BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022442
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O67066|FTSY_AQUAE Signal recognition particle receptor FtsY OS=Aquifex aeolicus
(strain VF5) GN=ftsY PE=3 SV=1
Length = 461
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 9 KIFSSKKEDLFHVIHKVPAGDGPYVRA-----KHAQLVQKDPEAAIVL-----FWKAINA 58
K ++S++EDL ++ ++ +G V+A K+ + K E A V + KAI
Sbjct: 39 KKYASQREDLAELLFELYVQEGKLVQAYPLLKKYGDKIGKAKERAKVYQAVGEYQKAIEE 98
Query: 59 GDRVD--SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 116
+V +L ++A + QL++ ++A+E + L + +E L+N + L K+ G +E
Sbjct: 99 FLKVGDFESLYNVAKIYHQLEKPDKALEYAQRAEKLVPYEKKEELENFITQLKKELGLIE 158
Query: 117 EQIEMLKRKLR 127
E+ E + KLR
Sbjct: 159 EKKESILDKLR 169
>sp|Q3BY61|CH60_XANC5 60 kDa chaperonin OS=Xanthomonas campestris pv. vesicatoria (strain
85-10) GN=groL PE=3 SV=1
Length = 546
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 3 MGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV 62
MG+ K +SK D AGDG AQ + ++ A+ ++ +
Sbjct: 69 MGAQMVKEVASKTND--------NAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI 120
Query: 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
D A+K V +K + + +AI G S S ES+ N++ + KK GK
Sbjct: 121 DQAVKAAVVELKNISKPTTDDKAIAQV-GTISANSDESIGNIIAEAMKKVGK 171
>sp|Q5GUT1|CH60_XANOR 60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=groL PE=3 SV=1
Length = 546
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 3 MGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV 62
MG+ K +SK D AGDG AQ + ++ A+ ++ +
Sbjct: 69 MGAQMVKEVASKTND--------NAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI 120
Query: 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
D A+K V +K + + +AI G S S ES+ N++ + KK GK
Sbjct: 121 DQAVKAAVVELKNISKPTTDDKAIAQV-GTISANSDESIGNIIAEAMKKVGK 171
>sp|B2SJG4|CH60_XANOP 60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain PXO99A)
GN=groL PE=3 SV=1
Length = 546
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 3 MGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV 62
MG+ K +SK D AGDG AQ + ++ A+ ++ +
Sbjct: 69 MGAQMVKEVASKTND--------NAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI 120
Query: 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
D A+K V +K + + +AI G S S ES+ N++ + KK GK
Sbjct: 121 DQAVKAAVVELKNISKPTTDDKAIAQV-GTISANSDESIGNIIAEAMKKVGK 171
>sp|Q2NY29|CH60_XANOM 60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain MAFF
311018) GN=groL PE=3 SV=1
Length = 546
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 3 MGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV 62
MG+ K +SK D AGDG AQ + ++ A+ ++ +
Sbjct: 69 MGAQMVKEVASKTND--------NAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI 120
Query: 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
D A+K V +K + + +AI G S S ES+ N++ + KK GK
Sbjct: 121 DQAVKAAVVELKNISKPTTDDKAIAQV-GTISANSDESIGNIIAEAMKKVGK 171
>sp|Q8PPZ1|CH60_XANAC 60 kDa chaperonin OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=groL PE=3 SV=1
Length = 546
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 3 MGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV 62
MG+ K +SK D AGDG AQ + ++ A+ ++ +
Sbjct: 69 MGAQMVKEVASKTND--------NAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI 120
Query: 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
D A+K V +K + + +AI G S S ES+ N++ + KK GK
Sbjct: 121 DQAVKAAVVELKNISKPTTDDKAIAQV-GTISANSDESIGNIIAEAMKKVGK 171
>sp|Q9SUF9|PP305_ARATH Pentatricopeptide repeat-containing protein At4g08210
OS=Arabidopsis thaliana GN=PCMP-E100 PE=3 SV=1
Length = 686
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 87 KSFRGLCSKQSQES---LDNVLIDLYKKCGKVEEQI----EMLKRKL---RLIYQGEAFN 136
K GLC K+ ES L+D+Y KCG+++ + ML+R + I G N
Sbjct: 463 KQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQN 522
Query: 137 GKPTKTARSHGKKFQVSVRQETSRLLGNLA 166
G+ + R K + + LG L+
Sbjct: 523 GRVEEAFRYFHKMINIGIEPNKVTFLGLLS 552
>sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa
subsp. japonica GN=SPY PE=3 SV=1
Length = 927
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 46 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105
E AIV + A++ R A ++ V+ K D ++A+E + + SQ SL+N+
Sbjct: 303 EMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLG 361
Query: 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL 165
+ +Y GK++ M+++ + F S E LG L
Sbjct: 362 V-VYTVQGKMDAASSMIQKAI-----------------------FANSTYAEAYNNLGVL 397
Query: 166 AWAYMQKTNFMAAEVVYQKAQMIDPDANKA 195
Y + +A Y+K IDPD+ A
Sbjct: 398 ---YRDAGSITSAVQAYEKCLQIDPDSRNA 424
>sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protein At3g13880
OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1
Length = 748
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 98 QESLDNVLIDLYKKCGKVEEQIEMLKR 124
Q L NVLID+Y KCGK+++ + + R
Sbjct: 182 QVFLINVLIDMYSKCGKLDQAMSLFDR 208
>sp|A6T4W3|MTNN_KLEP7 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=mtnN PE=1 SV=1
Length = 232
