Query 022442
Match_columns 297
No_of_seqs 263 out of 1469
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.9 2.7E-25 9.3E-30 190.3 23.4 168 25-221 1-180 (217)
2 3vtx_A MAMA; tetratricopeptide 99.9 1E-24 3.5E-29 180.3 22.6 168 26-221 2-170 (184)
3 4gyw_A UDP-N-acetylglucosamine 99.9 9.8E-25 3.3E-29 218.5 20.5 171 23-221 3-174 (723)
4 2pl2_A Hypothetical conserved 99.9 1.5E-24 5.2E-29 185.7 17.4 181 10-219 19-212 (217)
5 1w3b_A UDP-N-acetylglucosamine 99.9 8.6E-23 2.9E-27 187.6 22.6 196 23-221 61-266 (388)
6 4i17_A Hypothetical protein; T 99.9 1.9E-22 6.6E-27 172.3 22.4 188 28-243 6-224 (228)
7 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-22 4E-27 186.8 22.5 259 12-272 83-367 (388)
8 4eqf_A PEX5-related protein; a 99.9 3.1E-21 1.1E-25 175.6 26.0 192 29-222 65-277 (365)
9 2h6f_A Protein farnesyltransfe 99.9 2E-22 6.7E-27 187.8 17.9 166 30-223 98-271 (382)
10 4eqf_A PEX5-related protein; a 99.9 7.8E-22 2.7E-26 179.6 17.0 209 12-221 81-310 (365)
11 2h6f_A Protein farnesyltransfe 99.9 2.3E-21 7.8E-26 180.6 20.5 181 12-221 113-304 (382)
12 2q7f_A YRRB protein; TPR, prot 99.9 1.1E-20 3.7E-25 161.2 22.9 168 26-221 54-222 (243)
13 3urz_A Uncharacterized protein 99.9 2E-21 6.8E-26 165.1 16.4 164 30-221 5-186 (208)
14 3qky_A Outer membrane assembly 99.9 1.2E-20 4.3E-25 164.6 21.9 187 26-221 12-224 (261)
15 1fch_A Peroxisomal targeting s 99.9 1.1E-19 3.8E-24 164.6 28.6 190 30-222 65-281 (368)
16 4abn_A Tetratricopeptide repea 99.9 4.4E-21 1.5E-25 183.1 19.7 167 26-221 99-287 (474)
17 3hym_B Cell division cycle pro 99.9 1.2E-20 4.2E-25 167.7 20.9 208 12-222 38-266 (330)
18 2vq2_A PILW, putative fimbrial 99.9 3E-20 1E-24 156.1 22.2 170 26-221 5-176 (225)
19 3uq3_A Heat shock protein STI1 99.9 1.9E-20 6.5E-25 160.6 21.3 190 31-221 7-236 (258)
20 3mkr_A Coatomer subunit epsilo 99.9 2.9E-20 9.9E-25 166.5 22.9 184 31-221 67-264 (291)
21 3uq3_A Heat shock protein STI1 99.9 4.5E-20 1.5E-24 158.3 22.7 158 61-221 3-202 (258)
22 3hym_B Cell division cycle pro 99.9 4.7E-20 1.6E-24 163.9 23.4 252 16-270 9-293 (330)
23 1fch_A Peroxisomal targeting s 99.9 7E-20 2.4E-24 165.9 24.4 207 13-221 81-314 (368)
24 3ieg_A DNAJ homolog subfamily 99.9 1.4E-19 5E-24 162.0 26.1 257 13-271 20-333 (359)
25 4ga2_A E3 SUMO-protein ligase 99.9 1.1E-21 3.8E-26 158.5 10.6 145 35-207 3-149 (150)
26 2y4t_A DNAJ homolog subfamily 99.9 3.5E-20 1.2E-24 172.7 22.1 103 26-130 23-125 (450)
27 4gyw_A UDP-N-acetylglucosamine 99.9 1.5E-20 5.1E-25 188.2 20.8 137 58-222 4-141 (723)
28 2ho1_A Type 4 fimbrial biogene 99.9 1.4E-19 4.6E-24 155.9 23.5 166 30-221 38-204 (252)
29 2ho1_A Type 4 fimbrial biogene 99.9 2.8E-19 9.5E-24 153.9 25.3 182 12-221 53-238 (252)
30 3cv0_A Peroxisome targeting si 99.9 1.5E-19 5.1E-24 160.4 24.0 192 29-222 21-236 (327)
31 3ieg_A DNAJ homolog subfamily 99.9 2.3E-19 8E-24 160.7 25.4 188 32-221 123-335 (359)
32 2r5s_A Uncharacterized protein 99.9 7.3E-21 2.5E-25 157.0 14.2 167 26-221 3-173 (176)
33 3qou_A Protein YBBN; thioredox 99.9 1.8E-20 6.2E-25 167.3 17.7 174 20-221 107-284 (287)
34 3as5_A MAMA; tetratricopeptide 99.9 1.2E-19 4.1E-24 147.5 21.1 163 31-221 10-173 (186)
35 2y4t_A DNAJ homolog subfamily 99.9 2.1E-19 7E-24 167.4 25.0 262 11-272 41-357 (450)
36 2q7f_A YRRB protein; TPR, prot 99.8 5.3E-20 1.8E-24 156.9 18.0 163 31-221 25-188 (243)
37 2vq2_A PILW, putative fimbrial 99.8 9.2E-19 3.2E-23 147.0 23.8 181 13-221 25-211 (225)
38 2xpi_A Anaphase-promoting comp 99.8 4.4E-19 1.5E-23 171.2 23.1 207 12-221 321-545 (597)
39 3cv0_A Peroxisome targeting si 99.8 1.5E-19 5E-24 160.5 18.0 206 14-221 39-269 (327)
40 4gco_A Protein STI-1; structur 99.8 1E-19 3.5E-24 142.9 14.6 121 54-202 4-125 (126)
41 2pzi_A Probable serine/threoni 99.8 6.1E-20 2.1E-24 182.8 16.5 153 40-221 402-563 (681)
42 4abn_A Tetratricopeptide repea 99.8 5.2E-20 1.8E-24 175.7 15.2 180 13-218 120-318 (474)
43 2xpi_A Anaphase-promoting comp 99.8 9.6E-19 3.3E-23 168.8 24.2 263 8-273 284-579 (597)
44 3u4t_A TPR repeat-containing p 99.8 7.1E-19 2.4E-23 152.8 20.6 165 30-221 4-171 (272)
45 3fp2_A TPR repeat-containing p 99.8 8.9E-19 3E-23 166.5 22.8 230 14-272 220-490 (537)
46 3vtx_A MAMA; tetratricopeptide 99.8 4.4E-19 1.5E-23 146.2 17.9 159 8-194 17-176 (184)
47 2yhc_A BAMD, UPF0169 lipoprote 99.8 9.5E-19 3.2E-23 150.0 20.5 186 29-223 4-215 (225)
48 4ga2_A E3 SUMO-protein ligase 99.8 5.3E-20 1.8E-24 148.6 10.5 132 68-230 2-135 (150)
49 3u4t_A TPR repeat-containing p 99.8 8E-19 2.7E-23 152.5 18.7 209 11-221 18-250 (272)
50 4i17_A Hypothetical protein; T 99.8 7.2E-19 2.5E-23 150.0 17.7 168 10-203 21-225 (228)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 6.1E-18 2.1E-22 146.7 23.3 205 13-221 22-244 (275)
52 1xnf_A Lipoprotein NLPI; TPR, 99.8 7.9E-19 2.7E-23 152.3 17.1 153 41-222 17-174 (275)
53 1qqe_A Vesicular transport pro 99.8 2.7E-18 9.1E-23 153.2 20.5 171 31-221 39-228 (292)
54 3fp2_A TPR repeat-containing p 99.8 2.9E-18 1E-22 162.9 21.8 206 14-221 261-491 (537)
55 2vsy_A XCC0866; transferase, g 99.8 1.2E-18 4.3E-23 169.0 19.3 154 42-223 2-159 (568)
56 3mkr_A Coatomer subunit epsilo 99.8 4.5E-18 1.6E-22 152.2 21.1 179 33-222 38-230 (291)
57 2gw1_A Mitochondrial precursor 99.8 1.1E-18 3.7E-23 164.6 17.5 189 30-221 238-444 (514)
58 3gyz_A Chaperone protein IPGC; 99.8 4E-19 1.4E-23 144.4 12.2 126 85-242 24-150 (151)
59 2pzi_A Probable serine/threoni 99.8 9.7E-19 3.3E-23 174.1 17.4 168 23-219 427-596 (681)
60 2gw1_A Mitochondrial precursor 99.8 6.6E-18 2.3E-22 159.2 21.6 190 29-221 270-478 (514)
61 3gyz_A Chaperone protein IPGC; 99.8 5.1E-19 1.8E-23 143.7 11.7 116 50-193 23-138 (151)
62 2ond_A Cleavage stimulation fa 99.8 3.7E-18 1.3E-22 153.2 17.7 204 17-222 37-271 (308)
63 3edt_B KLC 2, kinesin light ch 99.8 4.6E-18 1.6E-22 147.2 16.7 174 30-221 44-281 (283)
64 1ouv_A Conserved hypothetical 99.8 2.5E-17 8.6E-22 144.2 20.8 157 29-221 38-215 (273)
65 1ouv_A Conserved hypothetical 99.8 8.5E-17 2.9E-21 140.8 23.6 159 27-221 4-179 (273)
66 4g1t_A Interferon-induced prot 99.8 1.2E-16 4.1E-21 149.9 25.7 194 29-222 51-277 (472)
67 2vgx_A Chaperone SYCD; alterna 99.8 1.8E-18 6.1E-23 139.5 10.9 119 48-194 6-124 (148)
68 3qky_A Outer membrane assembly 99.8 1.3E-17 4.4E-22 145.4 15.9 181 9-212 28-252 (261)
69 3ulq_A Response regulator aspa 99.8 1.3E-17 4.4E-22 153.4 16.3 185 17-221 85-293 (383)
70 3nf1_A KLC 1, kinesin light ch 99.8 2.9E-17 9.9E-22 144.5 17.9 173 31-221 29-224 (311)
71 1p5q_A FKBP52, FK506-binding p 99.8 1.1E-18 3.8E-23 159.3 9.0 154 42-221 126-294 (336)
72 4g1t_A Interferon-induced prot 99.8 3.6E-17 1.2E-21 153.5 19.0 256 14-271 156-457 (472)
73 2vgx_A Chaperone SYCD; alterna 99.8 1.3E-17 4.4E-22 134.4 13.4 133 84-244 8-141 (148)
74 4gco_A Protein STI-1; structur 99.8 4E-17 1.4E-21 128.0 15.8 111 88-229 4-115 (126)
75 3q15_A PSP28, response regulat 99.7 7.3E-17 2.5E-21 148.4 19.7 171 32-222 104-291 (378)
76 3urz_A Uncharacterized protein 99.7 5.3E-17 1.8E-21 137.7 16.9 131 62-220 3-152 (208)
77 3nf1_A KLC 1, kinesin light ch 99.7 3.2E-17 1.1E-21 144.3 16.1 174 30-221 70-307 (311)
78 1qqe_A Vesicular transport pro 99.7 3.3E-17 1.1E-21 146.1 15.6 172 31-221 79-269 (292)
79 3edt_B KLC 2, kinesin light ch 99.7 4.5E-17 1.5E-21 140.9 15.7 164 40-221 12-198 (283)
80 2ifu_A Gamma-SNAP; membrane fu 99.7 1.1E-16 3.7E-21 143.7 18.1 168 32-221 39-223 (307)
81 2xcb_A PCRH, regulatory protei 99.7 1.8E-17 6.3E-22 131.8 11.4 117 50-194 5-121 (142)
82 2c2l_A CHIP, carboxy terminus 99.7 3.9E-17 1.3E-21 145.2 14.2 190 28-221 3-199 (281)
83 2ond_A Cleavage stimulation fa 99.7 5.8E-16 2E-20 138.8 21.5 173 46-221 33-232 (308)
84 2xcb_A PCRH, regulatory protei 99.7 9.5E-17 3.2E-21 127.6 14.2 132 84-243 5-137 (142)
85 3as5_A MAMA; tetratricopeptide 99.7 3.5E-16 1.2E-20 126.8 16.6 153 14-194 26-179 (186)
86 2fo7_A Synthetic consensus TPR 99.7 1.2E-15 4.1E-20 116.8 17.9 129 65-221 3-132 (136)
87 3qou_A Protein YBBN; thioredox 99.7 6.6E-16 2.3E-20 137.5 18.6 135 59-221 113-248 (287)
88 2fo7_A Synthetic consensus TPR 99.7 1.5E-15 5.1E-20 116.3 17.9 134 31-192 3-136 (136)
89 3rjv_A Putative SEL1 repeat pr 99.7 2.1E-15 7.3E-20 128.2 20.6 172 17-221 7-197 (212)
90 3upv_A Heat shock protein STI1 99.7 9.3E-16 3.2E-20 118.7 15.7 117 60-204 1-124 (126)
91 2vsy_A XCC0866; transferase, g 99.7 1.1E-15 3.9E-20 148.1 19.8 158 14-199 7-169 (568)
92 2qfc_A PLCR protein; TPR, HTH, 99.7 4.1E-15 1.4E-19 132.2 21.9 168 35-221 81-266 (293)
93 2fbn_A 70 kDa peptidylprolyl i 99.7 6.9E-17 2.3E-21 135.2 9.4 157 38-220 13-185 (198)
94 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2.4E-15 8.3E-20 126.1 18.9 149 31-194 8-156 (213)
95 1a17_A Serine/threonine protei 99.7 1.9E-15 6.7E-20 121.0 17.4 132 62-221 12-146 (166)
96 1hh8_A P67PHOX, NCF-2, neutrop 99.7 6.1E-15 2.1E-19 123.7 20.8 127 64-221 7-150 (213)
97 3u3w_A Transcriptional activat 99.7 2.8E-15 9.6E-20 133.2 19.3 167 36-221 82-266 (293)
98 4a1s_A PINS, partner of inscut 99.7 1E-15 3.4E-20 140.9 16.8 189 32-222 51-293 (411)
99 2lni_A Stress-induced-phosphop 99.7 1.9E-15 6.4E-20 116.4 15.6 122 58-207 11-133 (133)
100 4a1s_A PINS, partner of inscut 99.7 3.8E-16 1.3E-20 143.7 13.7 209 12-221 64-332 (411)
101 2e2e_A Formate-dependent nitri 99.7 6E-16 2E-20 126.7 13.3 126 41-194 22-150 (177)
102 3sf4_A G-protein-signaling mod 99.7 3.2E-16 1.1E-20 142.9 12.8 98 32-129 12-117 (406)
103 3sz7_A HSC70 cochaperone (SGT) 99.7 1.4E-15 4.8E-20 123.4 14.9 115 59-201 7-122 (164)
104 2vyi_A SGTA protein; chaperone 99.7 1.6E-15 5.5E-20 115.9 14.2 124 57-208 6-130 (131)
105 3sf4_A G-protein-signaling mod 99.7 1.5E-15 5E-20 138.5 16.5 209 10-222 23-257 (406)
106 3gw4_A Uncharacterized protein 99.7 2.2E-15 7.4E-20 125.0 15.9 162 40-221 3-176 (203)
107 2yhc_A BAMD, UPF0169 lipoprote 99.7 4.9E-15 1.7E-19 126.7 18.2 137 62-221 3-176 (225)
108 2e2e_A Formate-dependent nitri 99.7 1.8E-15 6.1E-20 123.9 14.5 125 73-225 20-148 (177)
109 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 9.1E-17 3.1E-21 152.7 7.4 152 43-220 248-414 (457)
110 3ro2_A PINS homolog, G-protein 99.7 4.2E-15 1.4E-19 131.0 17.6 191 31-221 7-252 (338)
111 4gcn_A Protein STI-1; structur 99.6 2.3E-15 8E-20 117.8 13.3 117 61-198 6-122 (127)
112 3ulq_A Response regulator aspa 99.6 4.2E-15 1.4E-19 136.5 17.2 168 31-218 145-332 (383)
113 2ooe_A Cleavage stimulation fa 99.6 1.3E-14 4.4E-19 139.4 20.6 177 18-221 260-454 (530)
114 2hr2_A Hypothetical protein; a 99.6 4.3E-15 1.5E-19 121.1 14.5 125 101-239 13-149 (159)
