Query 022441
Match_columns 297
No_of_seqs 213 out of 535
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 05:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.6 0.03 1E-06 52.0 13.2 107 16-127 174-281 (332)
2 3zux_A Transporter, ASBTNM; tr 27.1 3.4E+02 0.012 24.3 13.0 58 49-107 46-107 (332)
3 2kxa_A Haemagglutinin HA2 chai 15.8 78 0.0027 18.4 1.7 14 260-273 2-15 (30)
4 1q90_G Cytochrome B6F complex 13.5 52 0.0018 20.3 0.5 10 264-273 6-15 (37)
5 2nwl_A GLTPH, glutamate sympor 12.6 4E+02 0.014 24.9 6.7 54 49-102 55-112 (422)
6 1zcd_A Na(+)/H(+) antiporter 1 11.6 61 0.0021 30.4 0.6 93 36-128 248-349 (388)
7 2l34_A TYRO protein tyrosine k 8.3 1.3E+02 0.0045 17.9 1.0 10 262-271 7-16 (33)
8 1vf5_G Protein PET G; photosyn 7.3 63 0.0022 19.9 -0.8 10 264-273 6-15 (37)
9 4b19_A PEPA1; toxin, toxin apo 6.6 2.5E+02 0.0086 16.4 1.6 17 252-268 4-20 (30)
10 3mk7_C Cytochrome C oxidase, C 5.5 6.2E+02 0.021 22.1 4.5 20 70-89 55-74 (311)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.57 E-value=0.03 Score=51.99 Aligned_cols=107 Identities=20% Similarity=0.148 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 022441 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSFLIGSALAWILI 94 (297)
Q Consensus 16 ~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~-~~i~v~~~~~~~i~~~lg~l~~ 94 (297)
.+++=..+|.+++....++ .+...+.+.++.. +.+=..++..++.+ .+.+.+. +.+....++..++++.+||.++
T Consensus 174 ~vllP~~lG~l~r~~~~~~-~~~~~~~l~~~s~-~~illiv~~~~~~~--~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~ 249 (332)
T 3zux_A 174 MVLLPIVLGLIVHKVLGSK-TEKLTDALPLVSV-AAIVLIIGAVVGAS--KGKIMESGLLIFAVVVLHNGIGYLLGFFAA 249 (332)
T ss_dssp HTHHHHHHHHHHHHHHGGG-GHHHHTTHHHHHH-HHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHH-HHHHHHhHHHHHhh--hHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888777422222 1223333333221 11112222223332 3344332 2333344666789999999999
Q ss_pred HHhcCCCcccceeeeecccCCcchhHHHHHHhh
Q 022441 95 KITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (297)
Q Consensus 95 ~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al 127 (297)
|.+|.+++.+..+...|+..|+ .+++++..+.
T Consensus 250 r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~ 281 (332)
T 3zux_A 250 KWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH 281 (332)
T ss_dssp HHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH
Confidence 9999998888776666888888 4777776654
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=27.15 E-value=3.4e+02 Score=24.29 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHhhHHHHHHhhccCCcchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccee
Q 022441 49 YVFNPALIGSNLAETITYQSLI----SLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLV 107 (297)
Q Consensus 49 ~vflP~Lif~~l~~~~t~~~l~----~~~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~~rg~~ 107 (297)
...+..++| ..+-+++.+++. ++....+..++.+++.-+++|.+++.+..++.....+
T Consensus 46 ~~~l~~~mf-~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Gl 107 (332)
T 3zux_A 46 PWLLGIIMF-GMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGV 107 (332)
T ss_dssp HHHHHHHHH-HHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHH-HHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 355655554 455566888887 3444555566777888889999999888776655333
No 3
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=15.80 E-value=78 Score=18.41 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhccc
Q 022441 260 TIAAIIGFVIGTIS 273 (297)
Q Consensus 260 ~iaai~g~ivG~vP 273 (297)
+.|||.|||-|--+
T Consensus 2 lFGAIAGfieggW~ 15 (30)
T 2kxa_A 2 LFGAIAGFIEGGWT 15 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcCcc
Confidence 57899999977443
No 4
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=13.53 E-value=52 Score=20.25 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=6.6
Q ss_pred HHHHHhhccc
Q 022441 264 IIGFVIGTIS 273 (297)
Q Consensus 264 i~g~ivG~vP 273 (297)
+.|++.|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1q90_G 6 LCGIVLGLVP 15 (37)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4567777776
No 5
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=12.62 E-value=4e+02 Score=24.92 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=38.5
Q ss_pred HHHhhHHHHHHhhccCC-c--chhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 022441 49 YVFNPALIGSNLAETIT-Y--QSLISL-WFMPVNILLSFLIGSALAWILIKITRTPPH 102 (297)
Q Consensus 49 ~vflP~Lif~~l~~~~t-~--~~l~~~-~~i~v~~~~~~~i~~~lg~l~~~i~~~p~~ 102 (297)
+...|.|+|.++...+. . +++.++ +....+..++++++.++|.++..++++-..
