Query 022442
Match_columns 297
No_of_seqs 263 out of 1469
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 4.5E-24 9.9E-29 200.8 16.4 231 26-259 249-500 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 1.9E-23 4.2E-28 196.6 16.9 199 26-226 283-490 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-19 3.3E-24 179.5 26.5 214 30-271 332-569 (615)
4 PRK09782 bacteriophage N4 rece 99.8 1.7E-18 3.7E-23 177.9 25.9 199 20-223 501-708 (987)
5 PRK15174 Vi polysaccharide exp 99.8 2.8E-18 6.2E-23 171.3 26.4 261 13-275 59-383 (656)
6 TIGR02521 type_IV_pilW type IV 99.8 1.2E-17 2.6E-22 142.8 24.0 167 29-221 31-198 (234)
7 PRK12370 invasion protein regu 99.8 4.9E-18 1.1E-22 166.6 24.1 180 14-221 279-470 (553)
8 TIGR00990 3a0801s09 mitochondr 99.8 1E-17 2.2E-22 166.4 25.9 81 9-89 140-220 (615)
9 COG3063 PilF Tfp pilus assembl 99.8 4E-17 8.7E-22 138.5 23.2 164 32-221 38-202 (250)
10 PRK15174 Vi polysaccharide exp 99.8 4.1E-17 9E-22 162.9 26.0 201 38-242 186-400 (656)
11 PRK11189 lipoprotein NlpI; Pro 99.8 5.5E-17 1.2E-21 147.3 23.1 200 19-222 50-266 (296)
12 PRK09782 bacteriophage N4 rece 99.8 8.4E-17 1.8E-21 165.6 26.5 250 20-275 466-739 (987)
13 PRK12370 invasion protein regu 99.8 1.9E-17 4.1E-22 162.5 20.7 178 43-248 275-473 (553)
14 PRK11447 cellulose synthase su 99.8 1.5E-16 3.2E-21 168.2 27.3 235 9-245 364-700 (1157)
15 KOG1126 DNA-binding cell divis 99.8 8.5E-18 1.8E-22 160.1 15.5 168 26-221 418-586 (638)
16 TIGR02917 PEP_TPR_lipo putativ 99.8 2.3E-16 5E-21 160.0 26.5 194 26-221 598-832 (899)
17 TIGR02917 PEP_TPR_lipo putativ 99.8 3.7E-16 8.1E-21 158.5 27.2 198 23-222 459-665 (899)
18 PRK11788 tetratricopeptide rep 99.8 4.1E-16 8.9E-21 145.8 25.1 94 36-129 42-137 (389)
19 PRK15359 type III secretion sy 99.8 3.5E-17 7.7E-22 133.0 15.0 127 48-205 12-139 (144)
20 TIGR02521 type_IV_pilW type IV 99.7 4.2E-16 9E-21 133.2 22.1 181 15-221 50-232 (234)
21 KOG1126 DNA-binding cell divis 99.7 2.1E-17 4.5E-22 157.5 15.3 170 62-259 420-601 (638)
22 PRK11447 cellulose synthase su 99.7 3.8E-16 8.2E-21 165.2 25.9 186 36-221 276-524 (1157)
23 PRK11788 tetratricopeptide rep 99.7 8E-16 1.7E-20 143.9 24.7 234 12-247 51-313 (389)
24 KOG1155 Anaphase-promoting com 99.7 5.3E-16 1.2E-20 142.6 19.9 156 38-221 339-495 (559)
25 PRK11189 lipoprotein NlpI; Pro 99.7 4.1E-16 9E-21 141.5 19.0 189 14-206 82-285 (296)
26 KOG1125 TPR repeat-containing 99.7 4.1E-16 8.9E-21 146.7 15.7 204 15-221 272-527 (579)
27 KOG1125 TPR repeat-containing 99.7 8E-15 1.7E-19 138.1 24.2 155 67-223 289-495 (579)
28 PRK15359 type III secretion sy 99.7 1.9E-15 4.1E-20 122.8 15.7 128 83-241 13-141 (144)
29 PF13429 TPR_15: Tetratricopep 99.7 6.3E-16 1.4E-20 138.9 13.9 206 14-221 62-277 (280)
30 PRK10049 pgaA outer membrane p 99.7 1.1E-14 2.4E-19 148.0 24.1 182 40-221 248-456 (765)
31 TIGR03302 OM_YfiO outer membra 99.7 1.1E-14 2.3E-19 127.4 20.8 185 28-221 32-232 (235)
32 PRK15179 Vi polysaccharide bio 99.7 1.2E-14 2.7E-19 144.6 22.2 147 47-221 70-217 (694)
33 KOG1155 Anaphase-promoting com 99.7 1.6E-14 3.4E-19 133.0 20.7 157 37-221 270-461 (559)
34 KOG1840 Kinesin light chain [C 99.7 1.8E-14 3.9E-19 137.8 21.5 173 31-221 201-396 (508)
35 KOG1173 Anaphase-promoting com 99.7 1.8E-14 3.9E-19 135.4 20.7 199 21-221 304-518 (611)
36 PRK10370 formate-dependent nit 99.7 3.5E-14 7.6E-19 121.5 21.0 152 36-226 23-178 (198)
37 PRK10370 formate-dependent nit 99.6 8.5E-15 1.8E-19 125.3 16.4 125 42-194 52-179 (198)
38 TIGR00540 hemY_coli hemY prote 99.6 5.4E-14 1.2E-18 133.3 21.1 207 15-221 137-399 (409)
39 COG3063 PilF Tfp pilus assembl 99.6 5.2E-14 1.1E-18 119.7 17.6 134 63-225 35-172 (250)
40 PF13429 TPR_15: Tetratricopep 99.6 8.7E-15 1.9E-19 131.5 13.6 226 16-269 25-270 (280)
41 PRK10747 putative protoheme IX 99.6 1.8E-13 3.8E-18 129.3 21.7 209 13-221 135-390 (398)
42 KOG0547 Translocase of outer m 99.6 8.5E-14 1.8E-18 129.0 18.0 206 14-221 344-566 (606)
43 PRK15179 Vi polysaccharide bio 99.6 9.6E-14 2.1E-18 138.3 19.8 149 18-194 75-223 (694)
44 COG5010 TadD Flp pilus assembl 99.6 1.6E-13 3.4E-18 118.7 18.1 171 20-219 58-229 (257)
45 PRK10049 pgaA outer membrane p 99.6 2.6E-13 5.6E-18 138.1 21.9 164 28-220 14-178 (765)
46 TIGR02552 LcrH_SycD type III s 99.6 2.5E-13 5.3E-18 108.4 15.5 117 50-194 4-120 (135)
47 PRK14574 hmsH outer membrane p 99.5 7.3E-13 1.6E-17 134.3 22.2 168 26-221 31-198 (822)
48 PLN02789 farnesyltranstransfer 99.5 1.4E-12 3.1E-17 119.2 22.0 156 39-222 47-213 (320)
49 TIGR03302 OM_YfiO outer membra 99.5 1.1E-12 2.3E-17 114.7 20.2 141 58-221 28-195 (235)
50 PRK15363 pathogenicity island 99.5 3.6E-13 7.9E-18 109.3 15.4 117 101-243 37-154 (157)
51 PLN02789 farnesyltranstransfer 99.5 2.3E-12 5E-17 117.9 21.4 195 14-243 55-265 (320)
52 TIGR02552 LcrH_SycD type III s 99.5 8.9E-13 1.9E-17 105.1 15.2 110 84-221 4-114 (135)
53 KOG1174 Anaphase-promoting com 99.5 6E-12 1.3E-16 114.9 22.0 213 30-251 301-523 (564)
54 KOG0547 Translocase of outer m 99.5 1.8E-12 3.9E-17 120.3 18.0 184 36-221 333-532 (606)
55 COG5010 TadD Flp pilus assembl 99.5 8E-12 1.7E-16 108.2 19.7 150 43-221 47-197 (257)
56 cd05804 StaR_like StaR_like; a 99.5 5.1E-12 1.1E-16 116.8 19.1 157 36-221 50-215 (355)
57 KOG1173 Anaphase-promoting com 99.5 3E-12 6.5E-17 120.6 16.5 162 14-201 364-532 (611)
58 KOG0553 TPR repeat-containing 99.4 1.8E-12 3.8E-17 114.3 13.5 129 63-219 81-213 (304)
59 cd05804 StaR_like StaR_like; a 99.4 2.9E-11 6.2E-16 111.8 20.7 171 27-222 4-178 (355)
60 KOG1840 Kinesin light chain [C 99.4 1.2E-11 2.5E-16 118.7 18.1 173 31-221 285-479 (508)
61 KOG2003 TPR repeat-containing 99.4 1.6E-11 3.5E-16 113.2 16.3 181 39-221 500-689 (840)
62 KOG2002 TPR-containing nuclear 99.4 9.5E-12 2.1E-16 123.2 15.1 176 17-220 517-708 (1018)
63 PRK15363 pathogenicity island 99.4 2.4E-11 5.3E-16 98.7 14.2 109 57-193 28-137 (157)
64 TIGR00540 hemY_coli hemY prote 99.4 4.2E-10 9.1E-15 106.7 24.7 244 26-271 115-397 (409)
65 PRK14574 hmsH outer membrane p 99.4 2.3E-10 4.9E-15 116.3 23.9 181 8-217 46-228 (822)
66 KOG0624 dsRNA-activated protei 99.3 2.2E-10 4.8E-15 102.7 19.9 192 32-228 41-256 (504)
67 PRK10747 putative protoheme IX 99.3 7.5E-10 1.6E-14 104.6 24.8 199 36-250 125-362 (398)
68 KOG0548 Molecular co-chaperone 99.3 3.8E-10 8.3E-15 106.1 21.7 190 29-221 224-421 (539)
69 KOG2002 TPR-containing nuclear 99.3 8.2E-11 1.8E-15 116.7 17.4 201 20-222 295-526 (1018)
70 KOG1129 TPR repeat-containing 99.3 4.4E-11 9.5E-16 106.5 13.6 218 34-256 228-470 (478)
71 COG2956 Predicted N-acetylgluc 99.3 1.4E-09 3E-14 96.9 23.0 205 14-221 53-278 (389)
72 KOG2076 RNA polymerase III tra 99.3 7.8E-10 1.7E-14 109.2 23.4 209 12-222 155-479 (895)
73 PLN03088 SGT1, suppressor of 99.3 7E-11 1.5E-15 110.0 15.4 112 66-205 5-117 (356)
74 KOG0553 TPR repeat-containing 99.3 4.6E-11 1E-15 105.4 13.2 111 38-176 90-200 (304)
75 CHL00033 ycf3 photosystem I as 99.3 1.2E-10 2.6E-15 96.8 15.2 126 42-193 12-154 (168)
76 KOG2076 RNA polymerase III tra 99.3 7.1E-10 1.5E-14 109.5 20.9 155 39-221 149-309 (895)
77 KOG1129 TPR repeat-containing 99.3 3.7E-11 8.1E-16 107.0 10.9 198 21-221 249-458 (478)
78 COG4783 Putative Zn-dependent 99.3 1.5E-09 3.3E-14 101.2 21.5 134 60-221 303-437 (484)
79 PRK02603 photosystem I assembl 99.3 2.6E-10 5.6E-15 95.3 14.9 106 61-192 33-153 (172)
80 KOG0548 Molecular co-chaperone 99.2 5.3E-10 1.1E-14 105.1 18.0 153 33-221 302-455 (539)
81 COG4783 Putative Zn-dependent 99.2 1.8E-09 3.8E-14 100.8 21.2 157 39-242 316-472 (484)
82 KOG4162 Predicted calmodulin-b 99.2 1.6E-09 3.4E-14 105.6 21.1 195 25-221 474-783 (799)
83 TIGR02795 tol_pal_ybgF tol-pal 99.2 2.8E-10 6.1E-15 87.9 13.3 108 64-194 3-111 (119)
84 PRK02603 photosystem I assembl 99.2 7.3E-10 1.6E-14 92.5 16.6 111 88-221 24-149 (172)
85 PF13414 TPR_11: TPR repeat; P 99.2 5E-11 1.1E-15 83.9 8.1 64 158-221 2-67 (69)
86 PLN03088 SGT1, suppressor of 99.2 3.9E-10 8.4E-15 105.0 15.9 96 33-130 6-101 (356)
87 CHL00033 ycf3 photosystem I as 99.2 3.9E-10 8.6E-15 93.7 14.3 118 79-219 15-140 (168)
88 PRK14720 transcript cleavage f 99.2 1.2E-09 2.5E-14 110.7 20.3 150 58-221 26-178 (906)
89 KOG0550 Molecular chaperone (D 99.2 2.8E-10 6E-15 104.1 14.2 180 38-240 178-368 (486)
90 PLN03218 maturation of RBCL 1; 99.2 6E-09 1.3E-13 108.7 25.7 233 10-245 521-783 (1060)
91 PRK10153 DNA-binding transcrip 99.2 6.4E-10 1.4E-14 108.0 17.4 122 44-194 357-488 (517)
92 COG2956 Predicted N-acetylgluc 99.2 4.7E-09 1E-13 93.5 20.8 190 30-221 37-243 (389)
93 KOG3060 Uncharacterized conser 99.2 3.5E-09 7.7E-14 91.5 19.4 160 35-222 58-221 (289)
94 KOG2003 TPR repeat-containing 99.2 1.1E-09 2.4E-14 101.3 16.4 212 8-221 431-655 (840)
95 PF14938 SNAP: Soluble NSF att 99.2 6E-09 1.3E-13 94.0 20.8 195 31-247 37-250 (282)
96 PRK14720 transcript cleavage f 99.2 6E-10 1.3E-14 112.7 15.0 163 31-221 33-198 (906)
97 PF09976 TPR_21: Tetratricopep 99.1 3.2E-09 7E-14 86.1 16.2 124 36-186 18-145 (145)
98 PRK10866 outer membrane biogen 99.1 1.7E-08 3.8E-13 89.0 21.1 180 31-219 34-239 (243)
99 cd00189 TPR Tetratricopeptide 99.1 1E-09 2.2E-14 79.1 11.2 97 66-190 3-99 (100)
100 PLN03081 pentatricopeptide (PP 99.1 6.5E-09 1.4E-13 105.0 20.5 183 30-220 260-454 (697)
101 PF13432 TPR_16: Tetratricopep 99.1 4.7E-10 1E-14 78.1 8.3 63 105-193 3-65 (65)
102 KOG1156 N-terminal acetyltrans 99.1 5.6E-09 1.2E-13 100.2 17.9 184 31-216 9-209 (700)
103 PLN03081 pentatricopeptide (PP 99.1 5.2E-09 1.1E-13 105.7 18.9 201 13-221 342-557 (697)
104 PF09976 TPR_21: Tetratricopep 99.1 8.4E-09 1.8E-13 83.7 16.5 121 75-219 23-145 (145)
105 PF13525 YfiO: Outer membrane 99.1 1.2E-08 2.6E-13 87.6 18.4 175 29-212 5-198 (203)
106 PLN03218 maturation of RBCL 1; 99.1 3.8E-08 8.3E-13 102.8 25.3 95 32-127 440-535 (1060)
107 KOG1127 TPR repeat-containing 99.1 3.1E-09 6.7E-14 105.9 15.8 215 5-221 429-659 (1238)
108 PF12895 Apc3: Anaphase-promot 99.1 6.5E-10 1.4E-14 81.6 8.4 83 111-218 1-84 (84)
109 COG3071 HemY Uncharacterized e 99.1 3.7E-08 8E-13 90.0 21.0 202 19-221 141-390 (400)
110 COG4235 Cytochrome c biogenesi 99.1 1.4E-08 3.1E-13 90.0 17.7 121 79-227 138-262 (287)
111 KOG0495 HAT repeat protein [RN 99.1 2.6E-08 5.5E-13 95.9 20.2 154 39-221 594-748 (913)
112 TIGR02795 tol_pal_ybgF tol-pal 99.0 5.4E-09 1.2E-13 80.7 12.8 102 30-131 3-108 (119)
113 KOG0624 dsRNA-activated protei 99.0 2E-08 4.4E-13 90.3 17.8 231 8-240 118-389 (504)
114 PLN03077 Protein ECB2; Provisi 99.0 2.1E-08 4.5E-13 103.6 20.0 200 13-221 506-720 (857)
115 COG4235 Cytochrome c biogenesi 99.0 1.3E-08 2.8E-13 90.4 15.8 125 43-195 136-263 (287)
116 cd00189 TPR Tetratricopeptide 99.0 5.1E-09 1.1E-13 75.4 11.1 98 31-130 2-99 (100)
117 PF04733 Coatomer_E: Coatomer 99.0 4E-09 8.6E-14 95.4 12.7 66 156-221 198-265 (290)
118 KOG1127 TPR repeat-containing 99.0 5.1E-09 1.1E-13 104.4 14.2 202 15-221 474-693 (1238)
119 PF12895 Apc3: Anaphase-promot 99.0 1.7E-09 3.6E-14 79.4 8.3 81 42-125 2-84 (84)
120 PF13432 TPR_16: Tetratricopep 99.0 1E-09 2.2E-14 76.3 6.8 58 164-221 2-60 (65)
121 PRK10803 tol-pal system protei 99.0 9.7E-09 2.1E-13 91.5 14.7 62 160-221 181-246 (263)
122 PF13525 YfiO: Outer membrane 99.0 3.4E-08 7.5E-13 84.8 17.7 137 62-221 4-170 (203)
123 PF12688 TPR_5: Tetratrico pep 99.0 1.7E-08 3.6E-13 79.2 14.3 108 102-238 4-115 (120)
124 PF14938 SNAP: Soluble NSF att 99.0 4.4E-08 9.5E-13 88.4 18.9 143 44-221 30-184 (282)
125 PRK15331 chaperone protein Sic 99.0 2E-08 4.3E-13 82.2 14.4 112 104-245 42-154 (165)
126 PF13414 TPR_11: TPR repeat; P 99.0 3.3E-09 7.1E-14 74.5 8.5 67 62-130 2-69 (69)
127 KOG3060 Uncharacterized conser 99.0 8.2E-08 1.8E-12 83.2 17.9 134 40-201 97-234 (289)
128 KOG0495 HAT repeat protein [RN 99.0 1.4E-07 3.1E-12 90.9 20.6 203 17-221 639-880 (913)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 3.1E-08 6.8E-13 92.8 16.1 120 67-217 173-293 (395)
130 KOG1156 N-terminal acetyltrans 98.9 1E-07 2.2E-12 91.7 19.6 248 20-272 32-312 (700)
131 PRK10866 outer membrane biogen 98.9 2.1E-07 4.6E-12 82.1 20.1 138 61-221 30-204 (243)
132 PF12569 NARP1: NMDA receptor- 98.9 3.7E-07 8E-12 88.6 23.3 183 37-221 12-257 (517)
133 KOG0543 FKBP-type peptidyl-pro 98.9 2.9E-08 6.3E-13 91.1 14.5 130 66-221 211-355 (397)
134 PRK11906 transcriptional regul 98.9 5.5E-08 1.2E-12 91.2 16.6 149 44-220 273-435 (458)
135 KOG1174 Anaphase-promoting com 98.9 3.4E-07 7.3E-12 84.2 20.7 214 32-247 199-435 (564)
136 PRK10153 DNA-binding transcrip 98.9 9.3E-08 2E-12 93.0 18.2 140 57-223 331-484 (517)
137 KOG1128 Uncharacterized conser 98.9 1.6E-07 3.5E-12 91.4 19.4 175 35-222 404-583 (777)
138 PRK15331 chaperone protein Sic 98.9 3.2E-08 6.9E-13 81.0 12.4 116 58-202 32-147 (165)
139 COG4700 Uncharacterized protei 98.9 3.4E-07 7.4E-12 76.1 18.5 153 42-221 69-222 (251)
140 KOG2376 Signal recognition par 98.9 1.2E-07 2.7E-12 90.3 18.0 198 22-225 39-257 (652)
141 KOG4162 Predicted calmodulin-b 98.9 3.7E-08 8E-13 96.2 14.7 130 37-194 658-789 (799)
142 PF12688 TPR_5: Tetratrico pep 98.9 6.8E-08 1.5E-12 75.8 13.4 101 64-187 2-103 (120)
143 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 7.8E-09 1.7E-13 96.8 9.5 69 153-221 69-141 (453)
144 PLN03077 Protein ECB2; Provisi 98.9 2.3E-07 5E-12 95.9 20.3 199 13-218 406-651 (857)
145 PRK10803 tol-pal system protei 98.8 7.1E-08 1.5E-12 86.0 13.1 100 32-131 146-249 (263)
146 KOG1128 Uncharacterized conser 98.8 3.5E-08 7.5E-13 96.0 11.3 177 37-222 432-617 (777)
147 PF13424 TPR_12: Tetratricopep 98.8 1E-08 2.2E-13 73.9 5.3 64 158-221 4-75 (78)
148 KOG4340 Uncharacterized conser 98.8 3.8E-07 8.3E-12 80.9 15.9 181 36-221 17-207 (459)
149 KOG0543 FKBP-type peptidyl-pro 98.8 1.2E-07 2.5E-12 87.2 12.6 106 105-221 214-320 (397)
150 PF14559 TPR_19: Tetratricopep 98.7 4.6E-08 1E-12 68.3 6.9 53 169-221 1-54 (68)
151 PF14559 TPR_19: Tetratricopep 98.7 6.6E-08 1.4E-12 67.5 7.6 65 40-106 2-66 (68)
152 KOG0550 Molecular chaperone (D 98.7 2.1E-07 4.6E-12 85.5 12.8 127 39-191 213-353 (486)
153 PRK04841 transcriptional regul 98.7 1.7E-06 3.6E-11 89.9 20.8 168 36-221 459-641 (903)
154 PF13371 TPR_9: Tetratricopept 98.7 1.1E-07 2.5E-12 67.3 8.3 62 107-194 3-64 (73)
155 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 9.3E-08 2E-12 89.6 9.8 71 58-128 70-141 (453)
156 COG0457 NrfG FOG: TPR repeat [ 98.7 6.8E-06 1.5E-10 67.6 20.2 191 29-221 59-265 (291)
157 COG4976 Predicted methyltransf 98.7 5.3E-08 1.2E-12 83.1 7.3 106 168-279 4-110 (287)
158 PF13424 TPR_12: Tetratricopep 98.7 9.9E-08 2.1E-12 68.7 7.6 70 100-188 6-75 (78)
159 KOG1130 Predicted G-alpha GTPa 98.6 6.2E-08 1.3E-12 89.0 7.0 188 32-221 58-304 (639)
160 PF13371 TPR_9: Tetratricopept 98.6 1.8E-07 3.9E-12 66.3 8.0 57 165-221 1-58 (73)
161 KOG1130 Predicted G-alpha GTPa 98.6 2.2E-07 4.9E-12 85.4 10.2 186 36-221 24-264 (639)
162 PRK04841 transcriptional regul 98.6 6.8E-06 1.5E-10 85.4 22.7 168 34-221 414-602 (903)
163 PF04733 Coatomer_E: Coatomer 98.6 1E-06 2.2E-11 79.8 14.4 149 17-194 120-271 (290)
164 PRK11906 transcriptional regul 98.6 2.1E-06 4.6E-11 80.8 16.0 139 55-221 240-401 (458)
165 COG1729 Uncharacterized protei 98.6 9.3E-07 2E-11 77.7 12.9 106 66-194 144-250 (262)
166 COG0457 NrfG FOG: TPR repeat [ 98.6 2E-05 4.4E-10 64.8 20.3 176 42-221 36-231 (291)
167 PF13512 TPR_18: Tetratricopep 98.6 1.9E-06 4.1E-11 69.1 13.2 108 63-193 10-133 (142)
168 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.3E-06 5.1E-11 80.3 16.0 115 40-185 180-294 (395)
169 KOG2376 Signal recognition par 98.6 2.9E-06 6.3E-11 81.2 16.0 158 31-220 14-203 (652)
170 KOG4555 TPR repeat-containing 98.5 9.8E-06 2.1E-10 63.8 13.7 90 39-128 53-144 (175)
171 PF13428 TPR_14: Tetratricopep 98.5 3.6E-07 7.8E-12 58.5 4.9 41 160-200 2-43 (44)
172 PF12569 NARP1: NMDA receptor- 98.4 1.4E-05 3E-10 77.8 17.5 138 33-189 198-335 (517)
173 KOG3785 Uncharacterized conser 98.4 9.3E-06 2E-10 73.7 14.9 174 39-221 32-214 (557)
174 KOG4234 TPR repeat-containing 98.4 5.2E-06 1.1E-10 69.9 11.6 92 109-221 105-197 (271)
175 PF06552 TOM20_plant: Plant sp 98.4 6.2E-06 1.3E-10 68.4 11.7 49 153-201 63-123 (186)
176 PF00515 TPR_1: Tetratricopept 98.4 8.7E-07 1.9E-11 53.2 4.9 33 160-192 2-34 (34)
177 COG4105 ComL DNA uptake lipopr 98.4 0.00014 3E-09 63.7 20.4 186 31-226 36-237 (254)
178 COG3071 HemY Uncharacterized e 98.4 0.00021 4.5E-09 65.8 22.3 188 31-221 120-357 (400)
179 KOG3081 Vesicle coat complex C 98.3 7.4E-05 1.6E-09 65.5 17.7 139 66-215 111-264 (299)
180 COG1729 Uncharacterized protei 98.3 1E-05 2.3E-10 71.2 12.2 100 32-131 144-247 (262)
181 KOG4648 Uncharacterized conser 98.3 1.1E-06 2.5E-11 79.2 6.2 183 36-221 104-296 (536)
182 COG4700 Uncharacterized protei 98.3 4E-05 8.7E-10 63.9 14.5 130 32-188 92-222 (251)
183 PF13512 TPR_18: Tetratricopep 98.3 1.4E-05 3.1E-10 64.0 11.6 102 30-131 11-131 (142)
184 KOG4234 TPR repeat-containing 98.3 9.5E-06 2.1E-10 68.3 10.9 100 64-194 96-203 (271)
185 PF13431 TPR_17: Tetratricopep 98.3 8.3E-07 1.8E-11 53.5 3.0 32 181-212 1-33 (34)
186 PF07719 TPR_2: Tetratricopept 98.3 2.4E-06 5.2E-11 51.0 5.0 33 160-192 2-34 (34)
187 PF13431 TPR_17: Tetratricopep 98.3 8.4E-07 1.8E-11 53.5 2.9 34 51-84 1-34 (34)
188 PF04184 ST7: ST7 protein; In 98.2 0.00014 3.1E-09 68.8 18.5 57 177-241 364-427 (539)
189 COG4785 NlpI Lipoprotein NlpI, 98.2 3.1E-05 6.7E-10 66.1 12.5 167 22-192 92-270 (297)
190 KOG1070 rRNA processing protei 98.2 0.00028 6.1E-09 73.6 21.3 178 12-221 1440-1629(1710)
191 KOG4555 TPR repeat-containing 98.2 7.1E-05 1.5E-09 59.0 12.7 105 66-194 46-150 (175)
192 PF10300 DUF3808: Protein of u 98.1 0.00033 7E-09 67.7 18.9 156 41-221 200-376 (468)
193 KOG4642 Chaperone-dependent E3 98.1 1.4E-05 3E-10 69.0 7.7 90 106-221 17-107 (284)
194 KOG3081 Vesicle coat complex C 98.1 0.0016 3.4E-08 57.3 20.4 158 64-223 73-238 (299)
195 COG4105 ComL DNA uptake lipopr 98.1 0.00072 1.6E-08 59.2 18.2 136 63-221 34-196 (254)
196 KOG4648 Uncharacterized conser 98.0 2.5E-05 5.5E-10 70.7 9.1 101 66-194 100-200 (536)
197 KOG1915 Cell cycle control pro 98.0 0.0016 3.5E-08 61.5 19.8 178 15-221 341-536 (677)
198 KOG1915 Cell cycle control pro 97.9 0.0042 9E-08 58.8 21.9 195 22-243 315-534 (677)
199 PF03704 BTAD: Bacterial trans 97.9 0.00062 1.3E-08 54.8 14.8 61 160-220 63-124 (146)
200 PF06552 TOM20_plant: Plant sp 97.9 4.9E-05 1.1E-09 63.1 8.1 89 45-135 7-116 (186)
201 PF13181 TPR_8: Tetratricopept 97.9 1.9E-05 4.1E-10 47.1 4.2 33 160-192 2-34 (34)
202 COG3898 Uncharacterized membra 97.9 0.0049 1.1E-07 57.0 21.2 180 40-221 165-392 (531)
203 KOG2047 mRNA splicing factor [ 97.9 0.002 4.3E-08 62.9 19.6 176 35-221 353-540 (835)
204 KOG2796 Uncharacterized conser 97.9 0.0012 2.5E-08 58.2 16.2 137 64-221 178-315 (366)
205 KOG2053 Mitochondrial inherita 97.9 0.014 2.9E-07 59.0 25.6 242 20-271 34-300 (932)
206 KOG1941 Acetylcholine receptor 97.9 0.00065 1.4E-08 62.2 15.0 185 15-219 145-358 (518)
207 KOG4642 Chaperone-dependent E3 97.9 4.6E-05 9.9E-10 65.8 7.2 88 39-128 20-107 (284)
208 KOG1585 Protein required for f 97.8 0.0025 5.4E-08 55.5 17.4 189 31-243 33-239 (308)
209 KOG1941 Acetylcholine receptor 97.8 0.00043 9.2E-09 63.3 12.6 163 43-221 97-275 (518)
210 PF03704 BTAD: Bacterial trans 97.8 0.00094 2E-08 53.7 13.6 91 36-128 13-125 (146)
211 COG4785 NlpI Lipoprotein NlpI, 97.8 0.0021 4.6E-08 55.1 15.7 166 43-221 79-266 (297)
212 KOG1586 Protein required for f 97.7 0.003 6.5E-08 54.7 16.2 144 43-221 28-183 (288)
213 KOG3785 Uncharacterized conser 97.7 0.00067 1.5E-08 61.9 12.9 137 36-198 64-224 (557)
214 KOG1586 Protein required for f 97.7 0.011 2.4E-07 51.2 19.6 190 32-243 37-245 (288)
215 PF13428 TPR_14: Tetratricopep 97.7 9E-05 1.9E-09 47.2 5.2 33 64-96 2-34 (44)
216 PF00515 TPR_1: Tetratricopept 97.7 9.9E-05 2.1E-09 44.0 4.7 33 63-95 1-33 (34)
217 COG2976 Uncharacterized protei 97.7 0.0028 6.1E-08 53.4 14.8 116 81-221 70-188 (207)
218 PF07719 TPR_2: Tetratricopept 97.7 0.00011 2.4E-09 43.6 4.7 33 63-95 1-33 (34)
219 KOG0545 Aryl-hydrocarbon recep 97.7 0.0011 2.4E-08 57.7 12.5 107 106-221 185-293 (329)
220 KOG4340 Uncharacterized conser 97.7 0.0014 3E-08 58.7 13.4 137 26-188 41-207 (459)
221 COG3118 Thioredoxin domain-con 97.6 0.0037 8.1E-08 55.8 15.2 150 66-244 137-287 (304)
222 KOG2053 Mitochondrial inherita 97.6 0.0017 3.7E-08 65.3 14.1 90 39-130 19-108 (932)
223 KOG2610 Uncharacterized conser 97.6 0.0027 5.9E-08 57.7 14.1 60 67-128 107-166 (491)
224 KOG1070 rRNA processing protei 97.5 0.0078 1.7E-07 63.3 18.7 154 42-222 1510-1664(1710)
225 PF04184 ST7: ST7 protein; In 97.5 0.0022 4.7E-08 61.0 13.6 135 76-218 181-321 (539)
226 PF13176 TPR_7: Tetratricopept 97.5 0.00016 3.5E-09 44.0 4.0 28 161-188 1-28 (36)
227 KOG2796 Uncharacterized conser 97.5 0.003 6.6E-08 55.6 13.1 157 39-221 187-353 (366)
228 COG3118 Thioredoxin domain-con 97.5 0.012 2.5E-07 52.7 17.1 152 39-219 144-299 (304)
229 KOG2471 TPR repeat-containing 97.5 0.00076 1.7E-08 63.8 9.8 157 40-205 217-382 (696)
230 COG2976 Uncharacterized protei 97.5 0.0093 2E-07 50.3 15.3 120 47-194 70-194 (207)
231 KOG2610 Uncharacterized conser 97.5 0.0069 1.5E-07 55.1 15.2 55 162-216 178-233 (491)
232 PF10300 DUF3808: Protein of u 97.4 0.0038 8.3E-08 60.4 14.2 124 42-190 246-378 (468)
233 PF13174 TPR_6: Tetratricopept 97.4 0.00027 5.8E-09 41.5 3.8 32 161-192 2-33 (33)
234 KOG2047 mRNA splicing factor [ 97.4 0.039 8.5E-07 54.2 19.8 165 33-223 391-581 (835)
235 PF14561 TPR_20: Tetratricopep 97.3 0.0026 5.7E-08 47.2 8.8 79 48-126 7-85 (90)
236 COG0790 FOG: TPR repeat, SEL1 97.3 0.022 4.7E-07 51.2 16.6 147 41-221 89-266 (292)
237 PF12968 DUF3856: Domain of Un 97.3 0.0076 1.6E-07 46.8 11.2 95 109-220 19-128 (144)
238 PF13281 DUF4071: Domain of un 97.2 0.02 4.3E-07 53.4 16.1 134 42-193 195-339 (374)
239 KOG1585 Protein required for f 97.2 0.015 3.2E-07 50.8 14.0 133 66-219 34-177 (308)
240 PF13281 DUF4071: Domain of un 97.2 0.1 2.2E-06 48.7 20.4 159 36-222 148-335 (374)
241 smart00028 TPR Tetratricopepti 97.2 0.00057 1.2E-08 38.6 3.4 33 160-192 2-34 (34)
242 KOG0376 Serine-threonine phosp 97.2 0.00085 1.9E-08 63.3 6.2 94 107-226 12-106 (476)
243 PF05843 Suf: Suppressor of fo 97.1 0.019 4E-07 51.8 14.6 134 36-194 8-142 (280)
244 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0022 4.8E-08 58.1 7.8 94 105-221 87-182 (390)
245 COG3898 Uncharacterized membra 97.1 0.15 3.1E-06 47.6 19.3 99 27-128 116-217 (531)
246 KOG1550 Extracellular protein 97.0 0.063 1.4E-06 53.1 17.9 178 7-219 220-424 (552)
247 KOG0545 Aryl-hydrocarbon recep 96.9 0.01 2.2E-07 51.8 10.3 106 63-194 178-299 (329)
248 PF13181 TPR_8: Tetratricopept 96.9 0.0017 3.6E-08 38.4 4.0 31 64-94 2-32 (34)
249 KOG1308 Hsp70-interacting prot 96.9 0.00095 2.1E-08 60.6 3.9 90 39-130 124-213 (377)
250 PRK10941 hypothetical protein; 96.9 0.013 2.8E-07 52.5 11.1 67 32-98 184-250 (269)
251 PF13374 TPR_10: Tetratricopep 96.9 0.0025 5.4E-08 39.3 4.6 29 160-188 3-31 (42)
252 PF13176 TPR_7: Tetratricopept 96.9 0.0021 4.5E-08 39.0 4.1 24 105-128 5-28 (36)
253 PF13174 TPR_6: Tetratricopept 96.8 0.0016 3.4E-08 38.1 3.4 32 64-95 1-32 (33)
254 KOG3617 WD40 and TPR repeat-co 96.8 0.066 1.4E-06 54.1 16.3 163 40-221 811-996 (1416)
255 PF05843 Suf: Suppressor of fo 96.8 0.047 1E-06 49.2 14.3 129 65-221 3-136 (280)
256 KOG0376 Serine-threonine phosp 96.8 0.0021 4.5E-08 60.8 5.7 98 69-194 10-107 (476)
257 KOG4507 Uncharacterized conser 96.8 0.0041 8.8E-08 60.2 7.6 99 69-194 613-711 (886)
258 PRK10941 hypothetical protein; 96.7 0.025 5.4E-07 50.6 11.3 81 160-244 182-263 (269)
259 PF12968 DUF3856: Domain of Un 96.7 0.12 2.5E-06 40.3 13.1 101 73-188 19-129 (144)
260 KOG1308 Hsp70-interacting prot 96.5 0.0026 5.6E-08 57.9 4.0 118 74-219 125-242 (377)
261 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.0097 2.1E-07 39.5 5.7 38 161-198 3-40 (53)
262 PF09986 DUF2225: Uncharacteri 96.5 0.11 2.3E-06 45.0 13.4 108 112-239 90-211 (214)
263 PF02259 FAT: FAT domain; Int 96.4 0.32 7E-06 44.5 17.5 147 59-205 142-305 (352)
264 PF14561 TPR_20: Tetratricopep 96.3 0.035 7.6E-07 41.1 8.3 44 178-221 7-51 (90)
265 PF09613 HrpB1_HrpK: Bacterial 96.3 0.065 1.4E-06 43.9 10.4 87 62-176 9-95 (160)
266 KOG2300 Uncharacterized conser 96.2 0.6 1.3E-05 44.8 17.4 162 39-222 333-515 (629)
267 PF09613 HrpB1_HrpK: Bacterial 96.2 0.093 2E-06 43.0 10.7 82 32-115 13-94 (160)
268 PF04910 Tcf25: Transcriptiona 96.1 0.33 7.2E-06 45.4 15.8 35 160-194 179-228 (360)
269 COG0790 FOG: TPR repeat, SEL1 96.1 0.87 1.9E-05 40.8 18.1 148 41-221 53-220 (292)
270 KOG3617 WD40 and TPR repeat-co 96.1 0.16 3.5E-06 51.4 13.8 61 160-220 859-940 (1416)
271 smart00028 TPR Tetratricopepti 95.8 0.013 2.8E-07 32.6 3.3 31 65-95 3-33 (34)
272 KOG1550 Extracellular protein 95.8 0.37 8E-06 47.7 15.5 141 44-221 227-393 (552)
273 PF09986 DUF2225: Uncharacteri 95.8 0.33 7.2E-06 41.9 13.4 114 74-201 88-209 (214)
274 COG4976 Predicted methyltransf 95.7 0.02 4.3E-07 49.6 5.0 58 39-96 5-62 (287)
275 KOG4507 Uncharacterized conser 95.7 0.08 1.7E-06 51.6 9.5 113 54-193 204-317 (886)
276 KOG0551 Hsp90 co-chaperone CNS 95.6 0.13 2.7E-06 47.0 10.2 103 65-193 83-187 (390)
277 PF10602 RPN7: 26S proteasome 95.6 0.24 5.2E-06 41.5 11.5 108 62-189 35-143 (177)
278 PF13374 TPR_10: Tetratricopep 95.5 0.032 7E-07 34.1 4.4 24 105-128 8-31 (42)
279 TIGR02561 HrpB1_HrpK type III 95.3 0.19 4.2E-06 40.6 9.2 63 64-128 11-73 (153)
280 KOG3824 Huntingtin interacting 95.3 0.065 1.4E-06 48.4 7.0 64 163-226 120-184 (472)
281 COG3914 Spy Predicted O-linked 95.2 0.77 1.7E-05 44.9 14.7 141 43-205 45-189 (620)
282 KOG2300 Uncharacterized conser 95.2 2 4.3E-05 41.4 17.0 186 8-221 254-474 (629)
283 PF08424 NRDE-2: NRDE-2, neces 95.2 2.4 5.3E-05 38.9 18.4 28 196-223 158-185 (321)
284 KOG3824 Huntingtin interacting 95.2 0.041 8.9E-07 49.7 5.5 63 109-197 126-189 (472)
285 KOG1839 Uncharacterized protei 95.0 0.23 5E-06 52.5 11.2 172 31-221 934-1128(1236)
286 TIGR03504 FimV_Cterm FimV C-te 95.0 0.066 1.4E-06 34.0 4.7 41 196-241 3-43 (44)
287 PF07721 TPR_4: Tetratricopept 95.0 0.03 6.4E-07 31.2 2.7 23 161-183 3-25 (26)
288 PF02259 FAT: FAT domain; Int 94.9 1.6 3.4E-05 39.9 15.5 99 32-130 149-289 (352)
289 PRK15180 Vi polysaccharide bio 94.8 0.14 3E-06 49.0 8.2 130 39-197 299-430 (831)
290 PF12862 Apc5: Anaphase-promot 94.7 0.2 4.4E-06 37.2 7.5 68 110-194 9-76 (94)
291 PF12862 Apc5: Anaphase-promot 94.7 0.15 3.3E-06 37.9 6.7 73 170-243 9-91 (94)
292 KOG2471 TPR repeat-containing 94.6 0.19 4.1E-06 48.1 8.5 102 28-129 238-365 (696)
293 KOG1464 COP9 signalosome, subu 94.5 1.2 2.6E-05 39.8 12.7 210 40-282 38-273 (440)
294 COG2909 MalT ATP-dependent tra 94.4 3.4 7.4E-05 42.5 17.3 163 36-221 465-647 (894)
295 PF07720 TPR_3: Tetratricopept 94.4 0.15 3.3E-06 30.9 5.0 33 160-192 2-36 (36)
296 COG2909 MalT ATP-dependent tra 94.4 5.4 0.00012 41.1 18.6 162 35-217 366-564 (894)
297 PF08424 NRDE-2: NRDE-2, neces 94.3 4.2 9.1E-05 37.3 18.9 165 16-189 6-184 (321)
298 TIGR02561 HrpB1_HrpK type III 94.2 0.66 1.4E-05 37.6 9.7 78 35-114 16-93 (153)
299 KOG0985 Vesicle coat protein c 94.2 1.3 2.9E-05 46.1 13.9 180 13-221 1062-1249(1666)
300 PF14853 Fis1_TPR_C: Fis1 C-te 94.1 0.15 3.2E-06 33.8 4.9 33 64-96 2-34 (53)
301 PF04910 Tcf25: Transcriptiona 93.8 1.6 3.5E-05 40.8 13.1 142 40-220 21-167 (360)
302 PF04781 DUF627: Protein of un 93.7 0.79 1.7E-05 35.2 8.8 102 107-221 4-107 (111)
303 PF07721 TPR_4: Tetratricopept 93.5 0.094 2E-06 29.1 2.7 23 65-87 3-25 (26)
304 COG2912 Uncharacterized conser 93.5 0.34 7.5E-06 43.1 7.5 63 35-97 187-249 (269)
305 PF11207 DUF2989: Protein of u 93.2 0.99 2.1E-05 38.5 9.6 105 11-119 90-198 (203)
306 PF04781 DUF627: Protein of un 92.8 1.2 2.6E-05 34.2 8.6 33 156-188 75-107 (111)
307 KOG1914 mRNA cleavage and poly 92.7 11 0.00024 37.0 17.1 169 51-221 267-464 (656)
308 COG3629 DnrI DNA-binding trans 92.5 1.2 2.7E-05 40.0 9.8 63 158-220 152-215 (280)
309 KOG4814 Uncharacterized conser 92.4 1.2 2.7E-05 44.1 10.2 96 106-221 361-457 (872)
310 PF15015 NYD-SP12_N: Spermatog 92.3 2 4.3E-05 40.7 11.1 103 106-216 183-286 (569)
311 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.24 5.2E-06 30.4 3.5 30 160-189 2-31 (38)
312 PF04053 Coatomer_WDAD: Coatom 92.1 12 0.00026 36.1 17.1 90 37-127 269-375 (443)
313 COG3914 Spy Predicted O-linked 92.1 5.9 0.00013 39.0 14.3 114 82-221 50-171 (620)
314 PF08631 SPO22: Meiosis protei 91.6 9.8 0.00021 34.0 16.7 129 38-190 2-152 (278)
315 KOG3364 Membrane protein invol 91.5 1 2.3E-05 35.9 7.2 78 160-244 33-116 (149)
316 COG2912 Uncharacterized conser 91.4 1.8 3.8E-05 38.6 9.3 62 160-221 182-244 (269)
317 COG3629 DnrI DNA-binding trans 91.2 1.2 2.5E-05 40.2 8.0 65 62-128 152-216 (280)
318 PF07720 TPR_3: Tetratricopept 91.0 0.79 1.7E-05 27.7 4.7 31 64-94 2-34 (36)
319 COG4649 Uncharacterized protei 90.8 8.9 0.00019 32.2 16.8 149 70-243 65-215 (221)
320 PF11207 DUF2989: Protein of u 90.5 1.2 2.5E-05 38.0 7.1 55 157-212 139-198 (203)
321 KOG3616 Selective LIM binding 90.3 2.1 4.5E-05 43.3 9.5 124 41-187 777-910 (1636)
322 PF04053 Coatomer_WDAD: Coatom 90.1 11 0.00025 36.2 14.4 127 74-220 272-401 (443)
323 KOG3616 Selective LIM binding 90.1 6 0.00013 40.2 12.5 63 153-215 989-1057(1636)
324 KOG2396 HAT (Half-A-TPR) repea 89.8 3.3 7.1E-05 40.0 10.1 83 84-194 92-175 (568)
325 PF08631 SPO22: Meiosis protei 89.8 14 0.00031 33.0 17.4 135 74-221 4-150 (278)
326 PF10373 EST1_DNA_bind: Est1 D 89.8 1.8 3.9E-05 38.2 8.2 44 178-221 1-45 (278)
327 PRK13184 pknD serine/threonine 89.8 2 4.4E-05 45.0 9.5 89 39-130 485-583 (932)
328 PF10345 Cohesin_load: Cohesin 89.6 24 0.00053 35.3 18.3 153 46-220 38-207 (608)
329 KOG2581 26S proteasome regulat 89.6 8.3 0.00018 36.5 12.2 131 41-193 138-281 (493)
330 COG3947 Response regulator con 89.4 1.4 3E-05 39.8 6.9 58 161-218 281-339 (361)
331 KOG2041 WD40 repeat protein [G 89.2 6.5 0.00014 39.7 11.9 141 73-218 770-936 (1189)
332 PF12854 PPR_1: PPR repeat 89.1 1.1 2.3E-05 26.5 4.2 26 99-124 7-32 (34)
333 PF10602 RPN7: 26S proteasome 89.1 9.2 0.0002 31.9 11.5 97 31-127 38-141 (177)
334 PF12854 PPR_1: PPR repeat 89.0 0.94 2E-05 26.8 4.0 29 189-217 4-32 (34)
335 PF00244 14-3-3: 14-3-3 protei 88.8 9.7 0.00021 33.4 11.9 47 175-221 142-198 (236)
336 PF07079 DUF1347: Protein of u 88.7 14 0.0003 35.6 13.2 129 66-221 9-157 (549)
337 PRK13184 pknD serine/threonine 88.6 3.1 6.7E-05 43.7 9.9 95 72-194 484-587 (932)
338 PF10579 Rapsyn_N: Rapsyn N-te 87.8 1.9 4.1E-05 31.0 5.5 57 163-219 10-70 (80)
339 PF10373 EST1_DNA_bind: Est1 D 87.3 2.6 5.6E-05 37.2 7.5 61 48-111 1-62 (278)
340 TIGR03504 FimV_Cterm FimV C-te 86.9 1.9 4.2E-05 27.3 4.6 27 67-93 3-29 (44)
341 PF10255 Paf67: RNA polymerase 85.9 21 0.00045 34.0 12.9 107 161-269 124-251 (404)
342 PF07079 DUF1347: Protein of u 85.7 23 0.0005 34.1 12.8 120 41-192 391-525 (549)
343 KOG1258 mRNA processing protei 84.9 43 0.00093 33.2 15.9 166 38-206 306-489 (577)
344 PF10579 Rapsyn_N: Rapsyn N-te 84.6 9.5 0.00021 27.5 7.6 62 66-128 9-72 (80)
345 KOG1920 IkappaB kinase complex 84.1 9.1 0.0002 40.7 10.3 152 41-221 863-1028(1265)
346 KOG1538 Uncharacterized conser 83.9 17 0.00036 36.6 11.4 47 167-217 781-829 (1081)
347 KOG0985 Vesicle coat protein c 83.8 65 0.0014 34.4 17.7 158 36-219 1055-1221(1666)
348 COG4649 Uncharacterized protei 83.8 25 0.00054 29.6 16.5 145 30-201 60-209 (221)
349 KOG1310 WD40 repeat protein [G 83.7 4.8 0.0001 39.3 7.6 90 77-194 388-480 (758)
350 smart00101 14_3_3 14-3-3 homol 83.7 30 0.00066 30.5 15.3 47 175-221 144-200 (244)
351 KOG0890 Protein kinase of the 83.1 39 0.00085 38.8 15.0 162 45-221 1645-1833(2382)
352 KOG3807 Predicted membrane pro 82.6 36 0.00078 31.6 12.3 56 67-122 279-334 (556)
353 KOG0276 Vesicle coat complex C 82.5 23 0.00049 35.3 11.7 49 73-128 647-695 (794)
354 KOG0530 Protein farnesyltransf 82.3 37 0.0008 30.5 14.6 124 43-194 57-182 (318)
355 PF10516 SHNi-TPR: SHNi-TPR; 82.0 3.4 7.3E-05 25.3 4.0 29 101-129 3-31 (38)
356 KOG3364 Membrane protein invol 81.7 16 0.00036 29.2 8.7 67 63-130 32-102 (149)
357 COG4455 ImpE Protein of avirul 81.6 8.9 0.00019 33.4 7.7 58 39-96 11-68 (273)
358 KOG0530 Protein farnesyltransf 81.1 41 0.00089 30.2 13.3 156 20-221 19-176 (318)
359 PF13041 PPR_2: PPR repeat fam 81.1 4.2 9.2E-05 25.9 4.5 29 100-128 4-32 (50)
360 KOG2041 WD40 repeat protein [G 81.0 42 0.00091 34.2 13.0 115 63-185 796-936 (1189)
361 KOG2396 HAT (Half-A-TPR) repea 81.0 17 0.00037 35.3 10.1 86 47-133 89-174 (568)
362 cd02682 MIT_AAA_Arch MIT: doma 80.7 3.4 7.4E-05 29.4 4.2 35 160-194 7-48 (75)
363 smart00386 HAT HAT (Half-A-TPR 80.7 4 8.6E-05 22.7 4.0 29 173-201 1-30 (33)
364 KOG4814 Uncharacterized conser 80.4 14 0.0003 37.0 9.5 89 39-129 364-458 (872)
365 COG3947 Response regulator con 78.9 9.7 0.00021 34.5 7.4 61 66-128 282-342 (361)
366 PF13041 PPR_2: PPR repeat fam 78.6 9.5 0.00021 24.1 5.6 34 161-194 5-40 (50)
367 KOG1310 WD40 repeat protein [G 78.5 9.2 0.0002 37.4 7.6 86 43-130 388-476 (758)
368 PF01535 PPR: PPR repeat; Int 78.2 4 8.6E-05 22.6 3.4 26 102-127 3-28 (31)
369 KOG1839 Uncharacterized protei 77.3 18 0.0004 38.9 9.9 136 66-221 935-1086(1236)
370 PF04212 MIT: MIT (microtubule 76.8 4.9 0.00011 27.7 4.1 28 161-188 7-34 (69)
371 PF10255 Paf67: RNA polymerase 76.7 6.6 0.00014 37.3 6.1 61 68-129 127-194 (404)
372 KOG1538 Uncharacterized conser 76.3 8.4 0.00018 38.6 6.7 28 159-186 804-831 (1081)
373 smart00299 CLH Clathrin heavy 76.3 35 0.00075 26.6 13.7 76 41-124 19-94 (140)
374 PF11846 DUF3366: Domain of un 76.2 11 0.00024 31.5 7.0 46 48-94 130-175 (193)
375 KOG1464 COP9 signalosome, subu 76.1 61 0.0013 29.3 13.8 125 77-221 41-174 (440)
376 TIGR00756 PPR pentatricopeptid 76.1 6.8 0.00015 22.0 4.1 27 102-128 3-29 (35)
377 PF15015 NYD-SP12_N: Spermatog 75.5 13 0.00027 35.5 7.4 86 33-120 187-283 (569)
378 smart00386 HAT HAT (Half-A-TPR 75.3 8.5 0.00018 21.3 4.3 26 44-69 2-27 (33)
379 PF10345 Cohesin_load: Cohesin 74.3 1E+02 0.0022 31.0 19.3 166 33-219 63-252 (608)
380 cd02680 MIT_calpain7_2 MIT: do 73.7 7.6 0.00016 27.7 4.4 21 168-188 15-35 (75)
381 KOG0276 Vesicle coat complex C 73.6 42 0.00091 33.6 10.6 100 39-188 596-695 (794)
382 KOG0890 Protein kinase of the 72.6 24 0.00052 40.4 9.7 121 68-219 1388-1510(2382)
383 PF14863 Alkyl_sulf_dimr: Alky 72.1 11 0.00023 30.4 5.4 40 37-76 78-117 (141)
384 PF11846 DUF3366: Domain of un 71.8 16 0.00036 30.5 6.9 34 158-191 143-176 (193)
385 cd02681 MIT_calpain7_1 MIT: do 71.5 9.5 0.00021 27.2 4.5 28 161-188 8-35 (76)
386 PF11817 Foie-gras_1: Foie gra 71.2 49 0.0011 29.0 10.0 88 78-185 153-244 (247)
387 KOG3783 Uncharacterized conser 70.8 1.1E+02 0.0024 30.1 15.9 194 23-221 261-520 (546)
388 PRK15180 Vi polysaccharide bio 70.3 39 0.00085 32.9 9.4 120 76-223 302-422 (831)
389 PF10952 DUF2753: Protein of u 70.1 16 0.00036 28.7 5.8 91 162-252 4-119 (140)
390 PF01535 PPR: PPR repeat; Int 69.8 7.8 0.00017 21.3 3.2 25 162-186 3-27 (31)
391 COG4455 ImpE Protein of avirul 69.4 46 0.001 29.1 8.9 54 168-221 10-64 (273)
392 cd02684 MIT_2 MIT: domain cont 69.3 12 0.00026 26.5 4.6 24 165-188 12-35 (75)
393 cd02683 MIT_1 MIT: domain cont 68.1 11 0.00024 26.9 4.3 28 161-188 8-35 (77)
394 PF14929 TAF1_subA: TAF RNA Po 67.4 1.4E+02 0.003 29.8 13.8 134 45-219 300-439 (547)
395 cd02679 MIT_spastin MIT: domai 67.0 11 0.00024 27.0 4.1 26 162-187 11-36 (79)
396 cd02681 MIT_calpain7_1 MIT: do 66.9 10 0.00022 27.1 3.8 23 70-92 13-35 (76)
397 KOG3807 Predicted membrane pro 66.5 1.1E+02 0.0024 28.5 18.6 57 161-217 277-336 (556)
398 PF13812 PPR_3: Pentatricopept 66.0 17 0.00037 20.4 4.2 26 102-127 4-29 (34)
399 cd02680 MIT_calpain7_2 MIT: do 65.6 9.9 0.00021 27.1 3.5 17 76-92 19-35 (75)
400 PF11817 Foie-gras_1: Foie gra 65.5 35 0.00075 30.0 7.8 59 161-219 180-245 (247)
401 PF09205 DUF1955: Domain of un 64.9 39 0.00084 27.2 7.0 59 163-221 89-149 (161)
402 TIGR03362 VI_chp_7 type VI sec 61.4 1.3E+02 0.0028 27.4 16.4 155 63-221 100-279 (301)
403 smart00745 MIT Microtubule Int 61.3 20 0.00043 25.1 4.5 27 162-188 11-37 (77)
404 PHA02537 M terminase endonucle 61.1 47 0.001 29.0 7.6 22 172-193 191-212 (230)
405 PF14863 Alkyl_sulf_dimr: Alky 60.3 31 0.00067 27.7 6.0 50 160-209 71-121 (141)
406 smart00671 SEL1 Sel1-like repe 60.0 20 0.00044 20.4 3.8 28 161-188 3-34 (36)
407 KOG1258 mRNA processing protei 59.1 2E+02 0.0043 28.7 18.1 128 58-212 292-420 (577)
408 KOG1914 mRNA cleavage and poly 59.1 1.9E+02 0.0042 28.7 16.5 70 21-91 12-81 (656)
409 PF06957 COPI_C: Coatomer (COP 58.9 1.3E+02 0.0028 28.9 10.7 126 106-247 211-351 (422)
410 PF08238 Sel1: Sel1 repeat; I 58.8 25 0.00054 20.5 4.1 29 160-188 2-37 (39)
411 PF09205 DUF1955: Domain of un 58.3 97 0.0021 25.0 8.4 52 74-127 97-148 (161)
412 PF09797 NatB_MDM20: N-acetylt 58.3 1.1E+02 0.0024 28.4 10.3 50 76-128 196-245 (365)
413 cd02683 MIT_1 MIT: domain cont 57.8 19 0.00042 25.6 3.9 18 73-90 16-33 (77)
414 PF02064 MAS20: MAS20 protein 57.5 32 0.00069 26.9 5.4 29 67-95 67-95 (121)
415 PF09797 NatB_MDM20: N-acetylt 57.3 66 0.0014 29.9 8.6 82 45-128 199-281 (365)
416 COG5191 Uncharacterized conser 57.1 38 0.00083 31.1 6.5 71 156-226 104-176 (435)
417 PHA02537 M terminase endonucle 56.9 1.4E+02 0.0029 26.2 11.0 92 39-130 93-209 (230)
418 cd00280 TRFH Telomeric Repeat 56.3 1.2E+02 0.0027 25.6 10.0 44 163-207 115-159 (200)
419 COG5191 Uncharacterized conser 56.1 18 0.00039 33.2 4.3 79 52-131 96-174 (435)
420 KOG2997 F-box protein FBX9 [Ge 55.5 17 0.00036 33.3 4.0 33 162-194 22-54 (366)
421 cd02678 MIT_VPS4 MIT: domain c 54.1 26 0.00056 24.6 4.1 27 162-188 9-35 (75)
422 KOG2422 Uncharacterized conser 54.1 2.4E+02 0.0052 28.2 13.7 160 45-219 254-446 (665)
423 COG4941 Predicted RNA polymera 53.4 55 0.0012 30.4 6.9 88 41-130 308-396 (415)
424 cd02682 MIT_AAA_Arch MIT: doma 52.6 30 0.00065 24.6 4.1 13 75-87 18-30 (75)
425 cd02656 MIT MIT: domain contai 52.5 34 0.00074 23.8 4.5 27 162-188 9-35 (75)
426 KOG1463 26S proteasome regulat 51.5 2.1E+02 0.0045 26.8 11.5 94 36-129 135-239 (411)
427 cd02679 MIT_spastin MIT: domai 50.8 91 0.002 22.4 7.2 48 196-243 12-66 (79)
428 PF10952 DUF2753: Protein of u 50.0 1.3E+02 0.0028 23.8 7.9 80 103-193 5-88 (140)
429 COG5159 RPN6 26S proteasome re 47.7 2.2E+02 0.0049 26.0 12.4 25 196-220 129-153 (421)
430 PF09670 Cas_Cas02710: CRISPR- 47.6 2.5E+02 0.0053 26.4 14.3 54 39-92 141-198 (379)
431 cd02677 MIT_SNX15 MIT: domain 46.9 38 0.00082 24.0 4.0 27 162-188 9-35 (75)
432 PF07219 HemY_N: HemY protein 46.1 87 0.0019 23.6 6.2 28 67-94 63-90 (108)
433 KOG0686 COP9 signalosome, subu 45.5 1.7E+02 0.0037 27.9 9.0 106 64-187 151-257 (466)
434 PF04348 LppC: LppC putative l 45.3 7 0.00015 38.6 0.0 58 66-124 27-86 (536)
435 COG4259 Uncharacterized protei 44.2 42 0.00091 25.4 3.9 37 60-96 69-105 (121)
436 PF12583 TPPII_N: Tripeptidyl 44.0 69 0.0015 25.4 5.3 43 160-202 77-120 (139)
437 PF02064 MAS20: MAS20 protein 43.1 62 0.0013 25.3 5.0 32 163-194 67-98 (121)
438 COG1747 Uncharacterized N-term 43.0 3.5E+02 0.0076 26.9 20.5 170 47-221 84-288 (711)
439 PF12753 Nro1: Nuclear pore co 40.5 57 0.0012 30.9 5.1 31 46-78 335-365 (404)
440 PF04212 MIT: MIT (microtubule 40.2 71 0.0015 21.8 4.5 18 111-128 17-34 (69)
441 KOG0292 Vesicle coat complex C 40.0 2.1E+02 0.0046 30.2 9.2 65 180-248 1070-1136(1202)
442 PF04190 DUF410: Protein of un 39.6 2.7E+02 0.0058 24.6 17.7 62 158-219 89-168 (260)
443 PF05053 Menin: Menin; InterP 39.4 1.2E+02 0.0025 30.2 7.2 62 158-219 276-345 (618)
444 PF00244 14-3-3: 14-3-3 protei 39.3 65 0.0014 28.2 5.2 41 162-202 4-46 (236)
445 PRK11619 lytic murein transgly 39.2 4.3E+02 0.0094 26.9 15.2 163 45-217 295-464 (644)
446 COG5107 RNA14 Pre-mRNA 3'-end 39.2 3.8E+02 0.0083 26.2 14.1 205 51-269 290-534 (660)
447 KOG4151 Myosin assembly protei 38.6 1.2E+02 0.0025 31.3 7.2 91 108-220 62-155 (748)
448 PF02184 HAT: HAT (Half-A-TPR) 38.3 82 0.0018 18.5 3.7 26 174-199 2-27 (32)
449 TIGR00985 3a0801s04tom mitocho 37.9 87 0.0019 25.4 5.2 28 68-95 95-123 (148)
450 KOG1497 COP9 signalosome, subu 37.7 3.4E+02 0.0074 25.2 12.1 106 63-188 103-213 (399)
451 PF10037 MRP-S27: Mitochondria 37.1 1.9E+02 0.0041 27.9 8.2 81 44-128 81-167 (429)
452 KOG2114 Vacuolar assembly/sort 36.9 2.9E+02 0.0063 28.9 9.7 139 9-184 340-515 (933)
453 COG1747 Uncharacterized N-term 35.7 4.2E+02 0.009 26.4 10.1 61 159-221 99-160 (711)
454 COG4941 Predicted RNA polymera 35.1 3.8E+02 0.0083 25.1 14.8 34 45-78 212-245 (415)
455 PRK13883 conjugal transfer pro 34.4 49 0.0011 26.9 3.3 45 231-275 33-77 (151)
456 PF14689 SPOB_a: Sensor_kinase 34.3 1.1E+02 0.0023 20.7 4.5 26 195-220 26-51 (62)
457 KOG1497 COP9 signalosome, subu 33.7 4E+02 0.0086 24.8 9.8 103 100-221 104-213 (399)
458 smart00745 MIT Microtubule Int 33.7 61 0.0013 22.6 3.4 22 108-129 17-38 (77)
459 COG5159 RPN6 26S proteasome re 33.4 3.8E+02 0.0083 24.6 14.9 56 33-88 7-70 (421)
460 TIGR02996 rpt_mate_G_obs repea 33.2 1.2E+02 0.0025 19.1 4.0 32 180-211 3-35 (42)
461 PF10938 YfdX: YfdX protein; 33.1 2.7E+02 0.0057 22.6 9.3 91 36-127 9-145 (155)
462 PRK13835 conjugal transfer pro 32.7 53 0.0012 26.5 3.2 46 231-278 39-84 (145)
463 KOG0546 HSP90 co-chaperone CPR 31.9 71 0.0015 29.8 4.2 36 159-194 309-344 (372)
464 PF12753 Nro1: Nuclear pore co 31.8 65 0.0014 30.5 4.0 32 175-208 334-366 (404)
465 KOG2709 Uncharacterized conser 31.8 50 0.0011 31.5 3.3 28 161-188 24-51 (560)
466 PF07283 TrbH: Conjugal transf 31.1 61 0.0013 25.3 3.2 45 233-278 7-51 (121)
467 PRK15490 Vi polysaccharide bio 30.8 4E+02 0.0087 26.7 9.5 43 43-87 56-98 (578)
468 TIGR03362 VI_chp_7 type VI sec 30.6 4.2E+02 0.0091 24.1 17.2 46 41-87 111-156 (301)
469 PF07163 Pex26: Pex26 protein; 30.6 4.2E+02 0.0091 24.1 10.3 126 35-182 41-181 (309)
470 KOG4279 Serine/threonine prote 30.3 4E+02 0.0086 27.9 9.3 132 41-193 255-400 (1226)
471 PF12739 TRAPPC-Trs85: ER-Golg 30.0 4.9E+02 0.011 24.7 10.6 104 98-221 207-329 (414)
472 PF14852 Fis1_TPR_N: Fis1 N-te 29.1 1.1E+02 0.0023 18.3 3.3 27 161-187 3-32 (35)
473 KOG1920 IkappaB kinase complex 28.9 3.2E+02 0.007 29.7 8.8 11 260-270 1210-1220(1265)
474 PF04348 LppC: LppC putative l 28.9 19 0.0004 35.7 0.0 115 77-217 2-123 (536)
475 COG2178 Predicted RNA-binding 27.6 2.8E+02 0.006 23.7 6.7 26 195-220 32-57 (204)
476 PF00637 Clathrin: Region in C 27.1 33 0.00072 26.8 1.2 76 41-124 19-95 (143)
477 PF09670 Cas_Cas02710: CRISPR- 26.9 5.3E+02 0.012 24.2 12.8 62 67-128 135-198 (379)
478 KOG4014 Uncharacterized conser 26.7 4.1E+02 0.0088 22.8 12.4 172 37-221 43-233 (248)
479 PF10366 Vps39_1: Vacuolar sor 26.2 1.4E+02 0.003 22.7 4.4 25 196-220 43-67 (108)
480 smart00777 Mad3_BUB1_I Mad3/BU 25.9 3.2E+02 0.007 21.3 6.8 45 80-124 80-124 (125)
481 KOG0546 HSP90 co-chaperone CPR 25.5 59 0.0013 30.3 2.6 59 37-95 283-341 (372)
482 PF12583 TPPII_N: Tripeptidyl 25.5 1.8E+02 0.0038 23.2 4.9 30 67-96 80-109 (139)
483 PF15297 CKAP2_C: Cytoskeleton 25.1 3.7E+02 0.0081 25.1 7.7 58 164-221 105-169 (353)
484 KOG4279 Serine/threonine prote 25.0 78 0.0017 32.7 3.5 124 62-206 200-334 (1226)
485 PF00637 Clathrin: Region in C 24.1 44 0.00095 26.1 1.4 55 158-217 41-95 (143)
486 PF15297 CKAP2_C: Cytoskeleton 24.1 5.7E+02 0.012 23.9 8.6 48 47-94 121-171 (353)
487 PF08626 TRAPPC9-Trs120: Trans 23.9 78 0.0017 34.6 3.6 35 160-194 243-277 (1185)
488 COG4259 Uncharacterized protei 23.8 1.9E+02 0.0041 22.0 4.5 37 159-195 72-108 (121)
489 COG3014 Uncharacterized protei 23.8 5.7E+02 0.012 24.0 8.5 28 161-188 127-154 (449)
490 KOG4056 Translocase of outer m 23.6 2.1E+02 0.0046 22.9 5.0 28 68-95 86-113 (143)
491 smart00299 CLH Clathrin heavy 23.4 3.5E+02 0.0075 20.8 12.5 49 72-123 16-64 (140)
492 PF08311 Mad3_BUB1_I: Mad3/BUB 23.3 3.6E+02 0.0077 20.9 9.6 82 43-126 40-126 (126)
493 KOG4563 Cell cycle-regulated h 22.8 1.4E+02 0.0031 28.0 4.5 55 32-86 44-106 (400)
494 TIGR00985 3a0801s04tom mitocho 21.3 2.2E+02 0.0048 23.0 4.9 32 163-194 94-126 (148)
495 KOG2062 26S proteasome regulat 20.7 6.5E+02 0.014 26.2 8.8 56 165-220 507-565 (929)
496 KOG2581 26S proteasome regulat 20.4 7.8E+02 0.017 23.7 10.4 65 66-132 212-280 (493)
497 PF10366 Vps39_1: Vacuolar sor 20.1 1.3E+02 0.0028 22.8 3.2 26 162-187 42-67 (108)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=4.5e-24 Score=200.80 Aligned_cols=231 Identities=21% Similarity=0.159 Sum_probs=162.9
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
|+=..+|.++|.++...+.++.|+.+|.+|+.+.|+++.++-|||.+|..+|..+-||..|++++++.|... ..+++|
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~--~Ay~Nl 326 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP--DAYNNL 326 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch--HHHhHH
Confidence 555567888888887778888888888888888888888888888888888888888888888888888642 456667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchh-hhhcCcchhHHhhhhh------h--HHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGK------K--FQVSVRQETSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~-~~~~~~~~~~~~~~~~------~--~~~~l~p~~~~~l~nLg~~y~~~g~~~ 176 (297)
+..+...|+..||.++|.++|.+.|.- .+.+ ++..+.+..+. . ..+++.|+.+.+++|||.+|.++|+++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~-NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMN-NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHH-HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 777788888888888888888887631 1111 11112222221 1 125778888899999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----------cchhhHHHHHHHHHHHHhc
Q 022442 177 AAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC----------EDGRTRKRAEELLLELESK 245 (297)
Q Consensus 177 eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~----------~~~~~~~~a~~~l~~~~~~ 245 (297)
+|+.+|+.||.++|+..+ +.|+|.+|-.+|+.++|+..|.+++..+|--. -+..+...|..-.+.....