115 3ro2_A PINS homolog, G-protein 99.6 1.7E-15 5.7E-20 133.6 13.1 209 12-221 21-292 (338)
116 4f3v_A ESX-1 secretion system 99.6 1.1E-14 3.8E-19 129.5 18.3 181 41-221 18-237 (282)
117 2r5s_A Uncharacterized protein 99.6 2E-15 6.9E-20 124.1 12.6 133 60-221 3-137 (176)
118 3q15_A PSP28, response regulat 99.6 3.6E-14 1.2E-18 130.3 21.4 166 31-217 143-328 (378)
119 1na0_A Designed protein CTPR3; 99.6 2.3E-14 7.8E-19 108.5 16.7 120 59-206 4-125 (125)
120 2hr2_A Hypothetical protein; a 99.6 3.4E-15 1.2E-19 121.6 11.3 120 63-201 11-145 (159)
121 1a17_A Serine/threonine protei 99.6 3.4E-14 1.2E-18 113.7 17.1 130 31-188 15-146 (166)
122 3q49_B STIP1 homology and U bo 99.6 1.2E-14 4.2E-19 113.2 13.8 106 58-191 4-109 (137)
123 3upv_A Heat shock protein STI1 99.6 2.8E-14 9.4E-19 110.3 15.7 95 101-221 6-101 (126)
124 1hz4_A MALT regulatory protein 99.6 5.9E-14 2E-18 127.9 20.0 172 32-221 17-203 (373)
125 3sz7_A HSC70 cochaperone (SGT) 99.6 5.9E-14 2E-18 113.7 17.5 118 100-243 12-132 (164)
126 3rkv_A Putative peptidylprolyl 99.6 1.2E-14 4.1E-19 117.6 13.1 115 63-203 11-143 (162)
127 1hxi_A PEX5, peroxisome target 99.6 1.2E-14 4E-19 112.9 11.6 64 158-221 50-114 (121)
128 1elw_A TPR1-domain of HOP; HOP 99.6 9.5E-14 3.3E-18 104.1 16.0 113 62-202 3-116 (118)
129 3rjv_A Putative SEL1 repeat pr 99.6 2.5E-14 8.7E-19 121.5 14.3 141 46-221 3-158 (212)
130 1hxi_A PEX5, peroxisome target 99.6 2.1E-14 7.2E-19 111.4 12.4 94 65-193 19-119 (121)
131 1p5q_A FKBP52, FK506-binding p 99.6 5.1E-14 1.7E-18 128.3 16.8 133 28-188 146-294 (336)
132 2dba_A Smooth muscle cell asso 99.6 8.7E-14 3E-18 109.1 16.0 122 57-204 22-145 (148)
133 2c2l_A CHIP, carboxy terminus 99.6 1.4E-14 4.6E-19 128.7 11.6 106 60-193 1-106 (281)
134 4gcn_A Protein STI-1; structur 99.6 7.4E-14 2.5E-18 109.1 14.0 100 31-130 10-114 (127)
135 2ifu_A Gamma-SNAP; membrane fu 99.6 5.2E-14 1.8E-18 126.1 14.6 134 67-221 40-184 (307)
136 2fbn_A 70 kDa peptidylprolyl i 99.6 1.6E-14 5.3E-19 120.8 10.3 149 61-221 2-151 (198)
137 2lni_A Stress-induced-phosphop 99.5 7.9E-14 2.7E-18 107.2 13.4 120 27-174 14-133 (133)
138 2xm6_A Protein corresponding t 99.5 7.9E-13 2.7E-17 125.7 22.5 198 15-221 206-432 (490)
139 3dra_A Protein farnesyltransfe 99.5 1.1E-12 3.7E-17 118.3 22.2 154 40-221 43-215 (306)
140 1zu2_A Mitochondrial import re 99.5 1.3E-14 4.3E-19 118.1 8.5 106 42-199 15-132 (158)
141 3gw4_A Uncharacterized protein 99.5 1.5E-13 5.3E-18 113.6 15.4 159 15-193 11-181 (203)
142 2xm6_A Protein corresponding t 99.5 1E-12 3.6E-17 124.8 23.1 187 27-221 37-252 (490)
143 2vyi_A SGTA protein; chaperone 99.5 3.2E-13 1.1E-17 102.9 15.9 119 30-176 13-131 (131)
144 1wao_1 Serine/threonine protei 99.5 2E-15 6.9E-20 144.2 3.8 127 62-216 5-134 (477)
145 2if4_A ATFKBP42; FKBP-like, al 99.5 1.1E-14 3.9E-19 132.8 8.6 137 59-221 175-328 (338)
146 1elr_A TPR2A-domain of HOP; HO 99.5 1.3E-13 4.6E-18 105.2 13.3 124 61-206 2-126 (131)
147 2kck_A TPR repeat; tetratricop 99.5 5.9E-14 2E-18 104.4 10.7 68 59-128 2-69 (112)
148 2xev_A YBGF; tetratricopeptide 99.5 3.3E-13 1.1E-17 103.9 14.9 108 64-194 3-111 (129)
149 3e4b_A ALGK; tetratricopeptide 99.5 5E-13 1.7E-17 126.5 18.3 186 28-221 175-387 (452)
150 1ihg_A Cyclophilin 40; ppiase 99.5 2E-13 7E-18 126.2 15.2 124 63-214 223-363 (370)
151 3rkv_A Putative peptidylprolyl 99.5 5E-13 1.7E-17 107.9 15.7 113 101-221 13-126 (162)
152 3dra_A Protein farnesyltransfe 99.5 2.2E-12 7.4E-17 116.4 21.4 180 14-221 51-250 (306)
153 3ro3_A PINS homolog, G-protein 99.5 4.1E-13 1.4E-17 105.8 14.8 139 63-221 9-158 (164)
154 1wao_1 Serine/threonine protei 99.5 1.8E-14 6.2E-19 137.6 7.7 130 36-193 13-155 (477)
155 2kck_A TPR repeat; tetratricop 99.5 2.5E-13 8.6E-18 101.0 11.5 102 93-222 2-107 (112)
156 2ooe_A Cleavage stimulation fa 99.5 2.2E-12 7.4E-17 123.8 20.9 180 14-221 304-492 (530)
157 1na0_A Designed protein CTPR3; 99.5 1.4E-12 4.8E-17 98.4 15.6 116 30-173 10-125 (125)
158 1dce_A Protein (RAB geranylger 99.5 9.5E-13 3.3E-17 128.3 17.8 159 41-230 40-227 (567)
159 2qfc_A PLCR protein; TPR, HTH, 99.5 1.9E-12 6.6E-17 114.8 18.2 136 34-189 120-267 (293)
160 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 9.1E-14 3.1E-18 131.9 10.2 165 44-223 201-382 (457)
161 3q49_B STIP1 homology and U bo 99.5 7.5E-13 2.6E-17 102.9 13.3 103 27-131 7-109 (137)
162 1hz4_A MALT regulatory protein 99.5 3.8E-12 1.3E-16 115.9 20.0 171 32-221 96-282 (373)
163 1elw_A TPR1-domain of HOP; HOP 99.5 4.1E-12 1.4E-16 95.0 16.8 95 101-221 6-101 (118)
164 3mv2_B Coatomer subunit epsilo 99.5 8.4E-12 2.9E-16 112.3 21.4 163 27-221 98-282 (310)
165 3ro3_A PINS homolog, G-protein 99.5 1.5E-12 5.1E-17 102.5 14.5 141 31-191 11-161 (164)
166 3k9i_A BH0479 protein; putativ 99.5 1.7E-13 5.7E-18 105.0 8.4 91 76-194 3-96 (117)
167 2if4_A ATFKBP42; FKBP-like, al 99.5 1.1E-13 3.8E-18 126.2 8.5 135 32-194 182-334 (338)
168 3q7a_A Farnesyltransferase alp 99.4 7.5E-12 2.5E-16 114.5 20.2 157 43-230 68-243 (349)
169 2xev_A YBGF; tetratricopeptide 99.4 3.6E-12 1.2E-16 97.9 15.5 96 103-221 6-105 (129)
170 3dss_A Geranylgeranyl transfer 99.4 1.9E-11 6.3E-16 111.3 22.1 153 41-221 41-222 (331)
171 3k9i_A BH0479 protein; putativ 99.4 2.5E-13 8.5E-18 104.0 8.1 88 111-221 2-90 (117)
172 4b4t_Q 26S proteasome regulato 99.4 4.5E-12 1.5E-16 117.3 18.1 166 36-221 11-204 (434)
173 4f3v_A ESX-1 secretion system 99.4 1.6E-12 5.4E-17 115.6 13.5 137 36-198 109-247 (282)
174 3u3w_A Transcriptional activat 99.4 3.7E-12 1.3E-16 112.9 15.6 135 35-189 121-267 (293)
175 3dss_A Geranylgeranyl transfer 99.4 3.1E-11 1.1E-15 109.8 20.9 179 15-221 49-267 (331)
176 2dba_A Smooth muscle cell asso 99.4 6.9E-12 2.4E-16 98.1 14.5 102 27-130 26-130 (148)
177 1dce_A Protein (RAB geranylger 99.4 2.2E-12 7.6E-17 125.8 13.9 166 17-210 50-244 (567)
178 1zu2_A Mitochondrial import re 99.4 1E-12 3.6E-17 106.7 8.5 86 110-221 13-120 (158)
179 1elr_A TPR2A-domain of HOP; HO 99.4 2.8E-12 9.5E-17 97.8 10.4 101 30-130 5-110 (131)
180 1ihg_A Cyclophilin 40; ppiase 99.4 7.4E-12 2.5E-16 115.7 14.2 122 32-181 226-363 (370)
181 3n71_A Histone lysine methyltr 99.3 2.6E-11 8.9E-16 116.1 16.8 135 69-221 315-464 (490)
182 3e4b_A ALGK; tetratricopeptide 99.3 3.2E-11 1.1E-15 114.0 16.6 184 28-221 140-351 (452)
183 3q7a_A Farnesyltransferase alp 99.3 1.1E-10 3.8E-15 106.7 17.8 167 14-208 72-258 (349)
184 2l6j_A TPR repeat-containing p 99.3 1.9E-12 6.6E-17 96.7 5.1 91 101-217 6-103 (111)
185 2kat_A Uncharacterized protein 99.3 1.5E-11 5.3E-16 93.3 9.5 79 117-221 3-82 (115)
186 3ma5_A Tetratricopeptide repea 99.3 2.2E-11 7.5E-16 90.8 9.6 67 155-221 3-70 (100)
187 2kat_A Uncharacterized protein 99.3 4.7E-11 1.6E-15 90.5 11.4 82 47-130 3-84 (115)
188 1na3_A Designed protein CTPR2; 99.2 1.6E-10 5.4E-15 83.0 12.4 81 100-206 10-91 (91)
189 3n71_A Histone lysine methyltr 99.2 2E-10 6.7E-15 110.0 16.4 133 39-189 319-465 (490)
190 3mv2_B Coatomer subunit epsilo 99.2 3.7E-10 1.3E-14 101.6 17.2 149 48-221 85-240 (310)
191 1xi4_A Clathrin heavy chain; a 99.2 7.3E-10 2.5E-14 115.5 20.7 63 159-221 1221-1309(1630)
192 1xi4_A Clathrin heavy chain; a 99.2 6.4E-10 2.2E-14 115.9 19.2 178 16-220 1066-1249(1630)
193 2l6j_A TPR repeat-containing p 99.2 2.2E-11 7.6E-16 90.8 5.9 101 62-184 3-103 (111)
194 4b4t_Q 26S proteasome regulato 99.2 1.6E-10 5.4E-15 106.8 12.8 171 31-221 57-245 (434)
195 1b89_A Protein (clathrin heavy 99.2 5E-12 1.7E-16 118.7 2.4 141 31-218 34-174 (449)
196 1klx_A Cysteine rich protein B 99.2 5.7E-10 1.9E-14 88.3 13.8 111 42-188 8-126 (138)
197 1na3_A Designed protein CTPR2; 99.1 6.2E-10 2.1E-14 79.8 11.4 85 61-173 7-91 (91)
198 1klx_A Cysteine rich protein B 99.1 2.8E-09 9.7E-14 84.2 13.7 109 77-221 9-126 (138)
199 3ly7_A Transcriptional activat 99.0 5.8E-09 2E-13 95.6 16.2 146 20-194 185-345 (372)
200 2kc7_A BFR218_protein; tetratr 99.0 4.3E-10 1.5E-14 82.6 7.1 83 105-221 6-90 (99)
201 1b89_A Protein (clathrin heavy 99.0 2.5E-10 8.6E-15 107.2 7.1 192 9-221 45-236 (449)
202 3ma5_A Tetratricopeptide repea 99.0 7.5E-10 2.6E-14 82.3 7.5 70 59-130 3-72 (100)
203 3qww_A SET and MYND domain-con 99.0 2.4E-09 8.3E-14 100.9 11.0 102 111-230 310-422 (433)
204 2kc7_A BFR218_protein; tetratr 99.0 1.8E-09 6.3E-14 79.1 7.6 88 33-130 4-92 (99)
205 3bee_A Putative YFRE protein; 98.9 4.6E-08 1.6E-12 72.2 12.7 70 155-224 2-75 (93)
206 3qww_A SET and MYND domain-con 98.9 1.1E-08 3.9E-13 96.3 11.7 103 74-194 309-422 (433)
207 3qwp_A SET and MYND domain-con 98.9 3.3E-08 1.1E-12 93.0 14.5 118 70-205 294-426 (429)
208 3qwp_A SET and MYND domain-con 98.8 1.4E-08 4.9E-13 95.5 11.0 116 108-242 296-422 (429)
209 3ly7_A Transcriptional activat 98.8 1.5E-07 5.3E-12 86.2 16.8 146 54-221 185-339 (372)
210 4e6h_A MRNA 3'-END-processing 98.8 3.4E-07 1.2E-11 90.8 20.6 172 47-221 327-533 (679)
211 3u64_A Protein TP_0956; tetrat 98.6 2.6E-06 8.9E-11 75.4 17.9 105 114-242 178-295 (301)
212 2v5f_A Prolyl 4-hydroxylase su 98.6 5.1E-07 1.7E-11 67.6 10.9 78 103-199 9-87 (104)
213 4e6h_A MRNA 3'-END-processing 98.5 1.9E-06 6.6E-11 85.4 16.7 139 80-221 326-499 (679)
214 4g26_A Pentatricopeptide repea 98.5 1.6E-05 5.5E-10 76.1 21.8 159 34-221 31-204 (501)
215 3bee_A Putative YFRE protein; 98.5 5.1E-07 1.8E-11 66.5 8.7 51 45-95 25-75 (93)
216 1pc2_A Mitochondria fission pr 98.5 1.8E-06 6.2E-11 69.2 11.4 80 156-242 29-114 (152)
217 3u64_A Protein TP_0956; tetrat 98.5 1.6E-06 5.4E-11 76.8 11.9 110 58-192 147-273 (301)
218 2v5f_A Prolyl 4-hydroxylase su 98.3 5.3E-06 1.8E-10 61.9 10.6 63 159-221 5-75 (104)
219 1pc2_A Mitochondria fission pr 98.1 1.5E-05 5.1E-10 63.9 10.2 86 44-130 13-102 (152)
220 4g26_A Pentatricopeptide repea 98.1 0.00021 7.3E-09 68.2 19.0 153 66-246 29-205 (501)
221 2uy1_A Cleavage stimulation fa 98.1 0.0002 6.7E-09 68.3 18.0 162 46-218 196-380 (493)
222 2uy1_A Cleavage stimulation fa 97.6 0.0027 9.3E-08 60.4 17.7 193 17-220 200-412 (493)
223 1nzn_A CGI-135 protein, fissio 97.5 0.0012 4E-08 51.1 10.8 80 157-243 33-118 (126)
224 4h7y_A Dual specificity protei 97.4 0.0065 2.2E-07 48.3 13.9 109 92-221 8-123 (161)
225 1nzn_A CGI-135 protein, fissio 97.3 0.0031 1.1E-07 48.6 10.7 87 43-130 15-105 (126)
226 3ffl_A Anaphase-promoting comp 97.3 0.0024 8.2E-08 51.6 10.4 95 107-218 28-148 (167)
227 4h7y_A Dual specificity protei 97.2 0.012 4.1E-07 46.8 13.8 124 57-207 7-142 (161)
228 3o48_A Mitochondria fission 1 97.1 0.0058 2E-07 47.4 10.9 79 158-243 39-122 (134)
229 1y8m_A FIS1; mitochondria, unk 97.1 0.0072 2.5E-07 47.5 11.5 79 158-243 38-121 (144)