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45667788888877763 3 344443 456666788889999999999999886543
No 6
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=11.56 E-value=61 Score=30.38 Aligned_cols=93 Identities=16% Similarity=0.302 Sum_probs=53.3
Q ss_pred ChhHHhhhhHHHHHHHhhHHHHHHhhccCCcc---hhhhhhHH--HHHHHHHHHHH-HHHHHHHHHHh--cCCCccc-ce
Q 022441 36 GHSVTHSLNNLVFYVFNPALIGSNLAETITYQ---SLISLWFM--PVNILLSFLIG-SALAWILIKIT--RTPPHLQ-GL 106 (297)
Q Consensus 36 ~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~---~l~~~~~i--~v~~~~~~~i~-~~lg~l~~~i~--~~p~~~r-g~ 106 (297)
.++-.+.+..++..+++|..-|.|.+-+++.. .+.+...+ .+..++.-.+| +..+|+..|.. +.|+..+ +-
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 45667889999999999999999999888763 33231111 11112222233 22245554433 5665543 33
Q ss_pred eeeecccCCcchhHHHHHHhhh
Q 022441 107 VIGCCSAGNMGNLLLIIVPAVC 128 (297)
Q Consensus 107 ~i~~~~f~Nt~~Lpl~l~~al~ 128 (297)
....+...|+++.-=.++..+.
T Consensus 328 ~~~vg~L~gigftmsL~Ia~la 349 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLA 349 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHh
Confidence 4555666888874444444543
No 7
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=8.27 E-value=1.3e+02 Score=17.89 Aligned_cols=10 Identities=30% Similarity=0.777 Sum_probs=4.9
Q ss_pred HHHHHHHhhc
Q 022441 262 AAIIGFVIGT 271 (297)
Q Consensus 262 aai~g~ivG~ 271 (297)
|++.|+++|-
T Consensus 7 gaIaGIVvgd 16 (33)
T 2l34_A 7 GVLAGIVVGD 16 (33)
T ss_dssp HHHHHHHHHH
T ss_pred ceEEeEeHHH
Confidence 3445555543
No 8
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=7.25 E-value=63 Score=19.88 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=4.9
Q ss_pred HHHHHhhccc
Q 022441 264 IIGFVIGTIS 273 (297)
Q Consensus 264 i~g~ivG~vP 273 (297)
+.|++.|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1vf5_G 6 LDGLVLGLVF 15 (37)
T ss_dssp ---CHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4566677766
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=6.59 E-value=2.5e+02 Score=16.42 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.5
Q ss_pred hhhccChhHHHHHHHHH
Q 022441 252 LKMIFAPSTIAAIIGFV 268 (297)
Q Consensus 252 l~~~~~Pp~iaai~g~i 268 (297)
+-++++|.+.|+++++.
T Consensus 4 fv~iia~visGcivalF 20 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFF 20 (30)
T ss_dssp GTSSTTTTHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHH
Confidence 45678899999998875
No 10
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=5.47 E-value=6.2e+02 Score=22.11 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 022441 70 ISLWFMPVNILLSFLIGSAL 89 (297)
Q Consensus 70 ~~~~~i~v~~~~~~~i~~~l 89 (297)
-.||+..++..+.+.++|++
T Consensus 55 p~ww~~~f~~~iv~~~~y~~ 74 (311)
T 3mk7_C 55 PRWWFLLFIGTLVFGILYLV 74 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 34777777776766666655
Done!