T Consensus 406 ~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 406 DAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999988 88899999999999999999999888733100 0223334455555544443
Q ss_pred CC-CCchhhhhcccc
Q 022442 246 QP-PPDLSDLLGLNL 259 (297)
Q Consensus 246 ~~-~~~~~~~~~~~~ 259 (297)
.| -+++..++...+
T Consensus 486 kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCL 500 (966)
T ss_pred CCCCchhhhHHHHHH
Confidence 33 355555554443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-23 Score=196.58 Aligned_cols=199 Identities=18% Similarity=0.198 Sum_probs=169.3
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
|+..-++-+.+-++..+|+.+-||..|+++|.++|++++++.|||+.+...|+..||+..|.+++.++|.++ ...++|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha--dam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA--DAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH--HHHHHH
Confidence 333334444444577899999999999999999999999999999999999999999999999999999854 455669
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhh------H--HHhcCCCcHHHHHHHHHHHHHCCChHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK------F--QVSVRQETSRLLGNLAWAYMQKTNFMA 177 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~------~--~~~l~p~~~~~l~nLg~~y~~~g~~~e 177 (297)
|.+|.++|.+++|+.+|+++++..|.-++-.+++..+...+++. + .+.|+|.+++++.|+|.+|.++|+.++
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999999999999886544333333333333331 1 268999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442 178 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 226 (297)
Q Consensus 178 A~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~ 226 (297)
|+.+|.+|+.++|...+ +.|||.+|...|+..+|+..|+.++...|..+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 99999999999999999 99999999999999999999999999854333
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.5e-19 Score=179.50 Aligned_cols=214 Identities=14% Similarity=0.054 Sum_probs=164.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
.++...+.++...|++++|+..|++++..+|+...++..+|.++..+|++++|+..|++++..+|+++ .++..+|.+|
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~lg~~~ 409 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Confidence 35666677788889999999999999999999988999999999999999999999999999988753 4566688889
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
...|++++|+..|++++++.| ++..++.++|.++..+|++++|+..|++++...
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P--------------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDP--------------------------DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCc--------------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999888754 556678889999999999999999999999999
Q ss_pred CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---c--------------hhhHHHHHHHHHHHHhcCC-CCc
Q 022442 190 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE---D--------------GRTRKRAEELLLELESKQP-PPD 250 (297)
Q Consensus 190 P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~---~--------------~~~~~~a~~~l~~~~~~~~-~~~ 250 (297)
|+++. +.++|.++..+|++++|+..|++++...+.... . ...+..|...+.......| +..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 99988 888999999999999999999999887432111 0 2344556666665433333 333
Q ss_pred hhhhhcccc-----hhHHHHHHHHHH
Q 022442 251 LSDLLGLNL-----EDEFVNGLEEMV 271 (297)
Q Consensus 251 ~~~~~~~~~-----~d~~~~~~~~~l 271 (297)
+...+|..+ ++++++.|+..+
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344455544 355555565543
No 4
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.7e-18 Score=177.91 Aligned_cols=199 Identities=12% Similarity=0.042 Sum_probs=148.4
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442 20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE 99 (297)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~ 99 (297)
..+...|+ +......+.+....|++++|+..|++++...|.. ..++.+|.++.+.|++++|+..|++++..+|+..
T Consensus 501 ~Al~~~Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~-- 576 (987)
T PRK09782 501 QAEQRQPD-AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN-- 576 (987)
T ss_pred HHHHhCCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH--
Confidence 44555553 3333344555567888888888888877765554 4577888888888888888888888888888632
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh------hH--HHhcCCCcHHHHHHHHHHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK------KF--QVSVRQETSRLLGNLAWAYMQ 171 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~------~~--~~~l~p~~~~~l~nLg~~y~~ 171 (297)
.+...++..+...|++++|+..|++++++.|....+.+. .......++ .+ .+.++|+++.++.++|.++.+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~L-A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVAR-ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 333334545556688888888888888888753332210 011111111 11 157789999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442 172 KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI 223 (297)
Q Consensus 172 ~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~ 223 (297)
+|++++|+.+|++|++++|+++. +.+||.++..+|++++|+..|++++...|
T Consensus 656 ~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 656 SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998 99999999999999999999999999843
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=2.8e-18 Score=171.26 Aligned_cols=261 Identities=13% Similarity=0.083 Sum_probs=183.6
Q ss_pred cchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442 13 SKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG 91 (297)
Q Consensus 13 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~ 91 (297)
.....++ ..+...|.++.+...++...+..|++++|+..|++++..+|+++.++..+|.++.++|++++|++.|++++.
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444 555666777778888888888889999999999999999999998999999999999999999999999998
Q ss_pred hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hh-c-------Ccc-----------------------
Q 022442 92 LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AF-N-------GKP----------------------- 139 (297)
Q Consensus 92 ~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~-~-------~~~----------------------- 139 (297)
++|++. .....++.++...|++++|+..+++++...|... ++ . +..
T Consensus 139 l~P~~~--~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 216 (656)
T PRK15174 139 AFSGNS--QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAG 216 (656)
T ss_pred hCCCcH--HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHH
Confidence 888743 3555578888888888888888888877765321 11 0 000
Q ss_pred --hhHHhhhhh------hHH--HhcCCCcHHHHHHHHHHHHHCCChHH----HHHHHHHHHHhCCCcHH-HhHHHHHHHH
Q 022442 140 --TKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMA----AEVVYQKAQMIDPDANK-ACNLGLCLIK 204 (297)
Q Consensus 140 --~~~~~~~~~------~~~--~~l~p~~~~~l~nLg~~y~~~g~~~e----A~~~y~~Al~~~P~~~~-~~nLg~~l~~ 204 (297)
.......++ .+. +.+.|+++.++.+||.+|..+|++++ |+..|+++++++|++.. +.++|.++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 000000010 011 46778999999999999999999986 89999999999999988 8899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHHHHHHHhcCCC-Cchhhhhcccc-----hhHHHHHHH
Q 022442 205 RTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP-PDLSDLLGLNL-----EDEFVNGLE 268 (297)
Q Consensus 205 ~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~-----~d~~~~~~~ 268 (297)
+|++++|+..+++++...+..+. ....++.|...+..+....|. +......|..+ .++..+.|+
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999987433221 134455666666655443433 22121122222 466777777
Q ss_pred HHHhhcC
Q 022442 269 EMVRVWA 275 (297)
Q Consensus 269 ~~l~~~~ 275 (297)
..+...+
T Consensus 377 ~al~~~P 383 (656)
T PRK15174 377 HYIQARA 383 (656)
T ss_pred HHHHhCh
Confidence 6665443
No 6
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.2e-17 Score=142.78 Aligned_cols=167 Identities=22% Similarity=0.182 Sum_probs=150.1
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
...+...+..+...|++++|+..+++++..+|++..++..+|.++..+|++++|++.+++++...|.+. .....+|.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHH
Confidence 345777788888999999999999999999999999999999999999999999999999999999743 455668999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
|...|++++|+..+++++...+ .|.....+.++|.++...|++++|+..|.+++..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999997521 1223457889999999999999999999999999
Q ss_pred CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 189 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 189 ~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|+++. +..+|.++...|++++|...+++++..
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999988 889999999999999999999999986
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=4.9e-18 Score=166.62 Aligned_cols=180 Identities=14% Similarity=0.034 Sum_probs=149.5
Q ss_pred chhhhhhhhhcC-CCCCcHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHH
Q 022442 14 KKEDLFHVIHKV-PAGDGPYVRAKHAQL---------VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI 83 (297)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi 83 (297)
...+.|...... |....++..++.++. ..+++++|+..++++++++|+++.++..+|.++..+|++++|+
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~ 358 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS 358 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 344556444444 555556665555433 2355899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 163 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~ 163 (297)
..|+++++++|+++ ..++.+|.+|...|++++|+..++++++++| +++.++.
T Consensus 359 ~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P--------------------------~~~~~~~ 410 (553)
T PRK12370 359 LLFKQANLLSPISA--DIKYYYGWNLFMAGQLEEALQTINECLKLDP--------------------------TRAAAGI 410 (553)
T ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--------------------------CChhhHH
Confidence 99999999999854 3556689999999999999999999999865 3444556
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhC-CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMID-PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~-P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.++.++...|++++|+..+++++... |+++. +.++|.+|..+|++++|...+++++..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 67777888999999999999999885 77887 889999999999999999999998775
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1e-17 Score=166.44 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=64.3
Q ss_pred cccccchhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 9 KIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS 88 (297)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~ 88 (297)
++.-...-..|....++.+++..+.+.+.+++..|++++|+..+.++++++|++..+++.+|.++..+|++++|+..|..
T Consensus 140 ~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444556667555555445566777888888999999999999999999999999999999999999999999875544
Q ss_pred H
Q 022442 89 F 89 (297)
Q Consensus 89 a 89 (297)
+
T Consensus 220 ~ 220 (615)
T TIGR00990 220 S 220 (615)
T ss_pred H
Confidence 3
No 9
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=4e-17 Score=138.47 Aligned_cols=164 Identities=22% Similarity=0.136 Sum_probs=150.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
...++.-++..||+..|...+++||+.+|+...+|..++.+|..+|..+-|-+.|++++.++|++. .+.|+.|.-+..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHHHHh
Confidence 445566788999999999999999999999999999999999999999999999999999999853 577778999999
Q ss_pred cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~ 191 (297)
+|++++|...|++|+.. |. -|..++++-|+|+|-.+.|+++.|.+.|+++|+++|+
T Consensus 116 qg~~~eA~q~F~~Al~~-P~-----------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PA-----------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred CCChHHHHHHHHHHHhC-CC-----------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 99999999999999985 30 1345678999999999999999999999999999999
Q ss_pred cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 192 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 192 ~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++. ...++....+.|++-.|...+++....
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 998 999999999999999999999998875
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=4.1e-17 Score=162.93 Aligned_cols=201 Identities=14% Similarity=0.038 Sum_probs=130.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442 38 AQLVQKDPEAAIVLFWKAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 116 (297)
Q Consensus 38 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~ 116 (297)
.++..|++++|+..++++++.+|. .......++.++..+|++++|+..+++++..+|++. .....+|.+|...|+++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~--~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA--ALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCch
Confidence 355667777777777776666542 233334456666777777777777777777776632 34444667777777776
Q ss_pred H----HHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhH--HHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 117 E----QIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKF--QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 117 e----Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~--~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
+ |+..|++++++.|................+ ..+ .+.+.|+++.++.++|.+|.++|++++|+..|++
T Consensus 264 eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 677777777766542211000000000000 001 1355678888999999999999999999999999
Q ss_pred HHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442 185 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL 242 (297)
Q Consensus 185 Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~ 242 (297)
++..+|++.. ...+|.++...|++++|+..|++++...+... +..++.+...+...
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~--~~~~~ea~~~~~~~ 400 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL--PQSFEEGLLALDGQ 400 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--hhhHHHHHHHHHHH
Confidence 9999999887 66679999999999999999999998733222 33344455555544
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=5.5e-17 Score=147.27 Aligned_cols=200 Identities=10% Similarity=-0.064 Sum_probs=147.8
Q ss_pred hhhhhcCCCCCc----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442 19 FHVIHKVPAGDG----PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 19 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P 94 (297)
..++.+.+.++. .++..+.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++++|
T Consensus 50 ~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P 129 (296)
T PRK11189 50 NQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP 129 (296)
T ss_pred HHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 366655543333 4777888888999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc--CcchhHHhhhhh---hHHHhcCCCcHHHHHHHHHHH
Q 022442 95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN--GKPTKTARSHGK---KFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~--~~~~~~~~~~~~---~~~~~l~p~~~~~l~nLg~~y 169 (297)
++. ..+..+|.++...|++++|+..+++++++.|...... ............ .+...+...++..+. .+.++
T Consensus 130 ~~~--~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~ 206 (296)
T PRK11189 130 TYN--YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVE 206 (296)
T ss_pred CCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHH
Confidence 853 3455689999999999999999999999988543110 000000000011 111112222222332 46777
Q ss_pred HHCCChHHHHHHHHHH-------HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 170 MQKTNFMAAEVVYQKA-------QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~A-------l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
..+|++.++ ..+..+ ++++|+... +++||.++..+|++++|+.+|++++..+
T Consensus 207 ~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 207 FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 778887654 233333 366777777 9999999999999999999999999983
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=8.4e-17 Score=165.55 Aligned_cols=250 Identities=13% Similarity=0.063 Sum_probs=185.1
Q ss_pred hhhhcCCC--CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch
Q 022442 20 HVIHKVPA--GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 97 (297)
Q Consensus 20 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~ 97 (297)
+.+..+|+ ...++..++.++.. +++++|+..|.+++...|+.. ....+|.++.+.|++++|+..|+++....|..
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~- 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN- 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-
Confidence 44445565 55678888888875 899999999999999999865 46667888889999999999999988776653
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH---hhhhh---hHH--HhcCCCcHHHHHHHHHHH
Q 022442 98 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA---RSHGK---KFQ--VSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 98 ~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~---~~~~~---~~~--~~l~p~~~~~l~nLg~~y 169 (297)
.. ...+|.++.+.|++++|+.+|++++++.|............. ..... .+. +.++|+ +.++.++|.++
T Consensus 543 -~a-~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 543 -ED-LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred -HH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 22 345788899999999999999999998764321110000000 01111 111 577897 89999999999
Q ss_pred HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHH
Q 022442 170 MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEEL 238 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~ 238 (297)
.++|++++|+.+|++++.++|+++. +.++|.++...|++++|+.+|++++...|.++. ....++.|...
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999998443322 23445567777
Q ss_pred HHHHHhcCC-CCchhhhhcccc--hhHHHHHHHHHHhhcC
Q 022442 239 LLELESKQP-PPDLSDLLGLNL--EDEFVNGLEEMVRVWA 275 (297)
Q Consensus 239 l~~~~~~~~-~~~~~~~~~~~~--~d~~~~~~~~~l~~~~ 275 (297)
++......| .+...+.+|... ..+|-...+.+-.+|.
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 766644444 577788788766 2334444444444443
No 13
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1.9e-17 Score=162.49 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG 113 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~---------g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g 113 (297)
+++++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+++ ..+..+|.++...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--QALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcc
Confidence 4578999999999999999999999999887644 348999999999999999864 45566899999999
Q ss_pred CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
++++|+..|+++++++ |+++.+++++|.+|..+|++++|+.+|+++++++|+++
T Consensus 353 ~~~~A~~~~~~Al~l~--------------------------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 353 EYIVGSLLFKQANLLS--------------------------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred CHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999985 46778999999999999999999999999999999998
Q ss_pred H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----------chhhHHHHHHHHHHHHhcCCC
Q 022442 194 K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE-----------DGRTRKRAEELLLELESKQPP 248 (297)
Q Consensus 194 ~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~-----------~~~~~~~a~~~l~~~~~~~~~ 248 (297)
. ...++.++...|++++|+..+++++...+++.+ ...+.+.|...+..+....+.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 7 666777788899999999999999875322222 134556777777776555444
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=1.5e-16 Score=168.24 Aligned_cols=235 Identities=15% Similarity=0.130 Sum_probs=179.0
Q ss_pred cccccchhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH---------------
Q 022442 9 KIFSSKKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVV--------------- 72 (297)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~--------------- 72 (297)
++...+....|..+... |....++..++.++...|++++|+.+|+++++.+|++..++..++.+
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 33445556667545444 65666788888999999999999999999999999988877665554
Q ss_pred ---------------------------HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022442 73 ---------------------------MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRK 125 (297)
Q Consensus 73 ---------------------------l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~a 125 (297)
+...|++++|++.|+++++++|++. .+...++.+|.+.|++++|+..++++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~--~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV--WLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4467999999999999999999854 35566899999999999999999999
Q ss_pred HHhhchhhh--hc--------Ccchh-------------------H---------------Hhhhhh---h-HHHhcCCC
Q 022442 126 LRLIYQGEA--FN--------GKPTK-------------------T---------------ARSHGK---K-FQVSVRQE 157 (297)
Q Consensus 126 l~~~p~~~~--~~--------~~~~~-------------------~---------------~~~~~~---~-~~~~l~p~ 157 (297)
+++.|.... +. +.... + ....++ . -.+...|+
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 998774321 10 00000 0 000000 0 01345788
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---------
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE--------- 227 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~--------- 227 (297)
++.++.+||.+|.++|++++|+.+|+++++.+|+++. +.+++.+|...|++++|+..+++++...+..+.
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 999999999999999999999999876332221
Q ss_pred -chhhHHHHHHHHHHHHhc
Q 022442 228 -DGRTRKRAEELLLELESK 245 (297)
Q Consensus 228 -~~~~~~~a~~~l~~~~~~ 245 (297)
...+.++|...+..+...
T Consensus 682 ~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhh
Confidence 234556677777776543
No 15
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=8.5e-18 Score=160.11 Aligned_cols=168 Identities=20% Similarity=0.164 Sum_probs=125.9
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
|..+.+.=.+|.++..++|++.|+++|++|++++|++..++..+|.=+..+..+|.|...|+.++..+|++. ..++-|
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--nAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--NAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--HHHHhh
Confidence 555556656677777788888888888888888888888888888888888888888888888888888742 333347
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
|.+|.++++++.|.-.|++|++++| .+..++..+|.++.++|+.++|+.+|++|
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP--------------------------~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINP--------------------------SNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCc--------------------------cchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 7788888888888888888887755 23345667777777777777777777777
Q ss_pred HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.++|.++- .++.|.++..++++++|+..++++-+.
T Consensus 550 ~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 550 IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 777777776 777777777777777777777777766
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=2.3e-16 Score=159.99 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=102.7
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-------
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ------- 98 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~------- 98 (297)
|.+...+...+.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3344445555555555566666666666666666666666666666666666666666666666655554211
Q ss_pred -------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh-----
Q 022442 99 -------------------------ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK----- 148 (297)
Q Consensus 99 -------------------------~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~----- 148 (297)
......+|.++...|++++|+..|++++...|....+.. ........++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAV 756 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHH-HHHHHHHCCCHHHHH
Confidence 112233455555555555555555555555443211100 0000000000
Q ss_pred -hHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 149 -KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 149 -~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+. +...|+++.+++++|.+|..+|++++|+.+|+++++.+|+++. +.++|.++...|+ .+|+.++++++..
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 010 2445666666666666666666666666666666666666665 5566666666666 5566666666654
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=3.7e-16 Score=158.48 Aligned_cols=198 Identities=18% Similarity=0.115 Sum_probs=154.5
Q ss_pred hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442 23 HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD 102 (297)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~ 102 (297)
...|+....+...+.++...|++++|+.+|+++++.+|++..++.++|.++...|++++|+..|++++...|.+. ...
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 536 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL--RAI 536 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHH
Confidence 334556667777888888899999999999999999999999999999999999999999999999999998743 455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh------hHH--HhcCCCcHHHHHHHHHHHHHCCC
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTN 174 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~l~nLg~~y~~~g~ 174 (297)
..++.++...|++++|+..++++++..|................++ .+. +...|+++.++..+|.+|...|+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 5678889999999999999999988876432110000000000010 111 35567888888999999999999
Q ss_pred hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 175 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 175 ~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
+++|+.+|+++++.+|+++. +..+|.++...|++++|+.+|++++...
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998887 8888999999999999999999888763
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=4.1e-16 Score=145.84 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=48.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--hHHHHHHHHHHHHHHcC
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCG 113 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~~~~l~~~L~~ly~~~g 113 (297)
+..+...|++++|+..|++++..+|++..++..+|.++..+|++++|+..+++++...+.. ........+|.+|...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3444455555555555555555555555555555555555555555555555555432211 01122334555555555
Q ss_pred CHHHHHHHHHHHHHhh
Q 022442 114 KVEEQIEMLKRKLRLI 129 (297)
Q Consensus 114 ~~~eAi~~~~~al~~~ 129 (297)
++++|+..|+++++..
T Consensus 122 ~~~~A~~~~~~~l~~~ 137 (389)
T PRK11788 122 LLDRAEELFLQLVDEG 137 (389)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 5555555555555543
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=3.5e-17 Score=133.03 Aligned_cols=127 Identities=8% Similarity=-0.103 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
-..+|+++++++|++ +..+|.++.+.|++++|+..|++++.++|.+. ..+..+|.++...|++++|+..|+++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 357899999999886 56789999999999999999999999999853 4566689999999999999999999998
Q ss_pred hhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442 128 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 205 (297)
Q Consensus 128 ~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~ 205 (297)
++ |+++.+++++|.++..+|++++|+..|++|+++.|+++. +.++|.+....
T Consensus 87 l~--------------------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 LD--------------------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cC--------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 75 467789999999999999999999999999999999998 77888776543
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=4.2e-16 Score=133.24 Aligned_cols=181 Identities=12% Similarity=0.001 Sum_probs=152.8
Q ss_pred hhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442 15 KEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC 93 (297)
Q Consensus 15 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~ 93 (297)
..+.|. .+...|....++...+.++...|++++|+..|++++..+|.+..++.++|.++..+|++++|+..+++++...
T Consensus 50 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 334443 3344466666777788899999999999999999999999999999999999999999999999999999864
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442 94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g 173 (297)
+..........+|.++...|++++|+..+++++...| +++.++..+|.++...|
T Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 130 LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--------------------------QRPESLLELAELYYLRG 183 (234)
T ss_pred ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------------CChHHHHHHHHHHHHcC
Confidence 3211223455589999999999999999999998754 34567889999999999
Q ss_pred ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++|+.++++++...|+++. +..++.++...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999998887 778899999999999999988876653
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.1e-17 Score=157.45 Aligned_cols=170 Identities=16% Similarity=0.145 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
.|++|-.+|+++.-|++++.||+.|++++.++|+++ -.+.++|.=+.....+|.|..+|++||..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa--YayTLlGhE~~~~ee~d~a~~~fr~Al~~------------- 484 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA--YAYTLLGHESIATEEFDKAMKSFRKALGV------------- 484 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc--hhhhhcCChhhhhHHHHhHHHHHHhhhcC-------------
Confidence 345555555555555555555555555555555432 13333444445555555555555555554
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
+|.+-++|+.||.+|.++++++.|+-+|++|++++|.+.. .+.+|..+.++|+.++|+.+|++|+.
T Consensus 485 -------------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 485 -------------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred -------------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999998 89999999999999999999999998
Q ss_pred cCCCCCc----------chhhHHHHHHHHHHHHhcCCC-Cchhhhhcccc
Q 022442 221 GRIPGCE----------DGRTRKRAEELLLELESKQPP-PDLSDLLGLNL 259 (297)
Q Consensus 221 ~~~~~~~----------~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~ 259 (297)
..+.++- -...++.|...|++++...|+ +....-+|.++
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 7443332 245567788888888766654 44445555554
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=3.8e-16 Score=165.15 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=141.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH------------HHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE------------SLDN 103 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~------------~l~~ 103 (297)
+..++..|++++|+..|+++++.+|++++++..||.++.++|++++|+..|+++++.+|+.... ....
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5667789999999999999999999999999999999999999999999999999999964211 1123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHHHHHHH------
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAY------ 169 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~nLg~~y------ 169 (297)
.+|.++...|++++|+..|++++++.|........+..+....+ ..+. +.++|++..++.+++.+|
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 45788899999999999999999997743211100011111111 1121 466788887777666554
Q ss_pred ------------------------------------HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHH
Q 022442 170 ------------------------------------MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 170 ------------------------------------~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~ 212 (297)
...|++++|+.+|+++++++|+++. +++||.+|..+|++++|+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3468888888888888888888887 778888888888888888
Q ss_pred HHHHHHHhc
Q 022442 213 SVLEDVLYG 221 (297)
Q Consensus 213 ~~~~~al~~ 221 (297)
..+++++..
T Consensus 516 ~~l~~al~~ 524 (1157)
T PRK11447 516 ALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHc
Confidence 888888875
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=8e-16 Score=143.85 Aligned_cols=234 Identities=17% Similarity=0.117 Sum_probs=171.4
Q ss_pred ccchhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHCCChHHHHHHH
Q 022442 12 SSKKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAI 86 (297)
Q Consensus 12 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~l~~~g~~~eAi~~~ 86 (297)
..+..+.|..+.+. |+...++...+.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 130 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELF 130 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34466677666555 5555578888888899999999999999988864332 356889999999999999999999
Q ss_pred HHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-----hcCcchhHHhhhh------hhHH--Hh
Q 022442 87 KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-----FNGKPTKTARSHG------KKFQ--VS 153 (297)
Q Consensus 87 ~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-----~~~~~~~~~~~~~------~~~~--~~ 153 (297)
++++...|.. ......++.++...|++++|++.++++++..|.... +...........+ ..+. +.
T Consensus 131 ~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 131 LQLVDEGDFA--EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHcCCcch--HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 9999988863 345666889999999999999999999987653210 1000000000001 1111 35
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----
Q 022442 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE---- 227 (297)
Q Consensus 154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~---- 227 (297)
+.|++..++..+|.+|...|++++|+..|+++++.+|++. . +..|+.+|...|++++|+..+++++...+....
T Consensus 209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~l 288 (389)
T PRK11788 209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLAL 288 (389)
T ss_pred HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 6788888999999999999999999999999999999875 3 678999999999999999999999886322111
Q ss_pred -----chhhHHHHHHHHHHHHhcCC
Q 022442 228 -----DGRTRKRAEELLLELESKQP 247 (297)
Q Consensus 228 -----~~~~~~~a~~~l~~~~~~~~ 247 (297)
.....+.|...+...-...|
T Consensus 289 a~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 289 AQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 13345566666665543333
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.3e-16 Score=142.65 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=142.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442 38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
.+...++.++|+.+|++|+++||+...+|..+|.-|..+.+...||+.|+++++++|.|. ..++-||..|.-++-+.=
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy--RAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY--RAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH--HHHhhhhHHHHHhcchHH
Confidence 355678999999999999999999999999999999999999999999999999999853 233448999999999999
Q ss_pred HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-Hh
Q 022442 118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 196 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~ 196 (297)
|+-.|++|++. +|+++++|..||.||.++++.++|+.||++|+...-.+.. ..
T Consensus 417 aLyYfqkA~~~--------------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 417 ALYYFQKALEL--------------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred HHHHHHHHHhc--------------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 99999999987 4578889999999999999999999999999999888777 88
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 197 NLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 197 nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.||.+|.++++..+|..+|++-++.
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999998874
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=4.1e-16 Score=141.52 Aligned_cols=189 Identities=13% Similarity=0.020 Sum_probs=140.6
Q ss_pred chhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 14 KKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 14 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
.....|+ .+..-|+...++...+.++...|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.
T Consensus 82 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 82 LARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445564 444457777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-------CcchhHHhhhhhh---H--HHhcCCCcHH
Q 022442 93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-------GKPTKTARSHGKK---F--QVSVRQETSR 160 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-------~~~~~~~~~~~~~---~--~~~l~p~~~~ 160 (297)
+|+++...++ ..++...+++++|+..+++++...++..+.. +.... ....... + ...+.|+.+.
T Consensus 162 ~P~~~~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~~~~~~~~~~l~~~~~e 237 (296)
T PRK11189 162 DPNDPYRALW---LYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISE-ETLMERLKAGATDNTELAERLCE 237 (296)
T ss_pred CCCCHHHHHH---HHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCH-HHHHHHHHhcCCCcHHHHHHHHH
Confidence 9986432222 2344677899999999988776544332211 11110 0000000 0 1245677788
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CcHH-HhHHHHHHHHcC
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANK-ACNLGLCLIKRT 206 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-~~~~-~~nLg~~l~~~g 206 (297)
++++||.+|.++|++++|+.+|++|++++| ++.. .+.+..+....+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 6665 555544443333
No 26
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=4.1e-16 Score=146.74 Aligned_cols=204 Identities=17% Similarity=0.191 Sum_probs=157.5
Q ss_pred hhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442 15 KEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P 94 (297)
+...|+..-..-+.+.||..+.. ++..|++.+|+-+|+.|++.+|.+.++|..||++....++-..||.+++++++++|
T Consensus 272 ~~Y~F~e~Np~~~~pdPf~eG~~-lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP 350 (579)
T KOG1125|consen 272 KGYQFSEENPYIDHPDPFKEGCN-LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP 350 (579)
T ss_pred ccceecccCcccCCCChHHHHHH-HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence 45566666666677788866554 45799999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------------Hhhch--
Q 022442 95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL-----------------------------------------RLIYQ-- 131 (297)
Q Consensus 95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al-----------------------------------------~~~p~-- 131 (297)
++ ..+...|+..|...|.-.+|+.++.+-| ...|.
T Consensus 351 ~N--leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 351 TN--LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred cc--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 84 3455557777777777666655555442 23331
Q ss_pred h-hhhc--CcchhHHhhh---hhhHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442 132 G-EAFN--GKPTKTARSH---GKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 202 (297)
Q Consensus 132 ~-~~~~--~~~~~~~~~~---~~~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l 202 (297)
+ .... |.+..+-+.. .+.|. +.++|++..+|+.||..+....+..||+..|++||++.|.... ++|||+++
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 1 1111 1111111111 12232 6788999999999999999999999999999999999999998 99999999
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 022442 203 IKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 203 ~~~g~~~eA~~~~~~al~~ 221 (297)
+.+|.|+||..+|-.||..
T Consensus 509 mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999976
No 27
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=8e-15 Score=138.11 Aligned_cols=155 Identities=19% Similarity=0.093 Sum_probs=123.9
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-h-------h-c-
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-A-------F-N- 136 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~-------~-~- 136 (297)
+..|..+++.|..-+|+-+|+.++..+|.++ ..+..||.+....++-..||.++++++++.|.+. + | |
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha--eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA--EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH--HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 4679999999999999999999999999854 3445589999999999999999999999988421 1 0 0
Q ss_pred Cc-------chhHHhhh-----------------------hh-------hHH--HhcCC--CcHHHHHHHHHHHHHCCCh
Q 022442 137 GK-------PTKTARSH-----------------------GK-------KFQ--VSVRQ--ETSRLLGNLAWAYMQKTNF 175 (297)
Q Consensus 137 ~~-------~~~~~~~~-----------------------~~-------~~~--~~l~p--~~~~~l~nLg~~y~~~g~~ 175 (297)
+. +.+..+.+ .. .|. ....| .++++...||.+|.-.|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 00 00000000 00 011 13345 6788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442 176 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI 223 (297)
Q Consensus 176 ~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~ 223 (297)
+.|+.||+.||..+|++.. |..||..+..-.+.+||+..|++++++.|
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 9999999999999999999 99999999999999999999999999843
No 28
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1.9e-15 Score=122.83 Aligned_cols=128 Identities=14% Similarity=0.088 Sum_probs=106.9
Q ss_pred HHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442 83 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL 162 (297)
Q Consensus 83 i~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l 162 (297)
...|+++++++|++ +. .+|.++...|++++|+..|++++.+. |++..++
T Consensus 13 ~~~~~~al~~~p~~----~~-~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~ 61 (144)
T PRK15359 13 EDILKQLLSVDPET----VY-ASGYASWQEGDYSRAVIDFSWLVMAQ--------------------------PWSWRAH 61 (144)
T ss_pred HHHHHHHHHcCHHH----HH-HHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCcHHHH
Confidence 35788999999973 22 36888899999999999999999875 4577899
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE 241 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~ 241 (297)
.++|.++..+|++++|+.+|++++.++|+++. ++++|.++..+|++++|+..|++++...+.++.-......+...+..
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999844343333444444444443
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=6.3e-16 Score=138.94 Aligned_cols=206 Identities=19% Similarity=0.188 Sum_probs=89.5
Q ss_pred chhhhhhhhhcCC-CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 14 KKEDLFHVIHKVP-AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
....+|..+...+ ..+..+.++..+ +..+++++|+..++++++..+ ++..+..+..++...|+++++...++.+...
T Consensus 62 ~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 139 (280)
T PF13429_consen 62 EAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEEL 139 (280)
T ss_dssp ----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3445565554443 334456666666 678999999999988887654 4566777788888999999999999887765
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHH
Q 022442 93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGN 164 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~n 164 (297)
.+......+...+|.++.+.|++++|+.+|++++++.|.+..............+ ..+. ....|+++..+..
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA 219 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4211123455668889999999999999999999998854321100000000000 0111 1223677778899
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|.+|..+|++++|+.+|++++..+|+++. ..++|.++...|+.++|..++++++..
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998 889999999999999999999998763
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.67 E-value=1.1e-14 Score=147.99 Aligned_cols=182 Identities=11% Similarity=0.049 Sum_probs=126.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch--HHHHHHHHHHHHHHcCCHH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--QESLDNVLIDLYKKCGKVE 116 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~--~~~l~~~L~~ly~~~g~~~ 116 (297)
+..|++++|+..|+++++.+|..+ .+...+|.++..+|++++|+..|++++...|.+. .......|+.++.+.|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 456777778877877777654322 2344467777777888888887777777666431 0122333555667777888
Q ss_pred HHHHHHHHHHHhhchh-------------hhhc--CcchhHHhhhhh------hHH--HhcCCCcHHHHHHHHHHHHHCC
Q 022442 117 EQIEMLKRKLRLIYQG-------------EAFN--GKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 117 eAi~~~~~al~~~p~~-------------~~~~--~~~~~~~~~~~~------~~~--~~l~p~~~~~l~nLg~~y~~~g 173 (297)
+|+..+++++...|+. .... ..........++ .+. +...|+++.++.++|.++...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 8887777777765421 0000 000000000000 111 3556888999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++|+..++++++++|++.. .+.+|.++..+|++++|...+++++..
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999998 889999999999999999999999997
No 31
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=1.1e-14 Score=127.40 Aligned_cols=185 Identities=15% Similarity=0.035 Sum_probs=145.9
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHH
Q 022442 28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD---SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDN 103 (297)
Q Consensus 28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~ 103 (297)
....++..+..++..|++++|+..|++++..+|+++ .++..+|.++.++|++++|+..|++++...|++... ...+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344677788888899999999999999999999865 688999999999999999999999999999974321 2345
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442 104 VLIDLYKKC--------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF 175 (297)
Q Consensus 104 ~L~~ly~~~--------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~ 175 (297)
.+|.++... |++++|+..|+++++..|............. .+.........++|.+|..+|++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~---------~~~~~~~~~~~~~a~~~~~~g~~ 182 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD---------YLRNRLAGKELYVARFYLKRGAY 182 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHcCCh
Confidence 578888876 8999999999999999774321100000000 00011123446899999999999
Q ss_pred HHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 176 MAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 176 ~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+|+..|++++...|+++ . ++++|.++..+|++++|..+++.+...
T Consensus 183 ~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 183 VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999988754 5 889999999999999999998887764
No 32
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.66 E-value=1.2e-14 Score=144.62 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
+++.-.....+..|.+++++.+||.+..++|++++|...++.++.++|++. .....++.++.+++++++|...+++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--EAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 344444444556788999999999999999999999999999999999854 344557889999999999999999999
Q ss_pred HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442 127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 205 (297)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~ 205 (297)
... |+++.+++.+|.++.++|++++|+.+|++++..+|+++. +.++|.++...
T Consensus 148 ~~~--------------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 148 SGG--------------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR 201 (694)
T ss_pred hcC--------------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 874 567889999999999999999999999999999999998 99999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 022442 206 TRYNEARSVLEDVLYG 221 (297)
Q Consensus 206 g~~~eA~~~~~~al~~ 221 (297)
|+.++|...|+++++.
T Consensus 202 G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 202 GALWRARDVLQAGLDA 217 (694)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999986
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.6e-14 Score=133.04 Aligned_cols=157 Identities=20% Similarity=0.145 Sum_probs=136.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChHH---HHHH-------------------------------HHHHHHHCCChHHH
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVDS---ALKD-------------------------------MAVVMKQLDRSEEA 82 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~-------------------------------Lg~~l~~~g~~~eA 82 (297)
.+.....|+++|+..|+...+.+|-..+ .+.| +|+-|...+++++|
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence 3455788999999999999998885211 1111 56777888899999
Q ss_pred HHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442 83 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL 162 (297)
Q Consensus 83 i~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l 162 (297)
+..|+++++++|+ ...++.+.|.=|..+++...|++.|++|++++| .+-++|
T Consensus 350 v~YFkRALkLNp~--~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p--------------------------~DyRAW 401 (559)
T KOG1155|consen 350 VMYFKRALKLNPK--YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP--------------------------RDYRAW 401 (559)
T ss_pred HHHHHHHHhcCcc--hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--------------------------hhHHHH
Confidence 9999999999998 345666789999999999999999999999876 345799
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.||.+|.-++.+.=|+-+|++|+++.|++.. |..||.||.++++.++|+..|.+++..
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 999999999999999999999999986
No 34
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.65 E-value=1.8e-14 Score=137.81 Aligned_cols=173 Identities=24% Similarity=0.210 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Ccc-
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ- 96 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~- 96 (297)
+...+...+..+|+++.|+.+++.|++. .|.....+..+|.+|..++++.+|+.+|++++.+- +++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5555677788999999999999999997 67777778889999999999999999999987652 332
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442 97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~ 176 (297)
......+.|+.+|...|+++||..++++|+++... ... ...|+-+..+.+++.++..+++++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~---------~~~---------~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK---------LLG---------ASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH---------hhc---------cChHHHHHHHHHHHHHHHHhcchh
Confidence 22345577999999999999999999999999531 000 111234567899999999999999
Q ss_pred HHHHHHHHHHHhC-----CCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 177 AAEVVYQKAQMID-----PDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 177 eA~~~y~~Al~~~-----P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|+.+|++++++. ++++ . ..|||.+|.++|+++||..+|++++..
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 9999999999863 4552 3 579999999999999999999999976
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-14 Score=135.41 Aligned_cols=199 Identities=17% Similarity=0.106 Sum_probs=163.2
Q ss_pred hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHH
Q 022442 21 VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES 100 (297)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~ 100 (297)
.+...|+...+.+..|-.++.-|+..+|..+|-|+..++|....+|...|..+...|..++|+.+|..|.++.|.-.. .
T Consensus 304 LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P 382 (611)
T KOG1173|consen 304 LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-P 382 (611)
T ss_pred HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-h
Confidence 344558888899999988888999999999999999999999999999999999999999999999999999997322 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh-c--Ccc---hhHHhhhhhhHH------HhcC---CCcHHHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF-N--GKP---TKTARSHGKKFQ------VSVR---QETSRLLGNL 165 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~-~--~~~---~~~~~~~~~~~~------~~l~---p~~~~~l~nL 165 (297)
. ..+|.-|.+.++++-|...|.+|+.+.|.+... + |-. .+........|+ .++. +-+..+++||
T Consensus 383 ~-LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 383 S-LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred H-HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 2 337888999999999999999999999865322 1 100 000000001111 0111 2356679999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|.+|..++++++|+.+|+++|.+.|.++. +..+|.+|..+|+++.|++.|.++|..
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999999999999998 899999999999999999999999998
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=3.5e-14 Score=121.48 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=123.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 115 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~ 115 (297)
...|+.-|+++....+.++.. +|.. -+...++.++++..+++++..+|++. ..+..||.+|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCH
Confidence 345678899888766653221 2221 12236788999999999999999864 4556689999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH-HHCCC--hHHHHHHHHHHHHhCCCc
Q 022442 116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTN--FMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y-~~~g~--~~eA~~~y~~Al~~~P~~ 192 (297)
++|+.+|++++++. |+++.++.++|.++ ...|+ +++|..+++++++++|++
T Consensus 90 ~~A~~a~~~Al~l~--------------------------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~ 143 (198)
T PRK10370 90 DNALLAYRQALQLR--------------------------GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence 99999999999984 46778999999975 77788 599999999999999999
Q ss_pred HH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442 193 NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 226 (297)
Q Consensus 193 ~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~ 226 (297)
+. +.+||.++..+|++++|+..|+++++..+++.
T Consensus 144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 98 99999999999999999999999999844433
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.64 E-value=8.5e-15 Score=125.26 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=112.7
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH-HHHcCC--HHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGK--VEEQ 118 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l-y~~~g~--~~eA 118 (297)
.++.++++..++++++.+|++.++|..||.++...|++++|+.+|++++.+.|++. .+...+|.+ +...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCcHHH
Confidence 56778999999999999999999999999999999999999999999999999854 455557875 578888 5999
Q ss_pred HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
+.++++++++. |+++.++++||.++.++|++++|+.+|+++++++|.+..
T Consensus 130 ~~~l~~al~~d--------------------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD--------------------------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhC--------------------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999985 467789999999999999999999999999999998765
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=5.4e-14 Score=133.26 Aligned_cols=207 Identities=14% Similarity=0.069 Sum_probs=156.3
Q ss_pred hhhhhhhhhc-CCCCCc-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 15 KEDLFHVIHK-VPAGDG-PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 15 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
..+.+....+ .|.+.. .......+++..|+++.|...+++.++..|+++.++..++.++.++|++++|++.++...+.
T Consensus 137 A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 137 ANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3344444444 344432 33334778889999999999999999999999999999999999999999999877765543
Q ss_pred C--------------------------------------Ccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442 93 C--------------------------------------SKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 132 (297)
Q Consensus 93 ~--------------------------------------P~~--~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~ 132 (297)
. |.. ....+...++.++...|++++|+..++++++..|++
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 2 210 012344456788999999999999999999998865
Q ss_pred hh-----hc--Ccch-hHHhhhhhhH--HHhcCCCcH--HHHHHHHHHHHHCCChHHHHHHHH--HHHHhCCCcHHHhHH
Q 022442 133 EA-----FN--GKPT-KTARSHGKKF--QVSVRQETS--RLLGNLAWAYMQKTNFMAAEVVYQ--KAQMIDPDANKACNL 198 (297)
Q Consensus 133 ~~-----~~--~~~~-~~~~~~~~~~--~~~l~p~~~--~~l~nLg~~y~~~g~~~eA~~~y~--~Al~~~P~~~~~~nL 198 (297)
.. +. .... .........+ .+...|+++ .++..+|+++.++|++++|.++|+ ++++.+|++.....|
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 41 11 0000 0000001112 157789999 899999999999999999999999 688899999886699
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q 022442 199 GLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 199 g~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|.++.++|+.++|..+|++++..
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.61 E-value=5.2e-14 Score=119.66 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
..+...||.-|.++|++..|..-++++++.+|+.. ..+..++.+|.+.|..+.|-+.|++|+.+.|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p------------ 100 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSLAP------------ 100 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC------------
Confidence 35677899999999999999999999999999843 4556689999999999999999999999854
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC---cHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD---ANK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~---~~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
++.++++|.|+.+..+|+|++|...|++|+. +|. ... +.|+|.|-.++|+++.|...|+++
T Consensus 101 --------------~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 101 --------------NNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred --------------CccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 5667999999999999999999999999997 454 445 889999999999999999999999
Q ss_pred HhcCCCC
Q 022442 219 LYGRIPG 225 (297)
Q Consensus 219 l~~~~~~ 225 (297)
+...+..
T Consensus 166 L~~dp~~ 172 (250)
T COG3063 166 LELDPQF 172 (250)
T ss_pred HHhCcCC
Confidence 9984433
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=8.7e-15 Score=131.54 Aligned_cols=226 Identities=22% Similarity=0.193 Sum_probs=91.3
Q ss_pred hhhhhhh----hcC-CCCCcHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 16 EDLFHVI----HKV-PAGDGPYVR-AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF 89 (297)
Q Consensus 16 ~~~~~~~----~~~-~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a 89 (297)
++++.++ .+. |+++..|++ .+.++...|+++.|+..|++.+..++..+..+..++.+ ...+++++|+..+++.
T Consensus 25 ~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~ 103 (280)
T PF13429_consen 25 EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKA 103 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 3445555 344 455556655 45677889999999999999999999999999899888 7999999999999988
Q ss_pred HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442 90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y 169 (297)
.+..++ . ......+.++...|+++++...++++....+ .|+++..+..+|.++
T Consensus 104 ~~~~~~--~-~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 104 YERDGD--P-RYLLSALQLYYRLGDYDEAEELLEKLEELPA------------------------APDSARFWLALAEIY 156 (280)
T ss_dssp -----------------H-HHHTT-HHHHHHHHHHHHH-T---------------------------T-HHHHHHHHHHH
T ss_pred cccccc--c-chhhHHHHHHHHHhHHHHHHHHHHHHHhccC------------------------CCCCHHHHHHHHHHH
Confidence 876654 1 2223356778999999999999999776421 123566888899999
Q ss_pred HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHH
Q 022442 170 MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEEL 238 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~ 238 (297)
.+.|++++|+.+|++|++++|+++. ...++.+++..|+++++..+++.+....+.++. ...+.+.|.+.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 9999999999999999999999998 888999999999999988888777765322332 24556677777
Q ss_pred HHHHHhcCC-CCchhhhhcccc--hhHHHHHHHH
Q 022442 239 LLELESKQP-PPDLSDLLGLNL--EDEFVNGLEE 269 (297)
Q Consensus 239 l~~~~~~~~-~~~~~~~~~~~~--~d~~~~~~~~ 269 (297)
+.......| ++.....|+-.+ .+++.++++-
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 777765444 555555555544 4666555553
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.8e-13 Score=129.31 Aligned_cols=209 Identities=15% Similarity=0.149 Sum_probs=156.3
Q ss_pred cchhhhhhhhhcCCCCCcHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 13 SKKEDLFHVIHKVPAGDGPY--VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
....+.|..+.+.+++.... ..+..+++..|++++|+..++++++.+|+++.++..++.+|.+.|++++|++.+.++.
T Consensus 135 ~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 135 ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445566666654444322 3446788899999999999999999999999999999999999999999997776655
Q ss_pred hhCCcch----------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 91 GLCSKQS----------------------------------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 91 ~~~P~~~----------------------------------------~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
+..+.+. ...+...++..+...|+.++|...++++++..+
T Consensus 215 k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~ 294 (398)
T PRK10747 215 KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY 294 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4332100 112334467888999999999999999999644
Q ss_pred hhhhh--cCcc-hhHHhhhhhhH--HHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHc
Q 022442 131 QGEAF--NGKP-TKTARSHGKKF--QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKR 205 (297)
Q Consensus 131 ~~~~~--~~~~-~~~~~~~~~~~--~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~ 205 (297)
..... .+.. .......-... .+...|+++..+..+|.++...|++++|..+|+++++.+|++..+..|+.++.++
T Consensus 295 ~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 295 DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL 374 (398)
T ss_pred CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 32211 1110 00000000111 1466799999999999999999999999999999999999998888999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 022442 206 TRYNEARSVLEDVLYG 221 (297)
Q Consensus 206 g~~~eA~~~~~~al~~ 221 (297)
|+.++|..+|++.+..
T Consensus 375 g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 HKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999875
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=8.5e-14 Score=129.01 Aligned_cols=206 Identities=18% Similarity=0.163 Sum_probs=130.2
Q ss_pred chhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
..++-|....++ |.....|-.....+..+.+.++-...|.+|..+||.+++.++..|.++.-++++++|++-|++++.+
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445444444 3333345555556666666666777777777777777777777777777777777777777777777
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh-hhhc--C-cchhH--HhhhhhhHH--HhcCCC------c
Q 022442 93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-EAFN--G-KPTKT--ARSHGKKFQ--VSVRQE------T 158 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~-~~~~--~-~~~~~--~~~~~~~~~--~~l~p~------~ 158 (297)
+|.++. .+.-++.+..++++++++...|+.+++..|.- +.++ . .+++. .....+.+. +.++|. +
T Consensus 424 ~pe~~~--~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 DPENAY--AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred ChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 776432 22234445556667777777777766665532 1111 0 00000 000001111 345555 4
Q ss_pred HHHHHHHHHHHHH-CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 159 SRLLGNLAWAYMQ-KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 159 ~~~l~nLg~~y~~-~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+..+.+-|.+..+ .+++..|+.++++|+++||.... ...||.+..++|+.++|+++|++++..
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4445555544433 48999999999999999999998 889999999999999999999998875
No 43
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.59 E-value=9.6e-14 Score=138.31 Aligned_cols=149 Identities=13% Similarity=0.037 Sum_probs=136.0
Q ss_pred hhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch
Q 022442 18 LFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 97 (297)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~ 97 (297)
+-..+++.|....+++.++.+....|++++|+.++++++++.|++..++.+++.++.+++++++|...+++++...|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 34556788888889999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHH
Q 022442 98 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMA 177 (297)
Q Consensus 98 ~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~e 177 (297)
...+.+|.++.+.|++++|+++|++++... |+++.++.++|.+++..|+.++
T Consensus 155 --~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--------------------------p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 155 --REILLEAKSWDEIGQSEQADACFERLSRQH--------------------------PEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred --HHHHHHHHHHHHhcchHHHHHHHHHHHhcC--------------------------CCcHHHHHHHHHHHHHcCCHHH
Confidence 466678999999999999999999999853 4678899999999999999999
Q ss_pred HHHHHHHHHHhCCCcHH
Q 022442 178 AEVVYQKAQMIDPDANK 194 (297)
Q Consensus 178 A~~~y~~Al~~~P~~~~ 194 (297)
|..+|++|++...+-..
T Consensus 207 A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 207 ARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHHHHhhCcchH
Confidence 99999999998776654
No 44
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.58 E-value=1.6e-13 Score=118.73 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=127.9
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442 20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE 99 (297)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~ 99 (297)
..+.+.|.+... ......+...|+-+.+.....++....|.+.+.+..+|......|++.+|+..++++..+.|+++
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~-- 134 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW-- 134 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh--
Confidence 455555544444 44445555678877777777777777788887777788888888888888888888888888754
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
..++.+|.+|.+.|++++|-..|.+++++.| +.+.+.+|||..|.-.|+++.|.