230 4gns_B Protein CSD3, chitin bi 96.9 0.021 7.1E-07 57.0 15.1 134 75-218 260-397 (754)
231 3ffl_A Anaphase-promoting comp 96.7 0.012 4E-07 47.5 9.5 94 31-124 22-147 (167)
232 2ff4_A Probable regulatory pro 96.4 0.09 3.1E-06 48.2 15.0 105 111-220 127-233 (388)
233 2ff4_A Probable regulatory pro 96.3 0.06 2.1E-06 49.4 13.5 88 39-128 125-234 (388)
234 3mkq_A Coatomer beta'-subunit; 96.3 0.23 7.9E-06 48.8 18.5 112 74-217 663-774 (814)
235 3mkq_A Coatomer beta'-subunit; 95.8 0.27 9.4E-06 48.3 16.4 46 39-89 662-707 (814)
236 3o48_A Mitochondria fission 1 95.6 0.095 3.2E-06 40.6 9.5 65 32-96 43-111 (134)
237 1y8m_A FIS1; mitochondria, unk 95.6 0.14 4.9E-06 40.1 10.5 68 29-96 39-110 (144)
238 3spa_A Mtrpol, DNA-directed RN 95.6 0.12 4E-06 53.1 12.5 100 100-221 128-230 (1134)
239 3mkq_B Coatomer subunit alpha; 95.5 0.27 9.1E-06 40.0 12.2 102 37-184 13-114 (177)
240 1zbp_A Hypothetical protein VP 95.4 0.34 1.1E-05 42.1 13.2 57 39-95 7-63 (273)
241 1ya0_A SMG-7 transcript varian 95.3 0.077 2.6E-06 50.4 9.9 63 160-222 153-216 (497)
242 3kae_A CDC27, possible protein 94.9 0.54 1.8E-05 38.2 12.0 138 41-198 14-153 (242)
243 3txn_A 26S proteasome regulato 94.8 1.4 4.9E-05 40.3 16.6 171 31-221 21-210 (394)
244 4gns_B Protein CSD3, chitin bi 94.5 0.69 2.4E-05 46.1 14.6 117 42-185 261-397 (754)
245 3spa_A Mtrpol, DNA-directed RN 94.5 0.37 1.3E-05 49.6 12.6 101 65-193 129-237 (1134)
246 1ya0_A SMG-7 transcript varian 94.1 0.33 1.1E-05 46.0 10.8 76 103-204 156-232 (497)
247 4b4t_P 26S proteasome regulato 94.0 3.8 0.00013 38.0 18.3 102 100-221 138-247 (445)
248 4b4t_R RPN7, 26S proteasome re 93.7 0.2 6.9E-06 46.5 8.4 108 62-189 130-238 (429)
249 3txn_A 26S proteasome regulato 93.3 1.2 4.2E-05 40.8 12.9 127 43-188 73-210 (394)
250 4b4t_S RPN3, 26S proteasome re 93.1 0.12 4.1E-06 49.1 5.9 132 39-192 146-303 (523)
251 3mkq_B Coatomer subunit alpha; 92.9 2.2 7.4E-05 34.6 12.3 54 63-126 8-61 (177)
252 2wpv_A GET4, UPF0363 protein Y 90.5 8.8 0.0003 33.9 16.5 161 39-219 23-215 (312)
253 1zbp_A Hypothetical protein VP 88.2 2 6.8E-05 37.2 8.4 53 169-221 7-60 (273)
254 3uzd_A 14-3-3 protein gamma; s 87.9 12 0.0004 31.9 14.4 46 176-221 148-203 (248)
255 4fhn_B Nucleoporin NUP120; pro 87.3 3.2 0.00011 43.3 10.9 140 68-217 817-963 (1139)
256 4b4t_P 26S proteasome regulato 86.7 11 0.00038 34.8 13.3 105 65-188 139-247 (445)
257 3lpz_A GET4 (YOR164C homolog); 85.5 20 0.00067 32.0 16.8 126 39-183 22-160 (336)
258 4fhn_B Nucleoporin NUP120; pro 85.1 15 0.00052 38.2 14.7 120 40-184 823-963 (1139)
259 2br9_A 14-3-3E, 14-3-3 protein 83.3 19 0.00065 30.3 11.9 46 176-221 147-202 (234)
260 1qsa_A Protein (soluble lytic 83.1 23 0.00078 34.3 14.1 58 163-221 290-348 (618)
261 4b4t_R RPN7, 26S proteasome re 83.0 5 0.00017 36.9 9.1 98 31-128 133-237 (429)
262 3kae_A CDC27, possible protein 82.2 19 0.00064 29.2 18.2 88 38-130 42-145 (242)
263 2npm_A 14-3-3 domain containin 77.4 33 0.0011 29.3 13.1 46 176-221 173-227 (260)
264 3efz_A 14-3-3 protein; 14-3-3, 76.9 23 0.0008 30.4 10.5 47 175-221 168-226 (268)
265 3ubw_A 14-3-3E, 14-3-3 protein 76.0 37 0.0013 29.1 13.9 46 176-221 173-228 (261)
266 2o8p_A 14-3-3 domain containin 75.4 35 0.0012 28.5 13.3 49 172-220 138-196 (227)
267 2crb_A Nuclear receptor bindin 73.8 5.6 0.00019 28.4 4.8 30 159-188 15-44 (97)
268 3ax2_A Mitochondrial import re 71.4 7.6 0.00026 26.5 4.9 29 67-95 21-49 (73)
269 1wy6_A Hypothetical protein ST 71.3 15 0.00051 28.7 7.0 59 163-221 94-154 (172)
270 3iqu_A 14-3-3 protein sigma; s 70.8 47 0.0016 28.0 12.6 47 175-221 149-205 (236)
271 1wy6_A Hypothetical protein ST 69.5 35 0.0012 26.6 8.8 54 73-128 101-154 (172)
272 2w2u_A Hypothetical P60 katani 66.5 9.6 0.00033 26.6 4.8 28 161-188 21-48 (83)
273 2v6y_A AAA family ATPase, P60 63.5 12 0.0004 26.0 4.8 27 162-188 14-40 (83)
274 4ady_A RPN2, 26S proteasome re 63.1 80 0.0027 32.2 12.5 55 165-220 530-588 (963)
275 2ijq_A Hypothetical protein; s 63.1 45 0.0016 26.3 8.7 62 67-128 36-104 (161)
276 3ax2_A Mitochondrial import re 62.5 18 0.00061 24.6 5.3 32 163-194 21-52 (73)
277 3mv2_A Coatomer subunit alpha; 62.3 83 0.0028 27.8 11.5 57 188-248 201-259 (325)
278 4gq2_M Nucleoporin NUP120; bet 60.3 1.4E+02 0.0049 30.2 14.0 117 67-193 814-932 (950)
279 4b4t_S RPN3, 26S proteasome re 59.6 48 0.0016 31.4 9.6 66 159-226 231-304 (523)
280 4a5x_A MITD1, MIT domain-conta 58.9 16 0.00054 25.6 4.8 28 161-188 18-45 (86)
281 2crb_A Nuclear receptor bindin 58.6 12 0.00042 26.7 4.0 21 68-88 20-40 (97)
282 2v6y_A AAA family ATPase, P60 58.0 11 0.00039 26.1 3.9 18 73-90 21-38 (83)
283 1o9d_A 14-3-3-like protein C; 57.9 88 0.003 26.6 14.8 46 176-221 152-207 (260)
284 1om2_A Protein (mitochondrial 56.3 35 0.0012 24.4 6.3 29 67-95 24-52 (95)
285 2v6x_A Vacuolar protein sortin 56.0 19 0.00064 24.9 4.8 28 161-188 15-42 (85)
286 4a5x_A MITD1, MIT domain-conta 55.8 20 0.00068 25.1 4.9 23 106-128 23-45 (86)
287 1wfd_A Hypothetical protein 15 54.8 20 0.00067 25.5 4.8 28 161-188 17-44 (93)
288 3mkr_B Coatomer subunit alpha; 54.5 1.1E+02 0.0039 26.8 12.5 128 105-248 108-250 (320)
289 3t5x_A PCI domain-containing p 50.6 38 0.0013 27.6 6.5 34 160-193 15-48 (203)
290 1qsa_A Protein (soluble lytic 49.1 1.9E+02 0.0064 27.8 18.6 162 45-216 268-437 (618)
291 2cpt_A SKD1 protein, vacuolar 48.3 22 0.00076 26.4 4.3 27 162-188 21-47 (117)
292 3esl_A Checkpoint serine/threo 47.1 76 0.0026 26.0 7.7 79 50-129 58-145 (202)
293 4gq2_M Nucleoporin NUP120; bet 46.8 2.1E+02 0.0072 28.9 12.7 86 39-128 820-926 (950)
294 3re2_A Predicted protein; meni 45.7 83 0.0028 28.4 8.2 61 159-219 255-323 (472)
295 4ady_A RPN2, 26S proteasome re 44.2 2.8E+02 0.0094 28.3 16.4 187 28-220 406-622 (963)
296 1om2_A Protein (mitochondrial 43.3 21 0.00072 25.6 3.3 32 163-194 24-55 (95)
297 3t5v_B Nuclear mRNA export pro 43.0 52 0.0018 30.5 6.9 96 78-192 141-254 (455)
298 2w2u_A Hypothetical P60 katani 43.0 53 0.0018 22.6 5.4 16 113-128 33-48 (83)
299 2rpa_A Katanin P60 ATPase-cont 41.1 32 0.0011 23.6 3.9 47 196-242 16-65 (78)
300 2rpa_A Katanin P60 ATPase-cont 40.9 28 0.00095 24.0 3.5 26 163-188 16-41 (78)
301 3t5x_A PCI domain-containing p 39.6 62 0.0021 26.3 6.2 30 66-95 17-46 (203)
302 3u84_A Menin; MLL, JUND, ledgf 38.8 1.2E+02 0.0039 28.1 8.1 43 177-219 297-345 (550)
303 2ijq_A Hypothetical protein; s 37.6 1.2E+02 0.004 23.8 7.2 59 163-221 36-104 (161)
304 2cwy_A Hypothetical protein TT 35.9 1.1E+02 0.0039 21.5 7.3 59 68-128 6-68 (94)
305 3t5v_B Nuclear mRNA export pro 35.5 1E+02 0.0034 28.6 7.5 88 44-131 141-253 (455)
306 3eab_A Spastin; spastin, MIT, 34.7 87 0.003 22.0 5.4 16 228-243 60-75 (89)
307 4gq4_A Menin; tumor suppressor 32.7 1.6E+02 0.0055 27.1 8.0 62 158-219 261-330 (489)
308 2cwy_A Hypothetical protein TT 31.8 1.2E+02 0.0041 21.3 5.9 55 164-220 6-67 (94)
309 3bu8_A Telomeric repeat-bindin 28.9 65 0.0022 26.8 4.4 43 164-206 119-162 (235)
310 2cpt_A SKD1 protein, vacuolar 28.8 85 0.0029 23.1 4.8 16 75-90 30-45 (117)
311 2wvi_A Mitotic checkpoint seri 28.5 99 0.0034 24.3 5.4 75 49-129 43-126 (164)
312 3lpz_A GET4 (YOR164C homolog); 27.2 3.2E+02 0.011 24.0 14.6 56 160-215 95-159 (336)
313 2dl1_A Spartin; SPG20, MIT, st 26.2 85 0.0029 23.3 4.3 26 162-187 25-50 (116)
314 2cfu_A SDSA1; SDS-hydrolase, l 25.6 76 0.0026 30.8 5.1 44 36-79 456-499 (658)
315 2v6x_A Vacuolar protein sortin 25.5 1.1E+02 0.0036 20.9 4.6 15 75-89 25-39 (85)
316 3bqo_A Telomeric repeat-bindin 25.4 53 0.0018 26.9 3.3 37 165-201 123-160 (211)
317 1wfd_A Hypothetical protein 15 25.3 84 0.0029 22.0 4.1 17 74-90 26-42 (93)
318 4a1g_A Mitotic checkpoint seri 24.5 1.3E+02 0.0045 23.3 5.4 46 176-221 82-130 (152)
319 3ph0_C ASCG; type III secretio 24.2 1.5E+02 0.005 19.0 6.4 52 66-119 9-60 (61)
320 2cfu_A SDSA1; SDS-hydrolase, l 22.8 1.3E+02 0.0046 29.0 6.3 48 160-207 450-498 (658)
321 4aez_C MAD3, mitotic spindle c 22.7 2.9E+02 0.01 22.8 7.5 51 79-129 130-180 (223)
322 2pm7_A Protein WEB1, protein t 21.9 4.4E+02 0.015 23.7 9.5 23 195-217 339-361 (399)
323 4abx_A DNA repair protein RECN 21.8 2E+02 0.0069 22.4 6.2 48 48-95 75-122 (175)
324 3snx_A SUSD homolog, putative 21.0 62 0.0021 29.8 3.4 54 40-93 162-221 (460)
325 1yua_A Topoisomerase I; gene-r 20.4 32 0.0011 25.3 1.0 22 275-296 44-65 (122)
326 2wvi_A Mitotic checkpoint seri 20.4 1.7E+02 0.006 22.9 5.4 44 178-221 79-125 (164)
327 3iqu_A 14-3-3 protein sigma; s 20.3 1.9E+02 0.0066 24.1 5.9 42 161-202 10-53 (236)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=2.7e-25 Score=190.33 Aligned_cols=168 Identities=19% Similarity=0.147 Sum_probs=155.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHH
Q 022442 25 VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV 104 (297)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~ 104 (297)
||++..++...+.++...|++++|+..|+++++.+|+++.++.++|.++.++|++++|+..|+++++++|+++ .....
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHH
Confidence 6888889999999999999999999999999999999999999999999999999999999999999999853 45566
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442 105 LIDLYKKC-----------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 105 L~~ly~~~-----------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g 173 (297)
+|.+|... |++++|+..|++++++. |+++.++.++|.+|..+|
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------------------------PRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcC
Confidence 89999999 99999999999999985 457789999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++|+.+|+++++++ +++. +.++|.+|..+|++++|+..|++++..
T Consensus 133 ~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 133 ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999 8888 999999999999999999999999997
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.94 E-value=1e-24 Score=180.26 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=155.4
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
+...+.|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++...|+.. .....+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHH
Confidence 345567999999999999999999999999999999999999999999999999999999999999999853 455568
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
|.++...+++++|+..+++++++. |++..++..+|.+|..+|++++|+.+|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN--------------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 999999999999999999999874 456778999999999999999999999999
Q ss_pred HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++|+++. +.++|.+|..+|++++|+..|+++++.