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 172
G +EE++ +L+ K+ Q G T + HG V V S + G +A A
Sbjct: 7 GAMEEEVTLLRDKIEN-RQTITIGGSEIYTGQLHG----VDVALLKSGI-GKVAAA---- 56
Query: 173 TNFMAAEVVYQKAQMIDPDA--NKACNLGLC---------LIKRTRYNEARSVLEDVLYG 221
M A ++ ++ Q PD N GL + RY++A YG
Sbjct: 57 ---MGATLLLERCQ---PDVIINTGSAGGLASTLKVGDIVVSDEARYHDADVTAFGYEYG 110
Query: 222 RIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLE-DEFVNG 266
++PGC G K E+L+ ES DL+ + GL + D F+NG
Sbjct: 111 QLPGCPAG--FKADEKLVAAAESCIKALDLNAVRGLIVSGDAFING 154
>sp|Q6FNU6|PPID_CANGA Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CPR6 PE=3 SV=1
Length = 371
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
GD + +LKD A V L + E I+AI++ + + +KQ +E V + YKKC K
Sbjct: 194 GDNYEESLKDDAKV--DLKKVETVIKAIETVKDIGTKQFKEQNYEVALAKYKKCDK 247
>sp|Q8RIT7|CH60_XANCH 60 kDa chaperonin OS=Xanthomonas campestris pv. phaseoli GN=groL
PE=3 SV=1
Length = 546
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 3 MGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV 62
MG+ K +SK D AGDG AQ + ++ A+ ++ +
Sbjct: 69 MGAQMVKEVASKTND--------NAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI 120
Query: 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
D A+K V +K + + +AI G S S ES+ N++ + +K GK
Sbjct: 121 DQAVKAAVVELKNISKPTTDDKAIAQV-GTISANSDESIGNIIAEAMQKVGK 171
>sp|Q8PD23|CH60_XANCP 60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain
ATCC 33913 / NCPPB 528 / LMG 568) GN=groL PE=3 SV=1
Length = 546
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 3 MGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV 62
MG+ K +SK D AGDG AQ + ++ A+ ++ +
Sbjct: 69 MGAQMVKEVASKTND--------NAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI 120
Query: 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
D A+K + +K + + +AI G S S ES+ N++ + +K GK
Sbjct: 121 DQAVKAAVIELKNISKPTTDDKAIAQV-GTISANSDESIGNIIAEAMQKVGK 171
>sp|Q4UZA7|CH60_XANC8 60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain
8004) GN=groL PE=3 SV=1
Length = 546
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 3 MGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV 62
MG+ K +SK D AGDG AQ + ++ A+ ++ +
Sbjct: 69 MGAQMVKEVASKTND--------NAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGI 120
Query: 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114
D A+K + +K + + +AI G S S ES+ N++ + +K GK
Sbjct: 121 DQAVKAAVIELKNISKPTTDDKAIAQV-GTISANSDESIGNIIAEAMQKVGK 171
>sp|Q5WZ02|PDXH_LEGPL Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila (strain Lens) GN=pdxH PE=3 SV=1
Length = 215
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG 91
Y AK Q +QK+P AA+ +W + RV +K ++ S I++ F
Sbjct: 82 YQSAKAMQ-IQKNPYAALNFYWPQMARQVRVRGRVKKISSEQSDAYFSSRPIKS--QFSA 138
Query: 92 LCSKQSQESLDNVLID 107
+ S QSQE LD + ++
Sbjct: 139 IVSPQSQEILDRISLE 154
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFR 90
Y+ + QKD E + F + IN+ VD A V + D+ EA EAI SF
Sbjct: 109 YISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFN 168
Query: 91 GLCSKQSQESL 101
G S E +
Sbjct: 169 GHKPPGSSEPI 179
>sp|Q62448|IF4G2_MOUSE Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus
GN=Eif4g2 PE=1 SV=2
Length = 906
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 26/121 (21%)
Query: 31 PYVRAKHAQLVQKDP----------EAAIVLFWKAINAGDRVDSALKDM----------- 69
P ++ K A+ +K P EA + + + NA D V S +++M
Sbjct: 523 PLIQEKPAKTSKKPPPSKEELLKLTEAVVTDYLNSGNANDAV-SGVREMRAPKHFLPEML 581
Query: 70 -AVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL---IDLYKKCGKVEEQIEMLKRK 125
V++ LDRS+E E S L ++ + DN + +++ ++C K+E I ++K
Sbjct: 582 SKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLEQCPKLEVDIPLVKSY 641
Query: 126 L 126
L
Sbjct: 642 L 642
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 101 LDNVLIDLYKKCGKVEEQIEMLK 123
L VLID+Y KCG++EE +E+ K
Sbjct: 284 LGCVLIDMYAKCGEMEEALEVFK 306
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 21/96 (21%)
Query: 50 VLFWKAINAGDRVDSALKDMAVVMKQLDRSE------------------EAIEAIKSFRG 91
V+ W A+ +G ++ LK + ++ R A+E G
Sbjct: 72 VVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 131
Query: 92 LCSKQSQESL---DNVLIDLYKKCGKVEEQIEMLKR 124
C K E + N L+D+Y KCG++ E ++ +R
Sbjct: 132 FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRR 167
>sp|B0RN52|CH60_XANCB 60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain
B100) GN=groL PE=3 SV=1
Length = 546
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI 86
AGDG AQ + ++ A+ ++ +D A+K + +K + + +AI
Sbjct: 85 AGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAI 144
Query: 87 KSFRGLCSKQSQESLDNVLIDLYKKCGK 114
G S S ES+ N++ + +K GK
Sbjct: 145 AQV-GTISANSDESIGNIIAEAMQKVGK 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,958,937
Number of Sequences: 539616
Number of extensions: 4341446
Number of successful extensions: 13068
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 13039
Number of HSP's gapped (non-prelim): 72
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)