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--------------------------~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAP--------------------------NEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhcc--------------------------CCchhhhhHHHHHHHcCCHHHHH
Confidence 4566678888888888888888888888743 34567788888888888888888
Q ss_pred HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.++.++....+.+.. ..||+.+...+|++.+|..+-.+-+
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 888888877776776 7788888888888888876654433
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.57 E-value=2.6e-13 Score=138.07 Aligned_cols=164 Identities=12% Similarity=0.098 Sum_probs=146.0
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 022442 28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID 107 (297)
Q Consensus 28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ 107 (297)
.+.-..-...++.-.|+.++|+..+++++..+|..+.++..+|.++..+|++++|+..+++++.+.|.+. .....++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND--DYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence 3333444566778899999999999999998999999999999999999999999999999999999854 34456888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
++...|++++|+..++++++.. |+++. +..+|.++...|++++|+..|+++++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~--------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA--------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999874 45677 89999999999999999999999999
Q ss_pred hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 188 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 188 ~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
++|+++. +..++.++...|+.++|+..++++..
T Consensus 145 ~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 145 RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 9999998 88999999999999999999986554
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=2.5e-13 Score=108.36 Aligned_cols=117 Identities=14% Similarity=0.001 Sum_probs=89.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 50 VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 50 ~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
+.|++++..+|++..+.+.+|..+.+.|++++|+..++.++..+|.+. .+...+|.+|...|++++|+..++++++..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357778888888888888888888888888888888888888888642 345557778888888888888888877764
Q ss_pred chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 130 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 130 p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
|+++.++.++|.+|...|++++|+..|+++++++|++..
T Consensus 82 --------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 --------------------------PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred --------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 345567778888888888888888888888888887765
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.55 E-value=7.3e-13 Score=134.28 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=122.9
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
|+.....+....+...+|+++.|+..|+++++.+|+++.+...+..++...|+.++|+..+++++ .|.+........+
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llal 108 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASA 108 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHH
Confidence 44444455556667789999999999999999999997666699999999999999999999999 4432222334445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
|.+|..+|++++|+++|+++++..| +++.++..|+.+|.+.++.++|+..++++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP--------------------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP--------------------------TNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC--------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 7899999999999999999999865 34555566666666666666666666666
Q ss_pred HHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+..+|++.....++.++..+++..+|+..|++++..
T Consensus 163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 666666444433444444455665566666666665
No 48
>PLN02789 farnesyltranstransferase
Probab=99.55 E-value=1.4e-12 Score=119.20 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=134.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH--
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV-- 115 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g-~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~-- 115 (297)
....++.++|+.++.++|.++|.+..+|+..|.++..+| ++++++..+++++..+|++.+ +.+..+.++.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq--aW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ--IWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--HhHHHHHHHHHcCchhh
Confidence 445678999999999999999999999999999999999 689999999999999998543 344467777888874
Q ss_pred HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-
Q 022442 116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK- 194 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~- 194 (297)
++++.+++++++++ |++..++.+.|+++..+|++++|++++.++|+.+|.|..
T Consensus 125 ~~el~~~~kal~~d--------------------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 125 NKELEFTRKILSLD--------------------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 78899998988874 456789999999999999999999999999999999998
Q ss_pred HhHHHHHHHHc---CCH----HHHHHHHHHHHhcC
Q 022442 195 ACNLGLCLIKR---TRY----NEARSVLEDVLYGR 222 (297)
Q Consensus 195 ~~nLg~~l~~~---g~~----~eA~~~~~~al~~~ 222 (297)
|++.+.++... |++ ++++.+..+++...
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 99999998876 334 46788888999873
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=1.1e-12 Score=114.66 Aligned_cols=141 Identities=18% Similarity=0.101 Sum_probs=120.5
Q ss_pred cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc
Q 022442 58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN 136 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~ 136 (297)
.++..++.++.+|..+...|++++|+..+++++..+|++.. ......+|.+|...|++++|+..|+++++..|..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---- 103 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH---- 103 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----
Confidence 34567889999999999999999999999999999997432 2345668999999999999999999999987621
Q ss_pred CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC--------CChHHHHHHHHHHHHhCCCcHH-H------------
Q 022442 137 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--------TNFMAAEVVYQKAQMIDPDANK-A------------ 195 (297)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~--------g~~~eA~~~y~~Al~~~P~~~~-~------------ 195 (297)
|..+.+++.+|.++.+. |++++|+..|++++..+|++.. +
T Consensus 104 -------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~ 164 (235)
T TIGR03302 104 -------------------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR 164 (235)
T ss_pred -------------------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH
Confidence 12334788999999887 8999999999999999999863 2
Q ss_pred -----hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 196 -----CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 196 -----~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+|.++..+|++.+|+..+++++..
T Consensus 165 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 165 LAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 36789999999999999999999987
No 50
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.54 E-value=3.6e-13 Score=109.30 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
..+.+|..+...|++++|+.+|+-+..++ |.+++.+++||.|+..+|+|.+|+.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--------------------------p~~~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--------------------------AWSFDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 34457888899999999999999988874 4577899999999999999999999
Q ss_pred HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 022442 181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE 243 (297)
Q Consensus 181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~ 243 (297)
+|.+|+.++|+++. ..|+|.|++..|+.+.|...|+.++......+.+..-.++|..+|..+.
T Consensus 91 aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 91 AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence 99999999999998 9999999999999999999999999863222344444566777777663
No 51
>PLN02789 farnesyltranstransferase
Probab=99.52 E-value=2.3e-12 Score=117.86 Aligned_cols=195 Identities=13% Similarity=0.025 Sum_probs=151.6
Q ss_pred chhhhhhh-hhcCCCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCh--HHHHHHHHHH
Q 022442 14 KKEDLFHV-IHKVPAGDGPYVRAKHAQLVQK-DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS--EEAIEAIKSF 89 (297)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~--~eAi~~~~~a 89 (297)
+.-+++.. +...|...++...-+.+....| ++++++.++.+++..+|++..+|++.+.++...|+. +++++.++++
T Consensus 55 rAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 55 RALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 33344433 4444655556555555555556 689999999999999999999999999999999984 7889999999
Q ss_pred HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442 90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y 169 (297)
+..+|++. .+++..+.++...|++++|++.+.++|+++| .+..++++.|.++
T Consensus 135 l~~dpkNy--~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--------------------------~N~sAW~~R~~vl 186 (320)
T PLN02789 135 LSLDAKNY--HAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--------------------------RNNSAWNQRYFVI 186 (320)
T ss_pred HHhCcccH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--------------------------CchhHHHHHHHHH
Confidence 99999853 3445578889999999999999999999854 4667899999998
Q ss_pred HHC---CCh----HHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHH
Q 022442 170 MQK---TNF----MAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEE 237 (297)
Q Consensus 170 ~~~---g~~----~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~ 237 (297)
..+ |++ ++++.+..+++.++|+|.. |..++.++.. +++..+|+..+.+++.. .+... .|.+
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~----~al~ 259 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHV----FALS 259 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcH----HHHH
Confidence 876 334 4788888999999999998 9999999988 46678899999888774 22222 2556
Q ss_pred HHHHHH
Q 022442 238 LLLELE 243 (297)
Q Consensus 238 ~l~~~~ 243 (297)
.|.++-
T Consensus 260 ~l~d~~ 265 (320)
T PLN02789 260 DLLDLL 265 (320)
T ss_pred HHHHHH
Confidence 666553
No 52
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.50 E-value=8.9e-13 Score=105.11 Aligned_cols=110 Identities=20% Similarity=0.169 Sum_probs=99.5
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 163 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~ 163 (297)
+.+++++..+|++. .....+|..+...|++++|+..+++++.+. |+++.++.
T Consensus 4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~~~~~ 55 (135)
T TIGR02552 4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAYD--------------------------PYNSRYWL 55 (135)
T ss_pred hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------CCcHHHHH
Confidence 46788999999843 445568899999999999999999998874 45678999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++|.+|..+|++++|+.+|+++++++|+++. ++++|.++...|++++|+..+++++..
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 999999999999999999999999997
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6e-12 Score=114.87 Aligned_cols=213 Identities=18% Similarity=0.160 Sum_probs=171.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
.+.+-.+.+.+..++++.|+.+-+|+|+.+|++..++..-|.++.++||.++|+-+|+.+..+.|-+ ...+--|...|
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r--L~~Y~GL~hsY 378 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR--LEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh--HHHHHHHHHHH
Confidence 3444455566678999999999999999999999999999999999999999999999999999963 23444477899
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhh-h--cCc----chhHHhhhhhhHH---HhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEA-F--NGK----PTKTARSHGKKFQ---VSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~-~--~~~----~~~~~~~~~~~~~---~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
...|++.||...-+.+++..|.++- . .|. .....+.-.++|. +.++|....+.+-++..+...|++++++
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence 9999999999999999998775421 1 110 0111111122333 6889999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCCCCch
Q 022442 180 VVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDL 251 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 251 (297)
..++++|...||..-+..||.++...+.+.+|.+.|..++.. +|.+.. +.+=++.+++...++++
T Consensus 459 ~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~~~----sl~Gl~~lEK~~~~~DA 523 (564)
T KOG1174|consen 459 KLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKSKR----TLRGLRLLEKSDDESDA 523 (564)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CccchH----HHHHHHHHHhccCCCCc
Confidence 999999999999999999999999999999999999999997 554433 55556666655545444
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.8e-12 Score=120.32 Aligned_cols=184 Identities=15% Similarity=0.108 Sum_probs=127.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 115 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~ 115 (297)
|-.++..|+.-.|-..+.++|.++|.+...+..+|.+|.+.++.++-...|.++..++|.++ .++..-|.+++-++++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~--dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP--DVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC--chhHhHHHHHHHHHHH
Confidence 45577899999999999999999999999999999999999999999999999999999854 4666678999999999
Q ss_pred HHHHHHHHHHHHhhchhh-hhcCc---chhH--HhhhhhhHHH--hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 116 EEQIEMLKRKLRLIYQGE-AFNGK---PTKT--ARSHGKKFQV--SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~-~~~~~---~~~~--~~~~~~~~~~--~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
++|+.-|++++.++|... ++... ..+. .......|.- .-=|+.+++++-.|.++..+++|+.|++.|.+|++
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999999999977432 11100 0000 0011112221 11155566666666666666666666666666666
Q ss_pred hCCC------cHH-HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442 188 IDPD------ANK-ACNLGLCLI-KRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 188 ~~P~------~~~-~~nLg~~l~-~~g~~~eA~~~~~~al~~ 221 (297)
+.|+ ++. +.+-|.+.. =.+++.+|+.+++++++.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 6666 443 333222211 125666666666666665
No 55
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.47 E-value=8e-12 Score=108.21 Aligned_cols=150 Identities=18% Similarity=0.182 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 122 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~ 122 (297)
.+...+...+-+....+|++.++ .+++..+...|+-+.+..+.......+|.+. .+...+|....+.|++.+|+..+
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~--~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR--ELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH--HHHHHHHHHHHHhcchHHHHHHH
Confidence 34444666666778889999999 9999999999999999999999888888743 35555788889999999999999
Q ss_pred HHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442 123 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC 201 (297)
Q Consensus 123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~ 201 (297)
+++..+.| ++.++++-+|.+|.+.|++++|...|.+++++.|+.+. ..|||..
T Consensus 124 rkA~~l~p--------------------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms 177 (257)
T COG5010 124 RKAARLAP--------------------------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177 (257)
T ss_pred HHHhccCC--------------------------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence 99998854 56789999999999999999999999999999999998 9999999
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 022442 202 LIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 202 l~~~g~~~eA~~~~~~al~~ 221 (297)
|.-.|+++.|..++..+...
T Consensus 178 ~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhC
Confidence 99999999999999999886
No 56
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.46 E-value=5.1e-12 Score=116.80 Aligned_cols=157 Identities=14% Similarity=0.076 Sum_probs=124.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~----g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
+..+...|++++|+..+++++..+|++..++.. +..+... |+.+.+...++......|.. .....++|.++..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHH
Confidence 445678999999999999999999999887775 5555444 44555555554433344442 2334457889999
Q ss_pred cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~ 191 (297)
+|++++|+..+++++++.| +++.++..+|.+|.+.|++++|+.++++++...|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p--------------------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 127 AGQYDRAEEAARRALELNP--------------------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred cCCHHHHHHHHHHHHhhCC--------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 9999999999999999854 45668899999999999999999999999999875
Q ss_pred cH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 192 AN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 192 ~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++ . +.++|.++..+|++++|+..|++++..
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 43 2 457999999999999999999998764
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3e-12 Score=120.62 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=134.2
Q ss_pred chhhhhhhh-hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 14 KKEDLFHVI-HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 14 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
|.=.+|... .-+|..-.|+...|.-+...+.+.-|..+|.+|+.+.|++|-.++.+|++....+.|.+|+..|+.++..
T Consensus 364 QAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 333455444 4446566688888888888999999999999999999999999999999999999999999999988743
Q ss_pred CC----cc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHH
Q 022442 93 CS----KQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAW 167 (297)
Q Consensus 93 ~P----~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~ 167 (297)
-+ .. .|....++||.+|++++++++||..|+++|.+.| .+++++..+|.
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~--------------------------k~~~~~asig~ 497 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP--------------------------KDASTHASIGY 497 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC--------------------------CchhHHHHHHH
Confidence 33 21 2456677899999999999999999999999854 57789999999
Q ss_pred HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442 168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC 201 (297)
Q Consensus 168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~ 201 (297)
+|.-+|+++.|+.+|.+||.++|++.. -.-|+.+
T Consensus 498 iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 999999999999999999999999975 4444543
No 58
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.8e-12 Score=114.29 Aligned_cols=129 Identities=20% Similarity=0.222 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
++-+..-|.-+.+.++|.+|+..|.++|.++|.++ .++.+-+.+|.++|.++.|++-.+.+|.++|
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp------------ 146 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDP------------ 146 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh------------
Confidence 45577789999999999999999999999999854 4565678899999999999999999999854
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHH---HHHHHHHHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYN---EARSVLEDV 218 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~---eA~~~~~~a 218 (297)
.+..+|..||.+|..+|++.+|++.|++||+++|+|.. +.+|..+-.+++..+ .+...++-+
T Consensus 147 --------------~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~ 212 (304)
T KOG0553|consen 147 --------------HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA 212 (304)
T ss_pred --------------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence 45678999999999999999999999999999999998 888888877776655 444444433
Q ss_pred H
Q 022442 219 L 219 (297)
Q Consensus 219 l 219 (297)
.
T Consensus 213 ~ 213 (304)
T KOG0553|consen 213 G 213 (304)
T ss_pred h
Confidence 3
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.42 E-value=2.9e-11 Score=111.80 Aligned_cols=171 Identities=15% Similarity=0.019 Sum_probs=125.0
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHH
Q 022442 27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN 103 (297)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~ 103 (297)
+-..+++.++.++...|+.+.|...+.++.+..|. ..+..+..|.++...|++++|++.+++++..+|++. ....
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a~~ 81 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LALK 81 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHH
Confidence 33446666777777778888888888877776553 345666778888888888888888888888888743 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
. +..+...|++..+.....+++.... ...|+...++..+|.++..+|++++|+..++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWA----------------------PENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccC----------------------cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 3333444444444443334333210 1134556678899999999999999999999
Q ss_pred HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
++++++|+++. +..+|.++...|++++|+.++++++...
T Consensus 139 ~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 139 RALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 99999999998 8899999999999999999999999864
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=1.2e-11 Score=118.69 Aligned_cols=173 Identities=23% Similarity=0.278 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---C--cc-
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---S--KQ- 96 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~---P--~~- 96 (297)
++.++..++...|++++|..++++|+.+ .|..+..+.+++.++..++++++|+.++++++++. | ++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 4667777889999999999999999974 45567778999999999999999999999887643 2 22
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442 97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~ 176 (297)
........||.+|..+|+++||.+.|+++|.+..... ++. .+.....+++||..|.+.+++.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~-------------~~~-----~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL-------------GKK-----DYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-------------cCc-----ChhhhHHHHHHHHHHHHhcccc
Confidence 1234557799999999999999999999999842100 000 0112347899999999999999
Q ss_pred HHHHHHHHHHHh----CCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 177 AAEVVYQKAQMI----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 177 eA~~~y~~Al~~----~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|...|.++..+ .|+++ . ..||+.+|..+|++++|+.+.++++..
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999976 35554 3 679999999999999999999998853
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.6e-11 Score=113.20 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=124.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
....||+++|...|+.|+..+..-.++++++|..+..+|+.++|++.|-++-.+--+++ .+..-++++|..+.+...|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--EVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhhCHHHH
Confidence 44568888888888888888888888888888888888888888888776544333322 3444477888888888888
Q ss_pred HHHHHHHHHhhchhhhhcCcchhHHhhhhhh---HH-----HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKK---FQ-----VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---~~-----~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
|+.|-++..+.|.+.+...++..+....+++ |+ ...=|-+-.+.--||..|....=+++|+.+|++|--+.|
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 8888888888775544322222222222222 22 122245555666677777777777888888888877788
Q ss_pred CcHHH-hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 191 DANKA-CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 191 ~~~~~-~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+...| ..++.|+.+.|+|..|.+.|+.+-..
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77774 45677888888888888888776654
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.37 E-value=9.5e-12 Score=123.25 Aligned_cols=176 Identities=15% Similarity=0.174 Sum_probs=92.0
Q ss_pred hhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 17 DLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 17 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
+.| .++..+|+=-.+|.+++-++...+...+|..++..++..+..++.++..+|..+.....+.-|-+-|+..++.-..
T Consensus 517 e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 517 EMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 444 4444445444455555544545556666666666666666666666666666666666666665544443322111
Q ss_pred --chHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442 96 --QSQESLDNVLIDLYKK------------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161 (297)
Q Consensus 96 --~~~~~l~~~L~~ly~~------------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 161 (297)
++. ....||++|++ .+.+++|+++|.++|+..| .+..+
T Consensus 597 ~~D~Y--sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp--------------------------kN~yA 648 (1018)
T KOG2002|consen 597 KTDAY--SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP--------------------------KNMYA 648 (1018)
T ss_pred CCchh--HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc--------------------------chhhh
Confidence 111 11123443332 2445555666666555544 34444
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
-+.+|.|+...|++.+|..+|.++.+.--++.+ |.|||.||..+|+|-.|+++|+.++.
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555444554 55555555555555555555555554
No 63
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.36 E-value=2.4e-11 Score=98.69 Aligned_cols=109 Identities=11% Similarity=-0.030 Sum_probs=94.3
Q ss_pred HcC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh
Q 022442 57 NAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF 135 (297)
Q Consensus 57 ~~~-p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~ 135 (297)
... ++.-+.++.+|..+.+.|++++|+..|+-+..++|.++ ..+..||.++..+|++.+||.+|.+++.+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------ 99 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQIK------ 99 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence 355 66677889999999999999999999999999999753 344558999999999999999999999874
Q ss_pred cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 136 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
|+++..+.|+|.||...|+.+.|.++|+.|+..--+++
T Consensus 100 --------------------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 100 --------------------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred --------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 56888999999999999999999999999998864444
No 64
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=4.2e-10 Score=106.71 Aligned_cols=244 Identities=9% Similarity=0.015 Sum_probs=167.3
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV 104 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~ 104 (297)
|.....+.-+..++...|+++.|..++.++.+..|+.. .+....+.++.+.|++++|.+.+++.++..|+++ .+...
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~--~~l~l 192 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK--EVLKL 192 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence 33333455667788889999999999999999888875 4555579999999999999999999999999864 45666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhc-hhhhhc--------CcchhHHhhhh-hhHH--HhcCC----CcHHHHHHHHHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIY-QGEAFN--------GKPTKTARSHG-KKFQ--VSVRQ----ETSRLLGNLAWA 168 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p-~~~~~~--------~~~~~~~~~~~-~~~~--~~l~p----~~~~~l~nLg~~ 168 (297)
++.+|.+.|++++|+..+.+.++... ++..+. +.........+ ..+. ..-.| +++.++..+|..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 89999999999999999999997632 111110 00000000000 0111 12234 578899999999
Q ss_pred HHHCCChHHHHHHHHHHHHhCCCcHH-H--hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--c----------chhhHH
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDPDANK-A--CNLGLCLIKRTRYNEARSVLEDVLYGRIPGC--E----------DGRTRK 233 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~--~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~--~----------~~~~~~ 233 (297)
+...|++++|+..++++++..|++.. . .-........++.+.++..+++++...|.++ . ..+.++
T Consensus 273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 99999999999999999999999885 2 2223334455788889999999988755444 2 245666
Q ss_pred HHHHHHHH--HHhcCCCCchhhhhcccc-----hhHHHHHHHHHH
Q 022442 234 RAEELLLE--LESKQPPPDLSDLLGLNL-----EDEFVNGLEEMV 271 (297)
Q Consensus 234 ~a~~~l~~--~~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~l 271 (297)
.|.+.++. .....|++.....+|..+ .++..+-|.+-+
T Consensus 353 ~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777773 222334433333444433 255555555543
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.35 E-value=2.3e-10 Score=116.33 Aligned_cols=181 Identities=11% Similarity=-0.010 Sum_probs=142.5
Q ss_pred ccccccchhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 8 KKIFSSKKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI 86 (297)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~ 86 (297)
++|.....-+.|..+.+. |..+.+......++...|+.++|+.++++++.-.|.....+..+|.++..+|++++|+++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445455666777555544 5543333366667778899999999999999544555666666688999999999999999
Q ss_pred HHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442 87 KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA 166 (297)
Q Consensus 87 ~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg 166 (297)
+++++.+|+++ .+...++.+|...|+.++|+..+++++...|. +. .+..++
T Consensus 126 ~kaL~~dP~n~--~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--------------------------~~-~~l~la 176 (822)
T PRK14574 126 QSSLKKDPTNP--DLISGMIMTQADAGRGGVVLKQATELAERDPT--------------------------VQ-NYMTLS 176 (822)
T ss_pred HHHHhhCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--------------------------hH-HHHHHH
Confidence 99999999864 34445689999999999999999999988651 11 124456
Q ss_pred HHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 167 WAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
.++..++++.+|+..|+++++.+|++.. ...+..++...|-..-|++...+
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 6666788888899999999999999999 88999999999999999877764
No 66
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=2.2e-10 Score=102.67 Aligned_cols=192 Identities=11% Similarity=0.056 Sum_probs=157.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
...+|.-.+..|++..|+.-|..|+..+|++-.+++.-|.+|..+|+..-|+.-+.+++.+-|+.. ....--|.++.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--AARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--HHHHHhchhhhh
Confidence 445666677899999999999999999999999999999999999999999999999999999843 233345788999
Q ss_pred cCCHHHHHHHHHHHHHhhchhhhhcC---c---------chhHHh------hhhhh-----HHHhcCCCcHHHHHHHHHH
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEAFNG---K---------PTKTAR------SHGKK-----FQVSVRQETSRLLGNLAWA 168 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~~~~---~---------~~~~~~------~~~~~-----~~~~l~p~~~~~l~nLg~~ 168 (297)
+|.+++|++-|+++|.-.|....... . +..... ++... -.+++.|=++..+...+.|
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 99999999999999998773211100 0 000000 00111 1157778888889999999
Q ss_pred HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCED 228 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~ 228 (297)
|...|+...||.-++.|-++..|+.. ++.++.++...|+.+.++...++.|.. +|++
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdH 256 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDH 256 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---Ccch
Confidence 99999999999999999999999998 999999999999999999999999998 5554
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.33 E-value=7.5e-10 Score=104.63 Aligned_cols=199 Identities=9% Similarity=0.036 Sum_probs=135.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSAL-KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~-~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~ 114 (297)
...+...|+++.|..+|.++.+.+|+...+. ...+.++..+|++++|++.+++..+..|++. .+...++.+|.+.|+
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~--~al~ll~~~~~~~gd 202 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP--EVLRLAEQAYIRTGA 202 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHh
Confidence 4555788888888888888888888875333 3448888888999999998888888888743 455567888888899
Q ss_pred HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh-----hHH--H--------------------hcCCCcHHHHHHHHH
Q 022442 115 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK-----KFQ--V--------------------SVRQETSRLLGNLAW 167 (297)
Q Consensus 115 ~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~-----~~~--~--------------------~l~p~~~~~l~nLg~ 167 (297)
+++|+.++.+..+... ....... .+. + .-.|+++.++..++.
T Consensus 203 w~~a~~~l~~l~k~~~-----------~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~ 271 (398)
T PRK10747 203 WSSLLDILPSMAKAHV-----------GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE 271 (398)
T ss_pred HHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence 9888888888777532 0011111 000 0 122457777888888
Q ss_pred HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHH
Q 022442 168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAE 236 (297)
Q Consensus 168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~ 236 (297)
.+...|+.++|....+++++..| ++. ..-.+.+ ..|+.++++...++++...|.++. ..+.++.|.
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888888888443 443 3333333 348888888888888876433332 245566777
Q ss_pred HHHHHHHhcCCCCc
Q 022442 237 ELLLELESKQPPPD 250 (297)
Q Consensus 237 ~~l~~~~~~~~~~~ 250 (297)
+.++......|+..
T Consensus 349 ~~le~al~~~P~~~ 362 (398)
T PRK10747 349 LAFRAALKQRPDAY 362 (398)
T ss_pred HHHHHHHhcCCCHH
Confidence 77777765555433
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.8e-10 Score=106.05 Aligned_cols=190 Identities=19% Similarity=0.145 Sum_probs=147.8
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHH-HH---HH
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQE-SL---DN 103 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~-~l---~~ 103 (297)
......+|.....+.+++.|++.|.+++.++ .+..-+++.+.+|...|.+.+.+..+..+++.+-.. ... .+ ..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 3457778888899999999999999999999 888889999999999999999999999888776531 000 11 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhh--HHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK--FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 181 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~ 181 (297)
.+|..|.+.++++.|+..|.++|.-.-.....+. .+......+. -...++|+-+.--.+-|..++..|+|.+|+.+
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~--lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSK--LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH--HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 2567899999999999999998875311111110 0000000000 11356677777777789999999999999999
Q ss_pred HHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 182 YQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 182 y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|.+|+..+|+++. +.|.|.||.++|.+.+|+.-.+.+++.
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999999 889999999999999999999999998
No 69
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.31 E-value=8.2e-11 Score=116.73 Aligned_cols=201 Identities=16% Similarity=0.142 Sum_probs=150.6
Q ss_pred hhhhcCCCC---CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 20 HVIHKVPAG---DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 20 ~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
|+++.+-+. ...|+..+..+...|++++|-.+|.++++.+|++ .-+++.||.+++..|++++|+..|++++...|+
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 455555322 2358889999999999999999999999999887 667888999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhchh-hhhcC--------cchhHHhhhhhhH---HHhcCCCcH
Q 022442 96 QSQESLDNVLIDLYKKCG----KVEEQIEMLKRKLRLIYQG-EAFNG--------KPTKTARSHGKKF---QVSVRQETS 159 (297)
Q Consensus 96 ~~~~~l~~~L~~ly~~~g----~~~eAi~~~~~al~~~p~~-~~~~~--------~~~~~~~~~~~~~---~~~l~p~~~ 159 (297)
. .....+||.+|...+ .-+.|..+..++++..|.+ .++.. .........+... .-.-.+=.+
T Consensus 375 ~--~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 N--YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred h--HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCH
Confidence 4 245566899988776 6789999999999987643 22210 0000000001110 001122246
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcH-----H-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDAN-----K-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~-----~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
.+++|+|..++.+|.+++|..+|.+|+.. +++.. . .+|||.++...++++.|...|..++...
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 78999999999999999999999999976 34432 3 6899999999999999999999999863
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=4.4e-11 Score=106.54 Aligned_cols=218 Identities=15% Similarity=0.127 Sum_probs=160.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC
Q 022442 34 RAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG 113 (297)
Q Consensus 34 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g 113 (297)
+.+.+++.-|-+.+|.+.++.+++..|. ++.+..|+.+|...++...|+..|...++..|.+. ....-.+.++..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V--T~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV--TYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh--hhhhhhHHHHHHHH
Confidence 4577889999999999999999997765 67788999999999999999999999999999843 33334578999999
Q ss_pred CHHHHHHHHHHHHHhhchhh-hh--------c-CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 114 KVEEQIEMLKRKLRLIYQGE-AF--------N-GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 114 ~~~eAi~~~~~al~~~p~~~-~~--------~-~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
++++|.++|+.++++.|... +. . +++.-..+...+.+ .+--.++..+.|+|.|++-.+.+|-++..|+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL--qmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL--QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH--HhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999999976431 11 1 11111111111122 2233577899999999999999999999999
Q ss_pred HHHHhC--CCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHHHHHHHhcCCC-
Q 022442 184 KAQMID--PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP- 248 (297)
Q Consensus 184 ~Al~~~--P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~l~~~~~~~~~- 248 (297)
+|+... |+.. + |+|||.+....|++.-|...|+-++...+.... .......|..++....+..|+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 999864 5544 5 999999999999999999999999986221111 123344566666655554444
Q ss_pred Cchhhhhc
Q 022442 249 PDLSDLLG 256 (297)
Q Consensus 249 ~~~~~~~~ 256 (297)
.+...|++
T Consensus 463 ~E~~~Nl~ 470 (478)
T KOG1129|consen 463 AEVTTNLQ 470 (478)
T ss_pred ccccccee
Confidence 33334443
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.4e-09 Score=96.89 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=158.2
Q ss_pred chhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIK 87 (297)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~ 87 (297)
+.-|+|-.+.+. |..-.+...+|.++-..|..|.||..-+..+. .|+. .-++..||.-|...|-+|.|..+|.
T Consensus 53 KAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~ 131 (389)
T COG2956 53 KAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN 131 (389)
T ss_pred hHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 456788444444 66667899999999999999999998865544 5653 3478899999999999999999999
Q ss_pred HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-----hhcCcchhH--Hhh-hhh---h--HHHhc
Q 022442 88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-----AFNGKPTKT--ARS-HGK---K--FQVSV 154 (297)
Q Consensus 88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-----~~~~~~~~~--~~~-~~~---~--~~~~l 154 (297)
.+.+. |..+. ...-.|..+|.+..++++||++-++.+++.+... .|...+... ..+ ..+ . -.+..
T Consensus 132 ~L~de-~efa~-~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 132 QLVDE-GEFAE-GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHhcc-hhhhH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 88764 33333 3334477899999999999999999999866431 111100000 000 001 0 11567
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 155 ~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~--~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|...++-..||.++...|+|..|++.++++++.||+... .-.|..||..+|+.++.+..+.+..+.
T Consensus 210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8888999999999999999999999999999999999986 567999999999999999999999986
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.30 E-value=7.8e-10 Score=109.20 Aligned_cols=209 Identities=21% Similarity=0.167 Sum_probs=158.0
Q ss_pred ccchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 12 SSKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
....++.+. ++..-|..+.||..++.++-..||.+++..+.-.|..++|++.+-|..++....++|.+.+|+-+|.+++
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344455553 4445588888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-------------hc--C------------------
Q 022442 91 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-------------FN--G------------------ 137 (297)
Q Consensus 91 ~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-------------~~--~------------------ 137 (297)
+.+|.++. +...-+.+|.+.|++..|...|.+++.+.|+... +. +
T Consensus 235 ~~~p~n~~--~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 235 QANPSNWE--LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred hcCCcchH--HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 99998643 3333578899999999999999999988772100 00 0
Q ss_pred c----------------------chhH--Hhh-------------------------hhh-------h------------
Q 022442 138 K----------------------PTKT--ARS-------------------------HGK-------K------------ 149 (297)
Q Consensus 138 ~----------------------~~~~--~~~-------------------------~~~-------~------------ 149 (297)
. ...+ ... .++ .
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~ 392 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE 392 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc
Confidence 0 0000 000 000 0
Q ss_pred ---------HHHhcC--C-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHH
Q 022442 150 ---------FQVSVR--Q-ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVL 215 (297)
Q Consensus 150 ---------~~~~l~--p-~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~ 215 (297)
+...-+ | +..+.+..++.+|.+.|+|.+|+.+|-.++...+.+. . |+++|.||..+|.+++|+..|
T Consensus 393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 000000 1 3456788999999999999999999999998888766 4 999999999999999999999
Q ss_pred HHHHhcC
Q 022442 216 EDVLYGR 222 (297)
Q Consensus 216 ~~al~~~ 222 (297)
++++...
T Consensus 473 ~kvl~~~ 479 (895)
T KOG2076|consen 473 EKVLILA 479 (895)
T ss_pred HHHHhcC
Confidence 9999873
No 73
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=7e-11 Score=109.97 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=87.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 145 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~ 145 (297)
+...|..+...|++++|+..|++++.++|++. .++..+|.+|...|++++|+..+++++.+.|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--------------- 67 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIELDP--------------- 67 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------
Confidence 44567777788888888888888888888743 3555578888888888888888888888743
Q ss_pred hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442 146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 205 (297)
Q Consensus 146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~ 205 (297)
+++.+++++|.+|..+|+|++|+.+|++++.++|++.. ...++.|...+
T Consensus 68 -----------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 -----------SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999998887 66666665444
No 74
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=4.6e-11 Score=105.40 Aligned_cols=111 Identities=22% Similarity=0.144 Sum_probs=96.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442 38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
-+...+++.+|+..|.+||+++|+++-.+-+-+.+|.++|.++.|++-++.++.++|.. ...+..||.+|..+|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHHH
Confidence 35678999999999999999999999999999999999999999999999999999974 3455568999999999999
Q ss_pred HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442 118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~ 176 (297)
|++.|+++|++.| +++....+|.++-..++...
T Consensus 168 A~~aykKaLeldP--------------------------~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDP--------------------------DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCC--------------------------CcHHHHHHHHHHHHHhcCCC
Confidence 9999999999855 45556677777776666655
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.29 E-value=1.2e-10 Score=96.76 Aligned_cols=126 Identities=10% Similarity=0.013 Sum_probs=93.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRV--DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eA 118 (297)
++.+..+...+...++..+.. ..+++++|.++..+|++++|+..|++++.+.|+.. ....+..+|.+|...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 444556666665555555544 66789999999999999999999999998877521 123556689999999999999
Q ss_pred HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHH-------HCCChH-------HHHHHHHH
Q 022442 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM-------QKTNFM-------AAEVVYQK 184 (297)
Q Consensus 119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~-------~~g~~~-------eA~~~y~~ 184 (297)
+..|++++.+.| .....+.++|.+|. .+|+++ +|+.+|++
T Consensus 92 ~~~~~~Al~~~~--------------------------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 92 LEYYFQALERNP--------------------------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHhCc--------------------------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999998854 23344555555555 777766 66677777
Q ss_pred HHHhCCCcH
Q 022442 185 AQMIDPDAN 193 (297)
Q Consensus 185 Al~~~P~~~ 193 (297)
++..+|++.
T Consensus 146 a~~~~p~~~ 154 (168)
T CHL00033 146 AIALAPGNY 154 (168)
T ss_pred HHHhCcccH
Confidence 778888765
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.26 E-value=7.1e-10 Score=109.49 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=135.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
....|++++|+..+..+|+.+|.++.+|+.||.+|-++|+.+++....-.+..++|++. ..+..++++..++|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHH
Confidence 44569999999999999999999999999999999999999999999999999999865 4555689999999999999
Q ss_pred HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-----
Q 022442 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----- 193 (297)
Q Consensus 119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~----- 193 (297)
+-+|.+||+.+|+ +-........+|.++|++..|...|++++.+.|...
T Consensus 227 ~~cy~rAI~~~p~--------------------------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 227 RYCYSRAIQANPS--------------------------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred HHHHHHHHhcCCc--------------------------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 9999999999662 334677889999999999999999999999999322
Q ss_pred H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 194 K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 194 ~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+ ....+..+...++.+.|+..++.++..
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 1 345678888999889999999999883
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=3.7e-11 Score=106.97 Aligned_cols=198 Identities=14% Similarity=0.119 Sum_probs=154.1
Q ss_pred hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHH
Q 022442 21 VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES 100 (297)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~ 100 (297)
.++.- +.+..|.-+..++..-.++..|+..|.+.+...|.+...+..++.++-.++++++|+++|+.+++.+|.+. .
T Consensus 249 sL~q~-~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv--E 325 (478)
T KOG1129|consen 249 SLTQF-PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV--E 325 (478)
T ss_pred HhhcC-CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc--e
Confidence 34443 46777888888888889999999999999999999998899999999999999999999999999999743 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-hhhhhcCcch------hH---HhhhhhhHHHhcCCC-cHHHHHHHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIY-QGEAFNGKPT------KT---ARSHGKKFQVSVRQE-TSRLLGNLAWAY 169 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~~------~~---~~~~~~~~~~~l~p~-~~~~l~nLg~~y 169 (297)
.....+.-|+-.|+.+-|+..|++.|.+-- .+..|++... .. ..+..+.....-+|+ -+++|+|||.+.
T Consensus 326 aiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 326 AIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred eeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 222356667888999999999999998732 1233321100 00 000001111122233 468999999999
Q ss_pred HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 170 MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
...|++.-|..+|+-||.-+|++.. +.|||.+-.+.|+.++|..++..+-..
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999999999999999998 999999999999999999999988876
No 78
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=1.5e-09 Score=101.24 Aligned_cols=134 Identities=18% Similarity=0.065 Sum_probs=119.9
Q ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442 60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 139 (297)
Q Consensus 60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~ 139 (297)
|....+++..+..+...|.+++|...++.+++..|+++ .+....++++.+.|+.++|++.+++++.+.|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P--------- 371 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALALDP--------- 371 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---------
Confidence 78888999999999999999999999999999999854 3455678999999999999999999999865
Q ss_pred hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
+.+.+..++|.+|.+.|++.+|+..+.+.+.-+|+++. |.-|+.+|..+|+..+|...+-+.
T Consensus 372 -----------------~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 372 -----------------NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred -----------------CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 34557889999999999999999999999999999998 999999999999999999888877
Q ss_pred Hhc
Q 022442 219 LYG 221 (297)
Q Consensus 219 l~~ 221 (297)
...
T Consensus 435 ~~~ 437 (484)
T COG4783 435 YAL 437 (484)
T ss_pred HHh
Confidence 764
No 79
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.25 E-value=2.6e-10 Score=95.26 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442 61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 139 (297)
Q Consensus 61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~ 139 (297)
....+++++|..+...|++++|+..|++++...|+... ......+|.+|...|++++|+..|++++...|
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------- 103 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------- 103 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------
Confidence 45566788888888888888888888888877665211 23455678888888888888888888887643
Q ss_pred hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHHHhCCCc
Q 022442 140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN--------------FMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~--------------~~eA~~~y~~Al~~~P~~ 192 (297)
++...+.++|.+|..+|+ +++|+.++++++..+|++
T Consensus 104 -----------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 104 -----------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -----------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 345567778888888777 455555555555556555
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.3e-10 Score=105.13 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=122.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc
Q 022442 33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC 112 (297)
Q Consensus 33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~ 112 (297)
.+.|..+...++++.|+.+|.+++.-.-+ ..++.+....++++...+...-++|.-+. -...-|+-+++.
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~--e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAE--EEREKGNEAFKK 371 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHH--HHHHHHHHHHhc
Confidence 33444555567777788888776653222 55666667777777777777777776322 222347888999
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442 113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
|+|.+|+..|.++|+.+ |+++.++.|.|.||..+|.+.+|+...+++++++|++
T Consensus 372 gdy~~Av~~YteAIkr~--------------------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD--------------------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred cCHHHHHHHHHHHHhcC--------------------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 99999999999999984 5678899999999999999999999999999999999
Q ss_pred HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 193 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 193 ~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.. +..-|.++..+.+|++|...|+++++.
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98 888899999999999999999999997
No 81
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=1.8e-09 Score=100.82 Aligned_cols=157 Identities=23% Similarity=0.134 Sum_probs=132.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
....|++++|+..++..++..|+++..+...+.++...|+..+|++.+++++.+.|.. ..+..++|..|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHH
Confidence 4568999999999999999999999999999999999999999999999999999984 35667799999999999999
Q ss_pred HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL 198 (297)
Q Consensus 119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL 198 (297)
+..+++.+..+ |+++..|..|+.+|..+|+-.+|...+-
T Consensus 394 i~~L~~~~~~~--------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~A--------------- 432 (484)
T COG4783 394 IRILNRYLFND--------------------------PEDPNGWDLLAQAYAELGNRAEALLARA--------------- 432 (484)
T ss_pred HHHHHHHhhcC--------------------------CCCchHHHHHHHHHHHhCchHHHHHHHH---------------
Confidence 99999988763 5788999999999999999999877654
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442 199 GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL 242 (297)
Q Consensus 199 g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~ 242 (297)
..|...|++++|+..+.++.+....+...+. ++.....++
T Consensus 433 -E~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a---R~dari~~~ 472 (484)
T COG4783 433 -EGYALAGRLEQAIIFLMRASQQVKLGFPDWA---RADARIDQL 472 (484)
T ss_pred -HHHHhCCCHHHHHHHHHHHHHhccCCcHHHH---HHHHHHHHH
Confidence 4566789999999999998886444454443 444444444
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=1.6e-09 Score=105.63 Aligned_cols=195 Identities=14% Similarity=0.065 Sum_probs=134.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHH
Q 022442 25 VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINA-GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN 103 (297)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~ 103 (297)
-|.++.+.+++...+...++.+.|....++++.+ +-.++.+|+.|+.++..++|+.+|+.+...++.-.|++.....+.
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 3677778888888888899999999999999999 556788999999999999999999998888777666521000000
Q ss_pred HHHHHHHHcC-------------------------------------------CHHHHHHHHHHHHHh------------
Q 022442 104 VLIDLYKKCG-------------------------------------------KVEEQIEMLKRKLRL------------ 128 (297)
Q Consensus 104 ~L~~ly~~~g-------------------------------------------~~~eAi~~~~~al~~------------ 128 (297)
..+-...| +..+|+..++++..+
T Consensus 554 --~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 554 --IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred --hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 01111122 333333333333332
Q ss_pred ------------------------------------------------hchhhhh-c--CcchhHHhhhhhh---H--HH
Q 022442 129 ------------------------------------------------IYQGEAF-N--GKPTKTARSHGKK---F--QV 152 (297)
Q Consensus 129 ------------------------------------------------~p~~~~~-~--~~~~~~~~~~~~~---~--~~ 152 (297)
.|-.... . |........+... | .+
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1100000 0 0000000011111 1 16
Q ss_pred hcCCCcHHHHHHHHHHHHHCCChHHHHH--HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 153 SVRQETSRLLGNLAWAYMQKTNFMAAEV--VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~--~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.++|++..+...||.++.+.|+..-|.+ .++.|++++|+++. |+.||.++.++|+.++|.+.|..+++.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8889999999999999999998888888 89999999999998 999999999999999999999988876
No 83
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.23 E-value=2.8e-10 Score=87.91 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
++++.+|..+..+|++++|+..|+.++..+|++. .......+|.++.+.|++++|+..|++++...|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------- 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------- 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC----------
Confidence 5677788888888888888888888888777531 12344557888888888888888888888765411
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
|..+.++.++|.++..+|++++|+.+|+++++..|++..
T Consensus 73 -------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 73 -------------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred -------------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 112456788888888888888888888888888887764
No 84
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=7.3e-10 Score=92.50 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=86.6
Q ss_pred HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHH
Q 022442 88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAW 167 (297)
Q Consensus 88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~ 167 (297)
.....+++.........+|.+|...|++++|+.+|++++++.|.. ++.+.++.++|.
T Consensus 24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~~~~~~~~~la~ 80 (172)
T PRK02603 24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----------------------NDRSYILYNMGI 80 (172)
T ss_pred HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----------------------chHHHHHHHHHH
Confidence 344444443233456778999999999999999999999875410 112458899999
Q ss_pred HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCC--------------HHHHHHHHHHHHhc
Q 022442 168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR--------------YNEARSVLEDVLYG 221 (297)
Q Consensus 168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~--------------~~eA~~~~~~al~~ 221 (297)
+|..+|++++|+.+|++++.+.|++.. +.++|.++...|+ +++|+.++++++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998 8899999999887 45555555555554
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=5e-11 Score=83.94 Aligned_cols=64 Identities=30% Similarity=0.384 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT-RYNEARSVLEDVLYG 221 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g-~~~eA~~~~~~al~~ 221 (297)
++.++.++|.++..+|++++|+.+|+++++++|+++. ++++|.++..+| ++++|+..++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999998 999999999999 799999999999986
No 86
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.22 E-value=3.9e-10 Score=105.00 Aligned_cols=96 Identities=16% Similarity=0.038 Sum_probs=87.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc
Q 022442 33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC 112 (297)
Q Consensus 33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~ 112 (297)
..-+..++..|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+..+++++.++|+++ ..++.+|.+|..+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~--~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA--KAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHh
Confidence 34456677899999999999999999999999999999999999999999999999999999853 4566689999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 022442 113 GKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 113 g~~~eAi~~~~~al~~~p 130 (297)
|++++|+..|++++++.|
T Consensus 84 g~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 84 EEYQTAKAALEKGASLAP 101 (356)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 999999999999999865
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=3.9e-10 Score=93.68 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCc
Q 022442 79 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 158 (297)
Q Consensus 79 ~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 158 (297)
+..+.+.+...+...+.+........+|.++...|++++|+..|++++.+.+.. ++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------------------~~~ 71 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----------------------YDR 71 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----------------------hhh
Confidence 344444444444455543344556668999999999999999999999885410 113
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHH-------HcCCHHHHHHHHHHHH
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLI-------KRTRYNEARSVLEDVL 219 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~-------~~g~~~eA~~~~~~al 219 (297)
+.++.++|.+|..+|++++|+.+|++++.++|++.. +.++|.++. .+|++++|+..+++++
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 458999999999999999999999999999999998 889999998 7888776655555444
No 88
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.22 E-value=1.2e-09 Score=110.68 Aligned_cols=150 Identities=15% Similarity=0.042 Sum_probs=115.7
Q ss_pred cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-
Q 022442 58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN- 136 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~- 136 (297)
.+|.+..++..|..++...|++++|++.++.+++.+|+. ..+++.+|.++.+.++++++..+ +++.+.+...-+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 578888888888888888888888888888888888873 34556677888888888888877 7777755432111
Q ss_pred -CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHH
Q 022442 137 -GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV 214 (297)
Q Consensus 137 -~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~ 214 (297)
-........ -+++..+++.||.||..+|++++|...|+++|+++|+|+. ..|+|..|... ++++|+.+
T Consensus 102 ve~~~~~i~~---------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 102 VEHICDKILL---------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred HHHHHHHHHh---------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 001111111 1234558999999999999999999999999999999998 88999999999 99999999
Q ss_pred HHHHHhc
Q 022442 215 LEDVLYG 221 (297)
Q Consensus 215 ~~~al~~ 221 (297)
+.+++..
T Consensus 172 ~~KAV~~ 178 (906)
T PRK14720 172 LKKAIYR 178 (906)
T ss_pred HHHHHHH
Confidence 9999875
No 89
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.8e-10 Score=104.08 Aligned_cols=180 Identities=17% Similarity=0.117 Sum_probs=149.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH----------HHHHHHHH
Q 022442 38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE----------SLDNVLID 107 (297)
Q Consensus 38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~----------~l~~~L~~ 107 (297)
+....|+.++|...--..+++++.+.++++.-|.++.-.++.+.|+..|++++.++|+.... .....-|+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 45578999999999999999999999999999999999999999999999999999973110 01112356
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
-..+.|++.+|.++|..+|.+.|.... .++..+.|.+.+...+|+..+|+.-...|+.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~----------------------~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKK----------------------TNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccc----------------------hhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 668999999999999999999874211 1345789999999999999999999999999
Q ss_pred hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 022442 188 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLL 240 (297)
Q Consensus 188 ~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~ 240 (297)
++|.... +..-|.|+..++++++|.+.|+++.+... ++.....+.+|...|.
T Consensus 316 iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~-s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 316 IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK-DCEIRRTLREAQLALK 368 (486)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHH
Confidence 9999998 78889999999999999999999998732 2444455555555555
No 90
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.21 E-value=6e-09 Score=108.69 Aligned_cols=233 Identities=11% Similarity=0.060 Sum_probs=155.4
Q ss_pred ccccchhhhhhhhhcC--CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHCCChHHHH
Q 022442 10 IFSSKKEDLFHVIHKV--PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAIN----AGDRVDSALKDMAVVMKQLDRSEEAI 83 (297)
Q Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~Lg~~l~~~g~~~eAi 83 (297)
+......+.|..|.+. .++...|..+...+...|++++|..++..... ..|+ ..++..|-..|.+.|++++|.
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHH
Confidence 3344556677777554 34455677777778888999999999888765 3455 356777888888999999999
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hchhhhhc---------CcchhHHhhhhhhHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--IYQGEAFN---------GKPTKTARSHGKKFQV 152 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~--~p~~~~~~---------~~~~~~~~~~~~~~~~ 152 (297)
++|+.+.+.+... ....++.+...|.+.|++++|+.+|++..+. .|+...|+ +.......-+......
T Consensus 600 elf~~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9998888765321 2345667788888999999999999888775 23322222 1100000000000001
Q ss_pred hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCC---
Q 022442 153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM--IDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGR-IPGC--- 226 (297)
Q Consensus 153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~--~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~~-~~~~--- 226 (297)
.+.| +..+++.|..+|.+.|++++|+.+|++..+ +.|+...|..|...|.+.|++++|..++++..... .|+.
T Consensus 679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 1222 355788899999999999999999998865 46766668888999999999999999999877642 1111
Q ss_pred -------cchhhHHHHHHHHHHHHhc
Q 022442 227 -------EDGRTRKRAEELLLELESK 245 (297)
Q Consensus 227 -------~~~~~~~~a~~~l~~~~~~ 245 (297)
.....++.|..++..+...
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1244566677777777543
No 91
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.21 E-value=6.4e-10 Score=107.98 Aligned_cols=122 Identities=15% Similarity=0.071 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--------hHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHHcC
Q 022442 44 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR--------SEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCG 113 (297)
Q Consensus 44 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~--------~~eAi~~~~~al~~--~P~~~~~~l~~~L~~ly~~~g 113 (297)
+...|+.+|++|++++|+++.++-.++.++..... ...+.+..++++.+ .|.++ ..+..+|.++...|
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~--~~~~ala~~~~~~g 434 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP--RIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh--HHHHHHHHHHHhcC
Confidence 37789999999999999999999988887765432 33444555555554 44332 45556677777889
Q ss_pred CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
++++|...+++|+.++| +..++..+|.++...|++++|++.|++|+.++|.++
T Consensus 435 ~~~~A~~~l~rAl~L~p---------------------------s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM---------------------------SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CHHHHHHHHHHHHHcCC---------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999998854 245788899999999999999999999999999888
Q ss_pred H
Q 022442 194 K 194 (297)
Q Consensus 194 ~ 194 (297)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 6
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=4.7e-09 Score=93.54 Aligned_cols=190 Identities=17% Similarity=0.186 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--h-HHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S-QESLDNVLI 106 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~-~~~l~~~L~ 106 (297)
..|+..... +...+.++|+.+|-..++.+|..-+++..||.++.+.|..|.||.+-+.++.. |+- . ......-||
T Consensus 37 r~Yv~GlNf-LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNF-LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHH-HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 345555444 45888999999999999999999999999999999999999999987776654 541 1 122335588
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhch-hhhhc--CcchhHHhhhhhhHH-----HhcCCCc-----HHHHHHHHHHHHHCC
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQ-GEAFN--GKPTKTARSHGKKFQ-----VSVRQET-----SRLLGNLAWAYMQKT 173 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~-~~~~~--~~~~~~~~~~~~~~~-----~~l~p~~-----~~~l~nLg~~y~~~g 173 (297)
.=|+..|-+|.|..+|...+..-.. ..+.- -......+...+... ..+.++. +..+-.|+..+....
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 8999999999999999998874110 00100 000011111111111 2233322 345667899999999
Q ss_pred ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+.|...+++|++-+|++.. -+-||.+....|+|+.|+..++.+++-
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 999999999999999999998 788999999999999999999999986
No 93
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=3.5e-09 Score=91.49 Aligned_cols=160 Identities=19% Similarity=0.105 Sum_probs=131.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~ 114 (297)
...+++..|+.+-|..++.+.-...|+.......-|+.+-..|.+++|+++|+..+.-+|.+.. .+---..+...+|+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v--~~KRKlAilka~GK 135 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV--IRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH--HHHHHHHHHHHcCC
Confidence 3445667788888888888766667888888888888888889999999999888888887432 22112234578888
Q ss_pred HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 115 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 115 ~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
--+||+.+.+-++..+ .++++|..|+.+|...|+|+.|.-||++.+-++|-++-
T Consensus 136 ~l~aIk~ln~YL~~F~--------------------------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l 189 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFM--------------------------NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL 189 (289)
T ss_pred cHHHHHHHHHHHHHhc--------------------------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH
Confidence 8888888888777643 46789999999999999999999999999999999998
Q ss_pred -HhHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 022442 195 -ACNLGLCLIKRT---RYNEARSVLEDVLYGR 222 (297)
Q Consensus 195 -~~nLg~~l~~~g---~~~eA~~~~~~al~~~ 222 (297)
+..||.++..+| +++-|..+|.+++..+
T Consensus 190 ~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 190 YFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 889999998887 7788999999999973
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.1e-09 Score=101.33 Aligned_cols=212 Identities=15% Similarity=0.009 Sum_probs=143.1
Q ss_pred ccccccchhhhhhhhhcCCCCCc--HHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHH
Q 022442 8 KKIFSSKKEDLFHVIHKVPAGDG--PYVRAKHAQLVQ--KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI 83 (297)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi 83 (297)
|.+.+...-|...|..+-.+... +..++-.++..+ +++..|-.+-..|+..+--++.++.+-|.+-...|++++|.
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence 34445555666677776643222 233333344444 47889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhh-------HH-HhcC
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK-------FQ-VSVR 155 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-------~~-~~l~ 155 (297)
+.|+.++.-+.. ....++ ++|..+..+|+.++|+++|-+.-.+.-...........+.....+. .+ ..+-
T Consensus 511 ~~ykeal~ndas-c~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 511 EFYKEALNNDAS-CTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred HHHHHHHcCchH-HHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 999999976554 222344 4788899999999999999987665321110000000000000000 01 2555
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|++|.++..||.+|.+.|+-..|..|+-.....-|-|.. .-.||..|+...-.++|+.+|+++--.
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777776 666777777777777777777776654
No 95
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.17 E-value=6e-09 Score=93.97 Aligned_cols=195 Identities=23% Similarity=0.231 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAG----D--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQES 100 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p--~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~ 100 (297)
-|..++..+...|++++|..+|.++.... . ....++...+.++.+. ++++|+..|++++.+.-. .....
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 37778888889999999999999998632 1 1244577778887776 999999999998875321 11223
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 101 LDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 101 l~~~L~~ly~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
....+|.+|... |++++|+++|++|+++.... +... .-...+.++|.++.++|+|++|+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--------------~~~~------~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--------------GSPH------SAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--------------T-HH------HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--------------CChh------hHHHHHHHHHHHHHHhCCHHHHH
Confidence 456689999999 99999999999999984211 1100 01247789999999999999999
Q ss_pred HHHHHHHHhCCCc------H-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCC
Q 022442 180 VVYQKAQMIDPDA------N-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQP 247 (297)
Q Consensus 180 ~~y~~Al~~~P~~------~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 247 (297)
..|+++....-++ . . ++..+.|++..|+...|...+++..... |...+..+..-+..++.++...++
T Consensus 176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~-~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD-PSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS-TTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHhCCH
Confidence 9999998854322 1 2 4577889999999999999999998762 233456666778888888875443
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.16 E-value=6e-10 Score=112.74 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
+.-.+...+...+++++|+..++.++..+|+....++.+|.++.+.+++.++... .++...+.+.. + ...-.++.
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~--~-~~ve~~~~ 107 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK--W-AIVEHICD 107 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc--h-hHHHHHHH
Confidence 4555566677899999999999999999999999999999999999999999988 77777665321 1 11222333
Q ss_pred HcCCHHHHHHH-HHHHHHhhchhhhhcCcchhHHhhhhhhHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 111 KCGKVEEQIEM-LKRKLRLIYQGEAFNGKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 111 ~~g~~~eAi~~-~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
..|++-+-..+ +..|.-... .+...+. ...+. +.++|+++.+++|+|..|... +.++|+.++++|+.
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk-----~g~~~ka----~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAK-----LNENKKL----KGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHH-----cCChHHH----HHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 33443333321 111111100 0000010 11111 688899999999999999999 99999999999998
Q ss_pred hCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 188 IDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 188 ~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
. ++...++.++..++.+.+..
T Consensus 178 ~-------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 178 R-------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred H-------------HHhhhcchHHHHHHHHHHhc
Confidence 6 55566777777777777775
No 97
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.15 E-value=3.2e-09 Score=86.12 Aligned_cols=124 Identities=16% Similarity=0.083 Sum_probs=99.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKK 111 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~ 111 (297)
....+..++...+...+++.+...|+. ..+...+|.++...|++++|++.|+.++...|+.. .......|+.++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ 97 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 334446899999999999999999988 45677899999999999999999999999877532 12334558999999
Q ss_pred cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
+|++++|+..++....- +-.+.++..+|.+|..+|++++|+..|++||
T Consensus 98 ~~~~d~Al~~L~~~~~~---------------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQIPDE---------------------------AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHhccCc---------------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999998662110 0123466779999999999999999999985
No 98
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.13 E-value=1.7e-08 Score=89.01 Aligned_cols=180 Identities=12% Similarity=-0.013 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHH---HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSA---LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLI 106 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L~ 106 (297)
..+..+...+..|++++|+..|++.+...|..+.+ ...+|.++.+++++++|+..++++++.+|++... .+.+.+|
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 35555666678999999999999999999987655 4899999999999999999999999999974322 3445566
Q ss_pred HHHHHcC------------------CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442 107 DLYKKCG------------------KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA 168 (297)
Q Consensus 107 ~ly~~~g------------------~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~ 168 (297)
.++...+ ...+|+..+++.++..|...... .++ ... ..+.-..+.--...|..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~-----~A~---~rl-~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT-----DAT---KRL-VFLKDRLAKYELSVAEY 184 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH-----HHH---HHH-HHHHHHHHHHHHHHHHH
Confidence 5544443 14678899999999987542211 000 000 00000112233578999
Q ss_pred HHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
|.+.|+|..|+.-++.+++..|+.+ + ..-|+..|..+|..++|..+...+.
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 9999999999999999999999886 3 5678999999999999988776554
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.13 E-value=1e-09 Score=79.11 Aligned_cols=97 Identities=27% Similarity=0.317 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 145 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~ 145 (297)
++.+|.++..+|++++|+..+++++...|.+. .+...+|.++...|++++|+..+++++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------------- 65 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDP--------------- 65 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------
Confidence 44455555555555555555555555555421 2233345555555555555555555554422
Q ss_pred hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
.+..++..+|.++...|++++|..++.+++...|
T Consensus 66 -----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 66 -----------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -----------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 1223444555555555555555555555555444
No 100
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.12 E-value=6.5e-09 Score=105.04 Aligned_cols=183 Identities=11% Similarity=0.014 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCcchHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLID 107 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~--~P~~~~~~l~~~L~~ 107 (297)
..+..+...+.+.|++++|...|+.. .+.+..+|..|...|.+.|++++|+.+|++.... .|+ ...++.+..