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999998 999999999999999999999999997
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.93 E-value=9.8e-25 Score=218.45 Aligned_cols=171 Identities=18% Similarity=0.212 Sum_probs=159.1
Q ss_pred hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442 23 HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD 102 (297)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~ 102 (297)
.++|+...++..++.++...|++++|+.+|++|++++|+++.++.+||.+|.++|++++|++.|+++++++|+++ ..+
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~ 80 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAY 80 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHH
Confidence 456777788999999999999999999999999999999999999999999999999999999999999999854 456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
+.||.+|..+|++++|++.|+++++++ |+++.++++||.+|..+|++++|+.+|
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~--------------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQIN--------------------------PAFADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 679999999999999999999999984 467889999999999999999999999
Q ss_pred HHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 183 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 183 ~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++|++++|+++. +.+||.+|..+|++++|+..++++++.
T Consensus 135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 999999999998 999999999999999999999999875
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=1.5e-24 Score=185.67 Aligned_cols=181 Identities=17% Similarity=0.080 Sum_probs=148.5
Q ss_pred ccccchhhhhhhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-----------C
Q 022442 10 IFSSKKEDLFHVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-----------D 77 (297)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~-----------g 77 (297)
+...+....|....+ -|....+++.++.++...|++++|+..|+++++++|+++.++.++|.++..+ |
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g 98 (217)
T 2pl2_A 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG 98 (217)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 334455566755444 4777778999999999999999999999999999999999999999999999 9
Q ss_pred ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC
Q 022442 78 RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157 (297)
Q Consensus 78 ~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~ 157 (297)
++++|+..|+++++++|+++ .....+|.+|...|++++|+..|++++++. +
T Consensus 99 ~~~~A~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------------~ 149 (217)
T 2pl2_A 99 YLEQALSVLKDAERVNPRYA--PLHLQRGLVYALLGERDKAEASLKQALALE---------------------------D 149 (217)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------C
T ss_pred CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcc---------------------------c
Confidence 99999999999999999854 455668999999999999999999999973 2
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
++.++.++|.+|..+|++++|+..|+++++++|+++. +.++|.++..+|++++|+..|+++-
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999998 9999999999999999999998864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=8.6e-23 Score=187.64 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=110.8
Q ss_pred hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442 23 HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD 102 (297)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~ 102 (297)
...|....++...+.++...|++++|+..|++++..+|++..++.++|.++...|++++|+..|++++..+|+.. ...
T Consensus 61 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~ 138 (388)
T 1w3b_A 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY--CVR 138 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--HHH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHH
Confidence 334544556666666666777777777777777777777777777777777777777777777777777777632 334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHHHHHHHHHCC
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~nLg~~y~~~g 173 (297)
..+|.++...|++++|+..|+++++..|... ++.. ........+ ..+. +.++|++..++.++|.++...|
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 4466677777777777777777777655321 1100 000000000 0011 2444555555555555555555
Q ss_pred ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++|+..|++++.++|+++. +.++|.++..+|++++|+..|++++..
T Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555555555555555555554 555555555555555555555555554
No 6
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=1.9e-22 Score=172.31 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=160.1
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442 28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI 106 (297)
Q Consensus 28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~ 106 (297)
++..++..+..+...|++++|+..|++++..+| .+..+++++|.++..+|++++|+..|++++..+|++ ......+|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--ANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--HHHHHHHH
Confidence 346788889999999999999999999999998 888999999999999999999999999999999984 35666799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
.+|..+|++++|+..|++++++.|....+. .....++.++|.++..+|++++|+.+|++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIE-------------------KLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHH-------------------HHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999876321100 0012579999999999999999999999999
Q ss_pred HhCCC--cHH-HhHHHHHHHHcCCH---------------------------HHHHHHHHHHHhcCCCCCcchhhHHHHH
Q 022442 187 MIDPD--ANK-ACNLGLCLIKRTRY---------------------------NEARSVLEDVLYGRIPGCEDGRTRKRAE 236 (297)
Q Consensus 187 ~~~P~--~~~-~~nLg~~l~~~g~~---------------------------~eA~~~~~~al~~~~~~~~~~~~~~~a~ 236 (297)
+++|+ ++. +.+||.+|..+|+. ++|+..|++++.. .|.+.. +.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l---~p~~~~----~~ 217 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL---SPNRTE----IK 217 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTTCHH----HH
T ss_pred hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHH----HH
Confidence 99999 888 99999999999988 8899999999987 444433 45
Q ss_pred HHHHHHH
Q 022442 237 ELLLELE 243 (297)
Q Consensus 237 ~~l~~~~ 243 (297)
.++..+.
T Consensus 218 ~~l~~i~ 224 (228)
T 4i17_A 218 QMQDQVK 224 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=1.2e-22 Score=186.78 Aligned_cols=259 Identities=19% Similarity=0.162 Sum_probs=198.4
Q ss_pred ccchhhhhhhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 12 SSKKEDLFHVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
..+..+.|..+.+ .|....++...+.++...|++++|+..|+++++.+|+...++..+|.++..+|++++|++.|++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445566644444 465566788889999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhc--CcchhHHhhhhh---hHH--HhcCCCcHHHH
Q 022442 91 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFN--GKPTKTARSHGK---KFQ--VSVRQETSRLL 162 (297)
Q Consensus 91 ~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~--~~~~~~~~~~~~---~~~--~~l~p~~~~~l 162 (297)
..+|++. ..+..+|.+|...|++++|+..|++++++.|... ++. +........... .+. +.+.|+++.++
T Consensus 163 ~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQPNFA--VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHCTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 9999853 4556689999999999999999999999987532 111 100000000011 111 57789999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhh
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRT 231 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~ 231 (297)
.++|.+|..+|++++|+.+|+++++++|+++. +.++|.++...|++++|+..|++++...+.... ....
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999998 999999999999999999999999987432221 2345
Q ss_pred HHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHh
Q 022442 232 RKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVR 272 (297)
Q Consensus 232 ~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~ 272 (297)
++.|...+.......| .+.+...+|..+ +++..+.|+..+.
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777776654444 344555555544 3666666666654
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=3.1e-21 Score=175.57 Aligned_cols=192 Identities=16% Similarity=0.103 Sum_probs=162.7
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
..+++..+..+...|++++|+.+|++++..+|+++.++..+|.++..+|++++|+..|++++.++|++. .....+|.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence 335888899999999999999999999999999999999999999999999999999999999999853 456668999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhc-Cc---------chhHHhhhhh------hHH--HhcCCC--cHHHHHHHHHH
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFN-GK---------PTKTARSHGK------KFQ--VSVRQE--TSRLLGNLAWA 168 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~-~~---------~~~~~~~~~~------~~~--~~l~p~--~~~~l~nLg~~ 168 (297)
|...|++++|+..|++++++.|...... .. ........++ .+. +.+.|+ ++.++.++|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999999987532111 00 0011111111 111 577898 89999999999
Q ss_pred HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
|..+|++++|+.+|+++++++|+++. +.++|.+|..+|++++|+..|++++...
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998 9999999999999999999999999973
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=2e-22 Score=187.84 Aligned_cols=166 Identities=11% Similarity=0.001 Sum_probs=151.5
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~-~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
.++...+.++...|++++|+..|+++|.++|++..+|+++|.++..+|+ +++|+..|++++.++|++. .+++.+|.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~--~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHH
Confidence 3577778888899999999999999999999999999999999999997 9999999999999999854 456668999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
|..+|++++|+..|+++|+++ |++..+|+++|+++..+|++++|+.+|++++++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld--------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD--------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC--------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 999999999999999999985 467789999999999999999999999999999
Q ss_pred CCCcHH-HhHHHHHHHH-cCCHHHH-----HHHHHHHHhcCC
Q 022442 189 DPDANK-ACNLGLCLIK-RTRYNEA-----RSVLEDVLYGRI 223 (297)
Q Consensus 189 ~P~~~~-~~nLg~~l~~-~g~~~eA-----~~~~~~al~~~~ 223 (297)
+|++.. |+++|.+|.. .|++++| +..|++++...+
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P 271 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 271 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence 999998 9999999999 5665888 589999998743
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=7.8e-22 Score=179.57 Aligned_cols=209 Identities=19% Similarity=0.142 Sum_probs=165.0
Q ss_pred ccchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 12 SSKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
.......|. .+...|....++...+.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 344555664 4444577777888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcchHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhch--hh-hhcCcchhHHhhhh---h---hHH--
Q 022442 91 GLCSKQSQE--------SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ--GE-AFNGKPTKTARSHG---K---KFQ-- 151 (297)
Q Consensus 91 ~~~P~~~~~--------~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~--~~-~~~~~~~~~~~~~~---~---~~~-- 151 (297)
.+.|+.... .+...+|.+|...|++++|+.+|++++++.|. .. .+. .........+ . .+.
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT-GLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH-HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH-HHHHHHHHCCCHHHHHHHHHHH
Confidence 999963211 11223588999999999999999999999875 22 111 0111111111 1 111
Q ss_pred HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 152 ~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+.|+++.++.++|.+|..+|++++|+.+|+++++++|+++. +.+||.+|..+|++++|+..|++++..
T Consensus 240 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5778999999999999999999999999999999999999998 999999999999999999999999987
No 11
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=2.3e-21 Score=180.64 Aligned_cols=181 Identities=10% Similarity=-0.005 Sum_probs=160.1
Q ss_pred ccchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 12 SSKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF 89 (297)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a 89 (297)
....-+.| +++...|....++...+.++...|+ +++|+.+|++++.++|++..+|+++|.++..+|++++|+..|+++
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34455566 4555557777788889999999996 999999999999999999999999999999999999999999999
Q ss_pred HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442 90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y 169 (297)
+.++|++. ..++.+|.++..+|++++|+..|+++|+++ |++..+|+++|.+|
T Consensus 193 l~ldP~~~--~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--------------------------P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 193 LNQDAKNY--HAWQHRQWVIQEFKLWDNELQYVDQLLKED--------------------------VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHCTTCH--HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHH
T ss_pred HHhCccCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHH
Confidence 99999854 455668999999999999999999999985 46778999999999
Q ss_pred HH-CCChHHH-----HHHHHHHHHhCCCcHH-HhHHHHHHHHcC--CHHHHHHHHHHHHhc
Q 022442 170 MQ-KTNFMAA-----EVVYQKAQMIDPDANK-ACNLGLCLIKRT--RYNEARSVLEDVLYG 221 (297)
Q Consensus 170 ~~-~g~~~eA-----~~~y~~Al~~~P~~~~-~~nLg~~l~~~g--~~~eA~~~~~~al~~ 221 (297)
.. .|.+++| +.+|++|+.++|++.. |+++|.+|..+| ++++|+..++++ ..
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~ 304 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP 304 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc
Confidence 99 5665888 5999999999999998 999999999999 699999999987 54
No 12
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=1.1e-20 Score=161.19 Aligned_cols=168 Identities=14% Similarity=0.116 Sum_probs=115.1
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
|....++...+.++...|++++|+..|++++..+|....++..+|.++..+|++++|+..+++++..+|.+. .....+
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ 131 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG--DLFYML 131 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH--HHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 434444555555555556666666666666666666556666666666666666666666666666555432 233345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
|.+|...|++++|+..++++++. .|+++.++.++|.+|...|++++|+.+|+++
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVEL--------------------------NENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55556666666666666665554 3456678888999999999999999999999
Q ss_pred HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+..+|++.. +.++|.++..+|++++|+..+++++..
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999998887 888899999999999999999988886
No 13
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=2e-21 Score=165.13 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHH----------------HHHHHHHCCChHHHHHHHHHHHhhC
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKD----------------MAVVMKQLDRSEEAIEAIKSFRGLC 93 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----------------Lg~~l~~~g~~~eAi~~~~~al~~~ 93 (297)
......+..++..|++++|+.+|++++..+|+++.+++. +|.++..+|++++|+..|+++++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 345666777889999999999999999999999999999 9999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442 94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g 173 (297)
|++. .....+|.+|...|++++|+..|++++++. |+++.+++++|.+|..+|
T Consensus 85 p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 85 PNNV--DCLEACAEMQVCRGQEKDALRMYEKILQLE--------------------------ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp TTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHHh
Confidence 9854 456668999999999999999999999985 467889999999997775
Q ss_pred C--hHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 174 N--FMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 ~--~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+ ...++..|++++...|....++++|.++..+|++++|+..|++++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4 56778889888754443334788999999999999999999999997
No 14
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.2e-20 Score=164.63 Aligned_cols=187 Identities=17% Similarity=0.085 Sum_probs=154.7
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESL 101 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l 101 (297)
|.....++..+..++..|++++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|++++...|++. ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4455578888999999999999999999999999998 99999999999999999999999999999999632 2345
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442 102 DNVLIDLYKK--------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 102 ~~~L~~ly~~--------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g 173 (297)
...+|.+|.. .|++++|+..|+++++..|...... .. . .....+.+..+..++++|.+|..+|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----~a--~--~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-----DA--T--QKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH-----HH--H--HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH-----HH--H--HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6678999999 9999999999999999977432110 00 0 0001111223456799999999999
Q ss_pred ChHHHHHHHHHHHHhCCCc---HH-HhHHHHHHHHc----------CCHHHHHHHHHHHHhc
Q 022442 174 NFMAAEVVYQKAQMIDPDA---NK-ACNLGLCLIKR----------TRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~---~~-~~nLg~~l~~~----------g~~~eA~~~~~~al~~ 221 (297)
++++|+..|+++++..|++ +. ++++|.+|..+ |++++|+..|++++..
T Consensus 163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999999999999999984 45 88999999977 9999999999999997
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1.1e-19 Score=164.61 Aligned_cols=190 Identities=15% Similarity=0.098 Sum_probs=163.5
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
.+++..+..+...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+..|++++.++|++. .....+|.+|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHH
Confidence 45788889999999999999999999999999999999999999999999999999999999999853 4566689999
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcC----------------cchhHHhhhhh------hHH--HhcCCC--cHHHHH
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNG----------------KPTKTARSHGK------KFQ--VSVRQE--TSRLLG 163 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~----------------~~~~~~~~~~~------~~~--~~l~p~--~~~~l~ 163 (297)
...|++++|+..|++++++.|....... ...... ..++ .+. +.+.|+ .+.++.
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 9999999999999999999875432211 111111 1111 111 577888 899999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
++|.+|...|++++|+.+|++++.++|+++. +.++|.++...|++++|+..|++++...
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998 9999999999999999999999999873
No 16
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=4.4e-21 Score=183.14 Aligned_cols=167 Identities=16% Similarity=0.067 Sum_probs=151.0
Q ss_pred CCCCcHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDP-EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV 104 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~ 104 (297)
|.....+...+.++...|++ ++|+.+|+++++.+|+++.++..+|.+|..+|++++|+..|++++.++|+ . .....
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~ 175 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K--VSLQN 175 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--HHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--HHHHH
Confidence 33444677778888889999 99999999999999999999999999999999999999999999999998 2 45566
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC---
Q 022442 105 LIDLYKKC---------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--- 172 (297)
Q Consensus 105 L~~ly~~~---------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~--- 172 (297)
+|.+|... |++++|+..|++++++. |+++.++.++|.+|..+
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------------------------VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHHHHh
Confidence 89999999 99999999999999885 45677999999999999
Q ss_pred -----CChHHHHHHHHHHHHhCC---CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 173 -----TNFMAAEVVYQKAQMIDP---DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 173 -----g~~~eA~~~y~~Al~~~P---~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|++++|+.+|++|++++| +++. ++++|.+|..+|++++|+..|++++..
