BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022442
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 105 LIDLYKKCGKVEEQIEMLKRKLRL-------IYQ-GEAF--NGKPTKTARSHGKKFQVSV 154
L + Y K G +E IE ++ L L Y G A+ G + + K ++
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARS 213
R ++ NL AY ++ ++ A YQKA +DP + +A NLG K+ Y+EA
Sbjct: 67 R--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 214 VLEDVL 219
+ L
Sbjct: 125 YYQKAL 130
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 219
NL AY ++ ++ A YQKA +DP + +A NLG K+ Y+EA + L
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN 164
L + Y K G +E IE ++ L L P E LGN
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALEL---------DPNNA--------------EAWYNLGN 51
Query: 165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 219
AY ++ ++ A YQKA +DP+ +A NLG K+ Y+EA + L
Sbjct: 52 ---AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 219
NL AY ++ ++ A YQKA +DP+ +A NLG K+ Y+EA + L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 219
NL AY ++ ++ A YQKA +DP + +A NLG K+ Y+EA + L
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 157 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGLCLIKRTRYNEARSVL 215
E + LGN AY ++ ++ A YQKA +DP +A+ NLG K+ Y +A
Sbjct: 10 EAWKNLGN---AYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 216 EDVL 219
+ L
Sbjct: 67 QKAL 70
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFR 90
Y+ + QKD E F + IN+ VD V + D+ EA EAI SF
Sbjct: 92 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN 151
Query: 91 GLCSKQSQESL 101
G S E +
Sbjct: 152 GHKPPGSSEPI 162
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFR 90
Y+ + QKD E F + IN+ VD V + D+ EA EAI SF
Sbjct: 92 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN 151
Query: 91 GLCSKQSQESL 101
G S E +
Sbjct: 152 GHKPPGSSEPI 162
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEA 211
NL AY ++ ++ A YQKA +DP+ +A NLG K+ Y+EA
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
>pdb|2ZGT|A Chain A, Crystal Structure Of Agrocybe Aegerita Lectin Aal Mutant
F93g
pdb|2ZGT|B Chain B, Crystal Structure Of Agrocybe Aegerita Lectin Aal Mutant
F93g
Length = 167
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 131 QGEAFNGKPTKTARSHGKKFQVSVRQET--------SRLLGNLAWAYMQKTNFMAAEV 180
QG +GK T HG K+QV + ++T S L +L++ ++T+ + V
Sbjct: 93 QGAGIDGKAMVTVFDHGDKYQVVINEKTVIQYTKQISGLTSSLSYNATEETSIFSTVV 150
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID 107
A VL IN G R+ S D +V A++ +K GL K+++E+LD+V I
Sbjct: 292 AKVLAEALINEGFRIVSGGTDNHLV---------AVD-VKGSIGLTGKEAEETLDSVGIT 341
Query: 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK 149
K +++ + +RL G P T R +K
Sbjct: 342 CNKNTIPFDQEKPFVTSGIRL--------GTPAATTRGFDEK 375
>pdb|1T8P|A Chain A, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|1T8P|B Chain B, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|2A9J|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2A9J|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2F90|A Chain A, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2F90|B Chain B, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2H4X|A Chain A, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4X|B Chain B, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4Z|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H4Z|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H52|A Chain A, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|2H52|B Chain B, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|3NFY|A Chain A, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
pdb|3NFY|B Chain B, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
Length = 267
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 254 LLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRI 295
L+GLN E +N EE VR+W S + P EE + I
Sbjct: 95 LIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEI 136
>pdb|2HHJ|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
pdb|2HHJ|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
Length = 267
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 254 LLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRI 295
L+GLN E +N EE VR+W S + P EE + I
Sbjct: 95 LIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEI 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,117,748
Number of Sequences: 62578
Number of extensions: 309691
Number of successful extensions: 795
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 33
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)