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd---~~t~~~ll~ 333 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID---QFTFSIMIR 333 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Confidence 34444555566666666666666543 2334455666666666666666666666665442 333 123344555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhch-h-hhhcCcchhHHhhh------hhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQ-G-EAFNGKPTKTARSH------GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~-~-~~~~~~~~~~~~~~------~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
.|.+.|++++|.+++..+++...+ + ..++. +....... ...|....+| +..+|+.|...|.+.|+.++|+
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~-Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTA-LVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHH-HHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHH
Confidence 566666666666666666554311 1 01110 00000000 0011111112 3345666666666666666666
Q ss_pred HHHHHHHH--hCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 180 VVYQKAQM--IDPDANKACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 180 ~~y~~Al~--~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
..|++.++ +.||...+..+..++.+.|+.++|..+|+....
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 66666554 345555555555666666666666666666554
No 101
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.11 E-value=4.7e-10 Score=78.06 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=42.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
+|..+.+.|++++|+.+|+++++.. |+++.++..+|.++.++|++++|+..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--------------------------PDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--------------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566677777777777777777653 34556777777777777777777777777
Q ss_pred HHHhCCCcH
Q 022442 185 AQMIDPDAN 193 (297)
Q Consensus 185 Al~~~P~~~ 193 (297)
+++++|+++
T Consensus 57 a~~~~P~~p 65 (65)
T PF13432_consen 57 ALELDPDNP 65 (65)
T ss_dssp HHHHSTT-H
T ss_pred HHHHCcCCC
Confidence 777777664
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=5.6e-09 Score=100.16 Aligned_cols=184 Identities=15% Similarity=0.057 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
++|.-..=....+++...+...++.++..|.+++++...|..+..+|+.++|....+..+..++.. +.=|+ .+|.+++
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwH-v~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWH-VLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHH-HHHHHHh
Confidence 344333334467899999999999999999999999999999999999999999999999988873 23344 4788999
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcC---cchhHHhhhhh-----hHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNG---KPTKTARSHGK-----KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~---~~~~~~~~~~~-----~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
..++|++||.+|+.|+.+.|++..... .+....+.... ...+++.|..-..|..++.++...|++..|....
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998653321110 00000000000 0113444555555556666666666666665555
Q ss_pred HHHHHhC---CCcHH-H-----hHHHHHHHHcCCHHHHHHHHH
Q 022442 183 QKAQMID---PDANK-A-----CNLGLCLIKRTRYNEARSVLE 216 (297)
Q Consensus 183 ~~Al~~~---P~~~~-~-----~nLg~~l~~~g~~~eA~~~~~ 216 (297)
..-.... |+... - .--...+.+.|.+++|.+.+.
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4444332 32221 1 112334455555555555543
No 103
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.10 E-value=5.2e-09 Score=105.74 Aligned_cols=201 Identities=11% Similarity=0.021 Sum_probs=149.8
Q ss_pred cchhhhhhhhhcC--CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 13 SKKEDLFHVIHKV--PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 13 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
......+..+.+. +++...+..+...+.+.|++++|...|++..+ | +..+|..|...|.+.|+.++|+++|++..
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566555554 44555777788888899999999999987654 3 34578999999999999999999999987
Q ss_pred hh--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hchhhhhcCcchhHHhhhh---h---hHH-HhcCCCc
Q 022442 91 GL--CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL---IYQGEAFNGKPTKTARSHG---K---KFQ-VSVRQET 158 (297)
Q Consensus 91 ~~--~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~~~~~~~~~---~---~~~-~~l~p~~ 158 (297)
.. .|+ ...++.+...+...|.+++|..+|+...+. .|....|+... ......+ + .+. ..+.|+
T Consensus 419 ~~g~~Pd---~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li-~~l~r~G~~~eA~~~~~~~~~~p~- 493 (697)
T PLN03081 419 AEGVAPN---HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI-ELLGREGLLDEAYAMIRRAPFKPT- 493 (697)
T ss_pred HhCCCCC---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH-HHHHhcCCHHHHHHHHHHCCCCCC-
Confidence 64 454 234555778889999999999999998763 23222332100 0000001 1 111 223343
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+|..|..++...|+++.|...+++.+++.|++.. +..|+.+|.+.|++++|..+++.....
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 457999999999999999999999999999999887 888999999999999999999998865
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.10 E-value=8.4e-09 Score=83.68 Aligned_cols=121 Identities=18% Similarity=0.094 Sum_probs=95.8
Q ss_pred HCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442 75 QLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 153 (297)
Q Consensus 75 ~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (297)
..++...+.+.++.++..+|+... ......++.++...|++++|+..|++++...|+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------------- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------------- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence 688999999999999999997522 234466899999999999999999999986431100
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.+.+...||.++..+|++++|+..++.+ .-.+-.+. +..+|.+|..+|++++|+..|++++
T Consensus 84 ----~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 ----KPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1236788999999999999999999762 22222334 5678999999999999999999875
No 105
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=1.2e-08 Score=87.58 Aligned_cols=175 Identities=21% Similarity=0.141 Sum_probs=124.4
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHH
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNV 104 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~ 104 (297)
+...+..+...+..|++.+|+..|++.+...|. .+.+.+.+|.++...|++++|+..+++++...|++.. ..+.+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 345777788889999999999999999987665 5788999999999999999999999999999997421 234445
Q ss_pred HHHHHHH-----------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442 105 LIDLYKK-----------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 105 L~~ly~~-----------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g 173 (297)
+|..+.. ++...+|+..|+..+...|.+.... .++.... .+....+.--..+|..|...|
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-----~A~~~l~----~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE-----EAKKRLA----ELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH-----HHHHHHH----HHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH-----HHHHHHH----HHHHHHHHHHHHHHHHHHHcc
Confidence 6665444 3445689999999999887542111 0000000 000011223466899999999
Q ss_pred ChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHH
Q 022442 174 NFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~ 212 (297)
+|..|+.-|+.+++..|+.+ . +.-|+.+|.++|..+.|.
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999987 2 567899999999988554
No 106
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.09 E-value=3.8e-08 Score=102.76 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
|..+.......|+++.|..++++..+.+.. +...+..|-..|.+.|+.++|..+|+.+...+.. ++...++.+...|.
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~ 518 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Confidence 433344444555555555555555443211 2334444555555555555555555555443221 01123334445555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 022442 111 KCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~ 127 (297)
+.|++++|+.+|++...
T Consensus 519 k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 55555555555555443
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=3.1e-09 Score=105.90 Aligned_cols=215 Identities=17% Similarity=0.159 Sum_probs=154.8
Q ss_pred CCcccccccchhhhhhhhhcCCCCCcHHHHHHHH-----HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCh
Q 022442 5 SNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHA-----QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS 79 (297)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~ 79 (297)
|+|++.-++...-.+|.+.++-....-.++.... -...++...|...+-++++++|..+.++..||.+|....+.
T Consensus 429 s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm 508 (1238)
T KOG1127|consen 429 SFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDM 508 (1238)
T ss_pred hcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 3455555555555555555553222111111111 12456788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh----hc-Cc-chhHHhhhhh--hHH
Q 022442 80 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA----FN-GK-PTKTARSHGK--KFQ 151 (297)
Q Consensus 80 ~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~----~~-~~-~~~~~~~~~~--~~~ 151 (297)
..|..+|+++.+++|.++ ...-.+++.|.....+++|..+.-.+-+..|.... .. |. ..+....|+. .++
T Consensus 509 ~RA~kCf~KAFeLDatda--eaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDA--EAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHhcCCchhh--hhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 999999999999999854 34444789999999999999986666665553211 11 10 0010111111 133
Q ss_pred --HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 152 --VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 152 --~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.++|.+.+.|..||.+|-..|++.-|++.|.+|..++|++.. .+..+......|.|.+|++.+..++..
T Consensus 587 sALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 587 SALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5677888888999999999999999999999999999998887 888888888889999999988888764
No 108
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=6.5e-10 Score=81.56 Aligned_cols=83 Identities=31% Similarity=0.406 Sum_probs=70.6
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
.+|++++|+..++++++..|.+ | +..++.++|.||.++|+|++|+.++++ +..+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~-----------------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~ 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN-----------------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT-----------------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC-----------------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence 3689999999999999986521 1 234678899999999999999999999 88999
Q ss_pred CcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 191 DANK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
.+.. .+.+|.|+.++|++++|+.+++++
T Consensus 56 ~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 9987 778899999999999999999875
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.07 E-value=3.7e-08 Score=89.98 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=152.8
Q ss_pred hhhhhcCCCCCcHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----
Q 022442 19 FHVIHKVPAGDGPYVRAK--HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL---- 92 (297)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~---- 92 (297)
-..+.+.+++++-.+.+. .+.+.+||++.|..-..+++...|.++..+.-.-.+|...|++.+....+.+..+.
T Consensus 141 L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~ 220 (400)
T COG3071 141 LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS 220 (400)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence 367778877777555554 56778999999999999999999999999999999999999999988766533211
Q ss_pred ----------------------------------CCcc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh-
Q 022442 93 ----------------------------------CSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF- 135 (297)
Q Consensus 93 ----------------------------------~P~~--~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~- 135 (297)
-|.. .+..+...++.-+.++|++++|.+..+++++...++...
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~ 300 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR 300 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence 1110 001222334566788999999999999999986433211
Q ss_pred -cCc--chhHHhhhhhh--HHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHH
Q 022442 136 -NGK--PTKTARSHGKK--FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNE 210 (297)
Q Consensus 136 -~~~--~~~~~~~~~~~--~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~e 210 (297)
.+. ..+ .....+. ..+...|+++.++..||..|...+.|.+|..+|+.|++..|+..++..+|.++.++|+..+
T Consensus 301 ~~~~l~~~d-~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 301 LIPRLRPGD-PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHhhcCCCC-chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 000 000 0000011 1145568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 022442 211 ARSVLEDVLYG 221 (297)
Q Consensus 211 A~~~~~~al~~ 221 (297)
|.+++++++..
T Consensus 380 A~~~r~e~L~~ 390 (400)
T COG3071 380 AEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 110
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-08 Score=90.04 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCc
Q 022442 79 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET 158 (297)
Q Consensus 79 ~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 158 (297)
.++-+..++..+..+|+++. .|. .||.+|..+|+++.|...|++|+++. |++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~e-gW~-~Lg~~ym~~~~~~~A~~AY~~A~rL~--------------------------g~n 189 (287)
T COG4235 138 MEALIARLETHLQQNPGDAE-GWD-LLGRAYMALGRASDALLAYRNALRLA--------------------------GDN 189 (287)
T ss_pred HHHHHHHHHHHHHhCCCCch-hHH-HHHHHHHHhcchhHHHHHHHHHHHhC--------------------------CCC
Confidence 55666778888999998653 344 48999999999999999999999985 467
Q ss_pred HHHHHHHHHHHHHC---CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 022442 159 SRLLGNLAWAYMQK---TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE 227 (297)
Q Consensus 159 ~~~l~nLg~~y~~~---g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~ 227 (297)
++++..+|.++..+ ....++...+++++.+||++.. ..-||..++..|+|.+|...++..+...+++.+
T Consensus 190 ~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 190 PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 78888899888655 3567899999999999999998 888999999999999999999999998544444
No 111
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.06 E-value=2.6e-08 Score=95.88 Aligned_cols=154 Identities=19% Similarity=0.124 Sum_probs=97.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
.+..||...|...+.+|+..+|+..+.|..--.+......+++|..+|.++....|. +.++.--+.+...++..++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT---eRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT---ERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc---chhhHHHhHHHHHhhhHHHH
Confidence 345577777777777777777777777766666666677777777777777666664 12333334455666777777
Q ss_pred HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhH
Q 022442 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN 197 (297)
Q Consensus 119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~n 197 (297)
+.+++++|+..| +++..+..+|.++.++++.+.|...|..-++.=|+.+. |..
T Consensus 671 ~rllEe~lk~fp--------------------------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 671 LRLLEEALKSFP--------------------------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred HHHHHHHHHhCC--------------------------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 777777777654 44555666666666666666666666666666666665 666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 198 LGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 198 Lg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|+.+-.+.|..-.|..+++++...
T Consensus 725 LakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhc
Confidence 666666666666666666555554
No 112
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=5.4e-09 Score=80.66 Aligned_cols=102 Identities=15% Similarity=0.022 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVL 105 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L 105 (297)
..++..+..+...|++++|+..|.+++..+|++ +.+++.+|.++.+.|++++|+..|+.++..+|++. .......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356778888889999999999999999988876 67899999999999999999999999999998742 12345668
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhch
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQ 131 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~ 131 (297)
|.++...|++++|+..++++++..|.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999998763
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=2e-08 Score=90.26 Aligned_cols=231 Identities=17% Similarity=0.140 Sum_probs=165.3
Q ss_pred ccccccchhhhhhhhhcCCCCCcH----HHHHHH------------HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 022442 8 KKIFSSKKEDLFHVIHKVPAGDGP----YVRAKH------------AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAV 71 (297)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~ 71 (297)
|.|+-.+.+.-|+.+.+..++... .-.+.. .+.-.||...|+......|+..|=+++.+..-+.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 556677777788666666433322 211111 1234589999999999999999999998889999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhc--CcchhHHhhhhh
Q 022442 72 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFN--GKPTKTARSHGK 148 (297)
Q Consensus 72 ~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~--~~~~~~~~~~~~ 148 (297)
+|...|....||.-++.+-++..++ ....+-.+.++...|+.+.++...++.|+++|+-. .|. -.+.++..+...
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887763 34555578889999999999999999999988432 111 001111111100
Q ss_pred ---------------h--HHHhcCCCcHHH----HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442 149 ---------------K--FQVSVRQETSRL----LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT 206 (297)
Q Consensus 149 ---------------~--~~~~l~p~~~~~----l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g 206 (297)
. ..+.-+|+-+.+ +.-+-.|+..-|++.+|+....++|+++|++.. ++..+.+|+-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 0 013445654333 344788999999999999999999999999998 999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 022442 207 RYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLL 240 (297)
Q Consensus 207 ~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~ 240 (297)
.|++|+.-|+++.+.+..+..-...+++|..+..
T Consensus 356 ~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESNTRAREGLERAKRLKK 389 (504)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 9999999999999973222222233444544444
No 114
>PLN03077 Protein ECB2; Provisional
Probab=99.03 E-value=2.1e-08 Score=103.63 Aligned_cols=200 Identities=10% Similarity=0.004 Sum_probs=138.2
Q ss_pred cchhhhhhhhhcC--CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 13 SKKEDLFHVIHKV--PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 13 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
...++.+..+.+. ..+...+..+...+.+.|+.++|...|... +.+..+|..|...|.+.|+.++|+++|++..
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344455444443 233334555566777888888888888765 4455678888888888888888888888876
Q ss_pred hh--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hchhhhhcC------cchhHHhhhhhhHH-HhcCCCc
Q 022442 91 GL--CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL---IYQGEAFNG------KPTKTARSHGKKFQ-VSVRQET 158 (297)
Q Consensus 91 ~~--~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~---~p~~~~~~~------~~~~~~~~~~~~~~-~~l~p~~ 158 (297)
.. .|+. ..++.+...+.+.|++++|..+|++..+. .|.-..|+. +..+.... .+.+. +.++|+
T Consensus 582 ~~g~~Pd~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA-~~~~~~m~~~pd- 656 (857)
T PLN03077 582 ESGVNPDE---VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA-YNFINKMPITPD- 656 (857)
T ss_pred HcCCCCCc---ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH-HHHHHHCCCCCC-
Confidence 63 4542 23344556778888888888888887743 232223320 00000000 00111 245565
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+|..|-.++...|+.+.++...+++++++|++.. +..|+.+|...|++++|..+.+...+.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 567888777888999999999999999999999998 888999999999999999999988765
No 115
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.3e-08 Score=90.35 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH-HcC--CHHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK-KCG--KVEEQI 119 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~-~~g--~~~eAi 119 (297)
...+.-+.-++..++.+|++.+-|..||.+|..+|++..|..+|++++++.|+++....+ ++.++. +.| ...++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g--~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLG--LAEALYYQAGQQMTAKAR 213 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCcccHHHH
Confidence 346778888999999999999999999999999999999999999999999986543222 443333 333 467889
Q ss_pred HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHH
Q 022442 120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA 195 (297)
Q Consensus 120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~ 195 (297)
..++++++++ |.+..+++.||..+++.|+|.+|+..++..++..|.+..+
T Consensus 214 ~ll~~al~~D--------------------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 214 ALLRQALALD--------------------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHhcC--------------------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999884 4567899999999999999999999999999999877653
No 116
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.02 E-value=5.1e-09 Score=75.39 Aligned_cols=98 Identities=22% Similarity=0.188 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
.+...+..+...|++++|+..++++++..|....++..+|.++...|++++|+..++.++...|.+. .....++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHH
Confidence 3556677778899999999999999999999999999999999999999999999999999999743 35556889999
Q ss_pred HcCCHHHHHHHHHHHHHhhc
Q 022442 111 KCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p 130 (297)
..|++++|...++++++..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999988754
No 117
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=4e-09 Score=95.39 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH-HHHHHHHHHHHhc
Q 022442 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY-NEARSVLEDVLYG 221 (297)
Q Consensus 156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~-~eA~~~~~~al~~ 221 (297)
+.++.+++.++.+++++|+|++|+..+++|+..+|++++ +.|++.+...+|+. +.+.+++.++...
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 346678899999999999999999999999999999998 89999999999988 5555566665554
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.02 E-value=5.1e-09 Score=104.39 Aligned_cols=202 Identities=13% Similarity=-0.012 Sum_probs=135.4
Q ss_pred hhhhhhhh----hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 15 KEDLFHVI----HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 15 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
.+.+||.+ +.-+.-..+|..+|+++-.--|...|..+|++|..+||.+.++....+..|.....+++|..+.-.+-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34555333 33344455788899988755688889999999999999988887777777777777777776654444
Q ss_pred hhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh--------hhhc--CcchhHHhhhhhhH--HHhcCCC
Q 022442 91 GLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG--------EAFN--GKPTKTARSHGKKF--QVSVRQE 157 (297)
Q Consensus 91 ~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~--------~~~~--~~~~~~~~~~~~~~--~~~l~p~ 157 (297)
+..|... ..+|.. .|-.|.+.+++-.|+..++.+++..|.+ .+|. |+... ..+.| ...++|+
T Consensus 554 qka~a~~~k~nW~~-rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~----AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQ-RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSH----ALKVFTKASLLRPL 628 (1238)
T ss_pred hhchHHHHHhhhhh-ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceeh----HHHhhhhhHhcCcH
Confidence 4444211 112222 4555666666666666666666665532 1111 11000 01122 1345667
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+--+.+-.+.....+|+|.+|+..+...+....+-.. ...||.++++.-...-+...+.+++..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~ 693 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF 693 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 7778888999999999999999999999998777776 778999999887766666666776654
No 119
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.01 E-value=1.7e-09 Score=79.37 Aligned_cols=81 Identities=27% Similarity=0.282 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~--~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
+|+++.|+.+|++++..+|. +...++.+|.++.++|++++|+..+++ ...+|.+ ......+|.++.++|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHH
Confidence 68999999999999999984 567788899999999999999999999 7777753 244556799999999999999
Q ss_pred HHHHHH
Q 022442 120 EMLKRK 125 (297)
Q Consensus 120 ~~~~~a 125 (297)
.+|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 120
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.01 E-value=1e-09 Score=76.33 Aligned_cols=58 Identities=31% Similarity=0.352 Sum_probs=55.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+|.++.+.|++++|+.+|+++++.+|+++. ++.+|.++..+|++++|+.+|++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999 999999999999999999999999987
No 121
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.01 E-value=9.7e-09 Score=91.50 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+++-||.+|...|++++|+..|++++...|+++ + ++.+|.++..+|++++|..+|++++..
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555443 2 444555555555555555555555543
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=3.4e-08 Score=84.75 Aligned_cols=137 Identities=21% Similarity=0.190 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
.++.++..|..+.+.|++.+|+..|+.++...|.. ........+|.++.+.|++++|+..+++.++..|..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-------- 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-------- 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 46788999999999999999999999999999963 223455668999999999999999999999987732
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC-----------CChHHHHHHHHHHHHhCCCcHH---H-----------
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-----------TNFMAAEVVYQKAQMIDPDANK---A----------- 195 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~-----------g~~~eA~~~y~~Al~~~P~~~~---~----------- 195 (297)
|..+.+++.+|.++..+ +...+|+..|+..+...|++.- .
T Consensus 76 ---------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 76 ---------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred ---------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 22345777888876554 3456999999999999999852 1
Q ss_pred ----hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 196 ----CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 196 ----~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+|..|.+.|.+..|+..++.++..
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45799999999999999999999996
No 123
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.01 E-value=1.7e-08 Score=79.20 Aligned_cols=108 Identities=24% Similarity=0.158 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 181 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~ 181 (297)
.+.++.++...|+.++|+.+|++++.....+ +.-.+++.++|.+|..+|++++|+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-----------------------~~~~~a~i~lastlr~LG~~deA~~~ 60 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSG-----------------------ADRRRALIQLASTLRNLGRYDEALAL 60 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-----------------------hHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3447888999999999999999999863211 11235889999999999999999999
Q ss_pred HHHHHHhCCC---cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q 022442 182 YQKAQMIDPD---ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL 238 (297)
Q Consensus 182 y~~Al~~~P~---~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~ 238 (297)
+++++...|+ +.. ...++.++...|+++||+..+-.++.. ....+.++...
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~------~~~~y~ra~~~ 115 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAE------TLPRYRRAIRF 115 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 9999999898 555 677899999999999999999888874 22255555544
No 124
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.01 E-value=4.4e-08 Score=88.35 Aligned_cols=143 Identities=24% Similarity=0.227 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC----cchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 44 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 44 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P----~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
++++|..+|.+ .|..|...|++++|.++|.++....- .......+...+.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~--------------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEK--------------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 67777777765 58889999999999999998755432 111122334456676555 999999
Q ss_pred HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCC--CcH---
Q 022442 120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-TNFMAAEVVYQKAQMIDP--DAN--- 193 (297)
Q Consensus 120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~-g~~~eA~~~y~~Al~~~P--~~~--- 193 (297)
.+|++++.+.- ..++.- .-+.++.++|.+|... |++++|+.+|++|+++.- +..
T Consensus 95 ~~~~~A~~~y~--------------~~G~~~------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a 154 (282)
T PF14938_consen 95 ECYEKAIEIYR--------------EAGRFS------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA 154 (282)
T ss_dssp HHHHHHHHHHH--------------HCT-HH------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHH--------------hcCcHH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence 99999999731 111110 0245789999999999 999999999999999732 222
Q ss_pred -H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 194 -K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 194 -~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
. ..++|.++..+|+|++|+..|+++...
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 468999999999999999999999875
No 125
>PRK15331 chaperone protein SicA; Provisional
Probab=98.99 E-value=2e-08 Score=82.18 Aligned_cols=112 Identities=19% Similarity=0.119 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
..|.-+..+|++++|..+|+-....+ |.+++.+..||.|+..+++|++|+.+|-
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d--------------------------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD--------------------------FYNPDYTMGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666688999999999888766653 3456788999999999999999999999
Q ss_pred HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhc
Q 022442 184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESK 245 (297)
Q Consensus 184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~ 245 (297)
.|..++++++. .+..|.||+.+|+.++|...|+.++.. +.+..-.++|..+|..+...
T Consensus 96 ~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~----~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 96 VAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER----TEDESLRAKALVYLEALKTA 154 (165)
T ss_pred HHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHcc
Confidence 99999999998 999999999999999999999999984 55555567888888888643
No 126
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.98 E-value=3.3e-09 Score=74.54 Aligned_cols=67 Identities=27% Similarity=0.188 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g-~~~eAi~~~~~al~~~p 130 (297)
++.+|..+|.++...|++++|+..|++++.++|+++ .++..+|.+|..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~--~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA--EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 355666777777777777777777777777777632 34455667777777 57777777777776644
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=8.2e-08 Score=83.16 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=109.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
-..|.+++|+++|...+..+|.+..++..--.++..+|+.-+||+.+...++..|.|. +.|+. |+.+|...|+|++|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~-EAW~e-LaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ-EAWHE-LAEIYLSEGDFEKAA 174 (289)
T ss_pred HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH-HHHHH-HHHHHHhHhHHHHHH
Confidence 3568999999999999999999999998888888999999999999999999999863 34544 899999999999999
Q ss_pred HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHHHhCCCcHH-H
Q 022442 120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ---KTNFMAAEVVYQKAQMIDPDANK-A 195 (297)
Q Consensus 120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~---~g~~~eA~~~y~~Al~~~P~~~~-~ 195 (297)
=||++.+-+.|. ++..+..+|.++.- ..++.-|..+|.++++++|.+.. +
T Consensus 175 fClEE~ll~~P~--------------------------n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 175 FCLEELLLIQPF--------------------------NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHcCCC--------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 999999988763 33344444544443 34788999999999999996665 6
Q ss_pred hHHHHH
Q 022442 196 CNLGLC 201 (297)
Q Consensus 196 ~nLg~~ 201 (297)
+.+-.|
T Consensus 229 ~GI~lc 234 (289)
T KOG3060|consen 229 FGIYLC 234 (289)
T ss_pred HHHHHH
Confidence 554333
No 128
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.95 E-value=1.4e-07 Score=90.88 Aligned_cols=203 Identities=15% Similarity=0.137 Sum_probs=159.0
Q ss_pred hhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 17 DLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
++|.......+....+.....+....+..++|+.+++.+++..|.....|..+|.++.++++.+.|.++|..-++.+|..
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 44544444444444565556666778999999999999999999999999999999999999999999999999999974
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc----------Ccc-------hhHHhhhhhh----------
Q 022442 97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN----------GKP-------TKTARSHGKK---------- 149 (297)
Q Consensus 97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~----------~~~-------~~~~~~~~~~---------- 149 (297)
. .++..|+.+=.+.|..-.|-.++.++.-.+|.+..+. |+. .+.....+..
T Consensus 719 i--pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 I--PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred c--hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 3 4666688888888999999999999988888653321 110 0000000000
Q ss_pred ---------HH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 150 ---------FQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 150 ---------~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
+. +.--..++.++...|..+....+++.|.+.|.+|+.++||+.+ |..+-..+...|.-++-.+++.+
T Consensus 797 e~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred ccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 00 1111357788999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHhc
Q 022442 218 VLYG 221 (297)
Q Consensus 218 al~~ 221 (297)
....
T Consensus 877 c~~~ 880 (913)
T KOG0495|consen 877 CETA 880 (913)
T ss_pred Hhcc
Confidence 8886
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.95 E-value=3.1e-08 Score=92.76 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=105.4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhh
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 146 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~ 146 (297)
..|-..+...+++++|+..++++.+.+|. +...++.++...++-.+|+..++++|+..|
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p---------------- 231 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENP---------------- 231 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------------
Confidence 34556677789999999999999999986 223478889999999999999999998644
Q ss_pred hhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 147 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 147 ~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
.+...+..-+..+...++++.|+.+.++++.+.|++.. |..|+.+|..+|++++|+..+..
T Consensus 232 ----------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 232 ----------QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred ----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 45668888999999999999999999999999999998 99999999999999999988764
No 130
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.95 E-value=1e-07 Score=91.71 Aligned_cols=248 Identities=15% Similarity=0.082 Sum_probs=166.6
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442 20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE 99 (297)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~ 99 (297)
.++.+.|.++.+.+-.|...-.-|+.++|..+-+.+++.++...-+|+.+|.++....+|+|||++|+.|+.+.|++ .
T Consensus 32 ~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN--~ 109 (700)
T KOG1156|consen 32 QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN--L 109 (700)
T ss_pred HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--H
Confidence 45667788888887777777778999999999999999999999999999999999999999999999999999984 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-Cc--------chhHHhhhhhhHHHhcC--CCc-----HHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-GK--------PTKTARSHGKKFQVSVR--QET-----SRLLG 163 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-~~--------~~~~~~~~~~~~~~~l~--p~~-----~~~l~ 163 (297)
.+..-|+.+..+.|+++-....-.+.+++.|..-++. +. ....+...-..+.-..+ |+. ...+.
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL 189 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 5666678888999999999999999999987432221 00 00000000111111111 222 23445
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH----HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHH---
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK----ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAE--- 236 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~----~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~--- 236 (297)
....++.+.|.+++|++.... ..|...+ ...-+.++.++|++++|..+|+..+..+|....-...+..+.
T Consensus 190 y~n~i~~E~g~~q~ale~L~~---~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 190 YQNQILIEAGSLQKALEHLLD---NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKI 266 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHh---hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Confidence 567777888998888776654 4444443 334689999999999999999999997332222122222222
Q ss_pred --------HHHHHHHhcCCCCchhhhhcccc--hhHHHHHHHHHHh
Q 022442 237 --------ELLLELESKQPPPDLSDLLGLNL--EDEFVNGLEEMVR 272 (297)
Q Consensus 237 --------~~l~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~l~ 272 (297)
.+++.+....|-...+..++.++ +++|-+..+.++.
T Consensus 267 ~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 267 KDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred hhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 12222223333333333344443 5777777777765
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.94 E-value=2.1e-07 Score=82.10 Aligned_cols=138 Identities=17% Similarity=0.085 Sum_probs=114.2
Q ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442 61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 139 (297)
Q Consensus 61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~ 139 (297)
..+..++..|..+...|++++|++.|+.++...|.... ......+|.+|.+.|++++|+..+++.++..|.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-------- 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-------- 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC--------
Confidence 45667889999999999999999999999999997422 123456899999999999999999999999773
Q ss_pred hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC------------------hHHHHHHHHHHHHhCCCcHH---H---
Q 022442 140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN------------------FMAAEVVYQKAQMIDPDANK---A--- 195 (297)
Q Consensus 140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~------------------~~eA~~~y~~Al~~~P~~~~---~--- 195 (297)
.|+.+.+++.+|.++..+++ ..+|+..|++.++..|+..- .
T Consensus 102 ---------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 102 ---------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred ---------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 23456788999988755541 35789999999999998852 1
Q ss_pred ------------hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 196 ------------CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 196 ------------~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+..|..|.+.|++..|+.-++.++..
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 45788999999999999999999996
No 132
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=3.7e-07 Score=88.57 Aligned_cols=183 Identities=17% Similarity=0.062 Sum_probs=134.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH-----
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----- 111 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~----- 111 (297)
.+....|++++|+..+......-.+....+...|.++.++|++++|...|+.++..+|++. ..+..|..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~--~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY--DYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHhhhcccc
Confidence 3455789999999999998888888888899999999999999999999999999999843 233334333311
Q ss_pred cCCHHHHHHHHHHHHHhhchhhh-------------hc-------------Ccc------hhHHhhhhh------h---H
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEA-------------FN-------------GKP------TKTARSHGK------K---F 150 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~-------------~~-------------~~~------~~~~~~~~~------~---~ 150 (297)
....+.-..+|++.-...|...+ |. |.+ ..+.....+ . +
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 12567778888887666552211 10 000 000000000 0 0
Q ss_pred HHh--------------cCCCc--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHH
Q 022442 151 QVS--------------VRQET--SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARS 213 (297)
Q Consensus 151 ~~~--------------l~p~~--~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~ 213 (297)
.-. .+|.. .++++.|+..|...|++++|+.+..+||+..|+.++ ++..|.+|-..|++.+|..
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 001 11111 256788999999999999999999999999999999 7888999999999999999
Q ss_pred HHHHHHhc
Q 022442 214 VLEDVLYG 221 (297)
Q Consensus 214 ~~~~al~~ 221 (297)
.++.+...
T Consensus 250 ~~~~Ar~L 257 (517)
T PF12569_consen 250 AMDEAREL 257 (517)
T ss_pred HHHHHHhC
Confidence 99999987
No 133
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.9e-08 Score=91.14 Aligned_cols=130 Identities=17% Similarity=0.120 Sum_probs=105.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCc-------------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-------------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 132 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-------------~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~ 132 (297)
...-|..|.+.|+|..|+..|++++..-+. ......+++|+.+|.++++|.+|+....++|++.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--- 287 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--- 287 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---
Confidence 566799999999999999999987765331 1123456778999999999999999999999874
Q ss_pred hhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHH
Q 022442 133 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA 211 (297)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA 211 (297)
|++..+++.-|.+|..+|+|+.|+..|++|++++|+|.. ...|..|-.+..++.+.
T Consensus 288 -----------------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 -----------------------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred -----------------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999987 77788887777766555
Q ss_pred -HHHHHHHHhc
Q 022442 212 -RSVLEDVLYG 221 (297)
Q Consensus 212 -~~~~~~al~~ 221 (297)
..+|.+.+..
T Consensus 345 ekk~y~~mF~k 355 (397)
T KOG0543|consen 345 EKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhc
Confidence 6777887764
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=98.92 E-value=5.5e-08 Score=91.24 Aligned_cols=149 Identities=9% Similarity=0.045 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 44 DPEAAIVLFWKAI---NAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 44 ~~~~A~~~~~~al---~~~p~~~~a~~~Lg~~l~~~---------g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
+.+.|+.+|.+++ .++|..+.++-.++.++... ....+|.++.+++++++|.|+. ....+|.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~--a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK--ILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHh
Confidence 4567999999999 99999999999999888665 2345777788899999998764 34447887888
Q ss_pred cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~ 191 (297)
.|+++.|+..+++|+.++ |+.+.+++..|+++.-.|+.++|+++.++|++++|.
T Consensus 351 ~~~~~~a~~~f~rA~~L~--------------------------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS--------------------------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hcchhhHHHHHHHHhhcC--------------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 899999999999999985 467889999999999999999999999999999998
Q ss_pred cHH--HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 192 ANK--ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 192 ~~~--~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
-.. ...+-.-..-....++|+..|-+-.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred hhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 764 55665523345667888888866444
No 135
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.4e-07 Score=84.24 Aligned_cols=214 Identities=12% Similarity=0.049 Sum_probs=150.1
Q ss_pred HHHHHHHHHHcCCHHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEA--AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~--A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
.++....+.-.++... +..++-.-.+.-|++.+.+..+|.++...|++++|+..|+++..++|... ..--..|.++
T Consensus 199 ~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--~~MD~Ya~LL 276 (564)
T KOG1174|consen 199 KWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--EAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--hhHHHHHHHH
Confidence 4444444444555444 44555555667788999999999999999999999999999999999621 1222346677
Q ss_pred HHcCCHHHHHHHHHHHHHhhch--hhhhc-CcchhHHhhhhhh-----HHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQ--GEAFN-GKPTKTARSHGKK-----FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 181 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~--~~~~~-~~~~~~~~~~~~~-----~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~ 181 (297)
...|+++.-..+-...+.+... ..++. +......+..... ..+.++|.+..++..-|.++.++||.++|+-+
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 8999999888888888777532 23333 1110000001111 11567788999999999999999999999999
Q ss_pred HHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CC----CcchhhHHHHHHHHHHHHhcCC
Q 022442 182 YQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI--------PG----CEDGRTRKRAEELLLELESKQP 247 (297)
Q Consensus 182 y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~--------~~----~~~~~~~~~a~~~l~~~~~~~~ 247 (297)
||.|..+.|-... +-.|-.+|...|++.||...-+.+...-+ .+ .+++...++|...+..-....|
T Consensus 357 FR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 357 FRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 9999999999998 88999999999999999988887765411 11 1234455566666665544444
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.91 E-value=9.3e-08 Score=93.00 Aligned_cols=140 Identities=12% Similarity=-0.082 Sum_probs=100.0
Q ss_pred HcCCChHHHH--HHHHHHHHHCCC---hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC--------HHHHHHHHH
Q 022442 57 NAGDRVDSAL--KDMAVVMKQLDR---SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK--------VEEQIEMLK 123 (297)
Q Consensus 57 ~~~p~~~~a~--~~Lg~~l~~~g~---~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~--------~~eAi~~~~ 123 (297)
...|.++++| +..|.-+...+. +.+|+.+|+++++++|+++.. +..++.+|..... ...+....+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a--~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYA--QAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4456665554 445666665544 789999999999999986432 2223444433221 223333333
Q ss_pred HHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442 124 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 202 (297)
Q Consensus 124 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l 202 (297)
+++.+ ...|..+.++.-+|..+...|++++|...|++|++++|+ .. +..+|.++
T Consensus 409 ~a~al------------------------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~ 463 (517)
T PRK10153 409 NIVAL------------------------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY 463 (517)
T ss_pred Hhhhc------------------------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 33222 123456678888999999999999999999999999996 55 88999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q 022442 203 IKRTRYNEARSVLEDVLYGRI 223 (297)
Q Consensus 203 ~~~g~~~eA~~~~~~al~~~~ 223 (297)
...|++++|++.|++++...|
T Consensus 464 ~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999843
No 137
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.6e-07 Score=91.40 Aligned_cols=175 Identities=15% Similarity=0.073 Sum_probs=127.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~ 114 (297)
+.-.....|=...|+..|++ .+.|-....+|...|+..+|..+.++-++..|+ ..++..||++....--
T Consensus 404 laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d---~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD---PRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc---chhHHHhhhhccChHH
Confidence 34455677888888888886 356778888999999999999999888885444 2566667777666555
Q ss_pred HHHHHHHHHHHHHhhchhhhhcCcch--hHHhhhhhhHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 115 VEEQIEMLKRKLRLIYQGEAFNGKPT--KTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 115 ~~eAi~~~~~al~~~p~~~~~~~~~~--~~~~~~~~~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
|++|.++.+..-.... ..++.... .......+.+. ++++|-...+|+++|.+..+++++..|..+|.+++.++|
T Consensus 473 yEkawElsn~~sarA~--r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQ--RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHhhhhhHHHH--HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 5666555554333210 01000000 00111112222 577888889999999999999999999999999999999
Q ss_pred CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
++.. |.||+.+|++.|+..+|...+.+++..+
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9998 9999999999999999999999999874
No 138
>PRK15331 chaperone protein SicA; Provisional
Probab=98.90 E-value=3.2e-08 Score=80.95 Aligned_cols=116 Identities=9% Similarity=-0.008 Sum_probs=95.9
Q ss_pred cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442 58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~ 137 (297)
+.++.-+..+..|.-+.++|++++|...|+-+...+|.+. ....-||.++..+|+|++|+..|--+..+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~--~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-------- 101 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP--DYTMGLAAVCQLKKQFQKACDLYAVAFTLL-------- 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 4455667788899999999999999999999999999754 344558999999999999999999988773
Q ss_pred cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHH
Q 022442 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCL 202 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l 202 (297)
++++...+..|.||..+|+.+.|..+|..|+. .|.+......+..+
T Consensus 102 ------------------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 102 ------------------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred ------------------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 34666789999999999999999999999999 57766544444444
No 139
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.90 E-value=3.4e-07 Score=76.08 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=124.6
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh-hCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSKQSQESLDNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~-~~P~~~~~~l~~~L~~ly~~~g~~~eAi~ 120 (297)
.=|++....-..+.+...|.+.. ...||+.+...||+.||...|++++. +.-.++. +..-++...+..+++.+|..
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a--~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 69 KLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAA--MLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred hcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH--HHHHHHHHHHhhccHHHHHH
Confidence 34677777777777777777654 67899999999999999999999875 3334433 33347788999999999999
Q ss_pred HHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHH
Q 022442 121 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGL 200 (297)
Q Consensus 121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~ 200 (297)
.+++..+..|.. ..++.+.-+|.+|..+|++.+|+..|+.++...|+....+-.+.
T Consensus 146 tLe~l~e~~pa~------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e 201 (251)
T COG4700 146 TLEDLMEYNPAF------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAE 201 (251)
T ss_pred HHHHHhhcCCcc------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999876521 13456777899999999999999999999999999888777899
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 022442 201 CLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 201 ~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+.++|+..+|..-+..+...
T Consensus 202 ~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 202 MLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHhcchhHHHHHHHHHHHH
Confidence 999999999998888777764
No 140
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.2e-07 Score=90.30 Aligned_cols=198 Identities=18% Similarity=0.138 Sum_probs=119.6
Q ss_pred hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHH
Q 022442 22 IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101 (297)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l 101 (297)
+...|++.+++.+.-...+..+.+++|+.+.++-....-.+ .-.+.-+.+..++|+.++|+..++ ..++.+ ..+
T Consensus 39 l~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~--~~l 112 (652)
T KOG2376|consen 39 LSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLD--DKL 112 (652)
T ss_pred HhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccc--hHH
Confidence 33344443444433334455567777774444322111111 111566788888888888888877 233321 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh--hhc-CcchhHHhhhhhhHH-HhcCCC-cHHHHHHHHHHHHHCCChH
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE--AFN-GKPTKTARSHGKKFQ-VSVRQE-TSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~--~~~-~~~~~~~~~~~~~~~-~~l~p~-~~~~l~nLg~~y~~~g~~~ 176 (297)
.-+-+.++.++|+|++|.++|+..++-.-++. -.. +.............+ +.+.|+ .-+.++|.+.++...|+|.
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 33357788899999999999999887643210 000 000000111111111 233344 5578999999999999999
Q ss_pred HHHHHHHHHHHh-------CCCc---H-----H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 022442 177 AAEVVYQKAQMI-------DPDA---N-----K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG 225 (297)
Q Consensus 177 eA~~~y~~Al~~-------~P~~---~-----~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~ 225 (297)
+|++.+++|+++ +-.+ . . ...|+.+|..+|+.+||..+|..++...+.+
T Consensus 193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 999999999543 1111 1 1 3569999999999999999999999874443
No 141
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=3.7e-08 Score=96.23 Aligned_cols=130 Identities=16% Similarity=0.080 Sum_probs=115.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 116 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~ 116 (297)
-+....+..++|.-++..+-.++|-.+..++..|.++...|.+.||.++|..++.++|++. .....+|.++.+.|+..
T Consensus 658 ~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv--~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 658 DLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV--PSMTALAELLLELGSPR 735 (799)
T ss_pred HHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhCCcc
Confidence 3455678888999999999999999999999999999999999999999999999999854 34455899999999888
Q ss_pred HHHH--HHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 117 EQIE--MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 117 eAi~--~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
-|.. .+..++++. |.++++|++||.++..+|+.++|..+|.-|+++++.+|.
T Consensus 736 la~~~~~L~dalr~d--------------------------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLD--------------------------PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hHHHHHHHHHHHhhC--------------------------CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8877 888888874 568899999999999999999999999999999999884
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.88 E-value=6.8e-08 Score=75.75 Aligned_cols=101 Identities=21% Similarity=0.125 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
.+++++|.++..+|+.++|+..|++++...++.. .......+|..|...|++++|+..+++++...|.+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence 4567777777777777777777777777655421 122334467777777777777777777776544210
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
-+..+...++.++...|+++||+..+-.++.
T Consensus 73 --------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 --------------LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred --------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0233455567777777777777777776664
No 143
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.88 E-value=7.8e-09 Score=96.75 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=65.5
Q ss_pred hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+|+++.+++|+|.+|..+|+|++|+.+|++||+++|++. . ++|+|.+|..+|++++|+..++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999997 3 899999999999999999999999986
No 144
>PLN03077 Protein ECB2; Provisional
Probab=98.86 E-value=2.3e-07 Score=95.93 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=101.9
Q ss_pred cchhhhhhhhhcCC--CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 13 SKKEDLFHVIHKVP--AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
......+..+.+.. ++...+..+...+.+.|+.++|...|++... .+..+|..+...|.+.|+.++|+..|++..
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445555555543 2333455556677788888888888876433 234467778888888888888888888776
Q ss_pred hh-CCcchH--------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-
Q 022442 91 GL-CSKQSQ--------------------------------ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN- 136 (297)
Q Consensus 91 ~~-~P~~~~--------------------------------~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~- 136 (297)
.. .|+... ..+.+.|.+.|.+.|++++|...|++. .++-..|+
T Consensus 483 ~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~ 559 (857)
T PLN03077 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNI 559 (857)
T ss_pred hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHH
Confidence 42 343110 011223445556666666666655553 11111111
Q ss_pred --------CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCCcHHHhHHHHHHHHc
Q 022442 137 --------GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI---DPDANKACNLGLCLIKR 205 (297)
Q Consensus 137 --------~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~---~P~~~~~~nLg~~l~~~ 205 (297)
|.......-........+.|+. .++..+-.+|...|++++|..+|+...+. .|+...+..+..+|.+.
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 0000000000000001233332 23444445566666666666666665532 33332345566666666
Q ss_pred CCHHHHHHHHHHH
Q 022442 206 TRYNEARSVLEDV 218 (297)
Q Consensus 206 g~~~eA~~~~~~a 218 (297)
|++++|...+++.
T Consensus 639 G~~~eA~~~~~~m 651 (857)
T PLN03077 639 GKLTEAYNFINKM 651 (857)
T ss_pred CCHHHHHHHHHHC
Confidence 6666666666553
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=7.1e-08 Score=85.98 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLID 107 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ 107 (297)
|..+..+.+..|++++|+..|++.++..|+. +.+++.+|.+|...|++++|+..|++++...|++. .......+|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333334466899999999999999999987 58999999999999999999999999999999732 2234455799
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhch
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQ 131 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~ 131 (297)
+|..+|++++|+..|+++++..|.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999998774
No 146
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=3.5e-08 Score=95.96 Aligned_cols=177 Identities=16% Similarity=0.096 Sum_probs=121.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 116 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~ 116 (297)
.++...|+..+|....++-++ .|+++-.|-.+|-+.+...-|++|.++.+..-.. ....+|......++|.
T Consensus 432 ~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 432 LCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHH
Confidence 345667788888888887777 5666666666676666666566665554332111 1112233334467777
Q ss_pred HHHHHHHHHHHhhch--hhhhc-Ccc-hhHHhhhhh--hH--HHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 117 EQIEMLKRKLRLIYQ--GEAFN-GKP-TKTARSHGK--KF--QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 117 eAi~~~~~al~~~p~--~~~~~-~~~-~~~~~~~~~--~~--~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
++..+++..++++|- +-+|. |.. .++.+.... .| -+.++|++..+|+|++.+|..+|+-.+|...+++|++.
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 777777777777652 23332 211 011111111 12 25778899999999999999999999999999999999
Q ss_pred CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 189 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 189 ~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
+-++.. |-|.-.+..+.|.+++|+..|.+.+..+
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 977887 9999999999999999999999998763
No 147
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.79 E-value=1e-08 Score=73.90 Aligned_cols=64 Identities=30% Similarity=0.320 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~----~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+.++.++|.+|..+|++++|+.+|++++++ .++++ . +.++|.++..+|++++|+.+++++++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999976 23333 3 679999999999999999999999874
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.8e-07 Score=80.87 Aligned_cols=181 Identities=15% Similarity=0.078 Sum_probs=139.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 115 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~ 115 (297)
.+..+.+.+++.|++++.--.+.+|.....+..||.+|....+|.+|.++|+++-.+.|...+..++ -+..+.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHHHHHhccc
Confidence 3445788999999999999999999999999999999999999999999999999999985443443 35556788999
Q ss_pred HHHHHHHHHHHHhhchhhhhcC--cchh-HHhhhh----hhHHHhcCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 116 EEQIEMLKRKLRLIYQGEAFNG--KPTK-TARSHG----KKFQVSVRQ--ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~~~~~--~~~~-~~~~~~----~~~~~~l~p--~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
.+|+.+....... |. ..+. .+.. +.-+.+ ....+.--| +.+++.+|.|.+..+.|+|++|.+-|+.|+
T Consensus 95 ADALrV~~~~~D~-~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 95 ADALRVAFLLLDN-PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHHHHHhcCC-HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 9999877665442 10 0000 0000 000000 011123334 567899999999999999999999999999
Q ss_pred HhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 187 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 187 ~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+..--++- .+|++.+..+.|+++.|+.+..++++.
T Consensus 172 qvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99998888 999999999999999999999998876
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.2e-07 Score=87.24 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=85.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
-|+.|++.|+|..|+..|++++...+....+.. ....... + --..++.||+.||..+++|.+|+....+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-------ee~~~~~-~---~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-------EEQKKAE-A---LKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-------HHHHHHH-H---HHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 467789999999999999999997542111110 0000000 0 0113789999999999999999999999
Q ss_pred HHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 185 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 185 Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|+++|+|.. ++.-|.++..+|+|+.|+..|++++..
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999998 999999999999999999999999998
No 150
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=4.6e-08 Score=68.35 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=49.5
Q ss_pred HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+.|++++|+..|++++..+|++.. ++.||.+|.+.|++++|..++++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999998 999999999999999999999999986
No 151
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=6.6e-08 Score=67.55 Aligned_cols=65 Identities=22% Similarity=0.149 Sum_probs=56.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI 106 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~ 106 (297)
+..|++++|+..|++++..+|++.+++..+|.+|..+|++++|...+++++..+|++ ..+...++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999984 23444343
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.1e-07 Score=85.52 Aligned_cols=127 Identities=15% Similarity=0.095 Sum_probs=109.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHH------------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--hHHHHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDS------------ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNV 104 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~------------a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~~~~l~~~ 104 (297)
..-..+.+.|+..|+++++++|++.. .+..-|+-..+.|++.+|.+.|..++.++|.+ ....++..
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 33478899999999999999998643 45667899999999999999999999999973 34456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
.+.+..+.|+..+|+.-.+.++++++ ....++...|.|+..+++|++|.+.|++
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~--------------------------syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDS--------------------------SYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999854 2335788899999999999999999999
Q ss_pred HHHhCCC
Q 022442 185 AQMIDPD 191 (297)
Q Consensus 185 Al~~~P~ 191 (297)
|++..-+
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 9998877
No 153
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=1.7e-06 Score=89.87 Aligned_cols=168 Identities=14% Similarity=0.019 Sum_probs=126.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLI 106 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~ 106 (297)
+.++...|++++|..++++++...|.. ..++..+|.++...|++++|...+++++..... .........++
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 456678999999999999999854432 235678999999999999999999998865432 11122345678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
.++...|++++|...+++++.+... .+..- .+....++..+|.++...|++++|...+++++
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~--------------~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEE--------------QHLEQ----LPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH--------------hcccc----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 9999999999999999999987421 00000 00012346678999999999999999999999
Q ss_pred HhCCC----c-HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 187 MIDPD----A-NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 187 ~~~P~----~-~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+... . .. +..+|.++...|++++|...++++...
T Consensus 601 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 601 EVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 86432 2 23 557899999999999999999988653
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=1.1e-07 Score=67.30 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=38.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
.+|.+.+++++|+.++++++.+.| +++..+..+|.+|..+|++++|+..|++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--------------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--------------------------DDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--------------------------ccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455666666666666666666533 344556666666666666666666666666
Q ss_pred HhCCCcHH
Q 022442 187 MIDPDANK 194 (297)
Q Consensus 187 ~~~P~~~~ 194 (297)
+..|+++.
T Consensus 57 ~~~p~~~~ 64 (73)
T PF13371_consen 57 ELSPDDPD 64 (73)
T ss_pred HHCCCcHH
Confidence 66666654
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.69 E-value=9.3e-08 Score=89.64 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=52.5
Q ss_pred cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
.+|++++++.++|.+|..+|++++|+..|+++++++|++... ..++++|.+|..+|++++|+++|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467777788888888888888888888888888888874321 23455777788888888888888888776
No 156
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.68 E-value=6.8e-06 Score=67.64 Aligned_cols=191 Identities=25% Similarity=0.291 Sum_probs=116.5
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI 106 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~ 106 (297)
..............+++..+...+...+. ..+.....+..+|..+...+.+.+++..+..++...+... ......+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD--LAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc--hHHHHHH
Confidence 44566666777788999999999999887 7888888999999999999999999999999998777531 1222233
Q ss_pred H-HHHHcCCHHHHHHHHHHHHHhhch--hhh--hc--CcchhHHhhhhh---hHH--HhcCCC-cHHHHHHHHHHHHHCC
Q 022442 107 D-LYKKCGKVEEQIEMLKRKLRLIYQ--GEA--FN--GKPTKTARSHGK---KFQ--VSVRQE-TSRLLGNLAWAYMQKT 173 (297)
Q Consensus 107 ~-ly~~~g~~~eAi~~~~~al~~~p~--~~~--~~--~~~~~~~~~~~~---~~~--~~l~p~-~~~~l~nLg~~y~~~g 173 (297)
. ++...|++++|+..|.+++...|. ... .. ............ .+. +.+.+. ....+.+++.++...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 4 788999999999999999775431 100 00 000000000000 000 222333 3445555555555555
Q ss_pred ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++|+..+.+++...|+... +..++..+...|.++++...+.+++..
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555333 444444444444555555555555554
No 157
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.68 E-value=5.3e-08 Score=83.11 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=91.9
Q ss_pred HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcC
Q 022442 168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ 246 (297)
Q Consensus 168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~ 246 (297)
...+.++.+.|.+.|.+|+++.|+... |..+|..-.+.|+++.|...|+++++. ++++.. -+..-|+.+....
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l---dp~D~~---gaa~kLa~lg~~e 77 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL---DPEDHG---GAALKLAVLGRGE 77 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC---Cccccc---chhhhHHhhcCCC
Confidence 456789999999999999999999998 999999999999999999999999998 454332 3677788887767
Q ss_pred CCCchhhhhcccchhHHHHHHHHHHhhcCcccC
Q 022442 247 PPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRS 279 (297)
Q Consensus 247 ~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~yr~ 279 (297)
.|..+++.|+..+||.|++.|+..|...++|+.
T Consensus 78 ~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v 110 (287)
T COG4976 78 TPEKPPSAYVETLFDQYAERFDHILVDKLGYSV 110 (287)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 778888899999999999999999887667773
No 158
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.67 E-value=9.9e-08 Score=68.66 Aligned_cols=70 Identities=26% Similarity=0.389 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
...+.+|.+|..+|++++|+..|++++++.. ..+.. .|+.+.+++++|.+|..+|++++|+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEE--------------QLGDD-----HPDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--------------HTTTH-----HHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------HHCCC-----CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4556689999999999999999999998721 01110 0123468999999999999999999
Q ss_pred HHHHHHHHh
Q 022442 180 VVYQKAQMI 188 (297)
Q Consensus 180 ~~y~~Al~~ 188 (297)
.+|++|+++
T Consensus 67 ~~~~~al~i 75 (78)
T PF13424_consen 67 EYYQKALDI 75 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999986
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.64 E-value=6.2e-08 Score=89.01 Aligned_cols=188 Identities=18% Similarity=0.155 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH------HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCcchHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAI------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESL 101 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al------~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~----~~P~~~~~~l 101 (297)
|-++|..+.--+|+++|+++-.-=| .-.-..+.+--+||+++...|+|++|+..+.+-+. ++..-.....
T Consensus 58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RA 137 (639)
T KOG1130|consen 58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRA 137 (639)
T ss_pred HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHH
Confidence 5666666666666666666543222 22223444445666666666666666666555333 2222111223
Q ss_pred HHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhhch-------hhhhc--Cc-------chhHHhh
Q 022442 102 DNVLIDLYKKCGK--------------------VEEQIEMLKRKLRLIYQ-------GEAFN--GK-------PTKTARS 145 (297)
Q Consensus 102 ~~~L~~ly~~~g~--------------------~~eAi~~~~~al~~~p~-------~~~~~--~~-------~~~~~~~ 145 (297)
.++||.+|...|+ ++.|.+.|..-|++... +.+|- |+ .......
T Consensus 138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~ 217 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHF 217 (639)
T ss_pred HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHH
Confidence 3446666666654 34556666666665321 11110 00 0000000
Q ss_pred hhhhHHHhcCCC------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC----CcH--H-HhHHHHHHHHcCCHHHHH
Q 022442 146 HGKKFQVSVRQE------TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP----DAN--K-ACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 146 ~~~~~~~~l~p~------~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P----~~~--~-~~nLg~~l~~~g~~~eA~ 212 (297)
|.. .+.|..+ --+++.|||.+|.-+|+++.|+++|++++.+.- ... . .+.||+.|.-...++.|+
T Consensus 218 H~~--RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI 295 (639)
T KOG1130|consen 218 HKL--RLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI 295 (639)
T ss_pred HHH--HHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 000 0111111 124788999999999999999999999876532 222 2 578899888888999999
Q ss_pred HHHHHHHhc
Q 022442 213 SVLEDVLYG 221 (297)
Q Consensus 213 ~~~~~al~~ 221 (297)
.++.+-+.+
T Consensus 296 ~Yh~rHLaI 304 (639)
T KOG1130|consen 296 TYHQRHLAI 304 (639)
T ss_pred HHHHHHHHH
Confidence 888876654
No 160
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.64 E-value=1.8e-07 Score=66.26 Aligned_cols=57 Identities=32% Similarity=0.407 Sum_probs=54.6
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|..+|.+.+++++|+.++++++.++|+++. +..+|.++..+|++++|...++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998 999999999999999999999999997
No 161
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.63 E-value=2.2e-07 Score=85.40 Aligned_cols=186 Identities=20% Similarity=0.168 Sum_probs=126.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHCCChHHHHHHHHHH----HhhCCcchHHHHHHHHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLID 107 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~Lg~~l~~~g~~~eAi~~~~~a----l~~~P~~~~~~l~~~L~~ 107 (297)
|....+.||....+.+|++|++....+- .++-.||++|.-+++|++|++.-..- ..++..........+||+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4456688999999999999999887753 34667899999999999999864432 222222111112233788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhch-------h-hhhc-C-------cchhHH-----hhhh-----------hhHH--Hh
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQ-------G-EAFN-G-------KPTKTA-----RSHG-----------KKFQ--VS 153 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~-------~-~~~~-~-------~~~~~~-----~~~~-----------~~~~--~~ 153 (297)
.+.-.|+|++|+-+..+-|.+... + +.|| + +...+. ...+ +.+. ++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998887421 1 1222 1 100000 0000 0011 11
Q ss_pred cCC--C----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 154 VRQ--E----TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 154 l~p--~----~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
+-. . .-+++.|||..|.-+|+|+.|+..-+.-|.+.-... . +.|||+|++-+|+++.|+++|++.+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111 1 124678999999999999999999999888865443 2 46899999999999999999998775
Q ss_pred c
Q 022442 221 G 221 (297)
Q Consensus 221 ~ 221 (297)
.
T Consensus 264 L 264 (639)
T KOG1130|consen 264 L 264 (639)
T ss_pred H
Confidence 4
No 162
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=6.8e-06 Score=85.36 Aligned_cols=168 Identities=14% Similarity=-0.043 Sum_probs=125.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch---HHHH
Q 022442 34 RAKHAQLVQKDPEAAIVLFWKAINAGDR---------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS---QESL 101 (297)
Q Consensus 34 ~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~---~~~l 101 (297)
....+....|++++|..+++++...-+. ...+...+|.++...|++++|...+++++...|... ....
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3445566789999999999988763211 234556678899999999999999999988655421 1123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 181 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~ 181 (297)
.+.+|.++...|++++|...+++++..... .+.... ...++.++|.++...|++++|..+
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~--------------~g~~~~------~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQ--------------HDVYHY------ALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--------------hcchHH------HHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456788899999999999999999987321 111000 123678899999999999999999
Q ss_pred HHHHHHhCC-----Cc---HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 182 YQKAQMIDP-----DA---NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 182 y~~Al~~~P-----~~---~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++++++.. +. .. ...+|.++...|++++|...+++++..