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999 8888 999999999999999999999999987
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=167.66 Aligned_cols=208 Identities=12% Similarity=-0.006 Sum_probs=148.9
Q ss_pred ccchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-ChHHHHHHHHHH
Q 022442 12 SSKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSF 89 (297)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g-~~~eAi~~~~~a 89 (297)
.......| ..+...|.....+...+.++...|++++|+.+++++++.+|+++.++..+|.++...| ++++|+..|+++
T Consensus 38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 117 (330)
T 3hym_B 38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117 (330)
T ss_dssp HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33444555 3444456666666666677777888888888888888888888888888888888888 888888888888
Q ss_pred HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCcHH
Q 022442 90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSR 160 (297)
Q Consensus 90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~ 160 (297)
+..+|.+. .....+|.+|...|++++|+..|++++++.|... .+.. ........+ ..+. +.+.|+++.
T Consensus 118 ~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 118 TTLEKTYG--PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY-IGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp HTTCTTCT--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHhCCccH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 88888743 3445578888888888888888888888876421 1110 000000001 1111 466788888
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC---------CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMID---------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~---------P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
++.++|.+|..+|++++|+.+|++++++. |.... +.++|.++..+|++++|+..+++++...
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888876 55555 7788888888888888888888888763
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=3e-20 Score=156.09 Aligned_cols=170 Identities=11% Similarity=0.018 Sum_probs=152.1
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
|.....+...+..+...|++++|+.+|+++++.+|+.+.++..+|.++...|++++|+..+++++...|.+. .....+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHH
Confidence 334456777888899999999999999999999999999999999999999999999999999999999753 455668
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 106 IDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 106 ~~ly~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
|.+|... |++++|+..++++++ .|. .|+...++.++|.+|...|++++|+.+|++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPT-----------------------YPTPYIANLNKGICSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STT-----------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcC-----------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999 999999999999998 220 234567899999999999999999999999
Q ss_pred HHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 185 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 185 Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++.+|++.. +.++|.++...|++++|+..+++++..
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999998 899999999999999999999999986
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.9e-20 Score=160.64 Aligned_cols=190 Identities=17% Similarity=0.081 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch--H---HHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--Q---ESLDNVL 105 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~--~---~~l~~~L 105 (297)
++...+..+...|++++|+.+|++++..+ .++.++..+|.++..+|++++|+..+++++.+.|+.. . ......+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 45566667777777777777777777777 6677777777777777777777777777777766420 0 2345557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------------------------hchhhhhcCcchhHHhhhh------hhHH--
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRL--------------------------IYQGEAFNGKPTKTARSHG------KKFQ-- 151 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~~------~~~~-- 151 (297)
|.+|...|++++|+..|++++++ .|................+ ..+.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77777777777777777777773 2221100000000000000 0111
Q ss_pred HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 152 ~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+.|+++.++.++|.+|..+|++++|+.+|+++++++|+++. +.++|.++..+|++++|+..|++++..
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3556777788888888888888888888888888888888887 788888888888888888888888876
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=2.9e-20 Score=166.53 Aligned_cols=184 Identities=14% Similarity=0.030 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINA--GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
++..+..++...++.++|+..+++.+.. +|+++.+++.+|.++.+.|++++|++.+++ |++. .....+|.+
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~--~~~~~l~~~ 139 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL--ECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH--HHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH--HHHHHHHHH
Confidence 3444455666778899999999998875 599999999999999999999999999887 6532 456668899
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhc-Cc-chhHHh---hhhh---hHH--HhcCCCcHHHHHHHHHHHHHCCChHHH
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFN-GK-PTKTAR---SHGK---KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAA 178 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~-~~-~~~~~~---~~~~---~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA 178 (297)
|.++|++++|+..|+++++..|...... .. ...... .... .+. +...|+++.+++++|.+|.++|++++|
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999876432111 00 000100 0111 121 466899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH-HHHHHHHHHhc
Q 022442 179 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE-ARSVLEDVLYG 221 (297)
Q Consensus 179 ~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e-A~~~~~~al~~ 221 (297)
+..|+++++++|+++. +.|+|.++..+|++++ +..++++++..
T Consensus 220 ~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 220 EGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999998 9999999999999987 56888999987
No 21
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.5e-20 Score=158.28 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=128.6
Q ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh--------
Q 022442 61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-------- 132 (297)
Q Consensus 61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~-------- 132 (297)
..++++..+|.++...|++++|+..|++++..+ .+. .....+|.+|...|++++|+..+++++++.|..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI--TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 456789999999999999999999999999998 533 456668999999999999999999999997743
Q ss_pred hhhc---------CcchhHHhhhhhhHH------------------------HhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 133 EAFN---------GKPTKTARSHGKKFQ------------------------VSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 133 ~~~~---------~~~~~~~~~~~~~~~------------------------~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
..+. +.............. +.+.|+.+.++.++|.+|...|++++|+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 1111 110000000000000 2277888899999999999999999999
Q ss_pred HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+|+++++++|+++. +.++|.++..+|++++|+..+++++..
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999998 999999999999999999999999987
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.7e-20 Score=163.86 Aligned_cols=252 Identities=12% Similarity=0.044 Sum_probs=189.0
Q ss_pred hhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 16 EDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
...-..+...+.....+...+..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp -----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 34446666777777788888888889999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh---h---hHH--HhcCCCcHHHHHHH
Q 022442 96 QSQESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG---K---KFQ--VSVRQETSRLLGNL 165 (297)
Q Consensus 96 ~~~~~l~~~L~~ly~~~g-~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~---~---~~~--~~l~p~~~~~l~nL 165 (297)
++ .....+|.++...| ++++|+..|++++++.|... ++.. ........+ . .+. +.+.|++..++.++
T Consensus 89 ~~--~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 89 NP--VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA-YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp ST--HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred CH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 54 45566899999999 99999999999999987432 1110 000100111 1 111 46778889999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCCc---------
Q 022442 166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI--------PGCE--------- 227 (297)
Q Consensus 166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~--------~~~~--------- 227 (297)
|.+|...|++++|+.+|+++++.+|+++. +.++|.++..+|++++|+..+++++...+ +...
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999998 99999999999999999999999997521 1111
Q ss_pred --chhhHHHHHHHHHHHHhcC-CCCchhhhhcccc--hhHHHHHHHHH
Q 022442 228 --DGRTRKRAEELLLELESKQ-PPPDLSDLLGLNL--EDEFVNGLEEM 270 (297)
Q Consensus 228 --~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~~~--~d~~~~~~~~~ 270 (297)
....++.|...+....... ..+.+...+|..+ .+++.++....
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 2355667777777664433 3566677777766 24444444433
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=7e-20 Score=165.92 Aligned_cols=207 Identities=18% Similarity=0.131 Sum_probs=167.3
Q ss_pred cchhhhhhhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442 13 SKKEDLFHVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG 91 (297)
Q Consensus 13 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~ 91 (297)
.+....|..+.+ .|....++...+.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++.
T Consensus 81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555644444 4666668888899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcchHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHhhch--hh-hhcCcchhHHhhhh---h---
Q 022442 92 LCSKQSQESLDN--------------VLIDLYKKCGKVEEQIEMLKRKLRLIYQ--GE-AFNGKPTKTARSHG---K--- 148 (297)
Q Consensus 92 ~~P~~~~~~l~~--------------~L~~ly~~~g~~~eAi~~~~~al~~~p~--~~-~~~~~~~~~~~~~~---~--- 148 (297)
..|+........ .++.++ ..|++++|+..|++++++.|. .. .+. .........+ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~-~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQC-GLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHH-HHHHHHHHTTCHHHHHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHH-HHHHHHHHcCCHHHHHH
Confidence 999743211111 356666 899999999999999999876 22 111 0011111111 1
Q ss_pred hHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 149 KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 149 ~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+. +.+.|+++.++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.+|..+|++++|+..|++++..
T Consensus 239 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 111 5678999999999999999999999999999999999999998 999999999999999999999999986
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.4e-19 Score=162.05 Aligned_cols=257 Identities=15% Similarity=0.122 Sum_probs=163.7
Q ss_pred cchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442 13 SKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG 91 (297)
Q Consensus 13 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~ 91 (297)
.+..+.|. .+...|....++...+.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 34445553 34444666667777777777888888888888888888888888888888888888888888888888888
Q ss_pred hCC---cchHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhH
Q 022442 92 LCS---KQSQESLDNVL------------IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKF 150 (297)
Q Consensus 92 ~~P---~~~~~~l~~~L------------~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~ 150 (297)
..| ++. .....+ |.++...|++++|+..++++++..|................+ ..+
T Consensus 100 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 177 (359)
T 3ieg_A 100 SNPSEQEEK--EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177 (359)
T ss_dssp SCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcccChH--HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888 532 222223 677788888888888888888876643211100000000001 011
Q ss_pred H--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-Hh------------HHHHHHHHcCCHHHHHHHH
Q 022442 151 Q--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC------------NLGLCLIKRTRYNEARSVL 215 (297)
Q Consensus 151 ~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~------------nLg~~l~~~g~~~eA~~~~ 215 (297)
. +.+.|+++.++.++|.+|..+|++++|+..|+++++.+|++.. +. .+|.++...|++++|+..+
T Consensus 178 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp HHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 4567778888888888888888888888888888888887765 32 3477788888888888888
Q ss_pred HHHHhcCCCCCc--------------chhhHHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHH
Q 022442 216 EDVLYGRIPGCE--------------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMV 271 (297)
Q Consensus 216 ~~al~~~~~~~~--------------~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l 271 (297)
++++...+..+. ....++.|...+.......| .+.+...+|..+ ++++.+.|+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888776322211 12334455555555543333 455555566655 244444444444
No 25
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=1.1e-21 Score=158.53 Aligned_cols=145 Identities=12% Similarity=0.011 Sum_probs=126.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK 114 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~ 114 (297)
+|.++...|++++|+..+++++..+|..+.+++.+|.+|.++|++++|+..|+++++++|+++ ..+..+|.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCc
Confidence 455566678999999999999999999999999999999999999999999999999999854 466678999999999
Q ss_pred HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH-HHHHHHhCCCcH
Q 022442 115 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV-YQKAQMIDPDAN 193 (297)
Q Consensus 115 ~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~-y~~Al~~~P~~~ 193 (297)
+++|+..|++++++. |+++.++.++|.+|..+|++++|... +++|++++|+++
T Consensus 81 ~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 81 TDKAVECYRRSVELN--------------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 999999999999984 46778999999999999999888776 489999999999
Q ss_pred H-HhHHHHHHHHcCC
Q 022442 194 K-ACNLGLCLIKRTR 207 (297)
Q Consensus 194 ~-~~nLg~~l~~~g~ 207 (297)
. +..++.++..+|+
T Consensus 135 ~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 135 AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 8 6677888888875
No 26
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=3.5e-20 Score=172.65 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=57.5
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
|.....+...+..+...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|++. .....+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT--AARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH--HHHHHH
Confidence 333334445555555556666666666666655555555566666666666666666666666655555532 233345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
|.+|..+|++++|+..|++++++.|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5555556666666666666555544
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=1.5e-20 Score=188.19 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=127.8
Q ss_pred cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442 58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~ 137 (297)
..|++++++++||.++.++|++++|++.|+++++++|+++ ..++.||.+|.++|++++|+..|+++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-------- 73 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRIS-------- 73 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 4689999999999999999999999999999999999854 466679999999999999999999999984
Q ss_pred cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHH
Q 022442 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE 216 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~ 216 (297)
|+++.++++||.+|.++|++++|+.+|++|++++|++.. +.+||.+|..+|++++|+..|+
T Consensus 74 ------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 74 ------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467889999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHhcC
Q 022442 217 DVLYGR 222 (297)
Q Consensus 217 ~al~~~ 222 (297)
++++..
T Consensus 136 ~Al~l~ 141 (723)
T 4gyw_A 136 TALKLK 141 (723)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999983
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=1.4e-19 Score=155.87 Aligned_cols=166 Identities=20% Similarity=0.171 Sum_probs=145.0
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
..+...+..+...|++++|+.+|++++..+|..+.++..+|.++...|++++|+..+++++...|.+. .....+|.+|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--RVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHH
Confidence 34667778888999999999999999999999999999999999999999999999999999999743 4566689999
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
...|++++|+..|+++++ .+ ..|..+.++.++|.+|..+|++++|+.+|+++++.+
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DT-----------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CT-----------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHh-Cc-----------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999988 11 023455678889999999999999999999999999
Q ss_pred CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 190 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 190 P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|++.. +..+|.++..+|++++|+..+++++..
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 98887 888899999999999999999988876
No 29
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=2.8e-19 Score=153.91 Aligned_cols=182 Identities=13% Similarity=0.027 Sum_probs=160.7
Q ss_pred ccchhhhhhhh-hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 12 SSKKEDLFHVI-HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
..+..+.|... ...|....++...+.++...|++++|+.+|+++++.+|....++..+|.++...|++++|+..+++++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455556443 34465666788888899999999999999999999999999999999999999999999999999999
Q ss_pred h--hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442 91 G--LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA 168 (297)
Q Consensus 91 ~--~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~ 168 (297)
. ..|.. ......+|.+|...|++++|+..|+++++..| +++.++..+|.+
T Consensus 133 ~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~ 184 (252)
T 2ho1_A 133 QDTLYPER--SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--------------------------NQPSVALEMADL 184 (252)
T ss_dssp TCTTCTTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------------------------CCHHHHHHHHHH
T ss_pred hCccCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--------------------------ccHHHHHHHHHH
Confidence 9 66763 34566689999999999999999999998743 456789999999
Q ss_pred HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|..+|++++|+.+|+++++..|++.. +..++.++...|++++|..++++++..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 889999999999999999999999987
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=1.5e-19 Score=160.38 Aligned_cols=192 Identities=16% Similarity=0.132 Sum_probs=161.2
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
...++..+..+...|++++|+.+|++++..+|++..++..+|.++...|++++|+..+++++...|++. .....+|.+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHHHHHHHH
Confidence 345777888888999999999999999999999999999999999999999999999999999999753 455668999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhcCcc--------------hh-HHhhhh---h---hHH--HhcCCCcHHHHHHH
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP--------------TK-TARSHG---K---KFQ--VSVRQETSRLLGNL 165 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~--------------~~-~~~~~~---~---~~~--~~l~p~~~~~l~nL 165 (297)
|...|++++|+..|+++++..|......... .. .....+ . .+. +.+.|+++.++..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999877432211000 00 000011 1 111 46789999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
|.+|...|++++|+.+|+++++.+|+++. +.++|.++...|++++|+..+++++...
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998 9999999999999999999999999873
No 31
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=2.3e-19 Score=160.70 Aligned_cols=188 Identities=15% Similarity=0.130 Sum_probs=129.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
....+.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|.+. .....+|.+|..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT--EAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Confidence 334455566667777777777777777777777777777777777777777777777777766532 344446667777
Q ss_pred cCCHHHHHHHHHHHHHhhchhhh-hc--Ccc---------hhHHhhhh------hhHH--HhcCCCcH----HHHHHHHH
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEA-FN--GKP---------TKTARSHG------KKFQ--VSVRQETS----RLLGNLAW 167 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~-~~--~~~---------~~~~~~~~------~~~~--~~l~p~~~----~~l~nLg~ 167 (297)
.|++++|+..|+++++..|.... +. ... .......+ ..+. +.+.|+++ .++.++|.
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 77777777777777766553211 00 000 00000000 0011 34456655 35678999
Q ss_pred HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|..+|++++|+.+|+++++++|+++. +.++|.++...|++++|+..|++++..
