=|.
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFq 51 (68)
T 1ahd_P 5 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-SLTERQIKIWFQ 51 (68)
T ss_dssp TTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH-CcCHhhhhHHhH
Confidence 45679999999999999886544444567889988 788888875554
No 165
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=20.72 E-value=2.4e+02 Score=20.26 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~ 56 (297)
....+|.++...|+..+.....-+...=+.||..+ |-|..+|.-=|++
T Consensus 31 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqN 78 (88)
T 2r5y_A 31 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-SLTERQIKIWFQN 78 (88)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CcCHHHhhHHhHH
Confidence 45579999999999999875544444557889988 7888888765543
No 166
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.38 E-value=2.2e+02 Score=19.62 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHH-CCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439 8 SSSVWTKEQDKAFENALVS-YPEDASDRWEKIAADVPGKSLEEIKQHYE 55 (297)
Q Consensus 8 ~~~~WT~EEdk~Le~Ala~-~p~~~~~rWekIA~~VpGRT~~Qcr~rY~ 55 (297)
....+|.++...|+..+.. ...-+...=+.||..+ |-|..||.-=|.
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFq 51 (72)
T 1uhs_A 4 GAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA-GLTEEQTQKWFK 51 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH-CcCHHHhhHHhH
Confidence 4567999999999999985 4433334457889988 789998875554
Done!