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 999998632 11 12 457899999999999999999998875
No 163
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=1e-06 Score=79.77 Aligned_cols=149 Identities=17% Similarity=0.078 Sum_probs=100.8
Q ss_pred hhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCC
Q 022442 17 DLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g--~~~eAi~~~~~al~~~P 94 (297)
++...+++. ..-....-..++++.-++++.|.+.++..-+.+++..-+....+.+....| ++.+|.-.|+......|
T Consensus 120 ~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~ 198 (290)
T PF04733_consen 120 EALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG 198 (290)
T ss_dssp HHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred HHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC
Confidence 444444444 122233334567778888888888888877777664433333333444444 68888888888777765
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC
Q 022442 95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN 174 (297)
Q Consensus 95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~ 174 (297)
.. ..+.+.++.++..+|++++|...+++++... |.+++++.|+..+...+|+
T Consensus 199 ~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--------------------------~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 199 ST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKD--------------------------PNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp -S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------------------------CCHHHHHHHHHHHHHHTT-
T ss_pred CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--------------------------cCCHHHHHHHHHHHHHhCC
Confidence 52 2455567788888889999888888877653 5678899999999999999
Q ss_pred h-HHHHHHHHHHHHhCCCcHH
Q 022442 175 F-MAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 175 ~-~eA~~~y~~Al~~~P~~~~ 194 (297)
. +.+.++..+....+|+++-
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSHH
T ss_pred ChhHHHHHHHHHHHhCCCChH
Confidence 9 5677788888889999885
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=98.60 E-value=2.1e-06 Score=80.75 Aligned_cols=139 Identities=9% Similarity=0.061 Sum_probs=104.2
Q ss_pred HHHcCCChH---HHH----HHHHHHHHHCC---ChHHHHHHHHHHH---hhCCcchHHHHHHHHHHHHHHc---------
Q 022442 55 AINAGDRVD---SAL----KDMAVVMKQLD---RSEEAIEAIKSFR---GLCSKQSQESLDNVLIDLYKKC--------- 112 (297)
Q Consensus 55 al~~~p~~~---~a~----~~Lg~~l~~~g---~~~eAi~~~~~al---~~~P~~~~~~l~~~L~~ly~~~--------- 112 (297)
+....|.+. ++| +..|.....++ ..+.|..+|.+++ .++|+.+ ..+..++.++...
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a--~a~~~lA~~h~~~~~~g~~~~~ 317 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT--ECYCLLAECHMSLALHGKSELE 317 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH--HHHHHHHHHHHHHHHhcCCCch
Confidence 344445544 444 45565554444 4567888899999 8999743 2333345444332
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442 113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
....+|..+-++|+++ +|+++.++..+|.++...|+++.|+..|++|+.++|+.
T Consensus 318 ~~~~~a~~~A~rAvel--------------------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 318 LAAQKALELLDYVSDI--------------------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred HHHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence 2334555555555554 56788899999999999999999999999999999999
Q ss_pred HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 193 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 193 ~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+. ++-.|.+..-.|+.++|....++++..
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 98 999999999999999999999999997
No 165
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.60 E-value=9.3e-07 Score=77.72 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=74.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR 144 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~ 144 (297)
.++.|.-+.+.|+|.+|+..|...++..|+.. ..+..+-||.++..+|++++|...|..+++-.|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 67777777788888888888888888777531 1133344677777777777777777777776542
Q ss_pred hhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 145 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 145 ~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
.|.-+++++-||.+..++|+.++|...|+++++..|+...
T Consensus 211 ----------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 211 ----------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred ----------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 1334567777777777777777777777777777777664
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.58 E-value=2e-05 Score=64.78 Aligned_cols=176 Identities=24% Similarity=0.227 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRG--LCSKQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~--~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~--~~P~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
.+....+...+...+...+. ........+..+...+.+..++..+..... ..+. ........+..+...+.+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN--LAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc--hHHHHHHHHHHHHHHhhHHH
Confidence 57788899999999998887 477889999999999999999999999886 4454 22445557888899999999
Q ss_pred HHHHHHHHHHhhchhhh---------h-c-CcchhHHhhhhhhHHHhcCC---CcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 118 QIEMLKRKLRLIYQGEA---------F-N-GKPTKTARSHGKKFQVSVRQ---ETSRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~---------~-~-~~~~~~~~~~~~~~~~~l~p---~~~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
++..+.+++...+.... + . +......... ... +.+.| ........++..+...+++++|+..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY-EKA-LELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHH-HHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 99999999986542100 0 0 0000000000 000 12222 233344444445555556666666666
Q ss_pred HHHHhCCC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 184 KAQMIDPD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 184 ~Al~~~P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++...|+ ... ..+++.++...|++++|...+..++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 66655555 344 555555555555566666555555554
No 167
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.58 E-value=1.9e-06 Score=69.08 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
+..++.-|....+.|+|.+|++.|+.+....|.. ........|+.+|.+.|++++|+..+++-|+++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---------- 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---------- 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Confidence 4556777777777888888888888877777742 11234455777788888888888888888877662
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC---------------hHHHHHHHHHHHHhCCCcH
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN---------------FMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~---------------~~eA~~~y~~Al~~~P~~~ 193 (297)
.|+-+.+++..|.++.++.. ..+|...|++.+...|++.
T Consensus 80 -------------hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 80 -------------HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred -------------CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 12234466777777777665 7788888888888888876
No 168
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.58 E-value=2.3e-06 Score=80.27 Aligned_cols=115 Identities=20% Similarity=0.140 Sum_probs=99.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
...++++.|+.++++..+.+|. +...++.++...++-.+|+..+.+++..+|.++ .+....+..+...|+++.|+
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~--~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS--ELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHH
Confidence 3568999999999999988876 455689999999999999999999999999853 45566788999999999999
Q ss_pred HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
.+.++++.+.| +.-..|..|+.+|..+|++++|+..+..+
T Consensus 255 ~iAk~av~lsP--------------------------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSP--------------------------SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCc--------------------------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999865 34468999999999999999999877643
No 169
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=2.9e-06 Score=81.16 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
+.+.-.+.+...|++++|+.-..+.+...|+..++++---++++++++|++|+..++.-....-. ....+--+.+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~---~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI---NSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc---chhhHHHHHHHH
Confidence 34444556678899999999999999999999999999999999999999999665543222111 112123467778
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID- 189 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~- 189 (297)
++++.++|+..++ .+.. ++..++.--|.++.++|+|++|+..|+..++-+
T Consensus 91 rlnk~Dealk~~~-~~~~----------------------------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-GLDR----------------------------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HcccHHHHHHHHh-cccc----------------------------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 9999999999887 2221 222355667899999999999999999975432
Q ss_pred -----------------------------CCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 190 -----------------------------PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 190 -----------------------------P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
|++. + .+|.+-+++..|+|.+|++.+++++.
T Consensus 142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3322 4 68999999999999999999999953
No 170
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.45 E-value=9.8e-06 Score=63.76 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=78.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--hHHHHHHHHHHHHHHcCCHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCGKVE 116 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~~~~l~~~L~~ly~~~g~~~ 116 (297)
....|+++.|++.|.++|.+-|..++++.|-+..+.-+|+.++|++-+.+++.+..+. .....+.--|.+|+.+|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 4467999999999999999999999999999999999999999999999999986542 11233344688999999999
Q ss_pred HHHHHHHHHHHh
Q 022442 117 EQIEMLKRKLRL 128 (297)
Q Consensus 117 eAi~~~~~al~~ 128 (297)
.|-.-|+.+-++
T Consensus 133 ~AR~DFe~AA~L 144 (175)
T KOG4555|consen 133 AARADFEAAAQL 144 (175)
T ss_pred HHHHhHHHHHHh
Confidence 999999998887
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.45 E-value=3.6e-07 Score=58.48 Aligned_cols=41 Identities=27% Similarity=0.205 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHH
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL 200 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~ 200 (297)
.++..+|.+|.++|++++|+++|+++++.+|+++. |..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 47899999999999999999999999999999998 888875
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.43 E-value=1.4e-05 Score=77.78 Aligned_cols=138 Identities=16% Similarity=0.070 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc
Q 022442 33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC 112 (297)
Q Consensus 33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~ 112 (297)
+.+.+.+-..|++++|+.++.+||...|..++.+...|.+|...|++.+|.+.++.+..+++.| ..+.+-.+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD--RYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHC
Confidence 3444555578999999999999999999999999999999999999999999999999999974 34555667778999
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
|++++|+.....-.+-.- + .. .+...+ ...+.....|.+|.+.|++..|+..|..+++.-
T Consensus 276 ~~~e~A~~~~~~Ftr~~~-~-~~-----------~~L~~m----Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDV-D-PL-----------SNLNDM----QCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred CCHHHHHHHHHhhcCCCC-C-cc-----------cCHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999987766444310 0 00 000000 012455668999999999999999999999864
No 173
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=9.3e-06 Score=73.72 Aligned_cols=174 Identities=20% Similarity=0.148 Sum_probs=125.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
.+...|+..|+.+++-....+.... +...-+|.++..+|+|++|+..|.-+.... ++...++..|+-+++-.|.|.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHH
Confidence 4578899999999998887665544 456679999999999999999998876632 2234577778999999999999
Q ss_pred HHHHHHHHHHhhchh--hhhc-----CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 118 QIEMLKRKLRLIYQG--EAFN-----GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 118 Ai~~~~~al~~~p~~--~~~~-----~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
|..+-.++-+- |-. -.++ +.-.++. .|+-.+ +|..+-...|+.++...-.|.+|++.|+++|.-+|
T Consensus 110 A~~~~~ka~k~-pL~~RLlfhlahklndEk~~~-----~fh~~L-qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 110 AKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRIL-----TFHSSL-QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHH-----HHHHHH-hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 99887775432 210 0000 0000000 111111 12223345678888888899999999999999999
Q ss_pred CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+... -.+++.||.++.=++-+.+++.--+..
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 9888 778999999999999998888777764
No 174
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=5.2e-06 Score=69.85 Aligned_cols=92 Identities=23% Similarity=0.161 Sum_probs=60.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
++..|.|++|..-|..||++.|+-.. . .-+-.+.|.|.++..+++++.|+.-..+|+++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~------e---------------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTST------E---------------ERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccH------H---------------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 36667777777777777777652100 0 01124566777777777777777777777777
Q ss_pred CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 189 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 189 ~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|.+.. +...+.+|.++..|++|+.-|.++++.
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 777776 555677777777777777777777775
No 175
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.38 E-value=6.2e-06 Score=68.36 Aligned_cols=49 Identities=24% Similarity=0.233 Sum_probs=36.7
Q ss_pred hcCCCcHHHHHHHHHHHHHCCC-----------hHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442 153 SVRQETSRLLGNLAWAYMQKTN-----------FMAAEVVYQKAQMIDPDANK-ACNLGLC 201 (297)
Q Consensus 153 ~l~p~~~~~l~nLg~~y~~~g~-----------~~eA~~~y~~Al~~~P~~~~-~~nLg~~ 201 (297)
.|+|+..+++.++|.+|..++. |++|..+|++|++.+|++.. ...|..+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4467788899999999988765 78899999999999999987 5555544
No 176
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.37 E-value=8.7e-07 Score=53.16 Aligned_cols=33 Identities=36% Similarity=0.452 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
.+++++|.+|..+|++++|+.+|++|++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 579999999999999999999999999999985
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.37 E-value=0.00014 Score=63.67 Aligned_cols=186 Identities=15% Similarity=0.082 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLI 106 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L~ 106 (297)
.++.-+.-.+..|++++|+..|++.....|. ...+...++.++.+.+++++|+..+++.+.+.|.+.+. -+.++.|
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 4566677788999999999999999887666 45678899999999999999999999999999974322 2334444
Q ss_pred HHHHH--------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHH
Q 022442 107 DLYKK--------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 178 (297)
Q Consensus 107 ~ly~~--------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA 178 (297)
..+.. +....+|+..++..|...|...--. .+......+. -..+.-=..+|..|.+.|.+-.|
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~-----dA~~~i~~~~----d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP-----DAKARIVKLN----DALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh-----hHHHHHHHHH----HHHHHHHHHHHHHHHHhcChHHH
Confidence 44433 2345678888888888877432100 0000000000 00011224589999999999999
Q ss_pred HHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442 179 EVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 226 (297)
Q Consensus 179 ~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~ 226 (297)
+.-++++++..|+.. . +.-|..+|..+|-.++|...- ++|..+.+++
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s 237 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCC
Confidence 999999999988775 3 567889999999999997654 4555544443
No 178
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.37 E-value=0.00021 Score=65.80 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
+|.-+...+-.-||.+.|-.+..++-+..+ +.-......+.++..+|++..|..-..++....|.+. .+..+...+|
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--~vlrLa~r~y 197 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--EVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--HHHHHHHHHH
Confidence 455556667778999999999998888733 2334566778899999999999999999999999743 4555567899
Q ss_pred HHcCCHHHHHHHHHHHHHhhc---h------hhhhcCcchhHHh--------hhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442 110 KKCGKVEEQIEMLKRKLRLIY---Q------GEAFNGKPTKTAR--------SHGKKFQVSVRQETSRLLGNLAWAYMQK 172 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p---~------~~~~~~~~~~~~~--------~~~~~~~~~l~p~~~~~l~nLg~~y~~~ 172 (297)
.+.|++.+...++.+.-+..- + ..++.+.+..... .+.+... .-...++.+...++.=+.+.
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHc
Confidence 999999999888887665421 0 0111111000000 0000000 00013456677778888888
Q ss_pred CChHHHHHHHHHHHHh-------------------------------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 173 TNFMAAEVVYQKAQMI-------------------------------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 173 g~~~eA~~~y~~Al~~-------------------------------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
|++++|.+..+.+++. .|+++. +..||..+.+.+.+.+|..+++.++.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred CChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888888777753 477777 78899999999999999999999998
Q ss_pred c
Q 022442 221 G 221 (297)
Q Consensus 221 ~ 221 (297)
.
T Consensus 357 ~ 357 (400)
T COG3071 357 L 357 (400)
T ss_pred c
Confidence 6
No 179
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=7.4e-05 Score=65.53 Aligned_cols=139 Identities=18% Similarity=0.112 Sum_probs=88.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh-------hhhc--
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-------EAFN-- 136 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~-------~~~~-- 136 (297)
+..-|.++...|++++|..+......+.- .+.+ ..++.+..+++-|+..++++..+..+. +|.+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~-----~Al~--VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la 183 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEA-----AALN--VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLA 183 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHH-----HHHH--HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 44447788888888888887766332211 1111 245577888888888888888875321 1111
Q ss_pred CcchhHHhhhhhhHH----Hh-cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH
Q 022442 137 GKPTKTARSHGKKFQ----VS-VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE 210 (297)
Q Consensus 137 ~~~~~~~~~~~~~~~----~~-l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e 210 (297)
....+ ..+.|. +. --|-.+.+++..+.|++.+|||+||+..++.||..+|++++ ..|+-.+-...|...+
T Consensus 184 ~ggek----~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 184 TGGEK----IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred ccchh----hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 00000 001111 11 12345667788888888999999999999999988888888 8888888888887766
Q ss_pred HHHHH
Q 022442 211 ARSVL 215 (297)
Q Consensus 211 A~~~~ 215 (297)
+..-+
T Consensus 260 ~~~r~ 264 (299)
T KOG3081|consen 260 VTERN 264 (299)
T ss_pred HHHHH
Confidence 65444
No 180
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=1e-05 Score=71.16 Aligned_cols=100 Identities=13% Similarity=-0.028 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLID 107 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ 107 (297)
++.+..-+++.||+..|+..|..-++..|+ .+.|++.||.++..+|++++|...|..+.+-.|+... .....-||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 567777778899999999999999998887 4688999999999999999999999999999996321 134445899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhch
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQ 131 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~ 131 (297)
+...+|+.++|-..|+++++..|.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999998773
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.31 E-value=1.1e-06 Score=79.19 Aligned_cols=183 Identities=11% Similarity=-0.032 Sum_probs=131.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 115 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~ 115 (297)
|.-++.+|.+++|+.||.+++..+|-++-.+.|.+.+|.++.+|..|..-+..++.++-. ....+.--+..-..+|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHhhH
Confidence 445789999999999999999999999999999999999999999999999999998765 334455556777889999
Q ss_pred HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH-------HH--HHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS-------RL--LGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~-------~~--l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
.||..-++.+|++.|....+.-...++..-........-.|... .+ .-.-|..+...|.++-++.+|-+-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~ 261 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPR 261 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccc
Confidence 99999999999998853221100000000000000000011111 11 1234777788899999999998888
Q ss_pred HhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 187 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 187 ~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+-++.. ..+ +..+.+.-++++++.-.-+++..
T Consensus 262 A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~ 296 (536)
T KOG4648|consen 262 ATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP 296 (536)
T ss_pred cccCccccCccc-HHHHHHHhhcchhHHHHHHhcCC
Confidence 77777665 555 77888888999998777666654
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.29 E-value=4e-05 Score=63.95 Aligned_cols=130 Identities=9% Similarity=-0.013 Sum_probs=105.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
-++++......|++.+|...|++++. +.-.++..+..++......+++.+|...++.+.+.+|..-..+-...++..|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 44556667788999999999999998 56677788889999999999999999999999999985211223445788999
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
.+|++.+|...|+.++...| .+.+....|..+..+|+.++|-.-|..+.+.
T Consensus 172 a~g~~a~Aesafe~a~~~yp---------------------------g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 172 AQGKYADAESAFEVAISYYP---------------------------GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred hcCCchhHHHHHHHHHHhCC---------------------------CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999999999999765 1234555678889999999998888776653
No 183
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=1.4e-05 Score=64.01 Aligned_cols=102 Identities=16% Similarity=0.045 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVL 105 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L 105 (297)
..++..+.-.+..|++++|++.++......|- ...+...||.+|.+.|++++|++.++++++++|.+... -+.+..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 35777788888999999999999998886554 56789999999999999999999999999999974322 233446
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHHhhch
Q 022442 106 IDLYKKCGK---------------VEEQIEMLKRKLRLIYQ 131 (297)
Q Consensus 106 ~~ly~~~g~---------------~~eAi~~~~~al~~~p~ 131 (297)
|..+..+.. ..+|...|++.|...|.
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 777777766 88889999998888663
No 184
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=9.5e-06 Score=68.31 Aligned_cols=100 Identities=22% Similarity=0.155 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHhhchhhhh
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY--------KKCGKVEEQIEMLKRKLRLIYQGEAF 135 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly--------~~~g~~~eAi~~~~~al~~~p~~~~~ 135 (297)
+.+..-|+-+...|.|++|..-|..++.++|.-.. -.-.++ .+++.++.||....++|++.|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p----- 165 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNP----- 165 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-----
Confidence 34666799999999999999999999999997221 256543 456788888888888888754
Q ss_pred cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 136 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
.+..++...+.+|.++.+|++|+.-|+++++++|....
T Consensus 166 ---------------------ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 166 ---------------------TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred ---------------------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 34567888999999999999999999999999998654
No 185
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.26 E-value=8.3e-07 Score=53.53 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHH
Q 022442 181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~ 212 (297)
+|++||+++|+++. +++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 48899999999998 999999999999999986
No 186
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.26 E-value=2.4e-06 Score=51.00 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
.+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999986
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.26 E-value=8.4e-07 Score=53.52 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=31.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHH
Q 022442 51 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE 84 (297)
Q Consensus 51 ~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~ 84 (297)
+|++||+++|+++.+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999999999999999999999999999973
No 188
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.23 E-value=0.00014 Score=68.83 Aligned_cols=57 Identities=21% Similarity=0.104 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCcHH-HhHH------HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 022442 177 AAEVVYQKAQMIDPDANK-ACNL------GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE 241 (297)
Q Consensus 177 eA~~~y~~Al~~~P~~~~-~~nL------g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~ 241 (297)
.|.+..+||++.+|.-+. ...+ -.-+.+.|+ +||+.+-.--+. ++++.+.|.+.|..
T Consensus 364 ~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~-------hWk~veGAL~lL~~ 427 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQ-------HWKRVEGALNLLHC 427 (539)
T ss_pred HHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHH-------HHhcCHhHHHHHHH
Confidence 477899999999999886 4321 223455665 888877766665 35555556666653
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=3.1e-05 Score=66.09 Aligned_cols=167 Identities=13% Similarity=-0.016 Sum_probs=95.8
Q ss_pred hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHH
Q 022442 22 IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101 (297)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l 101 (297)
+.--|..+.+|..+|.....+|+++.|.+.|.-.++++|....++.|-|+.+.--||+.-|.+-+.+....+|+++...+
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L 171 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL 171 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence 33446666667777777777777777777777777777777777777777777777777777777777777776554444
Q ss_pred HHHHHHHHHHcCCHHHHHHHH-HHHHHhhchhhhh-------cCcchh-HHhhhhhhHH---HhcCCCcHHHHHHHHHHH
Q 022442 102 DNVLIDLYKKCGKVEEQIEML-KRKLRLIYQGEAF-------NGKPTK-TARSHGKKFQ---VSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~-~~al~~~p~~~~~-------~~~~~~-~~~~~~~~~~---~~l~p~~~~~l~nLg~~y 169 (297)
+..|. ...-+..+|...+ +++.... .+-+- -|.... ..-.....+. -.+.....++++.||.-|
T Consensus 172 WLYl~---E~k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 172 WLYLN---EQKLDPKQAKTNLKQRAEKSD-KEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHHH---HhhCCHHHHHHHHHHHHHhcc-HhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 43221 3333455554333 2222221 11110 011000 0000000000 000011245788999999
Q ss_pred HHCCChHHHHHHHHHHHHhCCCc
Q 022442 170 MQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
..+|+.++|...|+-|+..+--+
T Consensus 248 l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred hccccHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999866543
No 190
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=0.00028 Score=73.59 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=136.4
Q ss_pred ccchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCh-------HHHHHHHHHHHHHCCChHHH
Q 022442 12 SSKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAIN-AGDRV-------DSALKDMAVVMKQLDRSEEA 82 (297)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~-------~~a~~~Lg~~l~~~g~~~eA 82 (297)
.|+-++-| +.+.+-|++.-..-+.....+..++.++|.+..++|+. +++.- +-|+.||=+.| |.-+.-
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence 44334444 88888888877777777778889999999999999997 55553 33444544444 566677
Q ss_pred HHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442 83 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL 162 (297)
Q Consensus 83 i~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l 162 (297)
.+.|+++.+.+.. ..++..|..+|...+++++|.++|+..++..- +...+|
T Consensus 1517 ~kVFeRAcqycd~---~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------------------------q~~~vW 1567 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA---YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------------------------QTRKVW 1567 (1710)
T ss_pred HHHHHHHHHhcch---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------------------------chhhHH
Confidence 7899999998854 35677788999999999999999999998631 123478
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCC--cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPD--ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~--~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
...|..++.+.+-++|-..+.+||..-|. +.. .-..+..-.+.|+-+.+..+|+..+..
T Consensus 1568 ~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1568 IMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 88888888888888888888888888887 445 556778888888888888888888776
No 191
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.17 E-value=7.1e-05 Score=59.00 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=86.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 145 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~ 145 (297)
+..-|+.+...|+.++|++.|.+++.+.|.. .+.+|+-+..|+-+|+.++|++-+++++++.-+. ++..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-------trta-- 114 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-------TRTA-- 114 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-------chHH--
Confidence 4556899999999999999999999999984 3677888999999999999999999999984210 1111
Q ss_pred hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
-.++...|.+|..+|+.+.|..-|..|-++...+..
T Consensus 115 -------------cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 115 -------------CQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred -------------HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 136788999999999999999999999988776653
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.11 E-value=0.00033 Score=67.74 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=117.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHH-------H--HH-H--HCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMA-------V--VM-K--QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg-------~--~l-~--~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
-.||-+.++.+++++.+ .++.-.++-.|. . .+ . .....+.|.+++.......|+.. -+....|.+
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~~~gR~ 276 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLFFEGRL 276 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHH
Confidence 46999999999999988 333222211111 1 11 1 34567889999999999999843 344557899
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+...|+.++|++.|++++.... ..+.+ ..-.++.+|+++.-+++|++|..+|.+.++.
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~---------------~~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQS---------------EWKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchh---------------hHHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 9999999999999999886321 00101 1236789999999999999999999999998
Q ss_pred CCCcHH--HhHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q 022442 189 DPDANK--ACNLGLCLIKRTRY-------NEARSVLEDVLYG 221 (297)
Q Consensus 189 ~P~~~~--~~nLg~~l~~~g~~-------~eA~~~~~~al~~ 221 (297)
+.-... .+-.|.|+...|+. ++|...++++-..
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 887665 56789999999999 8888888887654
No 193
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.4e-05 Score=68.99 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=80.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
|.-|....+|+.||.+|-++|.++|. .+..+.|-+.||+++.+++....-.++|
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~--------------------------~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPT--------------------------VASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCC--------------------------cchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 44456778999999999999999762 3456789999999999999999999999
Q ss_pred HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++|+... .+-||.++.....|++|+..+.++...
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999998 999999999999999999999999654
No 194
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0016 Score=57.34 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-CcchhH
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKT 142 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~ 142 (297)
.+...++..+..-++.++=+....+.+...-......+...-+.+|...|++++|+.+..+...+. -.+.+ ....+.
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE--~~Al~VqI~lk~ 150 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE--AAALNVQILLKM 150 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH--HHHHHHHHHHHH
Confidence 345666777766677777666555544332222232444556789999999999999988844431 11111 001110
Q ss_pred Hhhh--hhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHH
Q 022442 143 ARSH--GKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVL 215 (297)
Q Consensus 143 ~~~~--~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~ 215 (297)
-+.. .+.......-+...++..|+.+|.. .+++.+|.-+|+.--+..|-.+. ....+.|.+.+||++||..++
T Consensus 151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 0000 0111112223455678888888755 36899999999999885565565 888999999999999999999
Q ss_pred HHHHhcCC
Q 022442 216 EDVLYGRI 223 (297)
Q Consensus 216 ~~al~~~~ 223 (297)
+.+|...+
T Consensus 231 ~eaL~kd~ 238 (299)
T KOG3081|consen 231 EEALDKDA 238 (299)
T ss_pred HHHHhccC
Confidence 99999733
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.06 E-value=0.00072 Score=59.24 Aligned_cols=136 Identities=20% Similarity=0.172 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
++-|++-|....+.|++++|+..|+++....|.. ........++..+.+.|++++|+...++-+.+.|..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~--------- 104 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH--------- 104 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC---------
Confidence 4568888999999999999999999999999963 223455668899999999999999999999997721
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHH--------CCChHHHHHHHHHHHHhCCCcHH---H---------------
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQ--------KTNFMAAEVVYQKAQMIDPDANK---A--------------- 195 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~--------~g~~~eA~~~y~~Al~~~P~~~~---~--------------- 195 (297)
|+-..+++..|.++.. +.--.+|+..|+..+...|+..- .
T Consensus 105 --------------~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 105 --------------PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred --------------CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 2233455566666543 33446889999999999998741 1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+|..|.+.|.+..|+.-++.+++.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 45799999999999999999999997
No 196
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.04 E-value=2.5e-05 Score=70.69 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=86.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 145 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~ 145 (297)
+..-|+-|.++|+|+|||++|.+.+.+.|-++ .++.+-+..|+++++|..|..-.+.|+.++.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------------- 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDK--------------- 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH---------------
Confidence 56689999999999999999999999999533 3444568889999999999999999998842
Q ss_pred hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
....+|...|.+-..+|...||-+-|+.+|++.|++..
T Consensus 163 -----------~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 163 -----------LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred -----------HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 02247788999999999999999999999999999875
No 197
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.0016 Score=61.47 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=138.9
Q ss_pred hhhhh-hhhhcCCCCCcH-HH---------HHHHHHHHcCCHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHCCCh
Q 022442 15 KEDLF-HVIHKVPAGDGP-YV---------RAKHAQLVQKDPEAAIVLFWKAINAGDR----VDSALKDMAVVMKQLDRS 79 (297)
Q Consensus 15 ~~~~~-~~~~~~~~~~~~-~~---------~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~Lg~~l~~~g~~ 79 (297)
=.+-| +.+.++|+...- ++ .+.+..+...|.+.+.+.|+..|.+-|. .+..|..-|...+.+.+.
T Consensus 341 Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l 420 (677)
T KOG1915|consen 341 IRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL 420 (677)
T ss_pred HHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc
Confidence 34556 677777764442 11 1122345779999999999999998886 577788889999999999
Q ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH
Q 022442 80 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 159 (297)
Q Consensus 80 ~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 159 (297)
..|..++-.++..+|.+ .+..-...+=.++++++..-.+|++-|+-.| ++-
T Consensus 421 ~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~P--------------------------e~c 471 (677)
T KOG1915|consen 421 TGARKILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSP--------------------------ENC 471 (677)
T ss_pred HHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh--------------------------Hhh
Confidence 99999999999999984 2332234566788999999999999998754 455
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CcHH--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANK--ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-~~~~--~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.++...|..=..+|+.+.|-.+|.-|+.... +.+. |-.....-...|.++.|..+|++.|+.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 6788889989999999999999999988543 3344 445566667889999999999999986
No 198
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.0042 Score=58.81 Aligned_cols=195 Identities=11% Similarity=0.036 Sum_probs=119.2
Q ss_pred hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHH---------HHHHHH-HHHHHCCChHHHHHHHHHHHh
Q 022442 22 IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDS---------ALKDMA-VVMKQLDRSEEAIEAIKSFRG 91 (297)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~Lg-~~l~~~g~~~eAi~~~~~al~ 91 (297)
+.+.|-+..+.+-...+--..|+.+.-.+.|++||..-|...+ .|.+-+ ..-+...+.+.+.++|+.+++
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444444556666666666666665444221 111111 111344566666666666666
Q ss_pred hCCc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442 92 LCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 92 ~~P~--~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y 169 (297)
+-|- ..-..+..+.+.--.++.+...|-.++-.||...|....| -..-.+=
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF---------------------------k~YIelE 447 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF---------------------------KGYIELE 447 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH---------------------------HHHHHHH
Confidence 6663 1112233334445556666666666666666665532221 1112233
Q ss_pred HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------chhhHHHHH
Q 022442 170 MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE------------DGRTRKRAE 236 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~------------~~~~~~~a~ 236 (297)
.++++++.--.+|++-|+.+|.+-. |...|.+-..+|+.+.|..+|+-+++.+..+.+ ...+++++.
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 5678899999999999999999997 999999999999999999999999986433322 245566777
Q ss_pred HHHHHHH
Q 022442 237 ELLLELE 243 (297)
Q Consensus 237 ~~l~~~~ 243 (297)
.+.+.+.
T Consensus 528 ~LYerlL 534 (677)
T KOG1915|consen 528 ALYERLL 534 (677)
T ss_pred HHHHHHH
Confidence 7766553
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.93 E-value=0.00062 Score=54.81 Aligned_cols=61 Identities=26% Similarity=0.200 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
.++..++..+...|++++|+..+++++.++|-+.. +..|-.+|..+|+..+|+.+|++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999998 88999999999999999999998764
No 200
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.92 E-value=4.9e-05 Score=63.10 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442 45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114 (297)
Q Consensus 45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~----------~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~ 114 (297)
++.|.+-++.....+|.+++++++=|.+|..+.+ +++|+.-|+.++.++|+.. ....++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 5778888888889999999999998888876643 4667778888999999842 233446666666543
Q ss_pred -----------HHHHHHHHHHHHHhhchhhhh
Q 022442 115 -----------VEEQIEMLKRKLRLIYQGEAF 135 (297)
Q Consensus 115 -----------~~eAi~~~~~al~~~p~~~~~ 135 (297)
|++|..+|++|+...|.+..|
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 667777777777776654443
No 201
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.92 E-value=1.9e-05 Score=47.11 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
.+++.+|.+|.++|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999964
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.90 E-value=0.0049 Score=57.05 Aligned_cols=180 Identities=14% Similarity=0.032 Sum_probs=134.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHH-------------------------------
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS------------------------------- 88 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~------------------------------- 88 (297)
...|+.+.|..+-+++....|..+.++...-...+..|+++.|+.+.+.
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4679999999999999999999999988888888899999999987651
Q ss_pred ----------HHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh---hc-CcchhHHhhhhh--hHHH
Q 022442 89 ----------FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA---FN-GKPTKTARSHGK--KFQV 152 (297)
Q Consensus 89 ----------al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~---~~-~~~~~~~~~~~~--~~~~ 152 (297)
+.++.|+... ...+-+.+|++.|+..++-.+++.+.+..|.... |. .+........-+ ....
T Consensus 245 p~~Ar~~A~~a~KL~pdlvP--aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 245 PASARDDALEANKLAPDLVP--AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred hHHHHHHHHHHhhcCCccch--HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 2233343211 1223467788999999999999999998875322 21 111111111111 1224
Q ss_pred hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442 153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIK-RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~-~g~~~eA~~~~~~al~~ 221 (297)
+++|++.......+..-..-|+|..|-.--+.+....|.-..+.-|+.+-.. .|+-.+....+-+++..
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999988877677776654 49999999999999876
No 203
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.90 E-value=0.002 Score=62.86 Aligned_cols=176 Identities=11% Similarity=0.137 Sum_probs=120.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--chHHHHHHHHH
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAIN-AGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLI 106 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~~~~l~~~L~ 106 (297)
.+.+.+.+|+..+-+.-|..|++ .+|.. ...|..+|..|-..|+.+.|..+|+++.+.+=. +....++...|
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA 432 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 45677788999999999999887 66653 356888999999999999999999999987533 11223444456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhh---hhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGE---AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
..=.+..+++.|..+.++|+.. |... .|.+....+.+-| ....+|..++......|=++.-...|.
T Consensus 433 emElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlh----------rSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLH----------RSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHH----------HhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6667888999999999999886 5432 2222211111111 123456666666666677777777777
Q ss_pred HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++++.--.|. ..|.|..+....-++++..+|++-+..
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 77777666666 667777777777777777777766654
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0012 Score=58.20 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 143 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~ 143 (297)
...+-+..+++..|.|.=.+.++.+++..+|.. ...+...||.+-.+.|+.+.|...++++-+-.. ..++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~-~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---kL~~------ 247 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---KLDG------ 247 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh---hhhc------
Confidence 356668889999999999999999999999752 224666689999999999999999987554311 0000
Q ss_pred hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
-. ..--++.|.+.+|.-..+|.+|...|.+++..||.++. ..|-+.|++=.|+..+|+..++.++..
T Consensus 248 -~q----------~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 248 -LQ----------GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred -cc----------hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00 11237889999999999999999999999999999998 788999999999999999999999987
No 205
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.014 Score=59.05 Aligned_cols=242 Identities=14% Similarity=0.064 Sum_probs=134.5
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442 20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE 99 (297)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~ 99 (297)
.++++.|+...+-+--+....+.|+.++|..+++..-...+++...+..+-.+|..+|++++|...|+++...+|+ .
T Consensus 34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~--e- 110 (932)
T KOG2053|consen 34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS--E- 110 (932)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc--H-
Confidence 5677777776666555666777788888887776555566667777777888888888888888888888888886 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-C------------c--chhHH-hhhhhhHHHhcCCC-----c
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-G------------K--PTKTA-RSHGKKFQVSVRQE-----T 158 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-~------------~--~~~~~-~~~~~~~~~~l~p~-----~ 158 (297)
.+...+-..|.+-+.|.+-.++--+.-+..|....+- . . ..... .-..+.++..++.. .
T Consensus 111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 2333345566777776665444333333334322110 0 0 00000 00001111111111 1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCCCcH-HHhHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHH
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQ-MIDPDAN-KACNL-GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRA 235 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al-~~~P~~~-~~~nL-g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a 235 (297)
+++... =.++..+|+++||...+..-+ +..+.-+ ...++ ...+...+++.+-.++..+++.. ++++.+.+ .
T Consensus 191 aE~~Ly-l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k---~~Ddy~~~--~ 264 (932)
T KOG2053|consen 191 AEIILY-LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK---GNDDYKIY--T 264 (932)
T ss_pred HHHHHH-HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---CCcchHHH--H
Confidence 122221 246778899999999994433 3444433 34444 55777888999999988888886 45543311 1
Q ss_pred HHHHHHHHhcC-CCCchhhhhcccchhHHHHHHHHHH
Q 022442 236 EELLLELESKQ-PPPDLSDLLGLNLEDEFVNGLEEMV 271 (297)
Q Consensus 236 ~~~l~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~l 271 (297)
....+-++... +|+......... .|++++-.+..+
T Consensus 265 ~sv~klLe~~~~~~a~~~~s~~~~-l~~~~ek~~~~i 300 (932)
T KOG2053|consen 265 DSVFKLLELLNKEPAEAAHSLSKS-LDECIEKAQKNI 300 (932)
T ss_pred HHHHHHHHhcccccchhhhhhhhh-HHHHHHHHHHhh
Confidence 22444444442 233333333322 355555555444
No 206
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.87 E-value=0.00065 Score=62.16 Aligned_cols=185 Identities=18% Similarity=0.129 Sum_probs=128.8
Q ss_pred hhhhhhhhhcCCCCCc---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------hHHHHHHHHHHHHHCCChHH
Q 022442 15 KEDLFHVIHKVPAGDG---PYVRAKHAQLVQKDPEAAIVLFWKAINAGDR----------VDSALKDMAVVMKQLDRSEE 81 (297)
Q Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~Lg~~l~~~g~~~e 81 (297)
=+.++++.+...+.-. .++.++-++-.-+|+++|+-+..+|..+-.+ ..-+++.|++.+..+|+.-.
T Consensus 145 fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd 224 (518)
T KOG1941|consen 145 FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD 224 (518)
T ss_pred HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc
Confidence 3556666666632222 4777777777788999999999998875322 23467889999999999999
Q ss_pred HHHHHHHHHhhCC---cc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC
Q 022442 82 AIEAIKSFRGLCS---KQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157 (297)
Q Consensus 82 Ai~~~~~al~~~P---~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~ 157 (297)
|.+.++++.++.- +. .+..-...+|++|+..|+.+.|..-|++|....- ..++...
T Consensus 225 A~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~--------------~~gdrmg------ 284 (518)
T KOG1941|consen 225 AMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA--------------SLGDRMG------ 284 (518)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh--------------hhhhhHH------
Confidence 9999998765532 11 1222235579999999999999999999988631 1122111
Q ss_pred cHHHHHHHHHHHHHCCChHH-----HHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 158 TSRLLGNLAWAYMQKTNFMA-----AEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~e-----A~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
...++...+.++....-..+ |++.-++++++...-. . +..|+.+|..+|.-++=...+.++-
T Consensus 285 qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 285 QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 12366777777777666666 8888888888765432 2 4678999999987777666665543
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.6e-05 Score=65.81 Aligned_cols=88 Identities=20% Similarity=0.157 Sum_probs=80.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
....++++.|+.+|.+||..+|..+..+.+-+.++.++.+++.+..-.++++++.|+. .-.++.||....+...|++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHH
Confidence 4456789999999999999999999999999999999999999999999999999983 34566789999999999999
Q ss_pred HHHHHHHHHh
Q 022442 119 IEMLKRKLRL 128 (297)
Q Consensus 119 i~~~~~al~~ 128 (297)
|.++.++..+
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 9999999776
No 208
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0025 Score=55.50 Aligned_cols=189 Identities=17% Similarity=0.194 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CcchHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQSQE 99 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~~~~ 99 (297)
.|.++...+-..+++++|..++.+|++...++. .++...|.+...+..+.|++..|+++..+. |+-+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 477777788889999999999999997544432 345567888899999999999999987653 221211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
.+.. .+.+ .+.-++++|+++|++++.+...+. +.+. -.+.+...+.+|....+|+||-
T Consensus 113 aleK-Aak~-lenv~Pd~AlqlYqralavve~~d----------r~~m----------a~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 113 ALEK-AAKA-LENVKPDDALQLYQRALAVVEEDD----------RDQM----------AFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHH-HHHH-hhcCCHHHHHHHHHHHHHHHhccc----------hHHH----------HHHHHHHhhhHhhhhHHhhHHH
Confidence 2222 2333 577899999999999998743110 0000 1235677899999999999999
Q ss_pred HHHHHHHHh----C--CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 022442 180 VVYQKAQMI----D--PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE 243 (297)
Q Consensus 180 ~~y~~Al~~----~--P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~ 243 (297)
..+.+-... + |+.-. ......+++-..+|..|..+++..-+.+ +......-.....+|..+.
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip--~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP--AFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc--cccChHHHHHHHHHHHHhc
Confidence 888875433 2 22223 4455566677779999999999877652 2222222234555555553
No 209
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.80 E-value=0.00043 Score=63.32 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--ch--HHHHHHHHHHHHHHcC
Q 022442 43 KDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVLIDLYKKCG 113 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~--~~~l~~~L~~ly~~~g 113 (297)
-++.+++.+...-+.+.... ..++..+|..+..++.++++++.|+.++..... |+ ...+...||.++-+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 34555555554444432222 245667899999999999999999998876442 21 1123455788889999
Q ss_pred CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC---
Q 022442 114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP--- 190 (297)
Q Consensus 114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P--- 190 (297)
++++|+-...+|.++... + + . .+...++ ..-+++.|+.+|..+|+...|.++.++|.++.-
T Consensus 177 D~~Kal~f~~kA~~lv~s---~-~-l----~d~~~ky-------r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNS---Y-G-L----KDWSLKY-------RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred hhhHHhhhhHhHHHHHHh---c-C-c----CchhHHH-------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 999999999998887320 0 0 0 0000001 123788999999999999999999999988642
Q ss_pred CcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 191 DAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 191 ~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|.+ . ..-+|.+|...|+.+.|..-|+.+...
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 222 3 457899999999999999999988754
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.79 E-value=0.00094 Score=53.75 Aligned_cols=91 Identities=23% Similarity=0.221 Sum_probs=70.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC----------------------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDR----------------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC 93 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~----------------------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~ 93 (297)
+......++.+.++..+++++.+-.. ...++..++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 34445678999999999999985321 13455668888999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
|. ++..+..+..+|...|+..+|+..|++....
T Consensus 93 P~--~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 93 PY--DEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp TT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 97 3567777889999999999999999998765
No 211
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.78 E-value=0.0021 Score=55.07 Aligned_cols=166 Identities=12% Similarity=0.010 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 122 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~ 122 (297)
|=..-|.--|.+++.+.|..+++++.||+-+...|+++.|.++|...++++|.... ...+-|..+.--||+.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y--a~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY--AHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH--HHhccceeeeecCchHhhHHHH
Confidence 44555666777888999999999999999999999999999999999999997322 2223444556679999998877
Q ss_pred HHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH------------HHHH--HHCCChHHHHHHHHHHHHh
Q 022442 123 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL------------AWAY--MQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL------------g~~y--~~~g~~~eA~~~y~~Al~~ 188 (297)
.+--..+|.+.--. ..+.. ....++|.. +..|| ||.. .-+|+..+ ...++++...
T Consensus 157 ~~fYQ~D~~DPfR~---LWLYl-----~E~k~dP~~--A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~ 225 (297)
T COG4785 157 LAFYQDDPNDPFRS---LWLYL-----NEQKLDPKQ--AKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKAD 225 (297)
T ss_pred HHHHhcCCCChHHH---HHHHH-----HHhhCCHHH--HHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhh
Confidence 77666554321000 00000 001122211 11111 1111 22344333 3456666665
Q ss_pred CCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 189 DPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 189 ~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.-++.. ..-||..+...|+.++|...|+-++..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 555542 345889999999999999999999985
No 212
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.003 Score=54.65 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL----CSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~----~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
+.+++|.++|.+| |++|.....+..|-.+|.++... +..+...+-+...+.+ .+.++..+|
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHH
Confidence 4788888888775 44555556666666666665433 2221111222223344 456699999
Q ss_pred HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCCCcH----
Q 022442 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-TNFMAAEVVYQKAQMIDPDAN---- 193 (297)
Q Consensus 119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~-g~~~eA~~~y~~Al~~~P~~~---- 193 (297)
+.++++++++... . | .|.+ -+.-+..+|.+|..- .+++.|+.+|++|-+......
T Consensus 93 v~cL~~aieIyt~----------~----G-rf~~-----aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 93 VNCLEKAIEIYTD----------M----G-RFTM-----AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHHh----------h----h-HHHH-----HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 9999999998421 0 1 1110 123567899999654 999999999999998654332
Q ss_pred --H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 194 --K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 194 --~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
. .+..+..-...|+|++|+.+|+++...
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 344566677889999999999998865
No 213
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00067 Score=61.91 Aligned_cols=137 Identities=21% Similarity=0.119 Sum_probs=102.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH--------------HhhCCcchH---
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF--------------RGLCSKQSQ--- 98 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a--------------l~~~P~~~~--- 98 (297)
++.+..-||+++|+..|.-+.+.+.-..+.+.+|+.++.-+|.|.||..+-.++ .+++...-.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 566778899999999999888877777889999999999999999998765432 223321100
Q ss_pred -HHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH
Q 022442 99 -ESL------DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ 171 (297)
Q Consensus 99 -~~l------~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~ 171 (297)
.++ ...|+.+....-.|.|||++|+++|.-+| +.-.+-.+++.||..
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~--------------------------ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP--------------------------EYIALNVYMALCYYK 197 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh--------------------------hhhhhHHHHHHHHHh
Confidence 111 12355666666789999999999887654 122244679999999
Q ss_pred CCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442 172 KTNFMAAEVVYQKAQMIDPDANKACNL 198 (297)
Q Consensus 172 ~g~~~eA~~~y~~Al~~~P~~~~~~nL 198 (297)
+.=|+-+.+.+.--|..-||.+...||
T Consensus 198 lDYydvsqevl~vYL~q~pdStiA~NL 224 (557)
T KOG3785|consen 198 LDYYDVSQEVLKVYLRQFPDSTIAKNL 224 (557)
T ss_pred cchhhhHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999999875444
No 214
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.011 Score=51.20 Aligned_cols=190 Identities=21% Similarity=0.229 Sum_probs=126.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH----HHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINA----GDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ----ESL 101 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~----~~l 101 (297)
|.+++..+-..+.+..|=..|.++... +.. .+..+...+.+|.+ ++..+|+..+++++.+.-+... ...
T Consensus 37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~ 115 (288)
T KOG1586|consen 37 YERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKH 115 (288)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 666777777788888887777777652 322 33456666666655 4999999999999988664111 122
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 102 DNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 102 ~~~L~~ly~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
+..+|.+|... .+++.||.+|+++-+........ .+ --..+.-.+..-.++++|.+|+.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~--------ss------------ANKC~lKvA~yaa~leqY~~Ai~ 175 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV--------SS------------ANKCLLKVAQYAAQLEQYSKAID 175 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh--------hh------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888776 89999999999988763211000 00 00134445666678899999999
Q ss_pred HHHHHHHhCCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 022442 181 VYQKAQMIDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE 243 (297)
Q Consensus 181 ~y~~Al~~~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~ 243 (297)
.|+++....-+|+- ++.-|.|++..++.-.+...+++-.+.. |...+..+..-...++.++.
T Consensus 176 iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d-P~F~dsREckflk~L~~aie 245 (288)
T KOG1586|consen 176 IYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD-PAFTDSRECKFLKDLLDAIE 245 (288)
T ss_pred HHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHHh
Confidence 99999987777652 2456888888888888888888877762 22234454445555555554
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.72 E-value=9e-05 Score=47.19 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
+++..+|.+|..+|++++|++.|+++++.+|++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777777764
No 216
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=9.9e-05 Score=43.98 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
+.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 356778888888888888888888888888775
No 217
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.0028 Score=53.36 Aligned_cols=116 Identities=20% Similarity=0.130 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhCCcchHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH
Q 022442 81 EAIEAIKSFRGLCSKQSQESL-DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 159 (297)
Q Consensus 81 eAi~~~~~al~~~P~~~~~~l-~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 159 (297)
+.+...+++...+|......+ ...++..+...|++++|+..++.++.. +.++. + .+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~---------------l-------k~ 126 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDEN---------------L-------KA 126 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHH---------------H-------HH
Confidence 667777888888876333223 245788899999999999999999975 21110 0 01
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~--~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
-+-..|+.+..++|.+++|+..+.... +++... ..-.|.+|...|+.++|...|++++..
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 245679999999999999999876542 233333 334699999999999999999999986
No 218
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.67 E-value=0.00011 Score=43.59 Aligned_cols=33 Identities=27% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
+.+++.+|.++..+|++++|+..|++++.++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 356778888888888888888888888888875
No 219
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0011 Score=57.73 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=81.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH-HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
|+-+.++|+|+||+..|+.|+..-..- . .+..+..-. ++++.-....+.|...|+...|+|-+++++...
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L-~--------lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNL-Q--------LKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHH-H--------hccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 566689999999999999999863100 0 000000000 111122334688999999999999999999999
Q ss_pred HHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 185 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 185 Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|..+|+|.. ++..|.+....=+.+||..-+.++|+.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 9999999998 888999998889999999999999997
No 220
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0014 Score=58.69 Aligned_cols=137 Identities=12% Similarity=-0.048 Sum_probs=101.7
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHH----------------H
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS----------------F 89 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~----------------a 89 (297)
|-+..++--+++++....++..|..+|++.-.+.|........-+..+.+.+++.+|+..... +
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334455666788888999999999999999999999888777788888888888888865432 1
Q ss_pred H--------------hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcC
Q 022442 90 R--------------GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 155 (297)
Q Consensus 90 l--------------~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (297)
+ ..-|........+..|-+..+.|++++|++-|+.+++..-
T Consensus 121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG------------------------- 175 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG------------------------- 175 (459)
T ss_pred HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC-------------------------
Confidence 1 1123111112334467777888999999998888888631
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
-.+-+-+|++.++.+.|+++.|+++-.+.++.
T Consensus 176 -yqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 176 -YQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred -CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 12335689999999999999999998887764
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0037 Score=55.85 Aligned_cols=150 Identities=21% Similarity=0.125 Sum_probs=73.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 145 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~ 145 (297)
-..-+.-....|++.+|...|..++...|... .+...++.+|...|+.++|..++.. .|.... ..+.
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~--~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~-------~~~~ 203 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENS--EAKLLLAECLLAAGDVEAAQAILAA----LPLQAQ-------DKAA 203 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccc--hHHHHHHHHHHHcCChHHHHHHHHh----Ccccch-------hhHH
Confidence 34455556666666666666666666666532 2333356666666666666665544 121000 0000
Q ss_pred hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022442 146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIP 224 (297)
Q Consensus 146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~ 224 (297)
+ .+..--..+.+.....+. ..+++.+..+|++.. .+.|+..|...|+.++|.+.+-.++... +
T Consensus 204 ~--------------~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d-~ 267 (304)
T COG3118 204 H--------------GLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD-R 267 (304)
T ss_pred H--------------HHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c
Confidence 0 000000112222222222 224445566777666 6677777777777777777766666541 1
Q ss_pred CCcchhhHHHHHHHHHHHHh
Q 022442 225 GCEDGRTRKRAEELLLELES 244 (297)
Q Consensus 225 ~~~~~~~~~~a~~~l~~~~~ 244 (297)
+..+.....+..++|..++.
T Consensus 268 ~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 268 GFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred cccCcHHHHHHHHHHHhcCC
Confidence 12222223345555555543
No 222
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.0017 Score=65.28 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=78.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
.+..+++.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++ ...+ -.+-.+|+.+|++++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tL-q~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTL-QFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHH-HHHHHHHHHHhhhhHH
Confidence 4677899999999999999999999999999999999999999998887766666653 2333 4478899999999999
Q ss_pred HHHHHHHHHhhc
Q 022442 119 IEMLKRKLRLIY 130 (297)
Q Consensus 119 i~~~~~al~~~p 130 (297)
..+|++++...|
T Consensus 97 ~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 97 VHLYERANQKYP 108 (932)
T ss_pred HHHHHHHHhhCC
Confidence 999999999876
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0027 Score=57.67 Aligned_cols=60 Identities=8% Similarity=-0.050 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
+.-+.++-..|++-+|....++.++-.|.+- -....--++++..|+.+.-...+++.+-.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDl--la~kfsh~a~fy~G~~~~~k~ai~kIip~ 166 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDL--LAVKFSHDAHFYNGNQIGKKNAIEKIIPK 166 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhh--hhhhhhhhHHHhccchhhhhhHHHHhccc
Confidence 3344555566666666666666666666531 11111234555666666666666665543
No 224
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.54 E-value=0.0078 Score=63.31 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 121 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~ 121 (297)
-|.-+.-.+.|++|.+.... --.+..|.-+|...+++++|.++++..++..-+ ....+...++.+.++++-++|-.+
T Consensus 1510 yG~eesl~kVFeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred hCcHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHHHHH
Confidence 36667778888888885432 235778999999999999999999999988764 234555578888999999999999
Q ss_pred HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHH
Q 022442 122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL 200 (297)
Q Consensus 122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~ 200 (297)
+.+||+-.|. .++.....--+..-++.|+.+.+..+|+-.|.-+|.-.+ |.-...
T Consensus 1587 L~rAL~~lPk------------------------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1587 LKRALKSLPK------------------------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred HHHHHhhcch------------------------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 9999998662 123445667788889999999999999999999999999 998888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 022442 201 CLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 201 ~l~~~g~~~eA~~~~~~al~~~ 222 (297)
.-++.|+.+-+..+|++++...
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 8899999999999999999974
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.54 E-value=0.0022 Score=61.04 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=87.0
Q ss_pred CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcC
Q 022442 76 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 155 (297)
Q Consensus 76 ~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (297)
..+...-|++-+++++++|+-+ ..+.+|+ -....-..||+.+|+++++..... .++. .....++........
T Consensus 181 ERnp~aRIkaA~eALei~pdCA--dAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~---lg~s-~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCA--DAYILLA--EEEASTIVEAEELLRQAVKAGEAS---LGKS-QFLQHHGHFWEAWHR 252 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhh--HHHhhcc--cccccCHHHHHHHHHHHHHHHHHh---hchh-hhhhcccchhhhhhc
Confidence 3566677777788888888622 3333343 113445788888888888864210 0000 000001110000000
Q ss_pred CC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc--HH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 156 QE---TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--NK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 156 p~---~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~--~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
.+ ...+...||.|..++|+.+||++.|+..++..|.. .. ..||..+|+.+++|.++..++.+-
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 01 12356789999999999999999999999988853 34 789999999999999999888774
No 226
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.52 E-value=0.00016 Score=43.95 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
++.+||.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999996654
No 227
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.003 Score=55.61 Aligned_cols=157 Identities=13% Similarity=0.042 Sum_probs=117.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC----cchHHHHHHHHHHHHHHcC
Q 022442 39 QLVQKDPEAAIVLFWKAINAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCG 113 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P----~~~~~~l~~~L~~ly~~~g 113 (297)
.+--|.+.-....+.+.++.+ |..+.....||.+-.|.|+.+.|...++++-+.+. -.....++.+.+.+|.-++
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 445577888899999999977 66777788899999999999999999996544332 1223355666778899999
Q ss_pred CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
++.+|...|.+.+..+| .++.+.+|-+.|++-+|+..+|++..+.++.+.|...
T Consensus 267 n~a~a~r~~~~i~~~D~--------------------------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDP--------------------------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chHHHHHHHhhccccCC--------------------------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999887643 3555778899999999999999999999999999765
Q ss_pred ---H-HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442 194 ---K-ACNLGLCLIK-RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 194 ---~-~~nLg~~l~~-~g~~~eA~~~~~~al~~ 221 (297)
. ..||...|.- --+..+-...+..++..
T Consensus 321 l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~ 353 (366)
T KOG2796|consen 321 LHESVLFNLTTMYELEYSRSMQKKQALLEAVAG 353 (366)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhc
Confidence 2 4566554421 12333334455566654
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.012 Score=52.74 Aligned_cols=152 Identities=14% Similarity=0.005 Sum_probs=109.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHHHcCCHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L~~ly~~~g~~~e 117 (297)
....|++.+|...+..++...|.+.++...|+.+|...|+.++|..++.. .|.+... .+.. ...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~-----------l~a 208 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHG-----------LQA 208 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHH-----------HHH
Confidence 34689999999999999999999999999999999999999999987654 3432111 1111 222
Q ss_pred HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH--H-
Q 022442 118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--K- 194 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~--~- 194 (297)
.++.+.++-.. |+...+ .-.+.-+|++..+-+.|+..|...|++++|++.+-..+..+-+.. .
T Consensus 209 ~i~ll~qaa~~-~~~~~l-------------~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 209 QIELLEQAAAT-PEIQDL-------------QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred HHHHHHHHhcC-CCHHHH-------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 35555554443 210000 011355799999999999999999999999999999998876544 2
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 195 ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 195 ~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.-.|-.++...|..+.+...|++=+
T Consensus 275 Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 275 RKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5567777777776666666666544
No 229
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.00076 Score=63.80 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=109.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH-HhhCCcc------hHHHHHHHHHHHHHHc
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF-RGLCSKQ------SQESLDNVLIDLYKKC 112 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a-l~~~P~~------~~~~l~~~L~~ly~~~ 112 (297)
+....+..+..-..-+.....+.+.++..-+..+...|++..|.+.+-.. +.-.|.. ..-..+|+||-++.+.
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~ 296 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL 296 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence 34445555555555566666778888888999999999999999987542 2333320 1112346789999999
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhcC-cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442 113 GKVEEQIEMLKRKLRLIYQGEAFNG-KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191 (297)
Q Consensus 113 g~~~eAi~~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~ 191 (297)
|.|.-++-+|.+||+-.-.. .-+| ... ..+.+. .-..-.+++|.|..|...||+-+|.+||.+++...-.
T Consensus 297 ~~y~~~~~~F~kAL~N~c~q-L~~g~~~~-------~~~tls-~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRNSCSQ-LRNGLKPA-------KTFTLS-QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HhccCCCC-------cceehh-cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999721100 0001 000 000000 0112358999999999999999999999999999999
Q ss_pred cHH-HhHHHHHHHHc
Q 022442 192 ANK-ACNLGLCLIKR 205 (297)
Q Consensus 192 ~~~-~~nLg~~l~~~ 205 (297)
+|. |..|+.|.+..
T Consensus 368 nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 368 NPRLWLRLAECCIMA 382 (696)
T ss_pred CcHHHHHHHHHHHHH
Confidence 998 99999988654
No 230
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.0093 Score=50.27 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCChHHH---HHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442 47 AAIVLFWKAINAGDRVDSA---LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEML 122 (297)
Q Consensus 47 ~A~~~~~~al~~~p~~~~a---~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~ 122 (297)
+.+...++-+..+|....+ ...++..+...|++++|+..++.++..-.++. ...+...|+.+..++|.+|+|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444444445444332 34578889999999999999999886644321 1123345789999999999999876
Q ss_pred HHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHH-HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 123 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR-LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~-~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
.....- .+.. .-...|.++..+|+-++|...|.+|+..+++.+.
T Consensus 150 ~t~~~~----------------------------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 150 DTIKEE----------------------------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hccccc----------------------------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 552221 1111 2345799999999999999999999999877663
No 231
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0069 Score=55.13 Aligned_cols=55 Identities=16% Similarity=0.055 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHH
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE 216 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~ 216 (297)
+..++..+.+.|-|++|++.-+++++++|.+.- ...++.++...|++.|+.+.+.