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999998 999999999999999999999999997
No 32
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.85 E-value=7.3e-21 Score=157.01 Aligned_cols=167 Identities=14% Similarity=0.059 Sum_probs=141.7
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442 26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL 105 (297)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L 105 (297)
|......+..+..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++...| ++. +...+
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~--~~~~~ 79 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS--YKSLI 79 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH--HHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH--HHHHH
Confidence 444556778888889999999999999999999999999999999999999999999999999999998 432 33333
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 106 IDL-YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 106 ~~l-y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
+.+ +...+...+|+..|++++++. |+++.++.++|.+|..+|++++|+.+|++
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~--------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAAN--------------------------PDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 433 223344556899999999874 46778999999999999999999999999
Q ss_pred HHHhCCCc--HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 185 AQMIDPDA--NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 185 Al~~~P~~--~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++++|+. .. +.+||.++..+|+.++|+..|++++..
T Consensus 134 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 134 ILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 99999985 45 889999999999999999999999863
No 33
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.85 E-value=1.8e-20 Score=167.26 Aligned_cols=174 Identities=14% Similarity=0.052 Sum_probs=154.5
Q ss_pred hhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH
Q 022442 20 HVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 98 (297)
Q Consensus 20 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~ 98 (297)
..+.. +|....+....+..++..|++++|+..|++++..+|+++.++..+|.++.++|++++|+..+++++..+|+.
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-- 184 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-- 184 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--
Confidence 44433 366666788888889999999999999999999999999999999999999999999999999999999963
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHH
Q 022442 99 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 178 (297)
Q Consensus 99 ~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA 178 (297)
......++..+...|+.++|+..|+++++.. |+++.++++||.+|...|++++|
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------------------------P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------------------------PEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------------------------CccHHHHHHHHHHHHHcccHHHH
Confidence 2344445666788999999999999999884 46788999999999999999999
Q ss_pred HHHHHHHHHhCCCc--HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 179 EVVYQKAQMIDPDA--NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 179 ~~~y~~Al~~~P~~--~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+..|+++++.+|++ .. +.+|+.++..+|+.++|...|++++..
T Consensus 239 ~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 239 LELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999998 66 889999999999999999999998863
No 34
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=1.2e-19 Score=147.46 Aligned_cols=163 Identities=12% Similarity=0.031 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
.+...+..+...|++++|+..|++++..+|..+.++..+|.++...|++++|+..+++++...|.+. .....+|.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999999999999999743 45566899999
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
..|++++|+..++++++..| +++.++.++|.+|...|++++|+.+|+++++..|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP--------------------------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHhcCc--------------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 99999999999999998743 4567899999999999999999999999999999
Q ss_pred CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++. +.++|.++..+|++++|...+++++..
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9998 999999999999999999999999986
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=2.1e-19 Score=167.39 Aligned_cols=262 Identities=15% Similarity=0.112 Sum_probs=192.8
Q ss_pred cccchhhhhhhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 11 FSSKKEDLFHVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF 89 (297)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a 89 (297)
........|..+.+ .|....++...+.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++
T Consensus 41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445566654444 56666678888999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcch---HHH--H--------HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhH
Q 022442 90 RGLCSKQS---QES--L--------DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKF 150 (297)
Q Consensus 90 l~~~P~~~---~~~--l--------~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~ 150 (297)
+..+|++. ... + ...+|.++...|++++|+..|++++++.|................+ ..+
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred HhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999743 111 0 1224677999999999999999999987743211100000000011 111
Q ss_pred H--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHH------------HHHHHHcCCHHHHHHHH
Q 022442 151 Q--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL------------GLCLIKRTRYNEARSVL 215 (297)
Q Consensus 151 ~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nL------------g~~l~~~g~~~eA~~~~ 215 (297)
. +.+.|+++.++.++|.+|...|++++|+.+|++++.++|++.. +..+ |.++...|++++|+..|
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 4667899999999999999999999999999999999999987 6555 99999999999999999
Q ss_pred HHHHhcCCCCCc--------------chhhHHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHh
Q 022442 216 EDVLYGRIPGCE--------------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVR 272 (297)
Q Consensus 216 ~~al~~~~~~~~--------------~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~ 272 (297)
++++...+.++. ....++.|...+.......| .+.+...+|..+ +++..+.|+..+.
T Consensus 281 ~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999987332211 13445566666666543333 455555555555 3566666665554
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=5.3e-20 Score=156.89 Aligned_cols=163 Identities=18% Similarity=0.120 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
++...+..+...|++++|+.+|+++++.+|....++..+|.++...|++++|+..+++++...|.+. .....+|.+|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHHHHHHHHHH
Confidence 4666778888999999999999999999999999999999999999999999999999999999743 45666899999
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
..|++++|+..|+++++..| +++.++.++|.+|..+|++++|+.+|++++++.|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGM--------------------------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTC--------------------------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HhccHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999999999999998754 4567899999999999999999999999999999
Q ss_pred CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++.. +.++|.++...|++++|+..+++++..
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998 999999999999999999999999987
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.84 E-value=9.2e-19 Score=146.97 Aligned_cols=181 Identities=11% Similarity=-0.040 Sum_probs=158.4
Q ss_pred cchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CChHHHHHHHHHHH
Q 022442 13 SKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-DRSEEAIEAIKSFR 90 (297)
Q Consensus 13 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~-g~~~eAi~~~~~al 90 (297)
.+....|. .+...|....++...+.++...|++++|+.+|++++..+|+...++..+|.++... |++++|+..+++++
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445563 44455666667888889999999999999999999999999999999999999999 99999999999999
Q ss_pred h--hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442 91 G--LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA 168 (297)
Q Consensus 91 ~--~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~ 168 (297)
. ..|.. ......+|.+|...|++++|+..++++++..| +++.++.++|.+
T Consensus 105 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~ 156 (225)
T 2vq2_A 105 ADPTYPTP--YIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--------------------------QFPPAFKELART 156 (225)
T ss_dssp TSTTCSCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHH
T ss_pred cCcCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------CCchHHHHHHHH
Confidence 9 44542 34566789999999999999999999998743 456789999999
Q ss_pred HHHCCChHHHHHHHHHHHHhCC-CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDP-DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P-~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|..+|++++|+.+|+++++.+| ++.. +..++.++...|++++|..+++.++..
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999 8888 778889999999999999999999876
No 38
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.83 E-value=4.4e-19 Score=171.22 Aligned_cols=207 Identities=13% Similarity=0.054 Sum_probs=136.9
Q ss_pred ccchhhhhhhhh-cCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 12 SSKKEDLFHVIH-KVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
..+..+.|..+. ..|....++...+.++...|++++|+..+++++..+|++..++..+|.+|.+.|++++|+..|++++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344455564433 3355555666667777777777777777777777777777777777777777777777777777777
Q ss_pred hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCcHHH
Q 022442 91 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRL 161 (297)
Q Consensus 91 ~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~ 161 (297)
...|++. ..++.++.+|.+.|++++|+..|+++++..|... .+.. ........+ ..+. +.+.|+++.+
T Consensus 401 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 477 (597)
T 2xpi_A 401 TMDPQFG--PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF-LGMQHMQLGNILLANEYLQSSYALFQYDPLL 477 (597)
T ss_dssp HHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred HhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 7777632 3445577777777777777777777777765432 1110 000000001 1111 3556777777
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh------CCCc-HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMI------DPDA-NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~------~P~~-~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.++|.+|...|++++|+.+|++++++ +|++ .. +.++|.+|...|++++|+..+++++..
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 777777777777777777777777777 5654 44 677777777777777777777777765
No 39
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.5e-19 Score=160.45 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=163.9
Q ss_pred chhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 14 KKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 14 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
+....|. .+...|....++...+.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..
T Consensus 39 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 39 EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445553 344456666678888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhHH
Q 022442 93 CSKQSQESLDNVL--------------ID-LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ 151 (297)
Q Consensus 93 ~P~~~~~~l~~~L--------------~~-ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~ 151 (297)
.|.... ....+ +. ++...|++++|+..++++++..|................+ ..+.
T Consensus 119 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 196 (327)
T 3cv0_A 119 QPQYEQ--LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR 196 (327)
T ss_dssp STTTTT--C--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccHH--HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 997422 22222 44 5788999999999999999987743211100000000011 1111
Q ss_pred --HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 152 --VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 152 --~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+.|+++.++.++|.+|...|++++|+.+|+++++++|++.. +.++|.++..+|++++|+..+++++..
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999998 999999999999999999999999987
No 40
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=1e-19 Score=142.90 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=108.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh
Q 022442 54 KAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE 133 (297)
Q Consensus 54 ~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~ 133 (297)
++..++|+.++++.++|..+.++|++++|+..|+++++++|.++ .++..+|.+|..+|++++|+..|+++|++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---- 77 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRLD---- 77 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHhh----
Confidence 34568999999999999999999999999999999999999854 456668999999999999999999999984
Q ss_pred hhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442 134 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 202 (297)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l 202 (297)
|+++.++.++|.+|..+|++++|+..|+++++++|++.. +.+|+.|+
T Consensus 78 ----------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 78 ----------------------SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ----------------------hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 457789999999999999999999999999999999998 88898875
No 41
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=6.1e-20 Score=182.77 Aligned_cols=153 Identities=12% Similarity=-0.074 Sum_probs=132.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 40 LVQKDPEAAIVLFWKAI--------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
+..|++++|+..|++++ +.+|++.+++..+|.++.++|++++|++.|+++++.+|+++ ..++.+|.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW--RLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH--HHHHHHHHHHHH
Confidence 67899999999999999 89999999999999999999999999999999999999854 456668999999
Q ss_pred cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442 112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~ 191 (297)
.|++++|+..|+++++++| +++.++.++|.+|.++|++++ +.+|++|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P--------------------------~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP--------------------------GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST--------------------------TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhCC--------------------------CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 9999999999999999865 455677788888888888888 8888888888888
Q ss_pred cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 192 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 192 ~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.. +++||.+|..+|++++|+..|++++..
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 877 778888888888888888888887776
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.83 E-value=5.2e-20 Score=175.69 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=158.3
Q ss_pred cchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---------CChHHH
Q 022442 13 SKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---------DRSEEA 82 (297)
Q Consensus 13 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~---------g~~~eA 82 (297)
....+.|. .+..-|....++..++.++...|++++|+.+|+++++.+|+ ..++.++|.++..+ |++++|
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A 198 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHH
Confidence 44556664 44555766778999999999999999999999999999999 69999999999999 999999
Q ss_pred HHHHHHHHhhCCcchHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhc
Q 022442 83 IEAIKSFRGLCSKQSQESLDNVLIDLYKKC--------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV 154 (297)
Q Consensus 83 i~~~~~al~~~P~~~~~~l~~~L~~ly~~~--------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 154 (297)
+..|++++.++|++. ..+..+|.+|... |++++|+..|++++++.|.
T Consensus 199 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------------------- 253 (474)
T 4abn_A 199 VRQAKLAVQMDVLDG--RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK----------------------- 253 (474)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----------------------
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----------------------
Confidence 999999999999854 4556689999999 9999999999999998541
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 155 ~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
.++++.++.++|.+|..+|++++|+.+|+++++++|++.. +.+++.++..+|++++|+..+.++
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0146789999999999999999999999999999999998 999999999999999999876543
No 43
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.83 E-value=9.6e-19 Score=168.83 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=203.9
Q ss_pred ccccccchhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 8 KKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK 87 (297)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~ 87 (297)
+.+........|..+.+.|.+...+...+..+...|++++|+.+|++++..+|++..++..++.++.+.|++++|+..++
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44455556667766666666666788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCc
Q 022442 88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQET 158 (297)
Q Consensus 88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~ 158 (297)
+++...|++. ...+.+|.+|.+.|++++|+.+|++++++.|... .++. ........+ ..+. +.+.|++
T Consensus 364 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 364 DLVDRHPEKA--VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG-FAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp HHHHHCTTSH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHhhCcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999743 4566689999999999999999999999877532 2221 001111111 1122 4678889
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCCc-------
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI---PGCE------- 227 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~---~~~~------- 227 (297)
..++.++|.+|...|++++|+.+|+++++++|+++. +.++|.+|...|++++|+..|++++...+ ..+.
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 999999999999999999999999999999999998 99999999999999999999999987521 1121
Q ss_pred -------chhhHHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHhh
Q 022442 228 -------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVRV 273 (297)
Q Consensus 228 -------~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~~ 273 (297)
...+++.|...+..+....| ++.+...++..+ +++..+.|+..+..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 24556778888777654444 455555555554 46777777776643
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.83 E-value=7.1e-19 Score=152.84 Aligned_cols=165 Identities=16% Similarity=0.083 Sum_probs=130.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch--HHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--QESLDNVLID 107 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~--~~~l~~~L~~ 107 (297)
......+..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++. .|.+. ....+..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 34566677788899999999999999999999999999999999999999999999999998 44321 1223566899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
+|...|++++|+..|++++++.| +++.++.++|.+|..+|++++|+.+|+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT--------------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHcccHHHHHHHHHHHHhcCc--------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999998854 3445677777777777777777777777777
Q ss_pred hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 188 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 188 ~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++|+++. +.++|......+++++|+..|++++..
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 137 PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777776 777773334445777777777777776
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=8.9e-19 Score=166.51 Aligned_cols=230 Identities=14% Similarity=0.092 Sum_probs=172.5
Q ss_pred chhhhhhhhhcC-CCCCc-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHH
Q 022442 14 KKEDLFHVIHKV-PAGDG-------PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA 85 (297)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~ 85 (297)
+....|..+.+. |.... ++...+.++...|++++|+..|++++..+|+ +.++..+|.++...|++++|+..
T Consensus 220 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 220 KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHH
Confidence 334455444444 43322 3666677888999999999999999999999 89999999999999999999999
Q ss_pred HHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH
Q 022442 86 IKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL 165 (297)
Q Consensus 86 ~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL 165 (297)
|++++..+|+++ .....+|.+|...|++++|+..|++++++.| +++.++.++
T Consensus 299 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~l 350 (537)
T 3fp2_A 299 FQKAVDLNPEYP--PTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--------------------------ENVYPYIQL 350 (537)
T ss_dssp HHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCSHHHHHH
T ss_pred HHHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------------------------CCHHHHHHH
Confidence 999999999853 4566689999999999999999999999854 344577888
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---c-------------
Q 022442 166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE---D------------- 228 (297)
Q Consensus 166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~---~------------- 228 (297)
|.+|..+|++++|+.+|+++++.+|+++. +.++|.++...|++++|+..|++++...+..+. .
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888887 788888888888888888888888765221110 0
Q ss_pred h----------hhHHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHh
Q 022442 229 G----------RTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVR 272 (297)
Q Consensus 229 ~----------~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~ 272 (297)
. ..++.|...+.......| .+.+...+|..+ ++++.+.|+..+.
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 556666666666544333 344455555544 2555555555543
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=4.4e-19 Score=146.19 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=141.2
Q ss_pred ccccccchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 8 KKIFSSKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI 86 (297)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~ 86 (297)
++|.-.+..+.|. .+..-|....++...+.++...|++++|+..+++++..+|+.+.++..+|.++...+++++|+..+
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 96 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDAL 96 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445556667774 455557777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442 87 KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA 166 (297)
Q Consensus 87 ~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg 166 (297)
++++...|.+. .....+|.+|..+|++++|+..|++++++. |+++.++.++|
T Consensus 97 ~~a~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--------------------------p~~~~~~~~lg 148 (184)
T 3vtx_A 97 QRAIALNTVYA--DAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------------------------PGFIRAYQSIG 148 (184)
T ss_dssp HHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHH
T ss_pred HHHHHhCccch--HHHHHHHHHHHHhCCchhHHHHHHHHHHhc--------------------------chhhhHHHHHH
Confidence 99999999853 455668999999999999999999999985 45778999999
Q ss_pred HHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 167 WAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
.+|..+|++++|+.+|++|++++|+++.
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999998764
No 47
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=9.5e-19 Score=150.02 Aligned_cols=186 Identities=10% Similarity=-0.037 Sum_probs=148.4
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHH
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNV 104 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~ 104 (297)
..+++..+..++..|++++|+..|++++...|+. ..+++.+|.++..+|++++|+..|+++++.+|++... .....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3457777888899999999999999999988875 5789999999999999999999999999999975321 23445
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442 105 LIDLYKK------------------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA 166 (297)
Q Consensus 105 L~~ly~~------------------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg 166 (297)
+|.+|.. .|++++|+..|+++++..|...........+ ..+..........+|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l---------~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL---------VFLKDRLAKYEYSVA 154 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 7777765 6899999999999999987532110000000 001111234557899
Q ss_pred HHHHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442 167 WAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGRI 223 (297)
Q Consensus 167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~ 223 (297)
.+|..+|++++|+..|+++++..|+++ . +..+|.+|.++|++++|+..++++....+
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 999999999999999999999999986 4 78999999999999999999999988743
No 48
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=5.3e-20 Score=148.59 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=113.7
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh
Q 022442 68 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 147 (297)
Q Consensus 68 ~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (297)
.||.++...|++++|++.+++++...|+.+ ..+..+|.+|.+.|++++|+..|+++++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------ 61 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------ 61 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------
Confidence 489999999999999999999999988742 345568999999999999999999999984
Q ss_pred hhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHH-HHHHHhcCCCC
Q 022442 148 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV-LEDVLYGRIPG 225 (297)
Q Consensus 148 ~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~-~~~al~~~~~~ 225 (297)
|+++.++.++|.+|..+|++++|+.+|+++++++|+++. +++||.+|..+|++++|... +++++.. +
T Consensus 62 --------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~ 130 (150)
T 4ga2_A 62 --------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---F 130 (150)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---S
T ss_pred --------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---C
Confidence 467889999999999999999999999999999999998 99999999999999887766 5999998 4
Q ss_pred Ccchh
Q 022442 226 CEDGR 230 (297)
Q Consensus 226 ~~~~~ 230 (297)
|.++.
T Consensus 131 P~~~~ 135 (150)
T 4ga2_A 131 PGSPA 135 (150)
T ss_dssp TTCHH
T ss_pred cCCHH
Confidence 55444
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=8e-19 Score=152.51 Aligned_cols=209 Identities=9% Similarity=-0.026 Sum_probs=157.1
Q ss_pred cccchhhhhhh-hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCh-HHHHHHHHHHHHHCCChHHHHHHH
Q 022442 11 FSSKKEDLFHV-IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAG--DRV-DSALKDMAVVMKQLDRSEEAIEAI 86 (297)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~-~~a~~~Lg~~l~~~g~~~eAi~~~ 86 (297)
.-.+....|.. +...|....++...+.++...|++++|+..|++++... |.. ..++..+|.++..+|++++|+..|
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 97 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY 97 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33445566644 44456667789999999999999999999999999933 222 556999999999999999999999
Q ss_pred HHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch-hHH--hhhh---hhHH--HhcCCCc
Q 022442 87 KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT-KTA--RSHG---KKFQ--VSVRQET 158 (297)
Q Consensus 87 ~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~-~~~--~~~~---~~~~--~~l~p~~ 158 (297)
++++..+|.+. .....+|.+|...|++++|+..|++++++.|.......... ... .... ..+. +.+.|++
T Consensus 98 ~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 98 QAAVDRDTTRL--DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999854 45666899999999999999999999998764321100000 000 0000 1111 5677888
Q ss_pred HHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhC---CCc-----HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 159 SRLLGNLAWAYMQKTN---FMAAEVVYQKAQMID---PDA-----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~---~~eA~~~y~~Al~~~---P~~-----~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..++.++|.++..+|+ +++|+..|++++++. |+. .. +..||.+|..+|++++|+.+|++++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8888888888888888 888888888888876 552 13 667888888888888888888888887
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=7.2e-19 Score=150.00 Aligned_cols=168 Identities=11% Similarity=0.001 Sum_probs=140.4
Q ss_pred ccccchhhhhhhhhcC-C-CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 10 IFSSKKEDLFHVIHKV-P-AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK 87 (297)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~ 87 (297)
+.-.+..+.|....++ | ++..+++..+.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 100 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLT 100 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3344556667544444 5 5556777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCcchHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC--cHH
Q 022442 88 SFRGLCSKQSQE-----SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE--TSR 160 (297)
Q Consensus 88 ~al~~~P~~~~~-----~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~--~~~ 160 (297)
+++.+.|++... ..+..+|.++...|++++|+..|++++++.| + ++.
T Consensus 101 ~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------~~~~~~ 154 (228)
T 4i17_A 101 EGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS--------------------------KKWKTD 154 (228)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC--------------------------HHHHHH
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC--------------------------CcccHH
Confidence 999999985422 3466789999999999999999999999865 3 345
Q ss_pred HHHHHHHHHHHCCCh---------------------------HHHHHHHHHHHHhCCCcHH-HhHHHHHHH
Q 022442 161 LLGNLAWAYMQKTNF---------------------------MAAEVVYQKAQMIDPDANK-ACNLGLCLI 203 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~---------------------------~eA~~~y~~Al~~~P~~~~-~~nLg~~l~ 203 (297)
++.++|.+|..+|+. ++|+.+|+++++++|+++. ...|+.+..
T Consensus 155 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 155 ALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 677777777777777 9999999999999999998 667776643
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=6.1e-18 Score=146.70 Aligned_cols=205 Identities=8% Similarity=-0.078 Sum_probs=158.7
Q ss_pred cchhhhhhhhhcC-C----CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 13 SKKEDLFHVIHKV-P----AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK 87 (297)
Q Consensus 13 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~ 87 (297)
.+....|..+.+. + ....++...+.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444556554444 2 2233577778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc---CcchhHHhhhhh---hHH--HhcCCCcH
Q 022442 88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN---GKPTKTARSHGK---KFQ--VSVRQETS 159 (297)
Q Consensus 88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~---~~~~~~~~~~~~---~~~--~~l~p~~~ 159 (297)
+++.++|.+. .....+|.+|...|++++|+..|++++++.|...... ...... ..... .+. +...|++.
T Consensus 102 ~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 178 (275)
T 1xnf_A 102 SVLELDPTYN--YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-LDEKQAKEVLKQHFEKSDKEQ 178 (275)
T ss_dssp HHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHhcCcccc--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCcch
Confidence 9999999853 4566689999999999999999999999987543111 000000 00001 111 33445554
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc----HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~----~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+ .++.++...+++++|+..+++++...|+. .. +.++|.++..+|++++|+..|++++..
T Consensus 179 ~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 179 WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 444 47888888999999999999999888754 45 789999999999999999999999997
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=7.9e-19 Score=152.33 Aligned_cols=153 Identities=14% Similarity=0.015 Sum_probs=135.0
Q ss_pred HcCCHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442 41 VQKDPEAAIVLFWKAINA----GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 116 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~----~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~ 116 (297)
..|++++|+..|+++++. +|..+.++..+|.++...|++++|+..|++++..+|++. .....+|.+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHccCHH
Confidence 358899999999999997 456788999999999999999999999999999999853 45666899999999999
Q ss_pred HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-H
Q 022442 117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A 195 (297)
Q Consensus 117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~ 195 (297)
+|+..|++++++.| +++.++.++|.+|..+|++++|+.+|+++++++|++.. .
T Consensus 95 ~A~~~~~~al~~~~--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 95 AAYEAFDSVLELDP--------------------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHHHHHHHHHHHCT--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCc--------------------------cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999854 45678999999999999999999999999999999997 4
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
..++ ++...|++++|+..+++++...
T Consensus 149 ~~~~-~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 149 LWLY-LAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHH-HHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHH-HHHHhcCHHHHHHHHHHHHhcC
Confidence 4444 4467799999999999988763
No 53
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=2.7e-18 Score=153.19 Aligned_cols=171 Identities=13% Similarity=0.074 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--h--HHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGD------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S--QES 100 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~--~~~ 100 (297)
.|..++.++...|++++|+..|++++.+.+ ..+.++.++|.+|..+|++++|+..|++++.+.|.. . ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 366677788899999999999999999742 236789999999999999999999999999988742 1 123
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 101 LDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 101 l~~~L~~ly~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
..+.+|.+|... |++++|+.+|++++++.|... ... ....++.++|.+|..+|++++|+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--------------~~~------~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------------SVA------LSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------------CHH------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------------ChH------HHHHHHHHHHHHHHHhCCHHHHH
Confidence 556689999996 999999999999999865210 000 01357899999999999999999
Q ss_pred HHHHHHHHhCCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 180 VVYQKAQMIDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+|++++++.|++.. +.++|.++..+|++++|+..|++++..
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999998652 478999999999999999999999987
No 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=2.9e-18 Score=162.93 Aligned_cols=206 Identities=15% Similarity=0.102 Sum_probs=136.2
Q ss_pred chhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442 14 KKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC 93 (297)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~ 93 (297)
+....|....+..+...++...+.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+
T Consensus 261 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 261 DAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33444433333322345566666666666777777777777777777777777777777777777777777777777777
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh------hHH--HhcCCCcH------
Q 022442 94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETS------ 159 (297)
Q Consensus 94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~------ 159 (297)
|++. .....+|.+|...|++++|+..|+++++..|................++ .+. +.+.|++.
T Consensus 341 ~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 PENV--YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp TTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 6543 2344466677777777777777777777655322110000000000000 010 12222222
Q ss_pred HHHHHHHHHHHHC----------CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 160 RLLGNLAWAYMQK----------TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 160 ~~l~nLg~~y~~~----------g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+.++|.+|..+ |++++|+.+|+++++++|++.. +.++|.+|..+|++++|+..|++++..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2467788999999 9999999999999999999998 999999999999999999999999997
No 55
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.80 E-value=1.2e-18 Score=168.99 Aligned_cols=154 Identities=12% Similarity=0.006 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 121 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~ 121 (297)
.|++++|+.+|+++++.+|++..++.++|.++..+|++++|++.|+++++++|++. .....+|.+|..+|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999853 4566689999999999999999
Q ss_pred HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHH
Q 022442 122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL 200 (297)
Q Consensus 122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~ 200 (297)
|++++++.| +++.++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.
T Consensus 80 ~~~al~~~p--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 80 LQQASDAAP--------------------------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCC--------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999854 56779999999999999999999999999999999998 999999
Q ss_pred HHHHc---CCHHHHHHHHHHHHhcCC
Q 022442 201 CLIKR---TRYNEARSVLEDVLYGRI 223 (297)
Q Consensus 201 ~l~~~---g~~~eA~~~~~~al~~~~ 223 (297)
++..+ |++++|...|++++...+
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCC
Confidence 99999 999999999999998743
No 56
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=4.5e-18 Score=152.19 Aligned_cols=179 Identities=11% Similarity=0.055 Sum_probs=135.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHH
Q 022442 33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~--~P~~~~~~l~~~L~~ly~ 110 (297)
....+.++..|+++.|+..++. .+|....++..++..+...|++++|++.+++++.. +|+++ .+...+|.+|.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~--~~~~~la~~~~ 112 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT--TFLLMAASIYF 112 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH--HHHHHHHHHHH
Confidence 3446778899999999998865 36667888999999999999999999999998875 58753 45667899999
Q ss_pred HcCCHHHHHHHHHHHHHhhchh-hhhcCcchhHHhhhhh------hHH--HhcCCCcHHHHHHHH--HHHHHCCChHHHH
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLA--WAYMQKTNFMAAE 179 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~-~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~l~nLg--~~y~~~g~~~eA~ 179 (297)
..|++++|+..|++ |.. .++.. ...+....++ .+. +.+.|++..+....| .++...|++++|+
T Consensus 113 ~~g~~~~Al~~l~~-----~~~~~~~~~-l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ-----GDSLECMAM-TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp HTTCHHHHHHHHTT-----CCSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HCCCHHHHHHHHhC-----CCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 99999999999988 321 11110 0001011111 111 456787754433333 3334569999999
Q ss_pred HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
.+|+++++.+|+++. ++++|.++..+|++++|+..|++++...
T Consensus 187 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 187 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999998 8899999999999999999999999973
No 57
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-18 Score=164.59 Aligned_cols=189 Identities=16% Similarity=0.029 Sum_probs=145.8
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
.++...+.++...|++++|+.+|++++..+|. ..++..+|.++...|++++|+..+++++..+|.+. .....+|.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHHHHHH
Confidence 35677788889999999999999999999999 99999999999999999999999999999999754 4566689999
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVV 181 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~ 181 (297)
...|++++|+..|++++++.|................+ ..+. +.+.|+++.++.++|.+|...|++++|+.+
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999987642111000000000000 0111 355677777788888888888888888888
Q ss_pred HHHHHHhCCCcH-------HHhHHHHHHHH---cCCHHHHHHHHHHHHhc
Q 022442 182 YQKAQMIDPDAN-------KACNLGLCLIK---RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 182 y~~Al~~~P~~~-------~~~nLg~~l~~---~g~~~eA~~~~~~al~~ 221 (297)
|++++.+.|+++ .+.++|.++.. .|++++|+..+++++..
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 888888777763 36677888887 78888888888887776
No 58
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.80 E-value=4e-19 Score=144.39 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=82.2
Q ss_pred HHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHH
Q 022442 85 AIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN 164 (297)
Q Consensus 85 ~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~n 164 (297)
.+++++.++|++. ...+.+|.++.+.|++++|+..|++++.+. |+++.+|.+
T Consensus 24 ~l~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------P~~~~~~~~ 75 (151)
T 3gyz_A 24 TLKDINAIPDDMM--DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------FYNVDYIMG 75 (151)
T ss_dssp CTGGGCCSCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHH
T ss_pred CHHHHhCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHH
Confidence 3445566666532 334446677777777777777777777663 345667777
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442 165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL 242 (297)
Q Consensus 165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~ 242 (297)
||.+|..+|++++|+.+|++|++++|+++. ++++|.+|..+|++++|+..|++++.. .++ ..-.++|..++..+
T Consensus 76 lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l---~~~-~~~~~~A~~ll~~l 150 (151)
T 3gyz_A 76 LAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH---SND-EKLKIKAQSYLDAI 150 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-HHHHHHHHHHHHhh
Confidence 777777777777777777777777777776 777777777777777777777777775 222 22344555555543
No 59
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=9.7e-19 Score=174.12 Aligned_cols=168 Identities=10% Similarity=-0.055 Sum_probs=143.8
Q ss_pred hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442 23 HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD 102 (297)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~ 102 (297)
...|....++...+.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|++.|+++++++|+++ ..+
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~ 504 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--APK 504 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--HHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHH
Confidence 344777778888899999999999999999999999999999999999999999999999999999999999854 455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
+.+|.+|.++|++++ +..|+++++++ |+++.+++++|.+|..+|++++|+..|
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTN--------------------------DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhC--------------------------CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 668999999999999 99999999985 457789999999999999999999999
Q ss_pred HHHHHhCCCcHH-HhHHHHHHHHcCCHHHH-HHHHHHHH
Q 022442 183 QKAQMIDPDANK-ACNLGLCLIKRTRYNEA-RSVLEDVL 219 (297)
Q Consensus 183 ~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA-~~~~~~al 219 (297)
++|++++|++.. ++++|.++...|+.+++ ...+++++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 999999999998 99999999887774444 33343333
No 60
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.6e-18 Score=159.18 Aligned_cols=190 Identities=15% Similarity=0.108 Sum_probs=120.2
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL 108 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l 108 (297)
..++...+.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+. .....+|.+
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~ 347 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI--FPYIQLACL 347 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH--HHHHHHHHH
Confidence 334444455555555555566666655555555555555556666666666666666655555555432 233335555
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCcH------HHHHHHHHHHHH--
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETS------RLLGNLAWAYMQ-- 171 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~------~~l~nLg~~y~~-- 171 (297)
|...|++++|+..|+++++..|... .+.. ........+ ..+. +.+.|+++ .++.++|.+|..