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 334444455555555555555555555554443 3344444444444444444443
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.42 E-value=0.0038 Score=60.39 Aligned_cols=124 Identities=17% Similarity=-0.053 Sum_probs=98.7
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHHHcCCHHHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
..+.+.|.+++....+..|+..--++.-|.++...|+.++|++.|++++..... ........-++..+.-+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 567888999999999999999888899999999999999999999998854432 112223345788899999999999
Q ss_pred HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh-------HHHHHHHHHHHHhCC
Q 022442 120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-------MAAEVVYQKAQMIDP 190 (297)
Q Consensus 120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~-------~eA~~~y~~Al~~~P 190 (297)
..+.+.++.+.-. .+-..+..|.|+...|+. ++|..+|+++-.+-.
T Consensus 326 ~~f~~L~~~s~WS-------------------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 326 EYFLRLLKESKWS-------------------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHhccccH-------------------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999988864200 112456689999999999 999999998876644
No 233
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.40 E-value=0.00027 Score=41.50 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
+++++|.+|..+|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999999999974
No 234
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.35 E-value=0.039 Score=54.16 Aligned_cols=165 Identities=18% Similarity=0.157 Sum_probs=119.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----------chH
Q 022442 33 VRAKHAQLVQKDPEAAIVLFWKAINAG-DR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----------QSQ 98 (297)
Q Consensus 33 ~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----------~~~ 98 (297)
...+.++...|+++.|...++++++.+ +. .+..|-+-|..-....+++.|..+.+++...--. ..+
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 334567778999999999999999854 33 3677888888888999999999999988754211 112
Q ss_pred HHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442 99 ESL------DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 172 (297)
Q Consensus 99 ~~l------~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~ 172 (297)
..+ +..++++-...|-++.-..+|++.+.+.- -.|.+..|.|..+.+.
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--------------------------aTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------------------------ATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------------------------CCHHHHHHHHHHHHhh
Confidence 222 34457777888888888899999888731 1455778888888888
Q ss_pred CChHHHHHHHHHHHHhCC--CcHH-HhH-HHHHHHHcC--CHHHHHHHHHHHHhcCC
Q 022442 173 TNFMAAEVVYQKAQMIDP--DANK-ACN-LGLCLIKRT--RYNEARSVLEDVLYGRI 223 (297)
Q Consensus 173 g~~~eA~~~y~~Al~~~P--~~~~-~~n-Lg~~l~~~g--~~~eA~~~~~~al~~~~ 223 (297)
.-+++|.+.|++.+.+-| .--+ |.. |-.+..+-| ..+.|..+|+++|...|
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 889999999999888764 2224 543 222222333 77888899999988633
No 235
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.27 E-value=0.0026 Score=47.18 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
.+..+++++..+|++.++.+.+|..+...|++++|++.+-.++..+|+.........+..++...|.-+.-..-|++-|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999998863222344445667777787666666666644
No 236
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.27 E-value=0.022 Score=51.24 Aligned_cols=147 Identities=16% Similarity=0.073 Sum_probs=95.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC---
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG--- 113 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g--- 113 (297)
...+...|+.+|+++. ...++.+.++||.+|.. ..+..+|...|+++...+-..+ ......++..|..-+
T Consensus 89 v~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~ 165 (292)
T COG0790 89 VSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQAL 165 (292)
T ss_pred ccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhh
Confidence 3455777787777443 35566677778877766 3377778888877776644321 112334555544331
Q ss_pred ----CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHH
Q 022442 114 ----KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKA 185 (297)
Q Consensus 114 ----~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~A 185 (297)
....|+..|.++-.. .++.+..+||.+|.. ..++.+|...|++|
T Consensus 166 ~~~~~~~~A~~~~~~aa~~----------------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 166 AVAYDDKKALYLYRKAAEL----------------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA 217 (292)
T ss_pred cccHHHHhHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 122455555554443 255688999999865 34899999999999
Q ss_pred HHhCCCcHH-HhHHHHHHHHcC---------------CHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANK-ACNLGLCLIKRT---------------RYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g---------------~~~eA~~~~~~al~~ 221 (297)
-+... .. .++++ ++...| +...|...+..+...
T Consensus 218 a~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 218 AEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 99877 55 78888 777666 666677777666654
No 237
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.25 E-value=0.0076 Score=46.78 Aligned_cols=95 Identities=18% Similarity=0.106 Sum_probs=69.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhh---chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 109 YKKCGKVEEQIEMLKRKLRLI---YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
..+.|-|++|...++++++.. |+..+|. |.. | ++-.+..|+.++..+|+|++++..-.++
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFD---------h~G-F-------DA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFD---------HDG-F-------DAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS------------HHH-H-------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcc---------ccc-H-------HHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 346689999999999999984 5554443 000 1 2336788999999999999999888888
Q ss_pred HH-------hCCCcHH-H----hHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 186 QM-------IDPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 186 l~-------~~P~~~~-~----~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
|. ++.|... | ++.+..+...|+.++|+..|+.+-+
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 84 5677665 5 4689999999999999999998765
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.02 Score=53.42 Aligned_cols=134 Identities=18% Similarity=0.091 Sum_probs=90.3
Q ss_pred cCCHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 42 QKDPEAAIVLFWKA-INAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 42 ~g~~~~A~~~~~~a-l~~~p~~~~a~~~Lg~~l~~~---------g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
.||.++|+..+..+ ....+.+++.+-.+|.+|... ...++||..|+++..+.|+. ..+.+++.++..
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLML 271 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHH
Confidence 79999999999984 456778889888899887653 35789999999999999862 345556777788
Q ss_pred cCCHHHHHHHHHHHH-HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 112 CGKVEEQIEMLKRKL-RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 112 ~g~~~eAi~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
.|...+...-+++.. +++. + .+++-. .-+-.+-+.+..++.+..-.|++++|++++++++.+.|
T Consensus 272 ~g~~~~~~~el~~i~~~l~~----l----------lg~kg~-~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSS----L----------LGRKGS-LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cCCcccchHHHHHHHHHHHH----H----------HHhhcc-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 887555554444433 2210 0 000000 00012345667788888888899999999999888866
Q ss_pred CcH
Q 022442 191 DAN 193 (297)
Q Consensus 191 ~~~ 193 (297)
..-
T Consensus 337 ~~W 339 (374)
T PF13281_consen 337 PAW 339 (374)
T ss_pred cch
Confidence 544
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.015 Score=50.85 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=89.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcc---hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---SQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~---~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
+..-++.+....++++|-..+.++.+-.-++ ++ .-.+--.+.+......+.|+.++|++|..+.-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~----------- 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV----------- 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------
Confidence 4445788888999999999999888543321 01 11122345677888999999999999998731
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHH
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSV 214 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~ 214 (297)
.+| .|+.+..-..-+.=..+.-++++|+.+|++++.+--... + +-..+++|.+..++.||...
T Consensus 103 ---E~G-------spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 103 ---ECG-------SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred ---HhC-------CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 111 122222222233334566789999999999998643222 2 34678999999999999888
Q ss_pred HHHHH
Q 022442 215 LEDVL 219 (297)
Q Consensus 215 ~~~al 219 (297)
+.+-.
T Consensus 173 ~lKe~ 177 (308)
T KOG1585|consen 173 FLKEG 177 (308)
T ss_pred HHHhh
Confidence 86533
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.1 Score=48.74 Aligned_cols=159 Identities=13% Similarity=0.036 Sum_probs=102.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHH---CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINA----GDRVDSALKDMAVVMKQ---LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~Lg~~l~~---~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
...+-.-+|++.-+.+.+..-.+ -++.+...+..|.++.+ .|+.++|+..+..++........ ....++|.+
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~-d~~gL~GRI 226 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP-DTLGLLGRI 226 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh-HHHHHHHHH
Confidence 33444567888888888765555 34456677788999999 99999999999886554433222 334446766
Q ss_pred HHHc---------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 109 YKKC---------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 109 y~~~---------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
|... ...++|+..|+++.++.| ..| .-.|++.++.-.|...+..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--~~Y-------------------------~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEP--DYY-------------------------SGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCc--ccc-------------------------chHHHHHHHHHcCCcccch
Confidence 6542 357889999999998864 111 2245555555555433333
Q ss_pred HHHHHHH-H----------hCCCcHHH--hHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 180 VVYQKAQ-M----------IDPDANKA--CNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 180 ~~y~~Al-~----------~~P~~~~~--~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
.-.++.. . .++...-| -.++.+..-.|++++|...+++++...
T Consensus 280 ~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 280 EELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2222222 1 11221113 357788888999999999999999873
No 241
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.16 E-value=0.00057 Score=38.61 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
.++.++|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 367899999999999999999999999998864
No 242
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.15 E-value=0.00085 Score=63.34 Aligned_cols=94 Identities=18% Similarity=0.086 Sum_probs=76.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
.-.+..+.|+.|+..|-+||++.| +.+..+.+.+.++...+.+..|+.-..+|+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldp--------------------------nca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDP--------------------------NCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCC--------------------------cceeeechhhhhheeechhhhHHHHHHhhh
Confidence 334678999999999999999865 334455677788888999999999999999
Q ss_pred HhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442 187 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 226 (297)
Q Consensus 187 ~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~ 226 (297)
+++|.... ++.-|.+....+++.+|...|+.+....|.++
T Consensus 66 e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 66 ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 99998888 77778888999999999999998888743333
No 243
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.14 E-value=0.019 Score=51.79 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=94.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ-LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~-~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~ 114 (297)
.......+..+.|...|.+|.+..+-..+.|...|.+-.. .++.+.|..+|+.+++..|.+.. +.....+.+...|+
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~--~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD--FWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHTT-
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHhCc
Confidence 3344455668999999999997777778889999999666 55555599999999999997543 33334567789999
Q ss_pred HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 115 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 115 ~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
.+.|-.+|++++...+.... ...+|......=...|+.+....+++++.+.-|+...
T Consensus 86 ~~~aR~lfer~i~~l~~~~~-----------------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQ-----------------------SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHH-----------------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHHHHHhcCchhH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999987542110 0124444444446668999999999999999888554
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0022 Score=58.07 Aligned_cols=94 Identities=21% Similarity=0.153 Sum_probs=80.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC-cHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
-|+-|++.++|..|+..|.++|+..-++ |+ ++..|+|.+.+...+|+|..|+.-..
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------------------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs 143 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCAD-----------------------PDLNAVLYTNRAAAQLYLGNYRSALNDCS 143 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------------------ccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999873211 11 23478899999999999999999999
Q ss_pred HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|+.++|++.. .+.=+.|+..+.++++|..+++..+..
T Consensus 144 ~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 144 AALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999998 888899999999999999998877654
No 245
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.15 Score=47.64 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=66.3
Q ss_pred CCCcHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHH
Q 022442 27 AGDGPYVRAK--HAQLVQKDPEAAIVLFWKAINAGDRVDSA-LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN 103 (297)
Q Consensus 27 ~~~~~~~~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~ 103 (297)
++..++..+. +..+.+|+++.|.+-|+.-+. +|..... +.-|-.--..+|..+-|+.+-+.+....|.-.+. +..
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA-~~A 193 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA-ARA 193 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH-HHH
Confidence 4444554443 456789999999999976554 4554321 2233344467799999999999999999974332 222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
.| ......|+++.|+++.......
T Consensus 194 tL-e~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 194 TL-EARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HH-HHHHhcCChHHHHHHHHHHHHH
Confidence 23 3447899999999988876654
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.98 E-value=0.063 Score=53.09 Aligned_cols=178 Identities=20% Similarity=0.134 Sum_probs=113.5
Q ss_pred cccccccchhhhhhhhhcCC--CCCcHHHHHHHHHH-----HcCCHHHHHHHHHHHHH-------cCCChHHHHHHHHHH
Q 022442 7 NKKIFSSKKEDLFHVIHKVP--AGDGPYVRAKHAQL-----VQKDPEAAIVLFWKAIN-------AGDRVDSALKDMAVV 72 (297)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~g~~~~A~~~~~~al~-------~~p~~~~a~~~Lg~~ 72 (297)
+.+.++.+..++|+.....- ....+-..++.++. ..+|++.|+.+|+.+.. .. .+.+.+.+|.+
T Consensus 220 ~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~ 297 (552)
T KOG1550|consen 220 NERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRL 297 (552)
T ss_pred cccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHH
Confidence 33333334445554443332 23345555666544 45789999999999877 33 45577889999
Q ss_pred HHHCC-----ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhchhhhhcCcchhHHh
Q 022442 73 MKQLD-----RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG---KVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR 144 (297)
Q Consensus 73 l~~~g-----~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g---~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~ 144 (297)
|.+.. +...|..+|.++......+++ ..||.+|..-. ++..|...|..|...
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~----~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---------------- 357 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKAAELGNPDAQ----YLLGVLYETGTKERDYRRAFEYYSLAAKA---------------- 357 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHHHhcCCchHH----HHHHHHHHcCCccccHHHHHHHHHHHHHc----------------
Confidence 98864 677799999998887665333 33566655444 356788888777764
Q ss_pred hhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHHHhHHHHHHH-HcCCHHHHHHHHHHHH
Q 022442 145 SHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANKACNLGLCLI-KRTRYNEARSVLEDVL 219 (297)
Q Consensus 145 ~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~-~~g~~~eA~~~~~~al 219 (297)
.+..+..++|.+|.. ..+...|..+|++|.+..+-.. ...++.++. ..+++..+...+....
T Consensus 358 ------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A-~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 358 ------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSA-AYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred ------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhh-HHHHHHHHHHccccccHHHHHHHHHH
Confidence 245678888888865 3689999999999999983222 233332222 1177766666554433
No 247
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.01 Score=51.80 Aligned_cols=106 Identities=18% Similarity=-0.019 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHh--------hCCcc--h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRG--------LCSKQ--S------QESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~--------~~P~~--~------~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
..+++.-|+-+..+|+|.||+..|+.++. -.|.+ + ...+..+...++...|+|=++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 35678889999999999999999998753 23432 1 12334445778888999999999999988
Q ss_pred HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
... |.+..+++..|.++...-+..+|.+-|.++|+++|.-..
T Consensus 258 ~~~--------------------------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHH--------------------------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcC--------------------------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 874 356678999999999999999999999999999998764
No 248
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.92 E-value=0.0017 Score=38.44 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P 94 (297)
.+++.+|.++.++|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3456666666666666666666666666655
No 249
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.91 E-value=0.00095 Score=60.60 Aligned_cols=90 Identities=20% Similarity=0.138 Sum_probs=75.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
++.+|.++.|++.|..+|.++|..+..+..-+.++..+++...||.=|..++.++|+.+... -.-+...+.+|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y--kfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY--KFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc--chhhHHHHHhhchHHH
Confidence 45789999999999999999999999999999999999999999999999999999743322 2235566788999999
Q ss_pred HHHHHHHHHhhc
Q 022442 119 IEMLKRKLRLIY 130 (297)
Q Consensus 119 i~~~~~al~~~p 130 (297)
...++.+.++..
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 999999998853
No 250
>PRK10941 hypothetical protein; Provisional
Probab=96.90 E-value=0.013 Score=52.49 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 98 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~ 98 (297)
...+|..+..+++++.|+.+.+..+.++|+++.-+...|.+|.++|.+..|+.-++..++.+|+++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 5566778889999999999999999999999999999999999999999999999999999998643
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.86 E-value=0.0025 Score=39.28 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
.++++||.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 47888999999999999999999998875
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.86 E-value=0.0021 Score=38.97 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=14.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
||.+|.++|++++|+.+|+++|.+
T Consensus 5 Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 5 LGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566666666666666666665544
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.84 E-value=0.0016 Score=38.06 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
++++.+|.++..+|++++|+..|++++...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 46788888888888888888888888888885
No 254
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.066 Score=54.09 Aligned_cols=163 Identities=12% Similarity=0.059 Sum_probs=91.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
..-|-.++|..+|++--+ +-.|-.+|..+|++++|.++-+.--.+.-. +-++..+.-+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHhhccHHHHH
Confidence 344455555555554322 233455666667777766665443222222 11222344446777777777
Q ss_pred HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhc-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----------
Q 022442 120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV-RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI---------- 188 (297)
Q Consensus 120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l-~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~---------- 188 (297)
+.|+++=.- .-+.+ +.....+.....-+ ...++..|.--|.-+...|+.+.|+.+|..|-+.
T Consensus 879 eyyEK~~~h--afev~-----rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 879 EYYEKAGVH--AFEVF-----RMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ 951 (1416)
T ss_pred HHHHhcCCh--HHHHH-----HHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence 777774221 00000 00000011000000 1123445566688888899999999999988653
Q ss_pred -----------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 189 -----------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 189 -----------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
...+.. -+.||.-|...|++.+|+..|.++-..
T Consensus 952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 122333 578999999999999999999887654
No 255
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.047 Score=49.19 Aligned_cols=129 Identities=11% Similarity=-0.023 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442 65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK-CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 143 (297)
Q Consensus 65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~-~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~ 143 (297)
+|..+.....+.+..+.|..+|.+++...+-.. .++...|.+-.. .++.+-|..+|+++++..|
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~------------- 67 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKFP------------- 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-------------
Confidence 455566677777779999999999986544322 345455666455 4555559999999999854
Q ss_pred hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.+...+......+...|+.+.|..+|++++..-|... . |......=.+.|+.+....+.+++.
T Consensus 68 -------------~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 68 -------------SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp -------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2445666666788899999999999999999877766 3 6667777788899999999998888
Q ss_pred hc
Q 022442 220 YG 221 (297)
Q Consensus 220 ~~ 221 (297)
+.
T Consensus 135 ~~ 136 (280)
T PF05843_consen 135 EL 136 (280)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 256
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.82 E-value=0.0021 Score=60.79 Aligned_cols=98 Identities=11% Similarity=-0.061 Sum_probs=63.4
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh
Q 022442 69 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 148 (297)
Q Consensus 69 Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (297)
-+.-...-+.++.|+..|.++++++|+.+ .....-+.++.+.+.+..|+.-..+|+++.|
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------------------ 69 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHDALKAIELDP------------------ 69 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHHHHhhhhcCc------------------
Confidence 34455556667777777777777777522 1221223455677777777777777777644
Q ss_pred hHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 149 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 149 ~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
....++..-|.+++.++++.+|...|++...+.|+.+.
T Consensus 70 --------~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 70 --------TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred --------hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 22345566677777778888888888888888887776
No 257
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.81 E-value=0.0041 Score=60.19 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=81.4
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh
Q 022442 69 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 148 (297)
Q Consensus 69 Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (297)
-|.-...+|+...|++++..++-..|......+.+ |+.++..-|-..+|-..+.++|.+..
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~-la~~~~~~~~~~da~~~l~q~l~~~~------------------ 673 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN-LANLLIHYGLHLDATKLLLQALAINS------------------ 673 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHH-HHHHHHHhhhhccHHHHHHHHHhhcc------------------
Confidence 35555788999999999999999999643334444 78888999999999999999998842
Q ss_pred hHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 149 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 149 ~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
.-+-.++.+|.+|..+.+.+.|+++|+.|++++|+++.
T Consensus 674 --------sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 674 --------SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred --------cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence 12236778999999999999999999999999999996
No 258
>PRK10941 hypothetical protein; Provisional
Probab=96.68 E-value=0.025 Score=50.64 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL 238 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~ 238 (297)
+.+.||=.+|.+.++++.|+.+.++.+.+.|+++. +-..|.+|.++|.+..|..-++.-++..|.++ ........
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp----~a~~ik~q 257 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP----ISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch----hHHHHHHH
Confidence 46789999999999999999999999999999998 88999999999999999999999998632222 23345555
Q ss_pred HHHHHh
Q 022442 239 LLELES 244 (297)
Q Consensus 239 l~~~~~ 244 (297)
+.++..
T Consensus 258 l~~l~~ 263 (269)
T PRK10941 258 IHSIEQ 263 (269)
T ss_pred HHHHhh
Confidence 555543
No 259
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.66 E-value=0.12 Score=40.34 Aligned_cols=101 Identities=15% Similarity=0.024 Sum_probs=62.7
Q ss_pred HHHCCChHHHHHHHHHHHhh---CCc-c------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 73 MKQLDRSEEAIEAIKSFRGL---CSK-Q------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 73 l~~~g~~~eAi~~~~~al~~---~P~-~------~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
-.+-|-|++|.+.++++... -|. . .+..-+..|+..+..+|+|++++..-.++|.... +.
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN----------RR 88 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN----------RR 88 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH----------HH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh----------hc
Confidence 34457777887777776542 232 1 1122234577888899999999999888887532 00
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
..-+.+.-.+ +..+.++.|.++..+|+.++|+..|+.+-++
T Consensus 89 GEL~qdeGkl-----WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKL-----WIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHH-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchh-----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 0001111111 2246789999999999999999999999764
No 260
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.54 E-value=0.0026 Score=57.86 Aligned_cols=118 Identities=16% Similarity=0.044 Sum_probs=70.1
Q ss_pred HHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442 74 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 153 (297)
Q Consensus 74 ~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (297)
...|.+++||+.|..++.++|..+ .++..-+.+++++++...||.-+..+++++|+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ein~D---------------------- 180 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEINPD---------------------- 180 (377)
T ss_pred hcCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhccCcc----------------------
Confidence 345777777777777777777632 34433566777777777777777777776542
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.+.-+--.|.+...+|+|++|-..++.|.+++=+-..--.|-.+.-..+..++-...+++..
T Consensus 181 ----sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 181 ----SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred ----cccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 22233445666677777777777777777765443322223333333444444444444433
No 261
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.52 E-value=0.0097 Score=39.49 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL 198 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL 198 (297)
.++.|+..+..+|+|++|..+...+|+++|+|.....|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 57889999999999999999999999999999874444
No 262
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.46 E-value=0.11 Score=45.05 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=68.1
Q ss_pred cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH----
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM---- 187 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~---- 187 (297)
...+++|++.|.-|+-... ... .+.. .-+.++..+||+|..+|+.+.....+++|++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~-----------~~~--~~~s------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~ 150 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQ-----------IKK--EKPS------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE 150 (214)
T ss_pred CCCHHHHHHHHHHHHHHHH-----------HhC--CCHH------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 4567788888877776421 000 0000 1234678899999999996665555555554
Q ss_pred ---hC--CCc----HH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 022442 188 ---ID--PDA----NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL 239 (297)
Q Consensus 188 ---~~--P~~----~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l 239 (297)
.. |.. .. .+-+|.+..+.|++++|..+|.+++... ..+....-.+.|++..
T Consensus 151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~-~~s~~~~l~~~AR~~w 211 (214)
T PF09986_consen 151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK-KASKEPKLKDMARDQW 211 (214)
T ss_pred HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHH
Confidence 33 222 23 5678999999999999999999999862 2222233344555543
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.43 E-value=0.32 Score=44.47 Aligned_cols=147 Identities=15% Similarity=0.081 Sum_probs=98.4
Q ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-h-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh-
Q 022442 59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-S-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF- 135 (297)
Q Consensus 59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~- 135 (297)
.......+..++.+..+.|+++-|..++.++...++.. . ...+...-+.++-..|+..+|+..++..+.........
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 44566788899999999999999999999998876321 0 11333445677889999999999999998832211100
Q ss_pred -cCcchhHH-----h-hhhhhHHHhcCCCcHHHHHHHHHHHHHC------CChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442 136 -NGKPTKTA-----R-SHGKKFQVSVRQETSRLLGNLAWAYMQK------TNFMAAEVVYQKAQMIDPDANK-ACNLGLC 201 (297)
Q Consensus 136 -~~~~~~~~-----~-~~~~~~~~~l~p~~~~~l~nLg~~y~~~------g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~ 201 (297)
........ . .........-....+.++..+|.....+ +..++++..|++|+.++|+... |..+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 00000000 0 0000000000011346788899999888 9999999999999999999998 8888887
Q ss_pred HHHc
Q 022442 202 LIKR 205 (297)
Q Consensus 202 l~~~ 205 (297)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7554
No 264
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.31 E-value=0.035 Score=41.14 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 178 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 178 A~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+..++++++.+|++.. .+.||..+...|++++|++.+-.++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35567777777888777 777888888888888888877777775
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.27 E-value=0.065 Score=43.94 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
....+..+..+-.+.++.+++..++..+.-+.|... .+...-|.++...|++.+|+.+++.+....
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~--e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~------------ 74 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP--ELDLFDGWLHIVRGDWDDALRLLRELEERA------------ 74 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHhCCHHHHHHHHHHHhccC------------
Confidence 345566777777788888888888888888888743 455556788888899999998888865542
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~ 176 (297)
|.++.+-.-++.|+..+|+.+
T Consensus 75 --------------~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 75 --------------PGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --------------CCChHHHHHHHHHHHHcCChH
Confidence 233445566788887777654
No 266
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.6 Score=44.77 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=115.7
Q ss_pred HHHcCCHHHHHHHHHHHHH---cCCC-------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-chHHHHHHHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAIN---AGDR-------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLID 107 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~---~~p~-------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~~~~~l~~~L~~ 107 (297)
.+..|++.+|+.......+ ..|. .+..+..+|.-...-|.+++|...|..+.++-.. +-+.....+|+.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 4578999999988887766 3454 3456777899999999999999999998876553 334455567899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh-chh-hhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLI-YQG-EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~-p~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
.|.+.|+.+.-- ++++.. |+. ..+.+ + .. -..+++--|...+.++++.||....++.
T Consensus 413 ~YL~~~~~ed~y----~~ld~i~p~nt~s~ss--------q--~l-------~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 413 SYLRIGDAEDLY----KALDLIGPLNTNSLSS--------Q--RL-------EASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred HHHHhccHHHHH----HHHHhcCCCCCCcchH--------H--HH-------HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999988766544 344433 221 00000 0 00 1236777888899999999999999999
Q ss_pred HHhCCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 186 QMIDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 186 l~~~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
|++. +..+ ..-||.+....|+..|+....+-++...
T Consensus 472 Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 472 LKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred Hhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 9987 2221 2347888889999999999999888764
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.16 E-value=0.093 Score=43.04 Aligned_cols=82 Identities=10% Similarity=-0.031 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
......+.+..++.+.+..++...--+.|+.++.-..-|.+++..|++.+|+.+++.+....|..+. ..-+++.++..
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~--~kALlA~CL~~ 90 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY--AKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH--HHHHHHHHHHH
Confidence 4445566778899999999998777799999999999999999999999999999998888776332 22335666666
Q ss_pred cCCH
Q 022442 112 CGKV 115 (297)
Q Consensus 112 ~g~~ 115 (297)
+|+.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 6654
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.12 E-value=0.33 Score=45.39 Aligned_cols=35 Identities=23% Similarity=0.115 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHCCCh---------------HHHHHHHHHHHHhCCCcHH
Q 022442 160 RLLGNLAWAYMQKTNF---------------MAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~---------------~eA~~~y~~Al~~~P~~~~ 194 (297)
..-+..+.++..+++- ++|-..+++|+..-|.-..
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 4567788889999888 9999999999998887654
No 269
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.09 E-value=0.87 Score=40.77 Aligned_cols=148 Identities=15% Similarity=0.038 Sum_probs=105.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH----c
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----C 112 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~----g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~----~ 112 (297)
..+++..|..++.++-... .+.+...++.++... .+..+|+..|+.+....-. .....||.+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~----~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA----EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH----HHHHhHHHHHhcCCCcc
Confidence 5678999999999887733 236778888888665 3688899999866554322 233346767666 4
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC-------ChHHHHHHHHHH
Q 022442 113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-------NFMAAEVVYQKA 185 (297)
Q Consensus 113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g-------~~~eA~~~y~~A 185 (297)
.+..+|...|+++.+...... ..+..+||.+|..-. +...|+..|++|
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a-------------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA-------------------------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH-------------------------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 489999999999988731100 123677777776642 334899999999
Q ss_pred HHhCCCcHH-HhHHHHHHHHc-C---CHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANK-ACNLGLCLIKR-T---RYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~-g---~~~eA~~~~~~al~~ 221 (297)
-... ++. ..+||.+|..- | ++.+|..+|.++.+.
T Consensus 182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 8876 666 78899888553 3 899999999999985
No 270
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.07 E-value=0.16 Score=51.39 Aligned_cols=61 Identities=20% Similarity=0.030 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHH----------HHhCCCcH----------H-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKA----------QMIDPDAN----------K-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~A----------l~~~P~~~----------~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
.++++.+.-+...++.+.|+++|+++ |.-+|... . |-.-|..+...|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 47889999999999999999999985 23344332 2 334688889999999999999987
Q ss_pred Hh
Q 022442 219 LY 220 (297)
Q Consensus 219 l~ 220 (297)
-.
T Consensus 939 ~D 940 (1416)
T KOG3617|consen 939 KD 940 (1416)
T ss_pred hh
Confidence 65
No 271
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.84 E-value=0.013 Score=32.65 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
++..+|.++..+|++++|+..+++++...|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566677777777777777777766666553
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.83 E-value=0.37 Score=47.72 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-----CChHHHHHHHHHHHh-------hC-CcchHHHHHHHHHHHHH
Q 022442 44 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-----DRSEEAIEAIKSFRG-------LC-SKQSQESLDNVLIDLYK 110 (297)
Q Consensus 44 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~-----g~~~eAi~~~~~al~-------~~-P~~~~~~l~~~L~~ly~ 110 (297)
+...|..+|+.+... .+..+...+|.++..- .+.+.|+..++.+.. .. |. ..+-+|.+|.
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~-----a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP-----AQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc-----cccHHHHHHh
Confidence 356799999988775 4556778888888665 589999999988766 22 21 2233677777
Q ss_pred HcC-----CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC---ChHHHHHHH
Q 022442 111 KCG-----KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT---NFMAAEVVY 182 (297)
Q Consensus 111 ~~g-----~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g---~~~eA~~~y 182 (297)
+.. +.+.|..+|.++-.. +++++.+.||.+|..-. ++..|..+|
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~----------------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy 351 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAEL----------------------------GNPDAQYLLGVLYETGTKERDYRRAFEYY 351 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhc----------------------------CCchHHHHHHHHHHcCCccccHHHHHHHH
Confidence 743 677788888888776 25568899999998766 578999999
Q ss_pred HHHHHhCCCcHH-HhHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 022442 183 QKAQMIDPDANK-ACNLGLCLIKR----TRYNEARSVLEDVLYG 221 (297)
Q Consensus 183 ~~Al~~~P~~~~-~~nLg~~l~~~----g~~~eA~~~~~~al~~ 221 (297)
..|... .+.. .++|+.||..- -+.+.|..++.++.+.
T Consensus 352 ~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 352 SLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 999765 5555 78888887643 3889999999999886
No 273
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.83 E-value=0.33 Score=41.93 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=74.2
Q ss_pred HHCCChHHHHHHHHHHHhh----CCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh
Q 022442 74 KQLDRSEEAIEAIKSFRGL----CSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 148 (297)
Q Consensus 74 ~~~g~~~eAi~~~~~al~~----~P~-~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (297)
...-.+++|++.|.-++-. ..+ .....+..-++++|+.+|+.+.....+++|++.... ++.. .
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~--a~~~--------e-- 155 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE--AYEN--------E-- 155 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH--HHHh--------C--
Confidence 3445778888888765421 212 112345566899999999999888888888887421 1100 0
Q ss_pred hHHHhcCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH--HHhHHHHH
Q 022442 149 KFQVSVRQ-ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--KACNLGLC 201 (297)
Q Consensus 149 ~~~~~l~p-~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~--~~~nLg~~ 201 (297)
.+ .+.+ +...+++-+|.++.++|++++|...|.+++...-.+. ...+++.=
T Consensus 156 ~~--~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 156 DF--PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred cC--CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 00 0000 1234778899999999999999999999998654443 25566543
No 274
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.67 E-value=0.02 Score=49.56 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=54.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
....+|.+.|.++|.+++.+-|.+..-|+.+|...-+.|+++.|.++|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4467999999999999999999999999999999999999999999999999999974
No 275
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.66 E-value=0.08 Score=51.61 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=78.8
Q ss_pred HHHHcCCChHHHHHHHHHH-HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442 54 KAINAGDRVDSALKDMAVV-MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 132 (297)
Q Consensus 54 ~al~~~p~~~~a~~~Lg~~-l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~ 132 (297)
.+++..|.++. +++++.. ...+|+.-+|..++..++...|+.........||.++.+.|...+|--++..|+.-.|
T Consensus 204 ~glq~~~~sw~-lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~-- 280 (886)
T KOG4507|consen 204 EGLQKNTSSWV-LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD-- 280 (886)
T ss_pred HhhhcCchhHH-HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc--
Confidence 34445555554 4444444 4778888888888888888777633333445578888888888888877766665432
Q ss_pred hhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 133 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
....-++.+|.+|.++|.+.-.+.+|..+++.+|...
T Consensus 281 ------------------------~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 281 ------------------------FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred ------------------------cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 1112256788899999999999999999999888765
No 276
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.13 Score=46.98 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhh-CCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 65 ALKDMAVVMKQLDRSEEAIEAIKSFRGL-CSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~-~P~-~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
-+..-|+-|.+..+|..|+..|.+.++. +++ +....++++-+.+....|+|..|+.-..+++.+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P------------ 150 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP------------ 150 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc------------
Confidence 3456799999999999999999998874 443 34556777778888888999999998888888754
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
.+..+++.=+.|+.++.++++|....+..+.++-+..
T Consensus 151 --------------~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 151 --------------THLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred --------------chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 4556777788899999998888888888777655443
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.63 E-value=0.24 Score=41.47 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
...++..+|..|.+.|+.++|+++|.+++..+.. .........+..+....|++......+.++-.+...+..+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~----- 109 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW----- 109 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH-----
Confidence 4567889999999999999999999999887754 1223444556778888999999999999987764211000
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
.. .......-|..++..++|.+|-..|-.++.-.
T Consensus 110 ------~~---------~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 110 ------ER---------RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred ------HH---------HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 00 01133456777788899999999988876543
No 278
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.50 E-value=0.032 Score=34.08 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
||.+|...|++++|+.++++++.+
T Consensus 8 la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 8 LANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcchhhHHHHHHHHH
Confidence 444455555555555555555544
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.31 E-value=0.19 Score=40.65 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
..+..+..+-...++.+++..++..+.-+.|+.. .+...-|.++...|++++|+.+++...+-
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~--e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK--ELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc--ccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3455555555668999999999999888999743 45556788899999999999999886664
No 280
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.27 E-value=0.065 Score=48.43 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=55.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 226 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~ 226 (297)
.+.+.-....|+.++|...|..|+.++|+++. ...+|.+.....+.-+|-.+|-+++...|..+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 34455567789999999999999999999999 88999999999999999999999999854444
No 281
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.77 Score=44.92 Aligned_cols=141 Identities=14% Similarity=0.017 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHH--HHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKD--MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~--Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~ 120 (297)
|...-++.++...+..+|.+++.+.. +.+.+...+....++-.++..+..+|.+. ....+|+..+...|..-.++.
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC--PAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc--hHHHHHHHHHHHhhhHHHHHH
Confidence 33344777787777888988887433 58888899999999999999999999853 344556666666777666665
Q ss_pred HHHH-HHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHH
Q 022442 121 MLKR-KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL 198 (297)
Q Consensus 121 ~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nL 198 (297)
.+.+ +....|....+.+ +...++.+|.....+|+..++.....+++++.|.++. ...+
T Consensus 123 ~~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 123 DISEIAEWLSPDNAEFLG--------------------HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHHHHHHhcCcchHHHHh--------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 5555 5555442111100 0112233799999999999999999999999999976 5455
Q ss_pred HHHHHHc
Q 022442 199 GLCLIKR 205 (297)
Q Consensus 199 g~~l~~~ 205 (297)
.....++
T Consensus 183 ~~~r~~~ 189 (620)
T COG3914 183 MTARQEQ 189 (620)
T ss_pred HHHHHHh
Confidence 4444333
No 282
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=2 Score=41.40 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=116.0
Q ss_pred ccccccchhhhhhhhhcCCCCCcHHHHHHHH--HHHcCCHHHHHHHHHHHHHcC------CChH--------HHHHHHHH
Q 022442 8 KKIFSSKKEDLFHVIHKVPAGDGPYVRAKHA--QLVQKDPEAAIVLFWKAINAG------DRVD--------SALKDMAV 71 (297)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~A~~~~~~al~~~------p~~~--------~a~~~Lg~ 71 (297)
-|++++-..+.|+-+.|-.-. +++.+.-+ ...+|-+++|.++-+++|..- |... -.+.++..
T Consensus 254 e~ilgsps~~l~~wlpkeqic--aLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~ 331 (629)
T KOG2300|consen 254 EKILGSPSPILFEWLPKEQIC--ALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVM 331 (629)
T ss_pred ccccCCCChHHHhhccHhhhH--hhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 355555566666554442111 22222111 124455666666666666532 2111 12445677
Q ss_pred HHHHCCChHHHHHHHHHHHhhC---Cc-----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442 72 VMKQLDRSEEAIEAIKSFRGLC---SK-----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 143 (297)
Q Consensus 72 ~l~~~g~~~eAi~~~~~al~~~---P~-----~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~ 143 (297)
+-...|++.+|+..+..+...+ |. .....++.++|.-...-|.++.|...|..+++.....
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~----------- 400 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI----------- 400 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----------
Confidence 7788999999999988776543 43 1123456777777778899999999999999974210
Q ss_pred hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH----------H-HhHHHHHHHHcCCHHHHH
Q 022442 144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----------K-ACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~----------~-~~nLg~~l~~~g~~~eA~ 212 (297)
+ . .+-+-.|++.+|...|+-+. .|+-.=.+.|.|. . .+--|.....++++.||.
T Consensus 401 ----d-l-------~a~~nlnlAi~YL~~~~~ed---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK 465 (629)
T KOG2300|consen 401 ----D-L-------QAFCNLNLAISYLRIGDAED---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAK 465 (629)
T ss_pred ----H-H-------HHHHHHhHHHHHHHhccHHH---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 0 0 12245689999999776543 4443334677643 1 234577778999999999
Q ss_pred HHHHHHHhc
Q 022442 213 SVLEDVLYG 221 (297)
Q Consensus 213 ~~~~~al~~ 221 (297)
..+++.+..
T Consensus 466 ~~l~e~Lkm 474 (629)
T KOG2300|consen 466 RFLRETLKM 474 (629)
T ss_pred HHHHHHHhh
Confidence 999999986
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.23 E-value=2.4 Score=38.88 Aligned_cols=28 Identities=14% Similarity=0.002 Sum_probs=20.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLYGRI 223 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~~~~ 223 (297)
..+...+...|-.+.|+..++.+++.+.
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 4567777777888888888888887653
No 284
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.18 E-value=0.041 Score=49.67 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=54.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
..+.|+.++|..+|+.|+++. |++++++..+|.....-.+.-+|-.+|-+||.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlala--------------------------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALA--------------------------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHhccchHHHHHHHHHHHhcC--------------------------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 357788888888888888774 578899999999999999999999999999999
Q ss_pred CCCcHH-HhH
Q 022442 189 DPDANK-ACN 197 (297)
Q Consensus 189 ~P~~~~-~~n 197 (297)
+|.|.. ..|
T Consensus 180 sP~nseALvn 189 (472)
T KOG3824|consen 180 SPGNSEALVN 189 (472)
T ss_pred CCCchHHHhh
Confidence 999986 544
No 285
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.02 E-value=0.23 Score=52.50 Aligned_cols=172 Identities=16% Similarity=0.063 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHcCCHHHHHH------HHHHHH-HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH-------hhCCcc
Q 022442 31 PYVRAKHAQLVQKDPEAAIV------LFWKAI-NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR-------GLCSKQ 96 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~------~~~~al-~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al-------~~~P~~ 96 (297)
-++..++..+.+|.+.+|.+ ++...- .+.|.....+..|+.++...|++++|+..-+++. ..++.+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 46777788888888887777 554322 3578888999999999999999999999766543 333321
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442 97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~ 176 (297)
.. .-+..++......+....|...+.+++.+.. . ..+ ...|..+.+..|++.++...++++
T Consensus 1014 t~-~~y~nlal~~f~~~~~~~al~~~~ra~~l~~---------L----s~g-----e~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1014 TK-LAYGNLALYEFAVKNLSGALKSLNRALKLKL---------L----SSG-----EDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred HH-HHhhHHHHHHHhccCccchhhhHHHHHHhhc---------c----ccC-----CCCCchhhhhhHHHHHHhhHHHHH
Confidence 11 1223356667778888899999988888731 0 000 123555567789999999999999
Q ss_pred HHHHHHHHHHHhC-----CCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 177 AAEVVYQKAQMID-----PDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 177 eA~~~y~~Al~~~-----P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.|+.+.+.|+..+ |... . ...++.+...+|++..|....+.....
T Consensus 1075 ~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1075 TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9999999999864 2222 1 345677777777777776666655443
No 286
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=95.01 E-value=0.066 Score=34.03 Aligned_cols=41 Identities=29% Similarity=0.389 Sum_probs=29.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE 241 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~ 241 (297)
++|+.+|+.+|+++.|...+++++.. ++ .....+|..++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~---~~--~~q~~eA~~LL~~ 43 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE---GD--EAQRQEARALLAQ 43 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc---CC--HHHHHHHHHHHhc
Confidence 57889999999999999999998863 22 2333566666653
No 287
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.00 E-value=0.03 Score=31.20 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHH
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
++.+||.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56677777888888887777765
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.86 E-value=1.6 Score=39.91 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-c----------
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGD----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-Q---------- 96 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~---------- 96 (297)
......+..+.|.++.|...+.++...++ ..+...+.-+.++-..|+..+|+..++..+..... .
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELK 228 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHh
Confidence 33344556789999999999999888552 24567778899999999999999999887761110 0
Q ss_pred ---------------------hHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhc
Q 022442 97 ---------------------SQESLDNVLIDLYKKC------GKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 97 ---------------------~~~~l~~~L~~ly~~~------g~~~eAi~~~~~al~~~p 130 (297)
........+|...... +..++++..|+++++..|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 229 SGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred hccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 0112233445555555 777788888888887754
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.83 E-value=0.14 Score=48.96 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=93.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHHHcCCHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-KQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P-~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
++..||.-.|-.-.+.+++..|..|......+.+...+|.|+.+...+.-+-..-. .+. ... ++-.-+...|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~--~~~-~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS--TLR-CRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch--HHH-HHHHhhhchhhHHH
Confidence 56789999999999999999999999888889999999999999988765433222 111 122 23334578899999
Q ss_pred HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-Hh
Q 022442 118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC 196 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~ 196 (297)
|...-.-.|.-. -++++++.--+..-.++|-+++|...+++.+.++|.... |.
T Consensus 376 a~s~a~~~l~~e--------------------------ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 376 ALSTAEMMLSNE--------------------------IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHHHhccc--------------------------cCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 987655544321 123344444444556778899999999999999886554 54
Q ss_pred H
Q 022442 197 N 197 (297)
Q Consensus 197 n 197 (297)
|
T Consensus 430 ~ 430 (831)
T PRK15180 430 N 430 (831)
T ss_pred e
Confidence 4
No 290
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.71 E-value=0.2 Score=37.19 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=49.3
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
.+.|++.+|++.+.+............ ... ....++.++|.++...|++++|+..+++|+++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~---------~~~--------~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSS---------SNS--------GLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccch---------hhH--------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 578999999999999888742110000 000 123468889999999999999999999999986
Q ss_pred CCcHH
Q 022442 190 PDANK 194 (297)
Q Consensus 190 P~~~~ 194 (297)
....+
T Consensus 72 re~~D 76 (94)
T PF12862_consen 72 RENGD 76 (94)
T ss_pred HHHCC
Confidence 65443
No 291
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.65 E-value=0.15 Score=37.87 Aligned_cols=73 Identities=19% Similarity=0.105 Sum_probs=53.5
Q ss_pred HHCCChHHHHHHHHHHHHhCCCcH---------H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 022442 170 MQKTNFMAAEVVYQKAQMIDPDAN---------K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL 239 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~Al~~~P~~~---------~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l 239 (297)
.+.|+|.+|++.+.+.++...... . ..++|.+....|++++|+..+++++... +...+...+..+...+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A-re~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA-RENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHH
Confidence 578999999999999998643221 2 5789999999999999999999999862 2233444555555555
Q ss_pred HHHH
Q 022442 240 LELE 243 (297)
Q Consensus 240 ~~~~ 243 (297)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 5443
No 292
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.59 E-value=0.19 Score=48.12 Aligned_cols=102 Identities=10% Similarity=0.049 Sum_probs=71.5
Q ss_pred CCcHHHHHH-HHHHHcCCHHHHHHHHHHH-HHcCCC------hHH--HHHHHHHHHHHCCChHHHHHHHHHHHh-h----
Q 022442 28 GDGPYVRAK-HAQLVQKDPEAAIVLFWKA-INAGDR------VDS--ALKDMAVVMKQLDRSEEAIEAIKSFRG-L---- 92 (297)
Q Consensus 28 ~~~~~~~~~-~~~~~~g~~~~A~~~~~~a-l~~~p~------~~~--a~~~Lg~~l~~~g~~~eAi~~~~~al~-~---- 92 (297)
+..++.-+| +.....|++.+|.+++-.. +...|. ... .|.|||.++.++|.|.-++..|.++++ .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 334444443 5666789999999887532 112222 222 367999999999999999999999885 1
Q ss_pred ----CCc-------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 93 ----CSK-------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 93 ----~P~-------~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
-|. +-...+.+++|.+|...||.-+|.++|.+++...
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 121 0012334558999999999999999999999874
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.47 E-value=1.2 Score=39.82 Aligned_cols=210 Identities=16% Similarity=0.214 Sum_probs=121.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-----chHHHHHHHHHHHHH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-----QSQESLDNVLIDLYK 110 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-----~~~~~l~~~L~~ly~ 110 (297)
+.+.++++|+.-|++++.+.+... .|+..+-.+...+|++++-...|++++..-.. ...-....+| +--.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~Il-DyiS 116 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSIL-DYIS 116 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHh
Confidence 356689999999999999887753 36777888899999999999888876543211 1111222222 2223
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH----HHHHHHHHHCCChHHHHHHHHHHH
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l----~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
...+.+--...|+-.|+.-.+ + .+.+.| .-||.+|+..|.|..-.+.+++.-
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkd--A----------------------KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKD--A----------------------KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHh--h----------------------hcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 444555555555555543110 0 011122 348899999988888777776654
Q ss_pred H-hCCCcH-----------HHhHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCCCCchhh
Q 022442 187 M-IDPDAN-----------KACNL-GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSD 253 (297)
Q Consensus 187 ~-~~P~~~-----------~~~nL-g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 253 (297)
. +..++. ..+.| ...|..+.+-..-..+|++++... ...+++. ..-..++|++...-.+-.+
T Consensus 173 ~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK-SAIPHPl----ImGvIRECGGKMHlreg~f 247 (440)
T KOG1464|consen 173 QSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK-SAIPHPL----IMGVIRECGGKMHLREGEF 247 (440)
T ss_pred HHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh-ccCCchH----HHhHHHHcCCccccccchH
Confidence 3 221111 12333 345666677777778888888752 2234454 5556677765443222222
Q ss_pred hhcccchhHHHHHHHHHHhhcCcccCCCc
Q 022442 254 LLGLNLEDEFVNGLEEMVRVWAPSRSKRL 282 (297)
Q Consensus 254 ~~~~~~~d~~~~~~~~~l~~~~~yr~~~~ 282 (297)
.-+ +.+|-++|.++-..-.|-|..|+
T Consensus 248 e~A---hTDFFEAFKNYDEsGspRRttCL 273 (440)
T KOG1464|consen 248 EKA---HTDFFEAFKNYDESGSPRRTTCL 273 (440)
T ss_pred HHH---HhHHHHHHhcccccCCcchhHHH
Confidence 222 36788888887433335555555
No 294
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.44 E-value=3.4 Score=42.47 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=100.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLI 106 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~ 106 (297)
..+.+..|++++|+++.+.++..=|.. .-++..+|.+.+-.|++++|..+.+.+.+..-. .-.....+.-+
T Consensus 465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s 544 (894)
T COG2909 465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 346778899999999999999855543 235667889999999999999988887666332 11111223346
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCc---HHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET---SRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~---~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
.++..+|+..-|...-...+... .+ +.-.|-+ ..+...+.++|.. ++.+....+
T Consensus 545 ~il~~qGq~~~a~~~~~~~~~~~---------------q~-----l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear 601 (894)
T COG2909 545 EILEAQGQVARAEQEKAFNLIRE---------------QH-----LEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEAR 601 (894)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH---------------HH-----hhhcccchhHHHHHHHHHHHHHH---HhhhhHHhh
Confidence 77788884333332221111110 00 0000111 1234445555554 777777777
Q ss_pred HHHHhC----CCcH--H--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 184 KAQMID----PDAN--K--ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 184 ~Al~~~----P~~~--~--~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+++. |... . .++|+.++...|++++|...+.++...
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 777653 3222 2 237899999999999999988887765
No 295
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.41 E-value=0.15 Score=30.88 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHH--HHHHHHhCCCc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVV--YQKAQMIDPDA 192 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~--y~~Al~~~P~~ 192 (297)
+.+..+|..+.++|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3567889999999999999999 66888887764
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.38 E-value=5.4 Score=41.06 Aligned_cols=162 Identities=15% Similarity=0.065 Sum_probs=105.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHH-HHc--CCC------------------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442 35 AKHAQLVQKDPEAAIVLFWKA-INA--GDR------------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC 93 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~a-l~~--~p~------------------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~ 93 (297)
+..-++..||++.|..+.++- .++ ..+ .|.....-+-.+..+.+++||..++.++...-
T Consensus 366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 344456788888888877765 111 111 12223334566778899999999998876543
Q ss_pred Cc-------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442 94 SK-------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA 166 (297)
Q Consensus 94 P~-------~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg 166 (297)
|. +-...+.-.-+.+....|++++|++.-+.++..-|....+. -..++.++|
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~---------------------r~~~~sv~~ 504 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS---------------------RIVALSVLG 504 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh---------------------hhhhhhhhh
Confidence 32 11112333345677888999999999999999866332211 112677899
Q ss_pred HHHHHCCChHHHHHHHHHHHHhCC----CcHH-Hh--HHHHHHHHcC--CHHHHHHHHHH
Q 022442 167 WAYMQKTNFMAAEVVYQKAQMIDP----DANK-AC--NLGLCLIKRT--RYNEARSVLED 217 (297)
Q Consensus 167 ~~y~~~g~~~eA~~~y~~Al~~~P----~~~~-~~--nLg~~l~~~g--~~~eA~~~~~~ 217 (297)
.+..-.|++++|..+.+.+.++.- -.-. |. .-+.++..+| .+++....+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999998843 2223 33 3478889999 33444444443
No 297
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.31 E-value=4.2 Score=37.31 Aligned_cols=165 Identities=11% Similarity=-0.000 Sum_probs=107.5
Q ss_pred hhhhhhhhcCCCCCcHHHHHHHHHH---H---------cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHH
Q 022442 16 EDLFHVIHKVPAGDGPYVRAKHAQL---V---------QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI 83 (297)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi 83 (297)
.++...+.+.|.+..+-......+- . ..-.+.-+..|++|++.+|+....+..+=....+....++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4555677777776666544432221 1 011456788999999999999988887777888888899999
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYK--KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~--~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 161 (297)
..+++++..+|++.. -|...|-.... ..-.+++....|.++|........-. ...+.... .++.....+
T Consensus 86 ~~we~~l~~~~~~~~-LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~------~~~~~~~~--~~e~~~l~v 156 (321)
T PF08424_consen 86 KKWEELLFKNPGSPE-LWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR------MTSHPDLP--ELEEFMLYV 156 (321)
T ss_pred HHHHHHHHHCCCChH-HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc------cccccchh--hHHHHHHHH
Confidence 999999999997532 22222222222 23468899999999998743110000 00000000 000012246
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
+..+...+.+.|-.+.|+.+++-.++++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 7788999999999999999999999986
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.22 E-value=0.66 Score=37.62 Aligned_cols=78 Identities=10% Similarity=-0.032 Sum_probs=59.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~ 114 (297)
..-+.+...+++++..++...--+.|+.++.-..-|.++++.|++.||+.+++....-.|..+. .--+++.++..+|+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~--~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY--GKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH--HHHHHHHHHHhcCC
Confidence 3345667899999999998766699999999999999999999999999999998877664221 11224455555554
No 299
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=1.3 Score=46.12 Aligned_cols=180 Identities=15% Similarity=0.128 Sum_probs=117.7
Q ss_pred cchhhhhhhhhcCCCCCcHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442 13 SKKEDLFHVIHKVPAGDGPYVRAKHAQL-VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG 91 (297)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~ 91 (297)
.--+|+|...++.. .+..+..+.+ .-+..+.|.++-++. +.+..|..+|.+-.+.|+..+||+.|-++
T Consensus 1062 ~LyEEAF~ifkkf~----~n~~A~~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD----MNVSAIQVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hHHHHHHHHHHHhc----ccHHHHHHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 33578888887774 3445556655 337788888777653 55788999999999999999999987443
Q ss_pred hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--ch--hh-hhc-CcchhHHhhhhhhHHHhcCCCcHHHHHHH
Q 022442 92 LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI--YQ--GE-AFN-GKPTKTARSHGKKFQVSVRQETSRLLGNL 165 (297)
Q Consensus 92 ~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~--p~--~~-~~~-~~~~~~~~~~~~~~~~~l~p~~~~~l~nL 165 (297)
-+|.. +....++-.+.|.|++-+..+.-|-+.. |. ++ .+. .+..++. .... .-.-|+.+. ....
T Consensus 1131 dDps~-----y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~--elE~--fi~gpN~A~-i~~v 1200 (1666)
T KOG0985|consen 1131 DDPSN-----YLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT--ELEE--FIAGPNVAN-IQQV 1200 (1666)
T ss_pred CCcHH-----HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH--HHHH--HhcCCCchh-HHHH
Confidence 34532 1123445578899999988776654432 10 11 010 0000000 0000 112244443 3568
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|.-+...|.|+.|.-+|.- .. |..|+..+..+|+|..|.+.-+++-..
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 9999999999999888854 44 888999999999999999998887553
No 300
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.13 E-value=0.15 Score=33.83 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
+.++.+|+.+.++|+|++|...++.+++..|++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 567889999999999999999999999999984
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.81 E-value=1.6 Score=40.81 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=86.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH--HHcCCHHH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY--KKCGKVEE 117 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly--~~~g~~~e 117 (297)
+..+|++.=+.+ ++.+|-+.+++..++.++.++|++..|.+.+++++-..-. .++....... ...|+
T Consensus 21 v~~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~----~~~~~F~~~~~~~~~g~--- 89 (360)
T PF04910_consen 21 VQSHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER----AFHPSFSPFRSNLTSGN--- 89 (360)
T ss_pred HHccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHhhhhhcccccCc---
Confidence 345566544433 4567888888888888888888888888888887644322 1111000000 00000
Q ss_pred HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-cHH--
Q 022442 118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-ANK-- 194 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~-~~~-- 194 (297)
..+ | .....++.+ -.+++.....+.+.|-+..|+++.+-.+.++|+ |+-
T Consensus 90 --------~rL-~-----------~~~~eNR~f--------flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ 141 (360)
T PF04910_consen 90 --------CRL-D-----------YRRPENRQF--------FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGV 141 (360)
T ss_pred --------ccc-C-----------CccccchHH--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence 000 0 000011111 125677788889999999999999999999998 764
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 195 ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 195 ~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
.+.+=..-++.++++==++.++....
T Consensus 142 ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 142 LLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555566677788777777776554
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.66 E-value=0.79 Score=35.21 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=64.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH-HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
.-+.+.|++-+|+++.+..+.....+.... -....+|..|. ++-+-+++++-.. | .--|+++|.++
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~----~lh~~QG~if~~lA~~ten~d~k~~----y-----Ll~sve~~s~a 70 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSW----LLHRLQGTIFYKLAKKTENPDVKFR----Y-----LLGSVECFSRA 70 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchH----HHHHHHhHHHHHHHHhccCchHHHH----H-----HHHhHHHHHHH
Confidence 346789999999999999988754322000 01112222221 1111122222111 1 23478999999
Q ss_pred HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+.|+.+. .+.||.-+-..--|+++....++.|..
T Consensus 71 ~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 71 VELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 999999987 888888777777888888888888875
No 303
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.50 E-value=0.094 Score=29.11 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHH
Q 022442 65 ALKDMAVVMKQLDRSEEAIEAIK 87 (297)
Q Consensus 65 a~~~Lg~~l~~~g~~~eAi~~~~ 87 (297)
++..+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555556666666666555543
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=0.34 Score=43.06 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 97 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~ 97 (297)
++..+..+++++.|...-.+.+.++|.++.-+..-|.+|.++|-+.-|+.-++.++..+|+++
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 455677888999999999999999999998888899999999999999999998888889743
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.24 E-value=0.99 Score=38.48 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=74.9
Q ss_pred cccchhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 11 FSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGD--RVDSALKDMAVVMKQLDRSEEAIEAIKS 88 (297)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~Lg~~l~~~g~~~eAi~~~~~ 88 (297)
++-+.++.=......-++..|+ +.+.++..-.-+.|..-|-++ +..| +.++..+.||..|. .-+.++|+.++-+
T Consensus 90 ~~~s~~~l~~L~~~tk~S~dP~--llYy~Wsr~~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~ 165 (203)
T PF11207_consen 90 LLHSYQELERLQEETKNSQDPY--LLYYHWSRFGDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLR 165 (203)
T ss_pred HHHHHHHHHHHHHHHccCCCcc--HHHHHhhccCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHH
Confidence 3445555555566666677776 566677774446677666543 3333 36778888998887 5788999999999
Q ss_pred HHhhCCc--chHHHHHHHHHHHHHHcCCHHHHH
Q 022442 89 FRGLCSK--QSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 89 al~~~P~--~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
++++.+. +.+..+...|+++|.++|+++.|-
T Consensus 166 ~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 166 ALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 9987664 345567778999999999999874
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.79 E-value=1.2 Score=34.23 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
|+.+..++.||.=+-...-|+++..--+++|.+
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 445667888887776677788888888888765
No 307
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.66 E-value=11 Score=36.98 Aligned_cols=169 Identities=15% Similarity=0.060 Sum_probs=101.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc---C
Q 022442 51 LFWKAINAGDRVDSALKDMAVVMKQLDR--------------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC---G 113 (297)
Q Consensus 51 ~~~~al~~~p~~~~a~~~Lg~~l~~~g~--------------~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~---g 113 (297)
.|++++..-+-.++.|+.-+.-+...++ .+|+..+|++++..--.. ...++..+++--... +
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccc
Confidence 4566666566678888877776666666 788888999887654321 112333332211111 1
Q ss_pred CHHHHHHHHHHHHHhhchh--hhhcCcchhHHhhhhh-----hHHH-hcCCCcHHHHHHHHHH---HHHCCChHHHHHHH
Q 022442 114 KVEEQIEMLKRKLRLIYQG--EAFNGKPTKTARSHGK-----KFQV-SVRQETSRLLGNLAWA---YMQKTNFMAAEVVY 182 (297)
Q Consensus 114 ~~~eAi~~~~~al~~~p~~--~~~~~~~~~~~~~~~~-----~~~~-~l~p~~~~~l~nLg~~---y~~~g~~~eA~~~y 182 (297)
..+.--..|++++.+...+ -.++....-..+..|- .|.. --++-.. -+.-.+.+ |.-+++..-|..+|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~-hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR-HHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-chhhHHHHHHHHHhcCChhHHHHHH
Confidence 3556677788877763211 1221111001111110 0110 0001111 12223333 45589999999999
Q ss_pred HHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 183 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 183 ~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+--|...+|.+. .+.....+...|+-..|..+|++++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999999998 777888999999999999999999986
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.51 E-value=1.2 Score=39.97 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
...++..++..+...|+++.++..+++.+.++|-+.. +..|-.+|...|+...|+..|+++-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3458899999999999999999999999999999998 99999999999999999999998765
No 309
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=1.2 Score=44.06 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
+.-.++..+|..+++.|...++-.|.+.- . -+++....+|..||..+...|.|.++|++|
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~------------~--------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EA 420 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNY------------S--------DRFAKIQRALQVCYLKLEQLDNAVEVYQEA 420 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhh------------h--------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44557888999999999999987663311 0 123457889999999999999999999999
Q ss_pred HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
-+.+|.++- ..-+......-|.-++|+.+..++...
T Consensus 421 E~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 421 EEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 999999995 444455566778899999988877654
No 310
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.35 E-value=2 Score=40.66 Aligned_cols=103 Identities=16% Similarity=0.086 Sum_probs=76.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
+.-+.++|.|.-|+.-|+-+|++...+.+..--. ....++.+.+ ...+-..|..||..+++.+-|+.+-.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~---~~~~~di~~v-----aSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPF---KASAEDISSV-----ASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCC---CCChhhHHHH-----HHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 5667889999999999999999976554432100 0001111111 1124467999999999999999999999
Q ss_pred HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHH
Q 022442 186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLE 216 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~ 216 (297)
+.++|.... ++.-+.|...+.||.+|..-.-
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 8888999999999999876543
No 311
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.28 E-value=0.24 Score=30.39 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
+++..||.+-...++|++|+.-|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998863
No 312
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.11 E-value=12 Score=36.11 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHH-------HHHHHhh---------CCcchHH
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEA-------IKSFRGL---------CSKQSQE 99 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~-------~~~al~~---------~P~~~~~ 99 (297)
..++..||++++....+. -++-|..+ +-...++..+.++|.++.|+.. |+-++++ .-.-...
T Consensus 269 k~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~ 347 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDP 347 (443)
T ss_dssp HHHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTH
T ss_pred HHHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcH
Confidence 345667888886666641 12222222 2244566666777777777653 2222222 2110112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
..+..||++...+|+++-|+.+|+++=.
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 3555689999999999999999988543
No 313
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=5.9 Score=39.03 Aligned_cols=114 Identities=21% Similarity=0.081 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442 82 AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161 (297)
Q Consensus 82 Ai~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 161 (297)
++.++..-+..+|.+....+.+.+...+...+....+....+.++.. +|+++.+
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~--------------------------~~~~~~~ 103 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV--------------------------NPENCPA 103 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc--------------------------CcccchH
Confidence 45555555556665432222232455566677777777766666665 4567788
Q ss_pred HHHHHHHHHHCCChHHHHHHHHH-HHHhCCCcHH-HhH------HHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQK-AQMIDPDANK-ACN------LGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~-Al~~~P~~~~-~~n------Lg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..|||.+....|....+...+.. +....|++.. ... ++..+..+|+..++....++++..
T Consensus 104 ~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~ 171 (620)
T COG3914 104 VQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL 171 (620)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999888877777776666 9999999986 444 488888889999999999988886
No 314
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.55 E-value=9.8 Score=34.03 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=82.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCh----HHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhC----Cc-----c---
Q 022442 38 AQLVQKDPEAAIVLFWKAINA----GDRV----DSALKDMAVVMKQLD-RSEEAIEAIKSFRGLC----SK-----Q--- 96 (297)
Q Consensus 38 ~~~~~g~~~~A~~~~~~al~~----~p~~----~~a~~~Lg~~l~~~g-~~~eAi~~~~~al~~~----P~-----~--- 96 (297)
.++.+||++.|..++.|+-.. +|+. ...+++.|.-+...+ ++++|+..++++.++. +. +
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 457899999999999987663 3443 456888999999999 9999999999987773 21 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH-HHHHHHHHHCCCh
Q 022442 97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL-GNLAWAYMQKTNF 175 (297)
Q Consensus 97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l-~nLg~~y~~~g~~ 175 (297)
-.......|+.+|...+.++.... ..++++... .. -|+.+.++ ..+-.+.. .++.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~-------------~e---------~~~~~~~~~L~l~il~~-~~~~ 137 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEK-ALNALRLLE-------------SE---------YGNKPEVFLLKLEILLK-SFDE 137 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHH-------------Hh---------CCCCcHHHHHHHHHHhc-cCCh
Confidence 112334567888888887764444 222333210 00 12222333 23332223 7888
Q ss_pred HHHHHHHHHHHHhCC
Q 022442 176 MAAEVVYQKAQMIDP 190 (297)
Q Consensus 176 ~eA~~~y~~Al~~~P 190 (297)
+++.+.+++.+.--+
T Consensus 138 ~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 138 EEYEEILMRMIRSVD 152 (278)
T ss_pred hHHHHHHHHHHHhcc
Confidence 888888888887543
No 315
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.54 E-value=1 Score=35.88 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHCC---ChHHHHHHHHHHHH-hCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHH
Q 022442 160 RLLGNLAWAYMQKT---NFMAAEVVYQKAQM-IDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRK 233 (297)
Q Consensus 160 ~~l~nLg~~y~~~g---~~~eA~~~y~~Al~-~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~ 233 (297)
...++++|++.... +..+-+.+++..++ -.|+.. . .+-|+..+.+.|+|+.++.+.+..++. ++++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---e~~n~---- 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---EPNNR---- 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---CCCcH----
Confidence 46799999997654 56788999999997 556555 4 678999999999999999999999996 44433
Q ss_pred HHHHHHHHHHh
Q 022442 234 RAEELLLELES 244 (297)
Q Consensus 234 ~a~~~l~~~~~ 244 (297)
+|..+-+.++.
T Consensus 106 Qa~~Lk~~ied 116 (149)
T KOG3364|consen 106 QALELKETIED 116 (149)
T ss_pred HHHHHHHHHHH
Confidence 36666555543
No 316
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=1.8 Score=38.62 Aligned_cols=62 Identities=23% Similarity=0.207 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+.|+=.+|.+.++++.|..+-.+.+.++|+++. +..-|.+|.++|.+.-|+.-+...++.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 45678889999999999999999999999999998 999999999999999999999998875
No 317
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.17 E-value=1.2 Score=40.16 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
...++..++..+...|+++.++..+++.+..+|-+ +..+..+...|.+.|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD--EPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45577889999999999999999999999999973 455555677899999999999999997664
No 318
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.97 E-value=0.79 Score=27.69 Aligned_cols=31 Identities=23% Similarity=0.120 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHH--HHHHHhhCC
Q 022442 64 SALKDMAVVMKQLDRSEEAIEA--IKSFRGLCS 94 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~--~~~al~~~P 94 (297)
+.++.+|..+.++|++++|+.. |+-+..++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4567778888888888888888 446655555
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.81 E-value=8.9 Score=32.20 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=93.6
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhh
Q 022442 70 AVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK 149 (297)
Q Consensus 70 g~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 149 (297)
+.-+.+.|+.++|+..|..+-+-+-.....-...-.+.+..+.|+..+|+..|..+-.-.+-... .+
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~--------~r----- 131 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI--------GR----- 131 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch--------hh-----
Confidence 44456778999999999888776654322223344578889999999999999886654321000 00
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 022442 150 FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ-MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE 227 (297)
Q Consensus 150 ~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al-~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~ 227 (297)
.-+...-++++...|-|++-..-.+-.- +-+|-... .-.||..-++.|++..|...|..+.... ..|.
T Consensus 132 ---------d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da-~apr 201 (221)
T COG4649 132 ---------DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA-QAPR 201 (221)
T ss_pred ---------HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc-cCcH
Confidence 0133456778888898887655433211 11222223 4578999999999999999999988741 1121
Q ss_pred chhhHHHHHHHHHHHH
Q 022442 228 DGRTRKRAEELLLELE 243 (297)
Q Consensus 228 ~~~~~~~a~~~l~~~~ 243 (297)
.-.++|.-++.-+.
T Consensus 202 --nirqRAq~mldlI~ 215 (221)
T COG4649 202 --NIRQRAQIMLDLID 215 (221)
T ss_pred --HHHHHHHHHHHHHh
Confidence 12345665655553
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.54 E-value=1.2 Score=38.03 Aligned_cols=55 Identities=22% Similarity=0.130 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc----HH-HhHHHHHHHHcCCHHHHH
Q 022442 157 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA----NK-ACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 157 ~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~----~~-~~nLg~~l~~~g~~~eA~ 212 (297)
+++...+.||..|. ..+.++|+..|-++|++.+.+ ++ ...|+.++.++|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46788999998887 789999999999999987644 35 668999999999999985
No 321
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.26 E-value=2.1 Score=43.30 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~ 120 (297)
..|+++-|.++|.++= ....--.+|.+.|++.+|..+-+++- .|. +...++..-+.-+.+.|+|.||.+
T Consensus 777 n~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e-~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPE-ATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred cchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--Cch-hHHHHHHHhHHhHHhhcchhhhhh
Confidence 4566666666665421 11222345666677766666544432 343 223444444555677788888777
Q ss_pred HHH------HHHHhhchhhhhcCc---chhH-HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 121 MLK------RKLRLIYQGEAFNGK---PTKT-ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 121 ~~~------~al~~~p~~~~~~~~---~~~~-~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
+|- +++..... .+. ..++ .+.|++. ..+++..+|.-|...|+..+|+..|-+|-+
T Consensus 846 lyiti~~p~~aiqmydk----~~~~ddmirlv~k~h~d~--------l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 846 LYITIGEPDKAIQMYDK----HGLDDDMIRLVEKHHGDH--------LHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred eeEEccCchHHHHHHHh----hCcchHHHHHHHHhChhh--------hhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 662 22221100 010 0011 1122221 235677788888888888888888776543
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.15 E-value=11 Score=36.21 Aligned_cols=127 Identities=15% Similarity=0.090 Sum_probs=68.6
Q ss_pred HHCCChHHHHHHHH--HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-CcchhHHhhhhhhH
Q 022442 74 KQLDRSEEAIEAIK--SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKTARSHGKKF 150 (297)
Q Consensus 74 ~~~g~~~eAi~~~~--~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~ 150 (297)
...|+++++....+ ..+..-|. ..+..++.-+.++|..+.|+.+-+.--... +-+.. |++ ...+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~----~~~~~i~~fL~~~G~~e~AL~~~~D~~~rF--eLAl~lg~L-------~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPK----DQGQSIARFLEKKGYPELALQFVTDPDHRF--ELALQLGNL-------DIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--H----HHHHHHHHHHHHTT-HHHHHHHSS-HHHHH--HHHHHCT-H-------HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCCh----hHHHHHHHHHHHCCCHHHHHhhcCChHHHh--HHHHhcCCH-------HHHH
Confidence 34678888777665 23322332 345556667789999999886432211000 00000 100 1112
Q ss_pred HHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 151 QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 151 ~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
.+.-+.+++..|..||...+.+|+++-|+.+|+++=+ +..|..+|...|+.+.=..+...+..
T Consensus 339 ~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 339 EIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 2333445677899999999999999999999998632 45666677777776555555555444
No 323
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.13 E-value=6 Score=40.18 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=46.1
Q ss_pred hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhH-----HHHHHHHcC-CHHHHHHHH
Q 022442 153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN-----LGLCLIKRT-RYNEARSVL 215 (297)
Q Consensus 153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~n-----Lg~~l~~~g-~~~eA~~~~ 215 (297)
..+-..+.++..++..+...|++++|-++|-.|++++.-|..|+. .-.-.++.| +.++|..+|
T Consensus 989 ~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 989 AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 334445678899999999999999999999999999887766543 222234445 666666665
No 324
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.85 E-value=3.3 Score=40.01 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=50.5
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 163 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~ 163 (297)
..|+.+....+.|.. ++.....-..+.+.+.+--.+|.+++... |+++++|.
T Consensus 92 ~lyr~at~rf~~D~~--lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--------------------------p~~~dLWI 143 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVK--LWLSYIAFCKKKKTYGEVKKIFAAMLAKH--------------------------PNNPDLWI 143 (568)
T ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHHhcchhHHHHHHHHHHHhC--------------------------CCCchhHH
Confidence 456666666665432 22212222244444777777777777664 34566676
Q ss_pred HHHHHHHHCCC-hHHHHHHHHHHHHhCCCcHH
Q 022442 164 NLAWAYMQKTN-FMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 164 nLg~~y~~~g~-~~eA~~~y~~Al~~~P~~~~ 194 (297)
.-+...++-+. .+.|...+.++|..+|+++.
T Consensus 144 ~aA~wefe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 144 YAAKWEFEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred hhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence 66666555554 77777788888888888775
No 325
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.85 E-value=14 Score=33.00 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=87.2
Q ss_pred HHCCChHHHHHHHHHHHhh----CCcch--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhh
Q 022442 74 KQLDRSEEAIEAIKSFRGL----CSKQS--QESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 146 (297)
Q Consensus 74 ~~~g~~~eAi~~~~~al~~----~P~~~--~~~l~~~L~~ly~~~g-~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~ 146 (297)
-.+|+++-|...+.++-.. .|+.. -..+.+..|.-....+ ++++|+..++++.++....... ...+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~-------~~~~ 76 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM-------DKLS 76 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc-------cccC
Confidence 3679999999999887543 44421 1233455677777888 9999999999999985321000 0000
Q ss_pred hhhHHHhcCCCcHHHHHHHHHHHHHCCChHH---HHHHHHHHHHhCCCcHH-H-hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 147 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMA---AEVVYQKAQMIDPDANK-A-CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 147 ~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~e---A~~~y~~Al~~~P~~~~-~-~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+...+ ...++..|+.+|.+.+.++- |..+.+.+-.-.|+.+. . ..+-.+. +.++.+++.+.+.+++..
T Consensus 77 ~~~~el-----r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~-~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 77 PDGSEL-----RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL-KSFDEEEYEEILMRMIRS 150 (278)
T ss_pred CcHHHH-----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh-ccCChhHHHHHHHHHHHh
Confidence 000000 12478889999999887754 44444455556688776 3 4444333 379999999999999986
No 326
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.79 E-value=1.8 Score=38.23 Aligned_cols=44 Identities=20% Similarity=0.058 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 178 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 178 A~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|+.+|++|+.+.|++.. ++.||.+....|+.=+|+-+|-+++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 67788888888888887 888888888888888888888888865
No 327
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.78 E-value=2 Score=45.05 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=67.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHC----C---ChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQL----D---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~----g---~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
.+..+.++.|+..|++...-.|.- -+|.+.+|+.+..+ | .+++|+..|+++-.. |..+-+-++. +.+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~ 561 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAPLEYLGK--ALV 561 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCchHHHhH--HHH
Confidence 456788999999999998888774 46889999888654 3 477777777665432 3333445565 458
Q ss_pred HHHcCCHHHHHHHHHHHHHhhc
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p 130 (297)
|.++|+++|-+++|.-|++..|
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999865
No 328
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.58 E-value=24 Score=35.35 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHH---cCCC-hHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCcc--h--HHHHHHHHHHHHHHcCCHH
Q 022442 46 EAAIVLFWKAIN---AGDR-VDSALKDMAVVMK-QLDRSEEAIEAIKSFRGLCSKQ--S--QESLDNVLIDLYKKCGKVE 116 (297)
Q Consensus 46 ~~A~~~~~~al~---~~p~-~~~a~~~Lg~~l~-~~g~~~eAi~~~~~al~~~P~~--~--~~~l~~~L~~ly~~~g~~~ 116 (297)
..|+.+++.+++ +.|. .+.+...+|.+|. ...++++|...+++++.++... . .......++.+|.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 457888887774 2222 2345777888886 7899999999999998887431 1 1223356788988888888
Q ss_pred HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH-HHHHHHCCChHHHHHHHHHHHHhC--CCcH
Q 022442 117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL-AWAYMQKTNFMAAEVVYQKAQMID--PDAN 193 (297)
Q Consensus 117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL-g~~y~~~g~~~eA~~~y~~Al~~~--P~~~ 193 (297)
|...+++.++.... .+.. .+..+..-+ ...+...+++..|+..++...... +.++
T Consensus 118 -a~~~l~~~I~~~~~--------------~~~~-------~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 118 -ALKNLDKAIEDSET--------------YGHS-------AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred -HHHHHHHHHHHHhc--------------cCch-------hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 99999999986321 0000 001112222 222233389999999999999876 4554
Q ss_pred H---HhH--HHHHHHHcCCHHHHHHHHHHHHh
Q 022442 194 K---ACN--LGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 194 ~---~~n--Lg~~l~~~g~~~eA~~~~~~al~ 220 (297)
. ... -+.+....+..++++...+++..
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 3 222 35666677878888888887754
No 329
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=8.3 Score=36.45 Aligned_cols=131 Identities=14% Similarity=0.065 Sum_probs=92.8
Q ss_pred HcCCHHHHHHHHHHHHHc----CC-----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---C-CcchHHHHHHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINA----GD-----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL---C-SKQSQESLDNVLID 107 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~----~p-----~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~---~-P~~~~~~l~~~L~~ 107 (297)
.++++.+|..+-+..+.- +- -.+-.|+.+..++-..|+...-...+...+.. . ....+..+.|.|-.
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 557888888777665541 11 13556888999999999977766665554432 2 22345667787888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
.|...+.|+.|-....++.- | ..+.| .+.++.++.+|.+-.-+++|..|.+++-.|+.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~--p-e~~sn-------------------ne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVY--P-EAASN-------------------NEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred HHhhhHHHHHHHHHhhcccC--c-ccccc-------------------HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 88888999988876655331 2 11111 13467889999999999999999999999999
Q ss_pred hCCCcH
Q 022442 188 IDPDAN 193 (297)
Q Consensus 188 ~~P~~~ 193 (297)
..|++.
T Consensus 276 kapq~~ 281 (493)
T KOG2581|consen 276 KAPQHA 281 (493)
T ss_pred hCcchh
Confidence 999764
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.43 E-value=1.4 Score=39.75 Aligned_cols=58 Identities=26% Similarity=0.205 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
.++-.+..|.+.|.+.+|+.+.++++.++|-+.. +--|-.+|..+|+--++...|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4555688899999999999999999999999988 888999999999988888877653
No 331
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.23 E-value=6.5 Score=39.67 Aligned_cols=141 Identities=13% Similarity=-0.009 Sum_probs=76.6
Q ss_pred HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHH
Q 022442 73 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV 152 (297)
Q Consensus 73 l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
+.+.|++-....+++.--.-..+...+...+..|.-+...-.+++|.++|.+.-.....-+.+. ...+ .+..-.+
T Consensus 770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly--~le~---f~~LE~l 844 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLY--RLEL---FGELEVL 844 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHH--HHHh---hhhHHHH
Confidence 3455555555554443211111112234455677777788888888888877543321101100 0000 0000001
Q ss_pred -hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH-------------------HHhCCCc-----HH-HhHHHHHHHHcC
Q 022442 153 -SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA-------------------QMIDPDA-----NK-ACNLGLCLIKRT 206 (297)
Q Consensus 153 -~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A-------------------l~~~P~~-----~~-~~nLg~~l~~~g 206 (297)
.--|++...+--+|..+...|..++|.++|-+- +++..++ .. ...-+.-++..+
T Consensus 845 a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~ 924 (1189)
T KOG2041|consen 845 ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADA 924 (1189)
T ss_pred HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhc
Confidence 112777778888999999999999998888652 2221111 11 112344556678
Q ss_pred CHHHHHHHHHHH
Q 022442 207 RYNEARSVLEDV 218 (297)
Q Consensus 207 ~~~eA~~~~~~a 218 (297)
+.-+|++.++++
T Consensus 925 ~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 925 NHMEAIEKDRKA 936 (1189)
T ss_pred chHHHHHHhhhc
Confidence 888888888887
No 332
>PF12854 PPR_1: PPR repeat
Probab=89.13 E-value=1.1 Score=26.53 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442 99 ESLDNVLIDLYKKCGKVEEQIEMLKR 124 (297)
Q Consensus 99 ~~l~~~L~~ly~~~g~~~eAi~~~~~ 124 (297)
...++.|...|.+.|++++|++++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35667788899999999999998876
No 333
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.09 E-value=9.2 Score=31.89 Aligned_cols=97 Identities=12% Similarity=-0.033 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--ch--HHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDN 103 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~--~~~l~~ 103 (297)
++...+..+..-||.+.|++.|.++...... ..+.+.++-.+....|++......+.++-.+... ++ ...+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4666677888999999999999998774333 2455677788888999999999998887654322 22 112233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
.-|..+...|+|.+|...|-.++.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 346667788999999998876554
No 334
>PF12854 PPR_1: PPR repeat
Probab=88.99 E-value=0.94 Score=26.75 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=19.3
Q ss_pred CCCcHHHhHHHHHHHHcCCHHHHHHHHHH
Q 022442 189 DPDANKACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 189 ~P~~~~~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
.||...+..|-..|.+.|+.++|..++++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45555566667777777777777776654
No 335
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.83 E-value=9.7 Score=33.38 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHH-----hCCCcHH----HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442 175 FMAAEVVYQKAQM-----IDPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 175 ~~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~-~~g~~~eA~~~~~~al~~ 221 (297)
.+.|..+|++|++ +.|.+|. .+|.+.+|. -+|+.++|+.+.++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3789999999986 5788884 457777664 489999999999988865
No 336
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.72 E-value=14 Score=35.59 Aligned_cols=129 Identities=11% Similarity=0.085 Sum_probs=75.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhC---Ccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLC---SKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~---P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
+-.-|.++.+++++.+|.++|.+..+.- |..- .+.+++.+.+.|+. ++.+. .+.-+...
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~----Me~~l~~l------------ 71 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDL----MEKQLMEL------------ 71 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHH----HHHHHHHH------------
Confidence 3345888888999999998888765432 2111 12233333344332 22222 22222110
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc-------------HH-H--hHHHHHHHHc
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-------------NK-A--CNLGLCLIKR 205 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~-------------~~-~--~nLg~~l~~~ 205 (297)
. ...|..+.+..-.|.+..+.+.|.+|++.+-.--..--+. .+ + ...+.++++.
T Consensus 72 -~---------~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~ 141 (549)
T PF07079_consen 72 -R---------QQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET 141 (549)
T ss_pred -H---------HhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc
Confidence 0 0123344555667888888999999988776554431111 11 1 2368899999
Q ss_pred CCHHHHHHHHHHHHhc
Q 022442 206 TRYNEARSVLEDVLYG 221 (297)
Q Consensus 206 g~~~eA~~~~~~al~~ 221 (297)
|++.|+..++++++..
T Consensus 142 g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 142 GRFSEGRAILNRIIER 157 (549)
T ss_pred CCcchHHHHHHHHHHH
Confidence 9999999999998864
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.64 E-value=3.1 Score=43.72 Aligned_cols=95 Identities=8% Similarity=-0.082 Sum_probs=60.9
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHH----HcCC---HHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 72 VMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYK----KCGK---VEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 72 ~l~~~g~~~eAi~~~~~al~~~P~--~~~~~l~~~L~~ly~----~~g~---~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
++..-..|++|+..|++.....|+ ...+.... +|..+. ..|+ +++|+.-|++.-.-
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 548 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFR-LGITLLEKASEQGDPRDFTQALSEFSYLHGG-------------- 548 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHH-hhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--------------
Confidence 445567899999999999999996 22222221 222222 2232 44444444432211
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
|.-|--+..-+.+|..+|+|+|-+++|.-|++..|++|.
T Consensus 549 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 549 -------------VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred -------------CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 111223556788999999999999999999999999984
No 338
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.81 E-value=1.9 Score=31.00 Aligned_cols=57 Identities=14% Similarity=0.007 Sum_probs=45.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhH---HHHHHHHcCCHHHHHHHHHHHH
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN---LGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~n---Lg~~l~~~g~~~eA~~~~~~al 219 (297)
..-|.=+.++.+..+|+..+++||+..++.+. +.. |..+|...|+|.+.+.+--+=+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567999999999999999999999886 544 5678889999999887764433
No 339
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.27 E-value=2.6 Score=37.23 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHHH
Q 022442 48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL-CSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~-~P~~~~~~l~~~L~~ly~~ 111 (297)
|+.+|.+|+.+.|.....++.||++....|+.=+|+=.|-+++.. .|. .....+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf---~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF---PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999888776643 343 1233335555554
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.90 E-value=1.9 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=22.5
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLC 93 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~ 93 (297)
.+||.+|..+|+.+.|.+.++.++.-.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 578889999999999999998888543
No 341
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.94 E-value=21 Score=33.98 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC--------CC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMID--------PD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IP---- 224 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~--------P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~--~~---- 224 (297)
.+..|-.++.-+|+|..|++...-. +++ |. +.. .+.+|.+|+.++||.+|+..|..++.-- ..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4566788999999999999987653 222 22 223 6889999999999999999999988530 01
Q ss_pred -CCc----chhhHHHHHHHHHHHHhcCCCCchhhhhcccchhHHHHHHHH
Q 022442 225 -GCE----DGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEE 269 (297)
Q Consensus 225 -~~~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 269 (297)
.+. -.+..++...+++=+....| .+..++....+.+.+.+-+..
T Consensus 203 ~~~~q~d~i~K~~eqMyaLlAic~~l~p-~~lde~i~~~lkeky~ek~~k 251 (404)
T PF10255_consen 203 QRSYQYDQINKKNEQMYALLAICLSLCP-QRLDESISSQLKEKYGEKMEK 251 (404)
T ss_pred cccchhhHHHhHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 111 13555556665655544332 224444444444555444443
No 342
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.66 E-value=23 Score=34.12 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=66.2
Q ss_pred HcCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHH--HHHHHH---------hhCCcc-hHHHHHHHHH-
Q 022442 41 VQKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE--AIKSFR---------GLCSKQ-SQESLDNVLI- 106 (297)
Q Consensus 41 ~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~--~~~~al---------~~~P~~-~~~~l~~~L~- 106 (297)
..|. -++|+.+++.+++..|.+-++....- +.--..|.+|+. .+-+++ .+.|-. ....+.|.|+
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 4454 56677777777777666554332211 111123444432 122221 122210 1123444453
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 107 -DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 107 -~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
.-+..+|+|.++.-.-.=..+ |.| .+.++.-+|.|+....+|.||-.++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--------------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~- 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--------------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQK- 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--------------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh-
Confidence 334566777766644333333 345 677899999999999999999999876
Q ss_pred HHhCCCc
Q 022442 186 QMIDPDA 192 (297)
Q Consensus 186 l~~~P~~ 192 (297)
+-|++
T Consensus 521 --LP~n~ 525 (549)
T PF07079_consen 521 --LPPNE 525 (549)
T ss_pred --CCCch
Confidence 45533
No 343
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.87 E-value=43 Score=33.17 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=107.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442 38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
..+..|+++...-+|++.+---....+.|...+..+...|+..-|-.++.++.+..-... ..+...-+.+-...|+++.
T Consensus 306 f~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~-~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 306 FEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT-PIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC-cHHHHHHHHHHHhhccHHH
Confidence 456789999999999998876677788899999999999999999988888776543321 2344444556677789999
Q ss_pred HHHHHHHHHHhhchhhhhc-----------CcchhHHhhhhhhHHH----hcCCC-cHHHHHHHHHHH-HHCCChHHHHH
Q 022442 118 QIEMLKRKLRLIYQGEAFN-----------GKPTKTARSHGKKFQV----SVRQE-TSRLLGNLAWAY-MQKTNFMAAEV 180 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~~~-----------~~~~~~~~~~~~~~~~----~l~p~-~~~~l~nLg~~y-~~~g~~~eA~~ 180 (297)
|..+|++...-.| +..-+ +.. .....+...... ..++. .+..+.+.++.. .-.++.+.|..
T Consensus 385 A~~~lq~i~~e~p-g~v~~~l~~~~~e~r~~~~-~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 385 AKVILQRIESEYP-GLVEVVLRKINWERRKGNL-EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHHhhCC-chhhhHHHHHhHHHHhcch-hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999887663 32110 100 000000000000 00011 122334444443 55689999999
Q ss_pred HHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442 181 VYQKAQMIDPDANK-ACNLGLCLIKRT 206 (297)
Q Consensus 181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g 206 (297)
.+.+++++.|++.. +..+-.+...++
T Consensus 463 ~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 463 ILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999997 766655554444
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.57 E-value=9.5 Score=27.46 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
...-|.-+..+.+.++|+..+++++..-++ +-...++ .|..+|...|+|.++++.--+=+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG-~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLG-YLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888999999999999887665 2222333 3678889999999999876665555
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.09 E-value=9.1 Score=40.74 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=84.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~ 120 (297)
.++|+.+=+.++++.-+..+ ...-=.+=.-+|||+.|+..+.++ .+....+ .-+. -.+.|-|++|+.
T Consensus 863 SqkDPkEyLP~L~el~~m~~-----~~rkF~ID~~L~ry~~AL~hLs~~---~~~~~~e-~~n~----I~kh~Ly~~aL~ 929 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMET-----LLRKFKIDDYLKRYEDALSHLSEC---GETYFPE-CKNY----IKKHGLYDEALA 929 (1265)
T ss_pred hccChHHHHHHHHHHhhchh-----hhhheeHHHHHHHHHHHHHHHHHc---CccccHH-HHHH----HHhcccchhhhh
Confidence 44566665555554322211 111222334457888888775443 3432222 2221 278888888887
Q ss_pred HHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH----------hCC
Q 022442 121 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM----------IDP 190 (297)
Q Consensus 121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~----------~~P 190 (297)
+|+--.+... ..+. ....|-. . ..-+..-|..|...|+.++|+.+|+.+.. +.+
T Consensus 930 ly~~~~e~~k--~i~~-----~ya~hL~----~-----~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~ 993 (1265)
T KOG1920|consen 930 LYKPDSEKQK--VIYE-----AYADHLR----E-----ELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSE 993 (1265)
T ss_pred eeccCHHHHH--HHHH-----HHHHHHH----H-----hccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcC
Confidence 7755443311 0000 0000000 0 01234567788888999999999887543 233
Q ss_pred CcHH----HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 191 DANK----ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 191 ~~~~----~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+-.. ...|..-+..++++-||..+....+..
T Consensus 994 ~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 994 GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 3222 257888899999999999999888874
No 346
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.85 E-value=17 Score=36.63 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=24.0
Q ss_pred HHHHHCCChHHHHHHHHHHHHhCCCcHH--HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 167 WAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~~--~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
..+.+.++|++|.+.-++ .|...+ ++-.|..+.+..+|+||...|-+
T Consensus 781 qlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred hheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHH
Confidence 344556666766655443 344432 34445555555555555554443
No 347
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.84 E-value=65 Score=34.42 Aligned_cols=158 Identities=17% Similarity=0.187 Sum_probs=91.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 115 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~ 115 (297)
..+++..+=+++|...|.+ ...+..| +-++.-..+..+.|.+.-+++ +-. .++.-++....+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkk----f~~n~~A---~~VLie~i~~ldRA~efAe~~---n~p----~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKK----FDMNVSA---IQVLIENIGSLDRAYEFAERC---NEP----AVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHH----hcccHHH---HHHHHHHhhhHHHHHHHHHhh---CCh----HHHHHHHHHHHhcCch
Confidence 3455566667888888865 2333333 233445567777777765443 221 3445578888999999
Q ss_pred HHHHHHHHHHHHhhchhhhhc--------CcchhHHhhhhhhHHHh-cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 116 EEQIEMLKRKLRLIYQGEAFN--------GKPTKTARSHGKKFQVS-VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~~~~--------~~~~~~~~~~~~~~~~~-l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
.+||+.|-+|= .++.... +....+ -+.+++. -+-.-+.+-..|-.+|.+.++..|-++.
T Consensus 1121 ~dAieSyikad---Dps~y~eVi~~a~~~~~~edL----v~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~f----- 1188 (1666)
T KOG0985|consen 1121 KDAIESYIKAD---DPSNYLEVIDVASRTGKYEDL----VKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEF----- 1188 (1666)
T ss_pred HHHHHHHHhcC---CcHHHHHHHHHHHhcCcHHHH----HHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHH-----
Confidence 99999886632 2211110 110000 0001110 0001122334455677777777776553
Q ss_pred HhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 187 MIDPDANKACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 187 ~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
-..|+.+.....|.-+...|.|+.|.-+|..+-
T Consensus 1189 i~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS 1221 (1666)
T KOG0985|consen 1189 IAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS 1221 (1666)
T ss_pred hcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh
Confidence 246777778888998899999999988876543
No 348
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.81 E-value=25 Score=29.60 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=91.7
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-chH-HHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV--DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQ-ESLDNVL 105 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~~~-~~l~~~L 105 (297)
.+|..+..+. .++..++|+..|...-+.+-.. .-+.+..|.++.+-|+.++|+..|..+-...|- ..- .....--
T Consensus 60 d~flaAL~lA-~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKLA-QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHHH-HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 3444444444 5788899999887655533222 235677899999999999999999988766552 111 1122224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
+.++...|.|++-..-.+.. .- ++ + |=-..+.-.||.+-.+.|++..|...|...
T Consensus 139 a~lLvD~gsy~dV~srvepL-a~--d~-----n-----------------~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPL-AG--DG-----N-----------------PMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHhccccHHHHHHHhhhc-cC--CC-----C-----------------hhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 56778889888766533221 10 00 0 111235567999999999999999999998
Q ss_pred HHhCCCcHH-HhHHHHH
Q 022442 186 QMIDPDANK-ACNLGLC 201 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~ 201 (297)
.. +.+.+. ..+.+.+
T Consensus 194 a~-Da~aprnirqRAq~ 209 (221)
T COG4649 194 AN-DAQAPRNIRQRAQI 209 (221)
T ss_pred Hc-cccCcHHHHHHHHH
Confidence 76 433333 4444443
No 349
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=83.73 E-value=4.8 Score=39.31 Aligned_cols=90 Identities=18% Similarity=0.019 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442 77 DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI---EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 153 (297)
Q Consensus 77 g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi---~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (297)
+....||..|.+++...|.. ..-+.+ -+.++.+.+=...+. .-...++++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~-~~~l~n-raa~lmkRkW~~d~~~AlrDch~Alrl------------------------- 440 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDA-IYLLEN-RAAALMKRKWRGDSYLALRDCHVALRL------------------------- 440 (758)
T ss_pred HHHHHHHHHHHHHhhhccch-hHHHHh-HHHHHHhhhccccHHHHHHhHHhhccC-------------------------
Confidence 34557778888888877762 222223 334444433222222 222233333
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
+|-.-.+++.|+.++.+++++.+|+.+...+....|.+..
T Consensus 441 -n~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 441 -NPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred -ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 3344468899999999999999999999888888886665
No 350
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=83.67 E-value=30 Score=30.48 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHH-----hCCCcHH----HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442 175 FMAAEVVYQKAQM-----IDPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 175 ~~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~-~~g~~~eA~~~~~~al~~ 221 (297)
.+.|..+|+.|++ +.|.+|. .+|.+.+|. -+++.++|..+-++++..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5689999999986 4588884 356666655 469999999888887764
No 351
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.13 E-value=39 Score=38.85 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHH---c----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442 45 PEAAIVLFWKAIN---A----GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 45 ~~~A~~~~~~al~---~----~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
..+-+-.+++++- . +....+.|...|.+-...|+++.|-.++-.+-+..+. .++...+.++-.+|+...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~----~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP----EIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc----hHHHHHHHHHHhhccHHH
Confidence 4445555555543 2 3446789999999999999999999998888777654 355557788899999999
Q ss_pred HHHHHHHHHHhhchhhh--hcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHhCCCcH
Q 022442 118 QIEMLKRKLRLIYQGEA--FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF--MAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~--~eA~~~y~~Al~~~P~~~ 193 (297)
|+..+++.+..+-++.. ++..+.. +.. . -...+..-++....+.|++ ..-+..|+.|.++.|...
T Consensus 1721 Al~~Lq~~l~~~~~~~~~~~~~~p~~------~n~--~---i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNFPDLHTPYTDTPQS------VNL--L---IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred HHHHHHHHHHhhcccccCCccccchh------hhh--h---hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence 99999999987532211 0000000 000 0 0123455566666666664 456788999999999777
Q ss_pred H-HhHHHHHHHH------------cCCHHH---HHHHHHHHHhc
Q 022442 194 K-ACNLGLCLIK------------RTRYNE---ARSVLEDVLYG 221 (297)
Q Consensus 194 ~-~~nLg~~l~~------------~g~~~e---A~~~~~~al~~ 221 (297)
. ++.||..|.+ .|++.. ++..|.+++..
T Consensus 1790 ~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~y 1833 (2382)
T KOG0890|consen 1790 DKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYY 1833 (2382)
T ss_pred CceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHh
Confidence 6 7777755433 366666 55555666654
No 352
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.62 E-value=36 Score=31.61 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML 122 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~ 122 (297)
..|+++-.++||..||++.++.+.+-.|-..-.+++-+|...+....-|.+...++
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888899999999988888777774222233334444445555454444443
No 353
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.51 E-value=23 Score=35.34 Aligned_cols=49 Identities=22% Similarity=0.084 Sum_probs=31.3
Q ss_pred HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 73 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 73 l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
..+.||++.|.++. .+.+. +.-+..||++....|++..|.+++.++-.+
T Consensus 647 al~lgrl~iA~~la---~e~~s----~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLA---VEANS----EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHH---Hhhcc----hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34556666665542 22222 123344788888889999999998887665
No 354
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.30 E-value=37 Score=30.46 Aligned_cols=124 Identities=13% Similarity=0.063 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH-HHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE-EQIE 120 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g-~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~-eAi~ 120 (297)
.....|+++.+.+|.++|.+-..|+.--.++..++ +..+-++.+...+.-+|++.+...+. -.+....|++. .-++
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR--r~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR--RVIVELLGDPSFRELE 134 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH--HHHHHHhcCcccchHH
Confidence 34455666666666666665555555554444333 34444555555555556543321111 11223344444 3344
Q ss_pred HHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 121 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
..++++.. +..+-.++...-|++..-+.|+.-+.+-.+.|+.+--|..
T Consensus 135 f~~~~l~~--------------------------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 135 FTKLMLDD--------------------------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHHHhc--------------------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 44444432 1124456666667777777777777777777766665554
No 355
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.02 E-value=3.4 Score=25.28 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
.+..||.+-...++|++|+.-|+++|++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45568888899999999999999999873
No 356
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.69 E-value=16 Score=29.23 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCC---ChHHHHHHHHHHHh-hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 63 DSALKDMAVVMKQLD---RSEEAIEAIKSFRG-LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g---~~~eAi~~~~~al~-~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
.+..++++-++.... +..+.|.+++..++ -.|..-.+-++ .|+.-+.+.|+|++++.+.+..|+..|
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~ly-YLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLY-YLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhh-hhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 345666666665543 34455666666664 33432222222 255556667777777777777666654
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.63 E-value=8.9 Score=33.36 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
.+..+...+|+...+.-++.+|.+...-+.+-.+|.-.|++++|..-++-+-.+.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4578899999999999999999999999999999999999999999999999998874
No 358
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.12 E-value=41 Score=30.19 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=90.8
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442 20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE 99 (297)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~ 99 (297)
.-+.-+|+++.+.--.+.++ ..++.++..+|+..+..+. +...|+.+.+.++.++|.+. +
T Consensus 19 ~Dv~PlpqdDg~npvv~I~Y--te~fr~~m~YfRAI~~~~E-----------------~S~RAl~LT~d~i~lNpAnY-T 78 (318)
T KOG0530|consen 19 SDVTPLPQDDGPNPVVKIAY--TEDFRDVMDYFRAIIAKNE-----------------KSPRALQLTEDAIRLNPANY-T 78 (318)
T ss_pred ccCccCCCCCCCCcceEeee--chhHHHHHHHHHHHHhccc-----------------cCHHHHHHHHHHHHhCcccc-h
Confidence 33444454444332222222 3466777777766555443 34456666677777777632 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH-HH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM-AA 178 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~-eA 178 (297)
.+.+-.-.+-.-..+..+-++.+.+.++-+| .+-.++...-.+....|++. .-
T Consensus 79 VW~yRr~iL~~l~~dL~~El~~l~eI~e~np--------------------------KNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 79 VWQYRRVILRHLMSDLNKELEYLDEIIEDNP--------------------------KNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc--------------------------cchhHHHHHHHHHHHhcCcccch
Confidence 2322111111222346666777777666543 23346666666777777776 67
Q ss_pred HHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 179 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 179 ~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++..++++..+..|-. |...-.++..-+.++.-+.+..+.++.
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777776665 777777777777777777777777754
No 359
>PF13041 PPR_2: PPR repeat family
Probab=81.08 E-value=4.2 Score=25.85 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
..++.+...|.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45677888999999999999999998875
No 360
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.01 E-value=42 Score=34.21 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHH----------------------HhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSF----------------------RGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~a----------------------l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~ 120 (297)
..|+.++|..+..+-.+++|.+.|... ...-|++. .+.-.+|+.+...|-.++|.+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s--~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDS--ELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCccc--chHHHHHHHHHhhchHHHHHH
Confidence 467888999888888899988877521 22234422 344457888889999999998
Q ss_pred HHHHHHHhhchhhhhc-CcchhHHhhhhhhHHHhcC---CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 121 MLKRKLRLIYQGEAFN-GKPTKTARSHGKKFQVSVR---QETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 121 ~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~~l~---p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
+|-+ ...+.++.. ... ....++...++-. |+--..+..-+.-+.+.++..+|++.+|+|
T Consensus 874 a~Lr---~s~pkaAv~tCv~---LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 874 AYLR---RSLPKAAVHTCVE---LNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHh---ccCcHHHHHHHHH---HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 8855 222222211 000 0001111111000 111122333455567788999999999988
No 361
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.00 E-value=17 Score=35.30 Aligned_cols=86 Identities=10% Similarity=0.006 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
.-..+|+.|+...+.+...|.+-.....+.+-+.+--.+|.+++..+|+++.. |....-..|.-.-+++.|-+++.++|
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dL-WI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDL-WIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchh-HHhhhhhHHhhccchHHHHHHHHHHh
Confidence 35678888888888888888887777777777888889999999999986542 22222344444445899999999999
Q ss_pred Hhhchhh
Q 022442 127 RLIYQGE 133 (297)
Q Consensus 127 ~~~p~~~ 133 (297)
+.+|...
T Consensus 168 R~npdsp 174 (568)
T KOG2396|consen 168 RFNPDSP 174 (568)
T ss_pred hcCCCCh
Confidence 9887543
No 362
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.72 E-value=3.4 Score=29.42 Aligned_cols=35 Identities=26% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh-------CCCcHH
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI-------DPDANK 194 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-------~P~~~~ 194 (297)
..+...+.-+...|++.+|+.+|+++++. .||++.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 34667788889999999999998887763 566653
No 363
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.67 E-value=4 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442 173 TNFMAAEVVYQKAQMIDPDANK-ACNLGLC 201 (297)
Q Consensus 173 g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~ 201 (297)
|+++.|..+|++++...|.++. |...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 5678889999999999998887 7765543
No 364
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.41 E-value=14 Score=36.99 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=68.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC 112 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~ 112 (297)
.+.-+++..++++|...+..-|. .+....+|..+|..+.+.|.|.++++.+-+.+|...-.... ...+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~--~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL--MLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH--HHHHHHHh
Confidence 34568899999999999986554 45567789999999999999999999999999874322222 22344677
Q ss_pred CCHHHHHHHHHHHHHhh
Q 022442 113 GKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 113 g~~~eAi~~~~~al~~~ 129 (297)
|.-++|+.+........
T Consensus 442 ~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSSE 458 (872)
T ss_pred cchHHHHHHHHHHHhhh
Confidence 99999999888876653
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.85 E-value=9.7 Score=34.51 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=49.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
+.-.+..|...|.+.+|+.+.++++.++|-+ +..+..|..+|...|+--+|+..|++.-+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~--e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLS--EQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 4446778899999999999999999999963 234444667889999999999998886655
No 366
>PF13041 PPR_2: PPR repeat family
Probab=78.57 E-value=9.5 Score=24.15 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCcHH
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI--DPDANK 194 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~--~P~~~~ 194 (297)
+++.+=..|.+.|++++|.++|++..+. .||...
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYT 40 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 4555666666666666666666666653 344443
No 367
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=78.55 E-value=9.2 Score=37.42 Aligned_cols=86 Identities=12% Similarity=-0.028 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH---HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK---SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~---~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
+....|+..|.+++..-|.....+-+-+.++.+.+=...+..+++ .++.++|. ....+.-|+..+...+++.+|+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s--~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS--IQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH--HHHHHHHHHHHHHHHhhHHHhh
Confidence 446678999999999999999999999999988865556665555 56777775 2344555888999999999999
Q ss_pred HHHHHHHHhhc
Q 022442 120 EMLKRKLRLIY 130 (297)
Q Consensus 120 ~~~~~al~~~p 130 (297)
++...+....|
T Consensus 466 ~~~~alq~~~P 476 (758)
T KOG1310|consen 466 SCHWALQMSFP 476 (758)
T ss_pred hhHHHHhhcCc
Confidence 98776555545
No 368
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.23 E-value=4 Score=22.56 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
++.+...|.+.|++++|.++|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34567788899999999999888654
No 369
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=77.31 E-value=18 Score=38.89 Aligned_cols=136 Identities=21% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHHHHHHHHCCChHHHHH------HHHH-HHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442 66 LKDMAVVMKQLDRSEEAIE------AIKS-FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 138 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~------~~~~-al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 138 (297)
....|......|.+.+|-+ .+.. .-.+.|. ....+..|+.++-+.|++++|+..-+++.-+...
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~--~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR------- 1005 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE--VASKYRSLAKLSNRLGDNQEAIAQQRKACIISER------- 1005 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh--HHHHHHHHHHHHhhhcchHHHHHhcccceeeech-------
Confidence 3456777778888888877 3332 2334454 2245566889999999999999988877665320
Q ss_pred chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcH---H-HhHHHHHHHHcCCHH
Q 022442 139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDAN---K-ACNLGLCLIKRTRYN 209 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~---~-~~nLg~~l~~~g~~~ 209 (297)
-...++ |+....+.||+......+....|...+.+++.+ .|++| . ..|++.++...++++
T Consensus 1006 --~~g~ds---------~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1006 --VLGKDS---------PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred --hccCCC---------HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence 000111 233446788998889999999999999999875 35454 3 578999999999999
Q ss_pred HHHHHHHHHHhc
Q 022442 210 EARSVLEDVLYG 221 (297)
Q Consensus 210 eA~~~~~~al~~ 221 (297)
-|+.+.+.|+..
T Consensus 1075 ~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1075 TALRYLESALAK 1086 (1236)
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 370
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.82 E-value=4.9 Score=27.71 Aligned_cols=28 Identities=21% Similarity=0.061 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
.+.+.|.-+.+.|++++|+.+|+++++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567788888899999999999888764
No 371
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.66 E-value=6.6 Score=37.27 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=46.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHH-------HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 68 DMAVVMKQLDRSEEAIEAIKSF-------RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 68 ~Lg~~l~~~g~~~eAi~~~~~a-------l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
.|..++.-+|+|..|++.++-. ...-|. ++.++.+..|-.|..++||.+|+.+|...|--.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~-~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPA-CHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcc-hheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888999999999987642 222232 345666778999999999999999999988753
No 372
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=76.28 E-value=8.4 Score=38.61 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
++++...|..+.+..+|+||.+.|.+|=
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 3477888888888889999888887763
No 373
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=76.27 E-value=35 Score=26.64 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=47.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~ 120 (297)
..+.+...+.+++..+..++.++..+..+..+|.+.+ ..+.++.++. .++. .++.. .+.++.+.|.+++++-
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~--yd~~~-~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSNH--YDIEK-VGKLCEKAKLYEEAVE 90 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----cccc--CCHHH-HHHHHHHcCcHHHHHH
Confidence 4567888888998888887777777777788887653 4455555442 1110 11222 2344567777777777
Q ss_pred HHHH
Q 022442 121 MLKR 124 (297)
Q Consensus 121 ~~~~ 124 (297)
+|.+
T Consensus 91 l~~k 94 (140)
T smart00299 91 LYKK 94 (140)
T ss_pred HHHh
Confidence 7766
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.20 E-value=11 Score=31.53 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442 48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P 94 (297)
.+++.++.++..|+ +..+.+++.++..+|+.++|....+++..+.|
T Consensus 130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444444444443 33455555555555555555555555555555
No 375
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.07 E-value=61 Score=29.33 Aligned_cols=125 Identities=16% Similarity=0.196 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHHHhhCCcc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhc
Q 022442 77 DRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV 154 (297)
Q Consensus 77 g~~~eAi~~~~~al~~~P~~--~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 154 (297)
...++|+..|++++++.|.. |-.....-...+++++|++++....|++.|..+.....-| +..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN---------ySE------ 105 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN---------YSE------ 105 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc---------ccH------
Confidence 48899999999999999862 2222223346788999999999999999988643111101 000
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCcHH-H----hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--DPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 155 ~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~--~P~~~~-~----~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
...+++-..-....+.+--...|+..|+. +..|.. | ..||.+|...|.|-.-..+++++-..
T Consensus 106 -----KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 106 -----KSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred -----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 01111111111122222223344433331 223333 4 46899999999998888888776654
No 376
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=76.07 E-value=6.8 Score=22.00 Aligned_cols=27 Identities=44% Similarity=0.562 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
++.+...|.+.|++++|.++|++..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 345667789999999999999986653
No 377
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.53 E-value=13 Score=35.48 Aligned_cols=86 Identities=10% Similarity=0.097 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-C---hH-------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHH
Q 022442 33 VRAKHAQLVQKDPEAAIVLFWKAINAGD-R---VD-------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101 (297)
Q Consensus 33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p-~---~~-------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l 101 (297)
++.+.+....|++..|++++.+...+.. . .. ..-..|..+|..+++.+-|+....+.+-++|....+.+
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHL 266 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHL 266 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHH
Confidence 3334444455566666666665443322 1 11 12345889999999999999999999999997433333
Q ss_pred HHHHHHHHHHcCCHHHHHH
Q 022442 102 DNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~ 120 (297)
. -+.+.+.+.||.+|..
T Consensus 267 r--qAavfR~LeRy~eAar 283 (569)
T PF15015_consen 267 R--QAAVFRRLERYSEAAR 283 (569)
T ss_pred H--HHHHHHHHHHHHHHHH
Confidence 3 3566777788888743
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.27 E-value=8.5 Score=21.25 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHH
Q 022442 44 DPEAAIVLFWKAINAGDRVDSALKDM 69 (297)
Q Consensus 44 ~~~~A~~~~~~al~~~p~~~~a~~~L 69 (297)
+.+.|...|++++...|..+..|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 44555555555555555555554443
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.26 E-value=1e+02 Score=30.98 Aligned_cols=166 Identities=15% Similarity=0.074 Sum_probs=104.6
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcC--CChHH----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCc---chHHHHH
Q 022442 33 VRAKHAQL-VQKDPEAAIVLFWKAINAG--DRVDS----ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK---QSQESLD 102 (297)
Q Consensus 33 ~~~~~~~~-~~g~~~~A~~~~~~al~~~--p~~~~----a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~---~~~~~l~ 102 (297)
.+++.+++ ...+++.|...+.|++.+. ++..+ +.+.++.++.+.+... |...+++.+...-. ..+....
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 33344444 5678999999999998865 44433 3456788999999888 99999998876543 2232333
Q ss_pred HHH-HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442 103 NVL-IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 181 (297)
Q Consensus 103 ~~L-~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~ 181 (297)
..+ ..++...+++..|++.++....... ..++... ..-+...-|.++...+..+++++.
T Consensus 142 rll~~~l~~~~~d~~~Al~~L~~~~~~a~--------------~~~d~~~------~v~~~l~~~~l~l~~~~~~d~~~~ 201 (608)
T PF10345_consen 142 RLLKIQLALQHKDYNAALENLQSIAQLAN--------------QRGDPAV------FVLASLSEALLHLRRGSPDDVLEL 201 (608)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhh--------------hcCCHHH------HHHHHHHHHHHHhcCCCchhHHHH
Confidence 333 4455455899999999999888631 0011000 001334457777888989999999
Q ss_pred HHHHHHh------CCCc----HH-HhHH--HHHHHHcCCHHHHHHHHHHHH
Q 022442 182 YQKAQMI------DPDA----NK-ACNL--GLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 182 y~~Al~~------~P~~----~~-~~nL--g~~l~~~g~~~eA~~~~~~al 219 (297)
.+++... +|+. .. +.-+ -.+++..|+++.+...++++-
T Consensus 202 l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 202 LQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9888542 2221 12 2222 235667788777777765543
No 380
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.70 E-value=7.6 Score=27.66 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=16.5
Q ss_pred HHHHCCChHHHHHHHHHHHHh
Q 022442 168 AYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 168 ~y~~~g~~~eA~~~y~~Al~~ 188 (297)
--...|+|++|+.+|..|++.
T Consensus 15 ~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 15 DEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhHhhhHHHHHHHHHHHHHH
Confidence 345678899999999998874
No 381
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.63 E-value=42 Score=33.56 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=64.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
....||++.|...+.. -| .+....++..+-.+|-.++|++ +.++..+ - . .+..+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~----I~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~d~--r-F---elal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPT----IP--KEIRTKVAHFLESQGMKEQALE-------LSTDPDQ--R-F---ELALKLGRLDIA 656 (794)
T ss_pred Hhhhcccccccccccc----Cc--hhhhhhHHhHhhhccchHhhhh-------cCCChhh--h-h---hhhhhcCcHHHH
Confidence 3456666666553321 12 2345567777777777766654 4554211 1 1 223678888888
Q ss_pred HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
.++..++ ++..-|..||.+-...|++..|.+|+.+|-++
T Consensus 657 ~~la~e~-------------------------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 657 FDLAVEA-------------------------------NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHhh-------------------------------cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 8754442 22345788999999999999999999998764
No 382
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.55 E-value=24 Score=40.40 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=71.7
Q ss_pred HHHHHHHHCCChHHHHHHHHHHH-hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhh
Q 022442 68 DMAVVMKQLDRSEEAIEAIKSFR-GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 146 (297)
Q Consensus 68 ~Lg~~l~~~g~~~eAi~~~~~al-~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~ 146 (297)
.+|.+-...|.|.+|+-.+++.. .-.+....+.++..+-.+|...+++|.-..++..-... |
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-~---------------- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-P---------------- 1450 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-c----------------
Confidence 46667777777777777777741 11112334445555555777777777666555431111 1
Q ss_pred hhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 147 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 147 ~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
-+.+.=..+...|++..|..||++++..+|+... ...+-......|.++..+...+-..
T Consensus 1451 --------------sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1451 --------------SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred --------------cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 1223333456778999999999999999988775 4444445555566666655544443
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.10 E-value=11 Score=30.41 Aligned_cols=40 Identities=25% Similarity=0.124 Sum_probs=20.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL 76 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~ 76 (297)
.-.+.+|++.-|..+...++..+|++.++....+.+|.++
T Consensus 78 ~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 78 QAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3344566666666666666666666665555555555443
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.78 E-value=16 Score=30.52 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~ 191 (297)
++.++.+++.++..+|+.++|....+++..+.|.
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3456777777777777777777777777777773
No 385
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.45 E-value=9.5 Score=27.21 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
-+...|.-+.+.|+|++|+.+|+.+++.
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556777888899999999999998874
No 386
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.20 E-value=49 Score=29.00 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHhhCCc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442 78 RSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 153 (297)
Q Consensus 78 ~~~eAi~~~~~al~~~P~----~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (297)
.....|++++++...... -....+...+|.-|...|++++|+..|+.+....- ..+-...
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr--------------~egW~~l-- 216 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR--------------REGWWSL-- 216 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------------hCCcHHH--
Confidence 344556666666554331 11234556689999999999999999999865421 1110000
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
...++..|-.|+..+|+.++.+.+--+.
T Consensus 217 ----~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 217 ----LTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred ----HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1347788899999999998887765544
No 387
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.80 E-value=1.1e+02 Score=30.07 Aligned_cols=194 Identities=15% Similarity=0.062 Sum_probs=113.3
Q ss_pred hcCCCCCc-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHH----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch
Q 022442 23 HKVPAGDG-PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDS----ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 97 (297)
Q Consensus 23 ~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~ 97 (297)
+..|++.. .++.++.+.. .|+.+.|+..+...+. +...+ .++.+|.++.-+-+|.+|...+..+.+... |
T Consensus 261 ~~~p~ga~wll~~ar~l~~-~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd--W 335 (546)
T KOG3783|consen 261 KRYPKGALWLLMEARILSI-KGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD--W 335 (546)
T ss_pred HhCCCCccHHHHHHHHHHH-cccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh--h
Confidence 33465555 4555666665 5558889999988877 44333 355788899999999999999888776643 2
Q ss_pred HHHHH-HHHHHHHHH--------cCCHHHHHHHHHHHHHhh---chh---hh--------hc-Ccc---hhHHhh--hh-
Q 022442 98 QESLD-NVLIDLYKK--------CGKVEEQIEMLKRKLRLI---YQG---EA--------FN-GKP---TKTARS--HG- 147 (297)
Q Consensus 98 ~~~l~-~~L~~ly~~--------~g~~~eAi~~~~~al~~~---p~~---~~--------~~-~~~---~~~~~~--~~- 147 (297)
....+ +..|-+|.+ .|+-++|-...+.+-++. |.. +. |. ... ...... +.
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El 415 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL 415 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence 22222 222233322 234455444444333321 100 00 00 000 000000 00
Q ss_pred ---------------hhHH-----Hhc-CCCcHHH-HHHHHHHHHHCCChHHHHHHHHHHHHh---CCCc---H-H-HhH
Q 022442 148 ---------------KKFQ-----VSV-RQETSRL-LGNLAWAYMQKTNFMAAEVVYQKAQMI---DPDA---N-K-ACN 197 (297)
Q Consensus 148 ---------------~~~~-----~~l-~p~~~~~-l~nLg~~y~~~g~~~eA~~~y~~Al~~---~P~~---~-~-~~n 197 (297)
.++. -.+ ++|+.-. ..-+|.++..+|+...|..+|+.+++. .-.+ . . .+.
T Consensus 416 ~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YE 495 (546)
T KOG3783|consen 416 AYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYE 495 (546)
T ss_pred HHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 0000 122 2222222 344799999999999999999999943 2222 2 2 688
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhc
Q 022442 198 LGLCLIKRTR-YNEARSVLEDVLYG 221 (297)
Q Consensus 198 Lg~~l~~~g~-~~eA~~~~~~al~~ 221 (297)
||.+++++|. ..++..++.+|...
T Consensus 496 lA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 496 LALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHhcccChHHHHHHHHHHHhh
Confidence 9999999998 99999999999985
No 388
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.28 E-value=39 Score=32.93 Aligned_cols=120 Identities=8% Similarity=-0.041 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcC
Q 022442 76 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 155 (297)
Q Consensus 76 ~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (297)
.|+.-.|-.-...++...|.++. +..+.+.+....|.|+.|.+.+.-+=++.-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s------------------------ 355 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGT------------------------ 355 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcC------------------------
Confidence 46777777777777887886542 3333567888899999988766554333110
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH-HHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL-GLCLIKRTRYNEARSVLEDVLYGRI 223 (297)
Q Consensus 156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL-g~~l~~~g~~~eA~~~~~~al~~~~ 223 (297)
...+..-+-.-...+|++++|...-.-.|.-.-.+++...+ +..-..+|-++++.-.+++++..++
T Consensus 356 --~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 356 --TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred --CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 01233334445677899999999888888776666663322 3344567888999999999998754
No 389
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=70.09 E-value=16 Score=28.69 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=59.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCc-----H----------H-HhHHHHHHHHcCCHHHHHHHHHH----HHhc
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-----N----------K-ACNLGLCLIKRTRYNEARSVLED----VLYG 221 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~-----~----------~-~~nLg~~l~~~g~~~eA~~~~~~----al~~ 221 (297)
+..+|..-++.+++-.++-+|++|+.+.-+- . . -.||+.++..+|+.+=.+.+++- ++..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999763221 0 1 25899999999999999998864 4444
Q ss_pred CCCCCc-c----hhhHHHHHHHHHHHHhcCCCCchh
Q 022442 222 RIPGCE-D----GRTRKRAEELLLELESKQPPPDLS 252 (297)
Q Consensus 222 ~~~~~~-~----~~~~~~a~~~l~~~~~~~~~~~~~ 252 (297)
.|.-+. + -.++.-....|-+..+..|+|...
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F~KRHPNP~iA 119 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDFMKRHPNPEIA 119 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 222111 0 122333444444555556665544
No 390
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=69.82 E-value=7.8 Score=21.29 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=13.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
++.+=.+|.+.|++++|...|++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555555555555555543
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.43 E-value=46 Score=29.10 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=42.2
Q ss_pred HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
-+.+.+...+|+...+.-++-+|.+.. ..-|-.+|.-.|++++|..-++-+-..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 456667788888888888888888887 777777888888888888877776665
No 392
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=69.27 E-value=12 Score=26.54 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=16.7
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHh
Q 022442 165 LAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 165 Lg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
-|.-....|++++|+.+|..+++.
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 344456677888888888887764
No 393
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=68.11 E-value=11 Score=26.86 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
-+...|.-+...|+|++|+.+|.++++.
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3556677888889999999988888764
No 394
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=67.36 E-value=1.4e+02 Score=29.75 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC--CHHHHHHHH
Q 022442 45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG--KVEEQIEML 122 (297)
Q Consensus 45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g--~~~eAi~~~ 122 (297)
+..|.++.+.++.-+|.. ++..-|+.+||+..+++...-.+. .....+-+.++...+ .-.-=..+|
T Consensus 300 yk~a~KYLR~al~s~p~v---------lLl~~~~l~eal~~~e~~c~~~~~---~lpi~~~~~lle~~d~~~~~~l~~~~ 367 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV---------LLLIGGRLKEALNELEKFCISSTC---ALPIRLRAHLLEYFDQNNSSVLSSCL 367 (547)
T ss_pred HHHHHHHHHHHhcCCCCe---------EEeccccHHHHHHHHHHhccCCCc---cchHHHHHHHHHHhCcccHHHHHHHH
Confidence 345677777777777775 666778999998887764433332 111222344555555 455556677
Q ss_pred HHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH---HHhCCCcHHHhHHH
Q 022442 123 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA---QMIDPDANKACNLG 199 (297)
Q Consensus 123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A---l~~~P~~~~~~nLg 199 (297)
+..+++.|. ....+.-+...+.. ...+....+-. +++.|..+.|..+.
T Consensus 368 e~~~~~~P~--------------------------~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~iwle~~ 418 (547)
T PF14929_consen 368 EDCLKKDPT--------------------------MSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHPIWLEFV 418 (547)
T ss_pred HHHhcCCCc--------------------------HHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 777776551 11122222222222 44445544422 34457777788888
Q ss_pred HHHHH-cCCHHHHHHHHHHHH
Q 022442 200 LCLIK-RTRYNEARSVLEDVL 219 (297)
Q Consensus 200 ~~l~~-~g~~~eA~~~~~~al 219 (297)
.++.+ .++++.-.+....++
T Consensus 419 ~~~l~~~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 419 SCFLKNPSRFEDKEEDHKSAL 439 (547)
T ss_pred HHHHhccccccccHHHHHHHH
Confidence 88888 666664445555554
No 395
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.98 E-value=11 Score=27.05 Aligned_cols=26 Identities=15% Similarity=-0.143 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
..+.|..+.+.|..++|+.+|++++.
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 45566666666777777776666654
No 396
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.91 E-value=10 Score=27.06 Aligned_cols=23 Identities=35% Similarity=0.174 Sum_probs=14.2
Q ss_pred HHHHHHCCChHHHHHHHHHHHhh
Q 022442 70 AVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 70 g~~l~~~g~~~eAi~~~~~al~~ 92 (297)
|+-+-+.|++++|+..|..++..
T Consensus 13 Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33344667777777777766543
No 397
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.49 E-value=1.1e+02 Score=28.45 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH--H-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--K-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~--~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
+...|+.|-.++|+..||++.++...+-.|-.. . .-||-.++.++.-|.+-..++-+
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999999999999888877433 2 45777777777666655555444
No 398
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=65.96 E-value=17 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
++.+...+.+.|+++.|..+++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567788899999999998888655
No 399
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.55 E-value=9.9 Score=27.06 Aligned_cols=17 Identities=35% Similarity=0.274 Sum_probs=10.2
Q ss_pred CCChHHHHHHHHHHHhh
Q 022442 76 LDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 76 ~g~~~eAi~~~~~al~~ 92 (297)
.|++++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 36666666666665543
No 400
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.46 E-value=35 Score=29.96 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
+...+|.-|...|+|++|+.+|+.+....-... . ...|..|....|+.+..+.+.=+++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 556899999999999999999999966533221 2 4567888899999888887765544
No 401
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.88 E-value=39 Score=27.19 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHH-HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 163 GNLAW-AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 163 ~nLg~-~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..++. ++..+|+-+.=.+.++....-+.-++. ...+|.+|.+.|+..+|-++++++-+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34443 457788888888888888775555666 889999999999999999999998874
No 402
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=61.42 E-value=1.3e+02 Score=27.42 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----ch--hhhhc
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI----YQ--GEAFN 136 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~----p~--~~~~~ 136 (297)
++....+-..+ .++++.+.++.+++.+..+|- +.+.+.+...++.+.| ++++.+.++..+... |. .-.|+
T Consensus 100 ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pf--WLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~ 175 (301)
T TIGR03362 100 ADRVADYQELL-AQADWAALLQRVEQSLSLAPF--WLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFS 175 (301)
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCch--hhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccC
Confidence 34444444444 667789999999999988885 5567777788889999 677777777766652 21 11121
Q ss_pred -Ccc-----h-hHHhhhhhh------HHHhcCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH----HhH
Q 022442 137 -GKP-----T-KTARSHGKK------FQVSVRQ--ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK----ACN 197 (297)
Q Consensus 137 -~~~-----~-~~~~~~~~~------~~~~l~p--~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~----~~n 197 (297)
|.. + .....+... ......+ ........-+..+...|..++|+..++..+.-.++.-. .+.
T Consensus 176 DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~ 255 (301)
T TIGR03362 176 DGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLL 255 (301)
T ss_pred CCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHH
Confidence 110 0 000000000 0000000 01112233467788899999999999987664444332 346
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 198 LGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 198 Lg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++.++...|+++-|...|+.+...
T Consensus 256 ~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 256 LARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 799999999999999999998864
No 403
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=61.29 E-value=20 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=20.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+..-|.-+.+.|++++|+.+|.++++.
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677778888888888888887763
No 404
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.12 E-value=47 Score=29.05 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=13.0
Q ss_pred CCChHHHHHHHHHHHHhCCCcH
Q 022442 172 KTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 172 ~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
.++...|+.++++|+.++|...
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCCC
Confidence 3455566666666666666543
No 405
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.31 E-value=31 Score=27.71 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHH
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYN 209 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~ 209 (297)
+.....+......|++.-|.++...++..+|+|.. ..-.+.+|..+|.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45667788889999999999999999999999998 666788887776443
No 406
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=60.00 E-value=20 Score=20.42 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHC----CChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQK----TNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~----g~~~eA~~~y~~Al~~ 188 (297)
+.++||.+|..- .+..+|+.+|++|-+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 567777777542 3778888888887654
No 407
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.11 E-value=2e+02 Score=28.74 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=81.6
Q ss_pred cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442 58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~ 137 (297)
+++..-..|..-...-...|++....-.|++++--+... .+.|.. .+..+...|+.+-|-.++.++.++.-
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-~efWik-y~~~m~~~~~~~~~~~~~~~~~~i~~------- 362 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-DEFWIK-YARWMESSGDVSLANNVLARACKIHV------- 362 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-HHHHHH-HHHHHHHcCchhHHHHHHHhhhhhcC-------
Confidence 444445556666666778899999999999988766542 222332 34555677999999999999998742
Q ss_pred cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHH
Q 022442 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~ 212 (297)
|..+.++..-+..-...|+++.|..+|++...--|+... -..-......+|..+.+-
T Consensus 363 ------------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 363 ------------------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred ------------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 122334444455556666777777777766665566654 333344455555555555
No 408
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=59.08 E-value=1.9e+02 Score=28.69 Aligned_cols=70 Identities=9% Similarity=-0.085 Sum_probs=42.3
Q ss_pred hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442 21 VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG 91 (297)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~ 91 (297)
.+...|.+-.++..+.+-+. .+-.++....|++-+...|..+.+|..-........+|+.-..+|.+++.
T Consensus 12 rie~nP~di~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHhcCCccHHHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444544445544444443 33666666777776666677666666666666666666666666666554
No 409
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.94 E-value=1.3e+02 Score=28.88 Aligned_cols=126 Identities=14% Similarity=0.040 Sum_probs=65.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH--HhcCCCcHHHHHHHHHHHH--HCCChHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYM--QKTNFMAAEVV 181 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~l~p~~~~~l~nLg~~y~--~~g~~~eA~~~ 181 (297)
|.-+...|++.+|+..|+..|...|--..-+. ....... +.| ---+-+|.... +..-.+....-
T Consensus 211 gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~-------~E~~e~~eli~i-----crEYilgl~iEl~Rr~l~~~~~~~ 278 (422)
T PF06957_consen 211 GYKLFTAGKFEEAIEIFRSILHSIPLLVVESR-------EEEDEAKELIEI-----CREYILGLSIELERRELPKDPVED 278 (422)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHC--BSSC-------HHHHHHHHHHHH-----HHHHHHHHHHHHHHCTS-TTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhheeeecCH-------HHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccccchhh
Confidence 56667899999999999999988652110000 0000000 000 00123443332 11111122222
Q ss_pred HHHHH---------HhCCCcHH-HhHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCC
Q 022442 182 YQKAQ---------MIDPDANK-ACNLGL-CLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQP 247 (297)
Q Consensus 182 y~~Al---------~~~P~~~~-~~nLg~-~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 247 (297)
-+|.+ .+.|.+.. .+..|+ ..++.++|.-|....+++|+. .+ .....++|..++..++....
T Consensus 279 ~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel---~p-~~~~a~qArKil~~~e~~~t 351 (422)
T PF06957_consen 279 QKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLEL---NP-SPEVAEQARKILQACERNPT 351 (422)
T ss_dssp HHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT------SCHHHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHc---CC-CHHHHHHHHHHHHHHhcCCC
Confidence 23333 34555554 344444 335789999999999999997 33 34566789999999876443
No 410
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=58.83 E-value=25 Score=20.50 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHH--HHHHHCC-----ChHHHHHHHHHHHHh
Q 022442 160 RLLGNLA--WAYMQKT-----NFMAAEVVYQKAQMI 188 (297)
Q Consensus 160 ~~l~nLg--~~y~~~g-----~~~eA~~~y~~Al~~ 188 (297)
.+.++|| .+|..-. ++++|+.+|++|-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4567777 5444432 468888888887654
No 411
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=58.29 E-value=97 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 74 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 74 ~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
..+|+-++=-+.+....+-+.. ...+..-++.+|.+.|...+|-+++++|-+
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEI--NPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4445555544455444421111 112333456666666666666666666654
No 412
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.28 E-value=1.1e+02 Score=28.38 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 76 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 76 ~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
.+..-+|+.+++.++...|.+.+ +...|..+|...|-...|...|.. |.+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~--~~LlLvrlY~~LG~~~~A~~~~~~-L~i 245 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQ--LKLLLVRLYSLLGAGSLALEHYES-LDI 245 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHh-cCh
Confidence 34567888899999999997543 555578999999999999999966 444
No 413
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.81 E-value=19 Score=25.61 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=9.8
Q ss_pred HHHCCChHHHHHHHHHHH
Q 022442 73 MKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 73 l~~~g~~~eAi~~~~~al 90 (297)
+-+.|++++|+..|..++
T Consensus 16 ~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 16 LDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 334566666666555443
No 414
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=57.51 E-value=32 Score=26.91 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
..+|..+..+|++++|+.+|-.++..+|.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 34888888899999999999999999886
No 415
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=57.28 E-value=66 Score=29.89 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHH
Q 022442 45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI-EMLK 123 (297)
Q Consensus 45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi-~~~~ 123 (297)
.-+|+.+++.++..+|.+......|-.+|..+|-...|...|..+--.+=. ..+++..+..-+...|.+..+. ..+.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ--~DTL~h~~~~r~~~~~~~~~~~~~~~~ 276 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQ--LDTLGHLILDRLSTLGPFKSAPENLLE 276 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHH--HHHhHHHHHHHHhccCcccccchHHHH
Confidence 446999999999999999999999999999999999999999753111111 1134433334445566666666 6666
Q ss_pred HHHHh
Q 022442 124 RKLRL 128 (297)
Q Consensus 124 ~al~~ 128 (297)
.++..
T Consensus 277 ~~~~f 281 (365)
T PF09797_consen 277 NALKF 281 (365)
T ss_pred HHHHH
Confidence 65554
No 416
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.07 E-value=38 Score=31.13 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN-LGLCLIKRTRYNEARSVLEDVLYGRIPGC 226 (297)
Q Consensus 156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~n-Lg~~l~~~g~~~eA~~~~~~al~~~~~~~ 226 (297)
|+++..|.....--...|-|.+--..|-+++..+|.|.+ |.- -+.-+...++++.+..++.+.+..++..|
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 456667766666556677888888899999999999998 764 56667788899999999999998744333
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.90 E-value=1.4e+02 Score=26.19 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=56.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChH------------HHHHHHHHHHHHCCChHHH--HHHHHHHHh--hCCcchHHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVD------------SALKDMAVVMKQLDRSEEA--IEAIKSFRG--LCSKQSQESLD 102 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~------------~a~~~Lg~~l~~~g~~~eA--i~~~~~al~--~~P~~~~~~l~ 102 (297)
.+..|+++.|+.+.+.||+.+-..| +-...-+..-...|+.-+. ...+..+.. --|+.....++
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3467999999999999999653322 2223334444555553221 111222211 12443444667
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHHhhc
Q 022442 103 NVLIDLYK---------KCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 103 ~~L~~ly~---------~~g~~~eAi~~~~~al~~~p 130 (297)
..+|..+. ..++...|+.++++|+.++|
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 77787763 45688999999999999976
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.35 E-value=1.2e+02 Score=25.61 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCC
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR 207 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~ 207 (297)
...-.++.+.|.+++|++.+++... +|++.. ...|..+-.+...
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc
Confidence 3456678899999999999999888 888776 6666655444433
No 419
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=56.06 E-value=18 Score=33.17 Aligned_cols=79 Identities=9% Similarity=-0.051 Sum_probs=59.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhch
Q 022442 52 FWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ 131 (297)
Q Consensus 52 ~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~ 131 (297)
|.++....|+++..|..-+.-..+.|-+.+--..|-++++.+|.+... |......-|...++++.+-..+.++|+.+|.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdl-WI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDL-WIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee-eeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 344555567788888877777777888888888899999999975432 2233455567889999999999999998763
No 420
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=55.53 E-value=17 Score=33.33 Aligned_cols=33 Identities=27% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
++.-|....+.|..-+|+..|+.|+++-||-..
T Consensus 22 l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs 54 (366)
T KOG2997|consen 22 LYEKAVLKEQDGSLYDAINFYRDALQIVPDIES 54 (366)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHH
Confidence 333444456778899999999999999998775
No 421
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=54.12 E-value=26 Score=24.62 Aligned_cols=27 Identities=26% Similarity=0.113 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+..-|.-....|++++|+.+|.++++.
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666777888888888888888763
No 422
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.07 E-value=2.4e+02 Score=28.24 Aligned_cols=160 Identities=14% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHc------------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH-----hhCCcchHHHHHHHHHH
Q 022442 45 PEAAIVLFWKAINA------------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR-----GLCSKQSQESLDNVLID 107 (297)
Q Consensus 45 ~~~A~~~~~~al~~------------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al-----~~~P~~~~~~l~~~L~~ 107 (297)
+++|..-|.-|+.. .|-+.+.+..++.+...+|+.+-|.+++++++ .+.|.........-|-.
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH------HhcCCC-cHHHHHHHHHHH-HHCCChHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ------VSVRQE-TSRLLGNLAWAY-MQKTNFMAAE 179 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~------~~l~p~-~~~~l~nLg~~y-~~~g~~~eA~ 179 (297)
++.....+=.|+--|-+-++. +...++.. +.++|. +|-+...+-.+| .+..+|.==|
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~---------------RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI 398 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQ---------------RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWII 398 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHh---------------cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHH-----HHhCCCcHHHhHHHHHHHHcCC---HHHHHHHHHHHH
Q 022442 180 VVYQKA-----QMIDPDANKACNLGLCLIKRTR---YNEARSVLEDVL 219 (297)
Q Consensus 180 ~~y~~A-----l~~~P~~~~~~nLg~~l~~~g~---~~eA~~~~~~al 219 (297)
..++.. +..-|+..--..|+.+|..... .+.|...+.+|+
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
No 423
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=53.39 E-value=55 Score=30.41 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=59.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHHHcCCHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
.+.|+..-..+|.......|+- -.-.|-++++....=.+.++...+.+... |. +.....+..-|+++.+.|+.+||-
T Consensus 308 edtDW~~I~aLYdaL~~~apSP-vV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr 385 (415)
T COG4941 308 EDTDWPAIDALYDALEQAAPSP-VVTLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEAR 385 (415)
T ss_pred CCCChHHHHHHHHHHHHhCCCC-eEeehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHH
Confidence 3456777777776655555552 23345667776666677777777665543 21 112234455688899999999999
Q ss_pred HHHHHHHHhhc
Q 022442 120 EMLKRKLRLIY 130 (297)
Q Consensus 120 ~~~~~al~~~p 130 (297)
..|++++.+.+
T Consensus 386 ~aydrAi~La~ 396 (415)
T COG4941 386 AAYDRAIALAR 396 (415)
T ss_pred HHHHHHHHhcC
Confidence 99999999854
No 424
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.65 E-value=30 Score=24.62 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=5.5
Q ss_pred HCCChHHHHHHHH
Q 022442 75 QLDRSEEAIEAIK 87 (297)
Q Consensus 75 ~~g~~~eAi~~~~ 87 (297)
+.|++.+|+..|+
T Consensus 18 ~~gr~~eAi~~Y~ 30 (75)
T cd02682 18 KEGNAEDAITNYK 30 (75)
T ss_pred hcCCHHHHHHHHH
Confidence 4444444444333
No 425
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=52.50 E-value=34 Score=23.84 Aligned_cols=27 Identities=22% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+..-|.-....|++++|+.+|..+++.
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566677778888888888887763
No 426
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=51.47 E-value=2.1e+02 Score=26.77 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=61.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH----cCCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHh-----hCCcchHHHHHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAIN----AGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRG-----LCSKQSQESLDNV 104 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~----~~p~--~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~-----~~P~~~~~~l~~~ 104 (297)
..++...+++.+|+.+....++ +++. ..+.+..-..+|+...+..+|.+.+-.+.. .+|..-+..+...
T Consensus 135 i~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLq 214 (411)
T KOG1463|consen 135 IRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQ 214 (411)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHh
Confidence 3445677888888887776664 3332 234444556777777788888877766543 3554333344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
-|.++....+|.-|-.+|-+|++-.
T Consensus 215 SGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 215 SGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred ccceeecccccchHHHHHHHHHccc
Confidence 4667777788999998888888763
No 427
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.77 E-value=91 Score=22.37 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=28.3
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCcchhhHHHHHHHHHHHH
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLYG-------RIPGCEDGRTRKRAEELLLELE 243 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~~-------~~~~~~~~~~~~~a~~~l~~~~ 243 (297)
.+.|..+-+.|+.++|+.+|++++.. +.+.......+++|..+-..+.
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~ 66 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMK 66 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHH
Confidence 34445556668888888888877753 1111223445666777666664
No 428
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=50.05 E-value=1.3e+02 Score=23.84 Aligned_cols=80 Identities=15% Similarity=-0.007 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
.++|+.-.+.+++-.+|-+|++|+.+...-..-+. .+..+...+ ..-.-.||+..|..+|+.+=.++++
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~------~el~dll~i-----~VisCHNLA~FWR~~gd~~yELkYL 73 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNE------IELEDLLTI-----SVISCHNLADFWRSQGDSDYELKYL 73 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhccccc------ccHHHHHHH-----HHHHHhhHHHHHHHcCChHHHHHHH
Confidence 45778888999999999999999998532100000 000011101 1124578999999999999999998
Q ss_pred HH----HHHhCCCcH
Q 022442 183 QK----AQMIDPDAN 193 (297)
Q Consensus 183 ~~----Al~~~P~~~ 193 (297)
+- ++.+-|+.+
T Consensus 74 qlASE~VltLiPQCp 88 (140)
T PF10952_consen 74 QLASEKVLTLIPQCP 88 (140)
T ss_pred HHHHHHHHHhccCCC
Confidence 75 456778766
No 429
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.73 E-value=2.2e+02 Score=26.03 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=17.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
+.+..++.+.|.|.+|+.....++.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567777777777777777766654
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.59 E-value=2.5e+02 Score=26.44 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=36.5
Q ss_pred HHHcCCHHHHHHHHHHHHHc-CCChH-HHHHHHHHHHH--HCCChHHHHHHHHHHHhh
Q 022442 39 QLVQKDPEAAIVLFWKAINA-GDRVD-SALKDMAVVMK--QLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~-~p~~~-~a~~~Lg~~l~--~~g~~~eAi~~~~~al~~ 92 (297)
.+..+++..|..++...... .++.. ..+..+...|. ...++.+|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45788999999999888774 44432 34555544444 455788888888876654
No 431
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.87 E-value=38 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+...|.-....|+|++|+.+|+.+++.
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555566667777777777777663
No 432
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=46.08 E-value=87 Score=23.59 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=19.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P 94 (297)
..-|.+-...|++..|.+...++.+..+
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~ 90 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSD 90 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3456666777888888887777765544
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.53 E-value=1.7e+02 Score=27.94 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
.++..+|.-|..-|+++.|+..|-++...|-..-+ .+...++..+-...|+|..-.....+|..- |.+ .. .+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~--~~----~~ 223 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PDA--NE----NL 223 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chh--hh----hH
Confidence 46778899999999999999999998888875211 122222333444567887777777666553 211 00 00
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
.. ++ .+.+.---|.+...+++|..|.++|-.+--
T Consensus 224 ~q--------~v---~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 224 AQ--------EV---PAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HH--------hc---CcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 00 00 122344567777788899999999987754
No 434
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=45.26 E-value=7 Score=38.61 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHH--hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFR--GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 124 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al--~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~ 124 (297)
+..-+..+.+.|++..|..++...- .+.|.. ...+....+.+...+|++++|+..+..
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q-~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ-QARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCChHH-HHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 3334556666666666666665544 233321 122333345566666666666666653
No 435
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.20 E-value=42 Score=25.45 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
+--|..+..||.+|...|+.+.|...|+.--.+.|..
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 3345678889999999999999999999888889973
No 436
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=43.97 E-value=69 Score=25.44 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 202 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l 202 (297)
+.+..+=..++..-+.+.|..+|...++..|++.. +..|-..+
T Consensus 77 EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 77 EALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 45555666677777789999999999999999987 66555544
No 437
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.11 E-value=62 Score=25.27 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
..+|..+...|++++|..+|-+|+..-|+-..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 56888888889999999999999988887654
No 438
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=43.04 E-value=3.5e+02 Score=26.90 Aligned_cols=170 Identities=16% Similarity=0.113 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
-...++.+.+....+ ..++..++.+|.+. ..++=-.+.++.++.+=++ ...+..|+..|.+ ++-..++..|.+++
T Consensus 84 ~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD--vv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 84 IVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFND--VVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh--HHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 345566677766543 45788899999988 6677778888888887763 3566778888766 99999999999999
Q ss_pred Hhhchh---hhhcCcchhHHhhhhh---hH-------HHhcCCCcHHHH-HHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442 127 RLIYQG---EAFNGKPTKTARSHGK---KF-------QVSVRQETSRLL-GNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 127 ~~~p~~---~~~~~~~~~~~~~~~~---~~-------~~~l~p~~~~~l-~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~ 192 (297)
...-+. ++......++....++ .+ +-.+......++ -.+-.-|....+++||+......|+.+..+
T Consensus 159 yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 159 YRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred HHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchh
Confidence 864221 1110000000000000 00 001111111222 223344667899999999999999998877
Q ss_pred HH-HhHHHHHHHH--------------------cCCHHHHHHHHHHHHhc
Q 022442 193 NK-ACNLGLCLIK--------------------RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 193 ~~-~~nLg~~l~~--------------------~g~~~eA~~~~~~al~~ 221 (297)
.. .-++-..+.. -.++.+++.-|++.+..
T Consensus 239 ~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f 288 (711)
T COG1747 239 VWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHF 288 (711)
T ss_pred hhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhee
Confidence 65 5555554444 34677777777776644
No 439
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=40.50 E-value=57 Score=30.85 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Q 022442 46 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR 78 (297)
Q Consensus 46 ~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~ 78 (297)
..|+.++++|.. ...|+.|.++|.+++.+|+
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 345555555544 3444556666666655553
No 440
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=40.24 E-value=71 Score=21.76 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=8.4
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 022442 111 KCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~ 128 (297)
+.|++++|+.+|.+++..
T Consensus 17 ~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 344444444444444443
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.03 E-value=2.1e+02 Score=30.23 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCcHH-HhHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 022442 180 VVYQKAQMIDPDANK-ACNL-GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPP 248 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nL-g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 248 (297)
+.|=.-..+.|-+.. .... -.+..+++++..|....++.++.. + .+...+++..++.+.+..+.+
T Consensus 1070 AaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~---~-~~~~A~q~rki~~a~eknp~D 1136 (1202)
T KOG0292|consen 1070 AAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELA---P-SPPVAEQARKIKQAAEKNPTD 1136 (1202)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---C-CChHHHHHHHHHHHhhcCccc
Confidence 334444456777665 4433 346789999999999999999972 2 233455678888877764433
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.59 E-value=2.7e+02 Score=24.61 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHH----------------HhCCCcHH-Hh-HHHHHHHHcCCHHHHHHHHHHHH
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQ----------------MIDPDANK-AC-NLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al----------------~~~P~~~~-~~-nLg~~l~~~g~~~eA~~~~~~al 219 (297)
++..|..+|..|.+.|++.+|..+|-..- ...|...+ +. ..-.-|...|+...|...+..-+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67889999999999999999998885421 12344444 22 23334556677777776655444
No 443
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.43 E-value=1.2e+02 Score=30.22 Aligned_cols=62 Identities=19% Similarity=0.095 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHH--CCChHHHHHHHHHHHHhC----CC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 158 TSRLLGNLAWAYMQ--KTNFMAAEVVYQKAQMID----PD-ANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 158 ~~~~l~nLg~~y~~--~g~~~eA~~~y~~Al~~~----P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.|-++.|||.+-.- ...-..++.+|.+|+... -+ +.- +.-+|..|.+.+++.+|+..+-.+-
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 34455666655432 233455677777777532 22 222 5668999999999999999997654
No 444
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.31 E-value=65 Score=28.15 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH--HhHHHHHH
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCL 202 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~--~~nLg~~l 202 (297)
+..++.+..+.|||++.+.+.++++..+|+-.. ..-|+.+|
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999999887653 44456555
No 445
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.20 E-value=4.3e+02 Score=26.87 Aligned_cols=163 Identities=9% Similarity=0.017 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442 45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 124 (297)
Q Consensus 45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~ 124 (297)
..+|..++..+.....+ .+.+.....+-...++++.+...+..+-..... ...+.+=+|..+...|+.++|...|++
T Consensus 295 ~~~a~~w~~~~~~~~~~-~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~--~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQS-TSLLERRVRMALGTGDRRGLNTWLARLPMEAKE--KDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhcccccCC-cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc--CHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66788888765543211 122222222333778887777666653211111 223445567777788999999999988
Q ss_pred HHHhhchhhhhcCcchhHHhhhhhhHHHhc--CCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhH
Q 022442 125 KLRLIYQGEAFNGKPTKTARSHGKKFQVSV--RQET-----SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN 197 (297)
Q Consensus 125 al~~~p~~~~~~~~~~~~~~~~~~~~~~~l--~p~~-----~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~n 197 (297)
+... . .|.|.+.. ...+..+.+.. .|.. .......+..+.+.|+..+|...+..++.. .+......
T Consensus 372 ~a~~-~---~fYG~LAa--~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~ 444 (644)
T PRK11619 372 LMQQ-R---GFYPMVAA--QRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQ 444 (644)
T ss_pred HhcC-C---CcHHHHHH--HHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHH
Confidence 7442 1 11110000 00000000000 0000 012345677788899999999999888875 44334777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 022442 198 LGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 198 Lg~~l~~~g~~~eA~~~~~~ 217 (297)
++.+-...|.++-++....+
T Consensus 445 la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 445 LARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHCCCHHHHHHHHhh
Confidence 77777888888888766644
No 446
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=39.20 E-value=3.8e+02 Score=26.23 Aligned_cols=205 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 51 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 51 ~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
.+.+++.--|-.++.|+.-..-+...++-+.|+...++....+|. +...++..|...++-++--.+|++.+.--.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Q ss_pred ---------------------------------------hhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH
Q 022442 131 ---------------------------------------QGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ 171 (297)
Q Consensus 131 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~ 171 (297)
-+....-...+.++..-.+...+--..+.-...+-=.-|..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Q ss_pred CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 022442 172 KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPD 250 (297)
Q Consensus 172 ~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 250 (297)
+|++.-|-.+|+--+..-||.+. ....-..++..|+-+.|..+|++++.. .....-..-++...+.....+.
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~------ 517 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS------ 517 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc------
Q ss_pred hhhhhcccchhHHHHHHHH
Q 022442 251 LSDLLGLNLEDEFVNGLEE 269 (297)
Q Consensus 251 ~~~~~~~~~~d~~~~~~~~ 269 (297)
.+-+..+..+|.+.+++
T Consensus 518 --lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 518 --LNNVYSLEERFRELVPQ 534 (660)
T ss_pred --hHHHHhHHHHHHHHcCc
No 447
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.64 E-value=1.2e+02 Score=31.28 Aligned_cols=91 Identities=16% Similarity=0.032 Sum_probs=62.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC--CChHHHHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--TNFMAAEVVYQKA 185 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~--g~~~eA~~~y~~A 185 (297)
.+++.+++.+|.--|..++.+.|.+. ++.+....+.+.+|+++ |+|..++.--.-|
T Consensus 62 ~~~~K~d~~~~~~~~~~~~~llp~~~----------------------~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la 119 (748)
T KOG4151|consen 62 KLFQKRDYEGAMFRYDCAIKLLPKDH----------------------HVVATLRSNQASCYMQLGLGEYPKAIPECELA 119 (748)
T ss_pred HHhhhhhhhccchhhhhhheeccccc----------------------hhhhhHHHHHHHHHhhcCccchhhhcCchhhh
Confidence 34666777777777777777655211 11233556777777664 6888888888888
Q ss_pred HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
+...|.... ...-+.+|...++++-|..-..-...
T Consensus 120 ~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~ 155 (748)
T KOG4151|consen 120 LESQPRISKALLKRARKYEALNKLDLAVRDLRIVEK 155 (748)
T ss_pred hhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 888888887 66778888888887777777444333
No 448
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.31 E-value=82 Score=18.48 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHhHHH
Q 022442 174 NFMAAEVVYQKAQMIDPDANKACNLG 199 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~~~~nLg 199 (297)
.++.|-.+|++.+...|+-..|+..|
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45677777888777777755565544
No 449
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=37.88 E-value=87 Score=25.39 Aligned_cols=28 Identities=4% Similarity=0.004 Sum_probs=24.2
Q ss_pred HHHHHHHHCC-ChHHHHHHHHHHHhhCCc
Q 022442 68 DMAVVMKQLD-RSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 68 ~Lg~~l~~~g-~~~eAi~~~~~al~~~P~ 95 (297)
.+|..+...| +.++|+.+|-.++..+|.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 4888888888 889999998888888886
No 450
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.68 E-value=3.4e+02 Score=25.22 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFR-GLCSK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al-~~~P~----~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~ 137 (297)
...-..||.+|-+-+++..|...+...- ..+|. +....+..-++.+|.+.++..+|..+..++--+.-
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a------- 175 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA------- 175 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh-------
Confidence 3456679999999999999988765321 11222 11123345578999999999999998888654311
Q ss_pred cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
...+..+++ ....--+.++...++|=||-..|-+....
T Consensus 176 ------~~~Ne~Lqi-------e~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 176 ------ESSNEQLQI-------EYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred ------cccCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 12233577778888888888887776543
No 451
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=37.07 E-value=1.9e+02 Score=27.85 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHCCChHHHHHHHHHH--HhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442 44 DPEAAIVLFWKAINAGDR----VDSALKDMAVVMKQLDRSEEAIEAIKSF--RGLCSKQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 44 ~~~~A~~~~~~al~~~p~----~~~a~~~Lg~~l~~~g~~~eAi~~~~~a--l~~~P~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
+.+.+...+-+ ++..|+ .+...+.+-..|...|..++++..++.= ..+.|++ ..+++|-+.+.+.|+|..
T Consensus 81 ~~d~~~~~L~k-~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~---~s~n~Lmd~fl~~~~~~~ 156 (429)
T PF10037_consen 81 DLDEVEDVLYK-FRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN---FSFNLLMDHFLKKGNYKS 156 (429)
T ss_pred HHHHHHHHHHH-HHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh---hhHHHHHHHHhhcccHHH
Confidence 45556665554 333333 2344566778899999999999998753 4467763 456668888999999999
Q ss_pred HHHHHHHHHHh
Q 022442 118 QIEMLKRKLRL 128 (297)
Q Consensus 118 Ai~~~~~al~~ 128 (297)
|..+.-..+..
T Consensus 157 A~~V~~~~~lQ 167 (429)
T PF10037_consen 157 AAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHHHHh
Confidence 99988876665
No 452
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.87 E-value=2.9e+02 Score=28.95 Aligned_cols=139 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred cccccchhhhhhhhhcCCCCCcH--------HHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC------------------
Q 022442 9 KIFSSKKEDLFHVIHKVPAGDGP--------YVRAKHAQLVQKDPEAAIVLFWKAIN-AGDR------------------ 61 (297)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~------------------ 61 (297)
|+.+--++..|.+..++-..... ....|-....+|++++|..+|-+.|. ++|.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~Y 419 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSY 419 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHH
Q ss_pred ----------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhch
Q 022442 62 ----------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ 131 (297)
Q Consensus 62 ----------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~ 131 (297)
+.+--..|-.+|.++++.+. +...+...+...+..=.-....++++.+-+++|.-+-.+.-.-
T Consensus 420 Le~L~~~gla~~dhttlLLncYiKlkd~~k----L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~h--- 492 (933)
T KOG2114|consen 420 LEALHKKGLANSDHTTLLLNCYIKLKDVEK----LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKH--- 492 (933)
T ss_pred HHHHHHcccccchhHHHHHHHHHHhcchHH----HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccC---
Q ss_pred hhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 132 GEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
-.-|-.++..+|+|++|+.++..
T Consensus 493 ------------------------------e~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 493 ------------------------------EWVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred ------------------------------HHHHHHHHHHhcCHHHHHHHHhc
No 453
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=35.68 E-value=4.2e+02 Score=26.40 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..++..++.||.+. ..+.=...+++.++.+=++.. --.|+..|.+ ++.+.+...|.+++..
T Consensus 99 kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 99 KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 34677788888877 556677778888888777776 5567776655 8888888888887764
No 454
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.12 E-value=3.8e+02 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.036 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Q 022442 45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR 78 (297)
Q Consensus 45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~ 78 (297)
-++|+.+-+-.+.+-|..++++-.++.++.+-.|
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR 245 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESR 245 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 4678888888888999999998888887766443
No 455
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=34.40 E-value=49 Score=26.91 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhcCCCCchhhhhcccchhHHHHHHHHHHhhcC
Q 022442 231 TRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWA 275 (297)
Q Consensus 231 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~ 275 (297)
.-.-|.++...+....||+.+.+.+....-|.|...|...|++|.
T Consensus 33 a~~iA~D~v~qL~~~ypPA~Tt~~l~q~~~D~Fg~aL~~aLR~~G 77 (151)
T PRK13883 33 QQKLATDAVQQLATLYPPAQTRFELQQPTPDAFGQALVKALRDKG 77 (151)
T ss_pred HHHHHHHHHHHHHHhCCCcceEEEEecCCCcHHHHHHHHHHHHcC
Confidence 334688888899888899999888877777999999999999886
No 456
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.29 E-value=1.1e+02 Score=20.65 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=17.1
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 195 ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 195 ~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
....-.-|...|++++|.++..++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455667777777777777777665
No 457
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.73 E-value=4e+02 Score=24.81 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
.....|+.+|.+.++|..|...+.- .|..- | .+ ..+.+ . .......+|.+|.+.++..+|+
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~----I~~~t---g--~~-~~d~~--~-------kl~l~iriarlyLe~~d~veae 164 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVG----IPLDT---G--QK-AYDVE--Q-------KLLLCIRIARLYLEDDDKVEAE 164 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc----cCccc---c--hh-hhhhH--H-------HHHHHHHHHHHHHhcCcHHHHH
Confidence 4456789999999999999876532 22110 0 00 00000 0 0125678999999999999999
Q ss_pred HHHHHHHHh--CCCcHH-HhH----HHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 180 VVYQKAQMI--DPDANK-ACN----LGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 180 ~~y~~Al~~--~P~~~~-~~n----Lg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+-.++--+ +..|.. ... -+.++-..++|-||...|-++...
T Consensus 165 ~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 165 AYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887533 334443 222 366667778998888877766653
No 458
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=33.68 E-value=61 Score=22.56 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~ 129 (297)
-+-..|++++|+.+|.++++..
T Consensus 17 ~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 17 KADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 3456799999999999999873
No 459
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.41 E-value=3.8e+02 Score=24.58 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------hHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 33 VRAKHAQLVQKDPEAAIVLFWKAINAGDR--------VDSALKDMAVVMKQLDRSEEAIEAIKS 88 (297)
Q Consensus 33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~Lg~~l~~~g~~~eAi~~~~~ 88 (297)
.....-+...++.++|+..|.+.+.-+-. ...+..+++.+|...|++..=-+.+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 34455667889999999999998875222 345678899999999998766555443
No 460
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=33.23 E-value=1.2e+02 Score=19.07 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHH
Q 022442 180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA 211 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA 211 (297)
..|.+|+--+|++.. +...+..+...|+...|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 357788888998887 88889999999988654
No 461
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=33.10 E-value=2.7e+02 Score=22.62 Aligned_cols=91 Identities=21% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc-------CCC--------------------------------hHHHHHHHHHHHHHC
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINA-------GDR--------------------------------VDSALKDMAVVMKQL 76 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~-------~p~--------------------------------~~~a~~~Lg~~l~~~ 76 (297)
.+..+..|+.++|...+.+|... +|. ........+.-..+.
T Consensus 9 Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l~~ 88 (155)
T PF10938_consen 9 ARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELLKK 88 (155)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHHhC
Confidence 45567889999999999988762 111 123456678899999
Q ss_pred CChHHHHHHHHHHH-------hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 77 DRSEEAIEAIKSFR-------GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 77 g~~~eAi~~~~~al-------~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
|+...|.+.++-+- ..-|-. ...-....+.-+...|++.+|-..+..++.
T Consensus 89 g~~~~A~~~L~~~~~ei~~~~~~lPL~-~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 89 GDKQAAREILKLAGSEIDITTALLPLA-QTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp T-HHHHHHHHHHTT-EEEEEEEEEEHH-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcccceeeeeeCCHH-hhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999987641 122321 111222245667899999999999999875
No 462
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=32.65 E-value=53 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhcCCCCchhhhhcccchhHHHHHHHHHHhhcCccc
Q 022442 231 TRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSR 278 (297)
Q Consensus 231 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~yr 278 (297)
.-.-|.++...+....+|+.....+-... |.|...|+..|+.|. |-
T Consensus 39 a~~iA~D~vsqLae~~pPa~tt~~l~q~~-d~Fg~aL~~aLr~~G-Ya 84 (145)
T PRK13835 39 ASAIAGDMVSRLAEQIGPGTTTIKLKKDT-SPFGQALEAALKGWG-YA 84 (145)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEeecC-cHHHHHHHHHHHhcC-eE
Confidence 33568888999988899998888888877 999999999999996 54
No 463
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=31.91 E-value=71 Score=29.79 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
..+++-.|..+..+.++++|++.++.+....|++..
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 345555555555555555555555555555555554
No 464
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=31.85 E-value=65 Score=30.50 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH
Q 022442 175 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY 208 (297)
Q Consensus 175 ~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~ 208 (297)
...|+.++++|.. -+.|. |.++|.+++.+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 3567777777765 56776 99999999888753
No 465
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.76 E-value=50 Score=31.48 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+..++|.+|.+++++++|+.+|+++|.+
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999974
No 466
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=31.13 E-value=61 Score=25.32 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhcccchhHHHHHHHHHHhhcCccc
Q 022442 233 KRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSR 278 (297)
Q Consensus 233 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~yr 278 (297)
.-|.++...+....||+.+.+.+....-|.|...|.+.|++|. |-
T Consensus 7 ~iA~D~v~qL~~~ypPA~Tt~~L~q~~~d~Fg~aL~~~LR~~G-Ya 51 (121)
T PF07283_consen 7 AIAGDMVSQLAEQYPPAKTTFELKQKDPDPFGQALENALRAKG-YA 51 (121)
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEcCCCChHHHHHHHHHHhcC-cE
Confidence 3577888888888999999888866667999999999999885 53
No 467
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.83 E-value=4e+02 Score=26.75 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK 87 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~ 87 (297)
+..+.|-.+|++.+..+|+ +....-+.-+...|-..+|...++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 56 NETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 4556666666666666666 345555666666666666666555
No 468
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=30.62 E-value=4.2e+02 Score=24.13 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=39.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK 87 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~ 87 (297)
.++++.+.++..++.+..+|=.-+.++..+.++.++| ++++..+++
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~ 156 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIR 156 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 6778899999999999999999999999999999999 566666554
No 469
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=30.56 E-value=4.2e+02 Score=24.12 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCC------h---HHH---HHHHH-HHHHHCCChHHHHHHHHHHHhhCCcchHHH
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAIN-AGDR------V---DSA---LKDMA-VVMKQLDRSEEAIEAIKSFRGLCSKQSQES 100 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~-~~p~------~---~~a---~~~Lg-~~l~~~g~~~eAi~~~~~al~~~P~~~~~~ 100 (297)
+.-......||..|+.-++++++ +.++ . .+. +--+| .++..+||+.+++...-+-... |......
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-pEklPpk 119 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-PEKLPPK 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-cccCCHH
Confidence 34456678899999999999987 2111 1 121 22233 3677889999998865443322 3221123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH-HHHHHHHHHHHHCCChHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS-RLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~-~~l~nLg~~y~~~g~~~eA~ 179 (297)
+.-+..-+|.+.|.+....++-..-|.- |.+... |++. -+=..|-.++.=+|.++||+
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~l--------------------p~y~~vaELyLl~VLlPLG~~~eAe 178 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSL--------------------PEYGTVAELYLLHVLLPLGHFSEAE 178 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCc--------------------hhhHHHHHHHHHHHHhccccHHHHH
Confidence 4434566899999999999887776663 321110 0000 01234556677789999999
Q ss_pred HHH
Q 022442 180 VVY 182 (297)
Q Consensus 180 ~~y 182 (297)
+..
T Consensus 179 elv 181 (309)
T PF07163_consen 179 ELV 181 (309)
T ss_pred HHH
Confidence 877
No 470
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.31 E-value=4e+02 Score=27.85 Aligned_cols=132 Identities=15% Similarity=0.109 Sum_probs=77.3
Q ss_pred HcCCHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHH---------CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINA-GDRVDSALKDMAVVMKQ---------LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~-~p~~~~a~~~Lg~~l~~---------~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
..||-++|+...-.+++. .|-.++.+-..|.+|.. .+-.+.|++.|+++.+..|. ...+.+++.++.
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~---~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL---EYSGINLATLLR 331 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch---hhccccHHHHHH
Confidence 568888888888777764 44455555556666644 35677889999999999996 234555777777
Q ss_pred HcCC-HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH---HHCCChHHHHHHHHHHH
Q 022442 111 KCGK-VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY---MQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 111 ~~g~-~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y---~~~g~~~eA~~~y~~Al 186 (297)
..|+ |+...++-.-+++++. .+ +++-.+ +.-.-+...|..+ .-..+|.+|+..-+...
T Consensus 332 aaG~~Fens~Elq~IgmkLn~-------Ll-------grKG~l----eklq~YWdV~~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 332 AAGEHFENSLELQQIGMKLNS-------LL-------GRKGAL----EKLQEYWDVATYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred HhhhhccchHHHHHHHHHHHH-------Hh-------hccchH----HHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHh
Confidence 7774 4444444444444421 00 000000 0001122223222 23478888888888888
Q ss_pred HhCCCcH
Q 022442 187 MIDPDAN 193 (297)
Q Consensus 187 ~~~P~~~ 193 (297)
++.|-..
T Consensus 394 KLk~P~W 400 (1226)
T KOG4279|consen 394 KLKPPVW 400 (1226)
T ss_pred ccCCcee
Confidence 8877543
No 471
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=30.05 E-value=4.9e+02 Score=24.71 Aligned_cols=104 Identities=18% Similarity=0.032 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC---
Q 022442 98 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN--- 174 (297)
Q Consensus 98 ~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~--- 174 (297)
.+.....||++++-.|+|+-|...|+-+.+-.-.+.++. . .+.++-..|.++...+.
T Consensus 207 ~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~------------~--------~A~~~Em~alsl~~~~~~~~ 266 (414)
T PF12739_consen 207 PEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWK------------Y--------LAGAQEMAALSLLMQGQSIS 266 (414)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHH------------H--------HHhHHHHHHHHHHhcCCCCc
Confidence 344556699999999999999999998776421111110 0 12234445555555542
Q ss_pred -----------hHHHHHHHHHHHH---hCCCcHH--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 175 -----------FMAAEVVYQKAQM---IDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 175 -----------~~eA~~~y~~Al~---~~P~~~~--~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++.|...|.++-. -.|.... ....+.++...|.+.+|...+-++...
T Consensus 267 ~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 267 AKIRKDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred cccccccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 2334444444211 1122332 455677888999998888877666653
No 472
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=29.09 E-value=1.1e+02 Score=18.27 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHCCCh---HHHHHHHHHHHH
Q 022442 161 LLGNLAWAYMQKTNF---MAAEVVYQKAQM 187 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~---~eA~~~y~~Al~ 187 (297)
+.+|+||++...... .+.+.+++..+.
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELYR 32 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 456666666665433 344444444433
No 473
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=28.94 E-value=3.2e+02 Score=29.75 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=6.5
Q ss_pred hhHHHHHHHHH
Q 022442 260 EDEFVNGLEEM 270 (297)
Q Consensus 260 ~d~~~~~~~~~ 270 (297)
|++++...+..
T Consensus 1210 f~ev~~~i~~~ 1220 (1265)
T KOG1920|consen 1210 FDEVLQAIQAS 1220 (1265)
T ss_pred HHHHHHHHHhh
Confidence 56666666554
No 474
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=28.87 E-value=19 Score=35.68 Aligned_cols=115 Identities=9% Similarity=-0.070 Sum_probs=0.0
Q ss_pred CChHHHHHHHH-HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hchhhhhcCcchhHHhhhhhhHHHh
Q 022442 77 DRSEEAIEAIK-SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--IYQGEAFNGKPTKTARSHGKKFQVS 153 (297)
Q Consensus 77 g~~~eAi~~~~-~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (297)
|+...+.+.|- ++-...+. ....+....+.++.+.|++..|..++.+.-.. .+.
T Consensus 2 ~~~~~aA~~yL~~A~~a~~~-~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~---------------------- 58 (536)
T PF04348_consen 2 GDPRQAAEQYLQQAQQASGE-QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPS---------------------- 58 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChH----------------------
Confidence 33444444443 33333332 23345555678899999999999988874421 110
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHH--HHHhCCCcHH-H-hHHHHHHHHcCCHHHHHHHHHH
Q 022442 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQK--AQMIDPDANK-A-CNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~--Al~~~P~~~~-~-~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
.......-.+.+....|++++|+..+.. ...+.+.... + .-.+.++...|++-+|...+-.
T Consensus 59 ---q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 59 ---QQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp --------------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0112334467888889999999998874 2222233222 2 3458888888888877766543
No 475
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.61 E-value=2.8e+02 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=17.3
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 195 ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 195 ~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
...-+......|++++|...++++..
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35556666777777777777766554
No 476
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=27.10 E-value=33 Score=26.78 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=50.0
Q ss_pred HcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
..+.+...+.+++..+..++ ..+..+..+..+|.+.++.++.+..++..-..++. . ++.++.+.|.+++|+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~-------~-~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLD-------K-ALRLCEKHGLYEEAV 90 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CT-------H-HHHHHHTTTSHHHHH
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHH-------H-HHHHHHhcchHHHHH
Confidence 35677778888888886554 45777888999999998888888876632222221 1 234446667777777
Q ss_pred HHHHH
Q 022442 120 EMLKR 124 (297)
Q Consensus 120 ~~~~~ 124 (297)
-+|.+
T Consensus 91 ~Ly~~ 95 (143)
T PF00637_consen 91 YLYSK 95 (143)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76665
No 477
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.93 E-value=5.3e+02 Score=24.18 Aligned_cols=62 Identities=11% Similarity=-0.111 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL--IDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L--~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
...+.-+...++|..|...++.+...-|..........+ |.-+=...++++|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 346777889999999999999988753331111122223 33444567899999999997765
No 478
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=26.71 E-value=4.1e+02 Score=22.76 Aligned_cols=172 Identities=15% Similarity=0.021 Sum_probs=81.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----HCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH-
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMK-----QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK- 110 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~-----~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~- 110 (297)
++.-.++++++|...|..--.- ...+..-+.+|.-+. ..+....|+..++.+-..+-.++-.. +|.++.
T Consensus 43 YlEgi~knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~----~gLl~~~ 117 (248)
T KOG4014|consen 43 YLEGIQKNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRY----LGLLHWN 117 (248)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhh----hhhhhcc
Confidence 3444677777777777654432 233444444444332 23577777777777666544322111 221211
Q ss_pred ----HcCC--HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCC--CcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 111 ----KCGK--VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ--ETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 111 ----~~g~--~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p--~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
+.++ ..+|.+.+.++-.+....+-|+....-+. -..++. .-.| ..+.....+|.+ +.+.+.|.+.-
T Consensus 118 g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~--g~~k~~-t~ap~~g~p~~~~~~~~~---~kDMdka~qfa 191 (248)
T KOG4014|consen 118 GEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMG--GKEKFK-TNAPGEGKPLDRAELGSL---SKDMDKALQFA 191 (248)
T ss_pred CcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhc--cchhhc-ccCCCCCCCcchhhhhhh---hHhHHHHHHHH
Confidence 1122 66777777777776543332220000000 000000 0011 111122233333 45567788888
Q ss_pred HHHHHhCCCcHH-HhHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 022442 183 QKAQMIDPDANK-ACNLGLCLIKR----TRYNEARSVLEDVLYG 221 (297)
Q Consensus 183 ~~Al~~~P~~~~-~~nLg~~l~~~----g~~~eA~~~~~~al~~ 221 (297)
-+|-++ +++. -.|+...|-.- .+-++|..+-.++.+.
T Consensus 192 ~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 192 IKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 888888 3444 33555444221 2566666666666654
No 479
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.22 E-value=1.4e+02 Score=22.68 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=12.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
..|+.+|...|.+++|++.+.+...
T Consensus 43 ~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 43 QELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHccCccHHHHHHHHHHhc
Confidence 3445555555555555555555444
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.91 E-value=3.2e+02 Score=21.34 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442 80 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 124 (297)
Q Consensus 80 ~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~ 124 (297)
.+..++|.-+....=..-....+...+..+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 446777776655433211233455567888999999999999875
No 481
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=25.50 E-value=59 Score=30.30 Aligned_cols=59 Identities=19% Similarity=0.096 Sum_probs=34.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
.+.+.-+++..|+-...-++..++....+++..+..+....++++|+.-++.+....|.
T Consensus 283 ~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 283 AVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred HhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 33344455555555544455555555666666666666666666666666666666665
No 482
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=25.46 E-value=1.8e+02 Score=23.20 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=16.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
..+=..++..-+.+.|..+|+.++..+|++
T Consensus 80 RDfq~~~iaKle~e~Ae~vY~el~~~~P~H 109 (139)
T PF12583_consen 80 RDFQCSWIAKLEPENAEQVYEELLEAHPDH 109 (139)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHCcch
Confidence 334444444455566777777777777763
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.15 E-value=3.7e+02 Score=25.07 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=42.2
Q ss_pred HHHHHH--HHCCCh-HHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 164 NLAWAY--MQKTNF-MAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 164 nLg~~y--~~~g~~-~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.|..|+ ...|=. ++....+...+..=|+-. . |.-++.++...|.+++.+.+|++|+..
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 455554 334544 466667777777777654 4 788899999999999999999988875
No 484
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.04 E-value=78 Score=32.66 Aligned_cols=124 Identities=11% Similarity=0.162 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--c----hHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhchh--
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--Q----SQESLDNVLI-DLYKKCGKVEEQIEMLKRKLRLIYQG-- 132 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~----~~~~l~~~L~-~ly~~~g~~~eAi~~~~~al~~~p~~-- 132 (297)
+++...++-..|....+|+.-|.+.+.+-.+ |+ + .+...++..+ +---+-|+-++|+...-.+++..-+-
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 5777888888899999999888877665444 52 0 0001111111 01123477788888777777653110
Q ss_pred hhh--cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcC
Q 022442 133 EAF--NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRT 206 (297)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g 206 (297)
.-+ +|+..+ +. -+..-|...+-.+.|+..|++|.+..|.--.-.|++.++...|
T Consensus 279 Dm~Cl~GRIYK------Dm--------------F~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMYCLCGRIYK------DM--------------FIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ceeeeechhhh------hh--------------hhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh
Confidence 011 121111 00 1222344556778899999999999997654445555554444
No 485
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=24.12 E-value=44 Score=26.06 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHH
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
++..+..|..+|.+.+++++.+..++ ..++-+...++....+.|.+++|.-+|.+
T Consensus 41 ~~~~~~~L~~ly~~~~~~~~l~~~L~-----~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 41 NPDLHTLLLELYIKYDPYEKLLEFLK-----TSNNYDLDKALRLCEKHGLYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHHHHCTTTCCHHHHTTT-----SSSSS-CTHHHHHHHTTTSHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHcc-----cccccCHHHHHHHHHhcchHHHHHHHHHH
Confidence 45678889999999988888888777 22232234445555666666666666654
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.08 E-value=5.7e+02 Score=23.90 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442 47 AAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 47 ~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P 94 (297)
+....+...|+.-|+ .+..|.=++.++-..|.+++.|.+|+.|+..+.
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Confidence 344444444444443 233344455555555555555555555555443
No 487
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=23.87 E-value=78 Score=34.61 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
+....+|..|...|++.+|+..|..|++.--...+
T Consensus 243 R~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D 277 (1185)
T PF08626_consen 243 RLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSND 277 (1185)
T ss_pred hhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCc
Confidence 45667999999999999999999999987544333
No 488
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.83 E-value=1.9e+02 Score=22.03 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHH
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA 195 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~ 195 (297)
|-.+..||.+|...|+.+.|.+-|+.--.+-|....+
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 4578899999999999999999999988899988763
No 489
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.79 E-value=5.7e+02 Score=24.04 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+...+|.-|++..+++.|.--|+||.+.
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 4456788899999999998888888754
No 490
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.60 E-value=2.1e+02 Score=22.89 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 68 DMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 68 ~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
.+|..|..+|+.+++..++-.++.++|.
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 5899999999999999999888888886
No 491
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=23.43 E-value=3.5e+02 Score=20.78 Aligned_cols=49 Identities=31% Similarity=0.398 Sum_probs=33.7
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022442 72 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLK 123 (297)
Q Consensus 72 ~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~ 123 (297)
.+...+.....+..++.++..++. ...+++.++.+|.+.+ ..+.++.++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~--~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCcc--chhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 344567889999999998888764 3467787888887553 444455444
No 492
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.27 E-value=3.6e+02 Score=20.89 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE 117 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e 117 (297)
+....-..+++++++...+. ..=+..+=..|.. -..++.++|.-+....=.......+...|..+...|++++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHH
Confidence 34444566777777633221 1112223333333 3338999998876543321123455667888999999999
Q ss_pred HHHHHHHHH
Q 022442 118 QIEMLKRKL 126 (297)
Q Consensus 118 Ai~~~~~al 126 (297)
|.++|+.+|
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999999875
No 493
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.85 E-value=1.4e+02 Score=27.96 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGD--------RVDSALKDMAVVMKQLDRSEEAIEAI 86 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~Lg~~l~~~g~~~eAi~~~ 86 (297)
++.+|+.++..++++.|...|..|..+.. ...++++..|..+.+.++++..+-..
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66778889999999999999999987532 24577888999999998888877543
No 494
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.27 E-value=2.2e+02 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.7
Q ss_pred HHHHHHHHHCC-ChHHHHHHHHHHHHhCCCcHH
Q 022442 163 GNLAWAYMQKT-NFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 163 ~nLg~~y~~~g-~~~eA~~~y~~Al~~~P~~~~ 194 (297)
..+|..+...| +.++|..+|-+||..-|+-.+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 46888888888 899999999999988877655
No 495
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=6.5e+02 Score=26.24 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=32.4
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhC-CCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 165 LAWAYMQKTNFMAAEVVYQKAQMID-PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 165 Lg~~y~~~g~~~eA~~~y~~Al~~~-P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
+|.++...|+-++|-.+.++.+.-. |--- . .+.++..|...|+..--..++--++.
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 4666667777777777777766432 2111 1 45667777777775544444444444
No 496
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=7.8e+02 Score=23.74 Aligned_cols=65 Identities=9% Similarity=-0.075 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 132 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~ 132 (297)
..-|=..|...+-|+.|-....+.. .|. +-+....+.+|.+-.-+++|..|.+++-+|+...|..
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3445667777788999888776543 332 1223334558999999999999999999999998853
No 497
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=20.08 E-value=1.3e+02 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.004 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
+..|+..|...|.+++|++.+++...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 57799999999999999999998777
Done!