T Consensus 348 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNF-FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp TTTTTCHHHHHHHHHHHHHHSTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Confidence 5555666666666665555544211 1100 000000000 0000 22334443 389999999999
Q ss_pred -CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 172 -KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 172 -~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.|++++|+.+|++++.++|+++. +.++|.++..+|++++|+..|++++..
T Consensus 427 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999998 899999999999999999999999997
No 61
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=5.1e-19 Score=143.73 Aligned_cols=116 Identities=9% Similarity=-0.020 Sum_probs=107.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 50 VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 50 ~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
..+++++.++|+++++++.+|.++.++|++++|+..|++++.++|+++ ..+..+|.+|..+|++++|+.+|++++++.
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 467888999999999999999999999999999999999999999854 455668999999999999999999999985
Q ss_pred chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 130 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 130 p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
|+++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 101 --------------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 --------------------------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp --------------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred --------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 46778999999999999999999999999999999986
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3.7e-18 Score=153.17 Aligned_cols=204 Identities=6% Similarity=-0.026 Sum_probs=150.1
Q ss_pred hhh-hhhhcCCCCCcHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCChH
Q 022442 17 DLF-HVIHKVPAGDGPYVRAKHAQL-------VQKDP-------EAAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSE 80 (297)
Q Consensus 17 ~~~-~~~~~~~~~~~~~~~~~~~~~-------~~g~~-------~~A~~~~~~al~-~~p~~~~a~~~Lg~~l~~~g~~~ 80 (297)
..| +.+...|..+..+...+.+.. ..|++ ++|+..|++|++ ++|++..+|..+|.++..+|+++
T Consensus 37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~ 116 (308)
T 2ond_A 37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 116 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 566 555556777777777777665 35886 899999999999 79999999999999999999999
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-hcCcchhHH----hhh---hhhHH-
Q 022442 81 EAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-FNGKPTKTA----RSH---GKKFQ- 151 (297)
Q Consensus 81 eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-~~~~~~~~~----~~~---~~~~~- 151 (297)
+|++.|++++++.|.+.. .++..+|.++.+.|++++|+.+|+++++..|.... +.+.. ... ... ...+.
T Consensus 117 ~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a-~~~~~~~~~~~~A~~~~~~ 194 (308)
T 2ond_A 117 KVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA-LMEYYCSKDKSVAFKIFEL 194 (308)
T ss_dssp HHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH-HHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCcc-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence 999999999999997542 25566889999999999999999999998663211 10000 000 000 01111
Q ss_pred -HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 152 -VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI---DPD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 152 -~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~---~P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
+.+.|+++.++.++|.++..+|++++|+.+|++++.. .|+ ... |..++.++...|++++|..++++++...
T Consensus 195 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 4556777777777777777777777777777777774 454 445 6677777777777777777777777763
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=4.6e-18 Score=147.18 Aligned_cols=174 Identities=19% Similarity=0.167 Sum_probs=142.7
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Ccc
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ 96 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~ 96 (297)
.++...+.++...|++++|+.+|++++.. +|....++.++|.++..+|++++|+..|++++... |++
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35777888899999999999999999986 46678899999999999999999999999998873 211
Q ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442 97 -SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF 175 (297)
Q Consensus 97 -~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~ 175 (297)
........+|.+|...|++++|+..|++++++.... .+ .-.|....++.++|.+|..+|++
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~-----~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR-------------LG-----PDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------SC-----TTCHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------cC-----CCCHHHHHHHHHHHHHHHHcCCH
Confidence 123456678999999999999999999999973100 00 00122456899999999999999
Q ss_pred HHHHHHHHHHHHhC-------------------------------------------------CCcHH-HhHHHHHHHHc
Q 022442 176 MAAEVVYQKAQMID-------------------------------------------------PDANK-ACNLGLCLIKR 205 (297)
Q Consensus 176 ~eA~~~y~~Al~~~-------------------------------------------------P~~~~-~~nLg~~l~~~ 205 (297)
++|+.+|++++++. |+... +.+||.+|..+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 265 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ 265 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999872 33344 67899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 022442 206 TRYNEARSVLEDVLYG 221 (297)
Q Consensus 206 g~~~eA~~~~~~al~~ 221 (297)
|++++|+.+|++++..
T Consensus 266 g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 266 GKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999875
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=2.5e-17 Score=144.15 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=79.2
Q ss_pred CcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchHHH
Q 022442 29 DGPYVRAKHAQLV----QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQES 100 (297)
Q Consensus 29 ~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~~~ 100 (297)
..+++.++.++.. .+++++|+.+|+++++.+ ++.+++++|.++.. .+++++|+..|++++..+.. .
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~ 111 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA----E 111 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----H
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCc----c
Confidence 3344444444444 555555555555555443 34445555555555 55555555555555444211 2
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----C
Q 022442 101 LDNVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----K 172 (297)
Q Consensus 101 l~~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~ 172 (297)
....+|.+|.. .|++++|+..|+++++. +++.++.++|.+|.. .
T Consensus 112 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------------------------~~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 112 GCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----------------------------NDGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----------------------------CcHHHHHHHHHHHHcCCCCC
Confidence 22334445554 55555555555555544 344455555555555 5
Q ss_pred CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442 173 TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 173 g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~ 221 (297)
+++++|+.+|+++++. +++. +++||.+|.. .+++++|+.+|++++..
T Consensus 164 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 164 KDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 5555555555555554 2333 5555555555 55555555555555553
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=8.5e-17 Score=140.77 Aligned_cols=159 Identities=16% Similarity=0.085 Sum_probs=142.3
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442 27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLD 102 (297)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~~~l~ 102 (297)
....+++..+..+...|++++|+.+|+++++ |+++.+++++|.++.. .|++++|+..|++++..+.. ...
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS----NGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCH----HHH
Confidence 3455788889999999999999999999999 7788999999999999 99999999999999988632 355
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCC
Q 022442 103 NVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTN 174 (297)
Q Consensus 103 ~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~ 174 (297)
..+|.+|.. .|++++|+..|+++++.. ++.++.+||.+|.. .++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------------------------YAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHCSSSCCC
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------CccHHHHHHHHHHcCCCcccC
Confidence 568999999 999999999999999862 45689999999999 999
Q ss_pred hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442 175 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 175 ~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~ 221 (297)
+++|+.+|+++++.+ ++. +.+||.+|.. .+++++|+.+|++++..
T Consensus 130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 999999999999986 555 8899999999 99999999999999986
No 66
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.2e-16 Score=149.95 Aligned_cols=194 Identities=14% Similarity=0.060 Sum_probs=142.4
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----
Q 022442 29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINA---------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK---- 95 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~---- 95 (297)
.+.|..++.++...|++++|+..|++|+++ +|....++.++|.+|..+|++++|+..+++++.+.|.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777899999999999999999999975 6778889999999999999999999999999877542
Q ss_pred -c-hHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhhchhhhhc-C--cchhHHhhhh------hhH--HHhcCCCcHH
Q 022442 96 -Q-SQESLDNVLIDLYKK--CGKVEEQIEMLKRKLRLIYQGEAFN-G--KPTKTARSHG------KKF--QVSVRQETSR 160 (297)
Q Consensus 96 -~-~~~~l~~~L~~ly~~--~g~~~eAi~~~~~al~~~p~~~~~~-~--~~~~~~~~~~------~~~--~~~l~p~~~~ 160 (297)
. ........+|..+.. .+++++|+.+|++++++.|...... + .........+ ..+ .+.++|+++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 0 012334445655555 4579999999999999988543211 1 0000000000 111 1567888888
Q ss_pred HHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 161 LLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 161 ~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
++.++|.++.. .|++++|+.+|++++.++|++.. +.++|.+|...|++++|+..|++++...
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 88888876654 46778888888888888888887 8888888888889888888888888763
No 67
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=1.8e-18 Score=139.46 Aligned_cols=119 Identities=14% Similarity=-0.040 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
+-..|++++..+|++..+++.+|.++..+|++++|+..|++++..+|+++ ..+..+|.+|...|++++|+..|++++.
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33467777888888888888888888888888888888888888887643 3444577777778888888888877777
Q ss_pred hhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 128 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 128 ~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
+.| +++.+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus 84 l~p--------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 84 MDI--------------------------XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HST--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred cCC--------------------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 643 45567777888888888888888888888877777664
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.76 E-value=1.3e-17 Score=145.41 Aligned_cols=181 Identities=15% Similarity=0.059 Sum_probs=147.3
Q ss_pred cccccchhhhhh-hhhcCCCC---CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHH------
Q 022442 9 KIFSSKKEDLFH-VIHKVPAG---DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGD---RVDSALKDMAVVMKQ------ 75 (297)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~Lg~~l~~------ 75 (297)
++.-.+..+.|. ++...|.+ ..+++.++.++...|++++|+..|+++++..| ..+.+++.+|.++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 344455566774 44455666 55788899999999999999999999999877 457899999999999
Q ss_pred --CCChHHHHHHHHHHHhhCCcchHHH-HH--------------HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442 76 --LDRSEEAIEAIKSFRGLCSKQSQES-LD--------------NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 138 (297)
Q Consensus 76 --~g~~~eAi~~~~~al~~~P~~~~~~-l~--------------~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 138 (297)
+|++++|+..|++++..+|++.... .. ..+|.+|...|++++|+..|+++++..|..
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------ 181 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT------ 181 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS------
T ss_pred ccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC------
Confidence 9999999999999999999742211 11 557999999999999999999999986621
Q ss_pred chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC----------CChHHHHHHHHHHHHhCCCcHH----HhHHHHHHHH
Q 022442 139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK----------TNFMAAEVVYQKAQMIDPDANK----ACNLGLCLIK 204 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~----------g~~~eA~~~y~~Al~~~P~~~~----~~nLg~~l~~ 204 (297)
+..+.++..+|.+|..+ |++++|+.+|+++++..|+++. ...|+.++..
T Consensus 182 -----------------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 182 -----------------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred -----------------chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 12456899999999977 9999999999999999999963 4467888888
Q ss_pred cCCHHHHH
Q 022442 205 RTRYNEAR 212 (297)
Q Consensus 205 ~g~~~eA~ 212 (297)
+|+++++.
T Consensus 245 ~~~~~~~~ 252 (261)
T 3qky_A 245 LTELEGDA 252 (261)
T ss_dssp HHHHHTCT
T ss_pred HHHhhhhh
Confidence 77776653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.76 E-value=1.3e-17 Score=153.38 Aligned_cols=185 Identities=13% Similarity=0.070 Sum_probs=149.1
Q ss_pred hhhhhhhcCCCCCcHHHH------HHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCChHHHHH
Q 022442 17 DLFHVIHKVPAGDGPYVR------AKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIE 84 (297)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~~~eAi~ 84 (297)
+.+..+.+.|.....+.. .+..+...|++++|+.+|++++.+ .+..+.++.++|.++..+|++++|+.
T Consensus 85 ~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~ 164 (383)
T 3ulq_A 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD 164 (383)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555433333333 677788999999999999999986 23356889999999999999999999
Q ss_pred HHHHHHhhCCcc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH
Q 022442 85 AIKSFRGLCSKQ-----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 159 (297)
Q Consensus 85 ~~~~al~~~P~~-----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 159 (297)
.+++++.+.+.. ......+.+|.+|...|++++|+..|++++++.+.. +.. +..+
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~------~~~~ 224 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--------------KQP------QLMG 224 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--------------CCh------HHHH
Confidence 999999875531 122455678999999999999999999999985421 000 0123
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHH-----hC-CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQM-----ID-PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~-----~~-P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.++.++|.+|..+|++++|+.+|++|++ .+ |.... +.+||.++..+|++++|+.++++++..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999 45 66766 889999999999999999999999975
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.9e-17 Score=144.51 Aligned_cols=173 Identities=23% Similarity=0.307 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Cc-c
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SK-Q 96 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~-~ 96 (297)
++...+.++...|++++|+.+|+++++. +|....++..+|.++...|++++|+..+++++.+. ++ .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 5777788889999999999999999994 67788999999999999999999999999998873 21 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442 97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~ 176 (297)
........+|.+|...|++++|+..|++++++.... .+ .-.|....++.++|.+|..+|+++
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~~-----~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-------------LG-----KDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------HC-----TTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-------------cC-----CCChHHHHHHHHHHHHHHHcCCHH
Confidence 123456678999999999999999999999974100 00 001224568999999999999999
Q ss_pred HHHHHHHHHHHh--------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 177 AAEVVYQKAQMI--------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 177 eA~~~y~~Al~~--------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|+.+|++++++ .|.... +.++|.+|..+|++++|+.++++++..
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999998 666666 889999999999999999999999974
No 71
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.76 E-value=1.1e-18 Score=159.30 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=138.6
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-------------HHHHHHHHHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDL 108 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-------------~~~l~~~L~~l 108 (297)
.+++++|+..|++++..+|..+.++.++|.++..+|++++|+..|++++.+.|.+. ....++.+|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999742 02466679999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
|.++|++++|+..|++++++.| +++.+++++|.+|..+|++++|+.+|++|+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p--------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDS--------------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999854 56789999999999999999999999999999
Q ss_pred CCCcHH-HhHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 022442 189 DPDANK-ACNLGLCLIKRTRYNEA-RSVLEDVLYG 221 (297)
Q Consensus 189 ~P~~~~-~~nLg~~l~~~g~~~eA-~~~~~~al~~ 221 (297)
+|++.. +.+|+.++..+|++++| ...|++++..
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 99999999999999999 5577777753
No 72
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.6e-17 Score=153.49 Aligned_cols=256 Identities=13% Similarity=0.068 Sum_probs=167.0
Q ss_pred chhhhhhhhhc-CCCCCcHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CChHHHHHH
Q 022442 14 KKEDLFHVIHK-VPAGDGPYVRAKHAQ---LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEA 85 (297)
Q Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~----g~~~eAi~~ 85 (297)
+..+.|..... -|..+.++...+.+. -..++.++|+..|+++++++|+++.++.++|..+... |++++|+..
T Consensus 156 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~ 235 (472)
T 4g1t_A 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34556644333 455554554444442 2457778888888888888888888888888766554 577889999
Q ss_pred HHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-hc--Ccch-------------------hHH
Q 022442 86 IKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-FN--GKPT-------------------KTA 143 (297)
Q Consensus 86 ~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-~~--~~~~-------------------~~~ 143 (297)
+++++..+|... .....+|.+|...|++++|+..|++++++.|.... +. +... ...
T Consensus 236 ~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~ 313 (472)
T 4g1t_A 236 VEEALEKAPGVT--DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313 (472)
T ss_dssp HHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred HHHHHHhCccHH--HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999998743 45556899999999999999999999999875321 11 1000 000
Q ss_pred hhhhh---hHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH----HhHHHHH-HHHcCCHHHHHH
Q 022442 144 RSHGK---KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK----ACNLGLC-LIKRTRYNEARS 213 (297)
Q Consensus 144 ~~~~~---~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~----~~nLg~~-l~~~g~~~eA~~ 213 (297)
..... .+. +.++|.+..++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.+ +..+|++++|+.
T Consensus 314 ~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 00000 111 4678999999999999999999999999999999999998763 3566654 457899999999
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHH-HhcCCCCchhhhhcccch-----hHHHHHHHHHH
Q 022442 214 VLEDVLYGRIPGCEDGRTRKRAEELLLEL-ESKQPPPDLSDLLGLNLE-----DEFVNGLEEMV 271 (297)
Q Consensus 214 ~~~~al~~~~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~l 271 (297)
.|++++...+...........+..++... ...+..+.+...+|..+. +++++.|+..+
T Consensus 394 ~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999997332222233333344444333 333446777888888762 44555555443
No 73
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=1.3e-17 Score=134.37 Aligned_cols=133 Identities=16% Similarity=0.063 Sum_probs=111.3
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 163 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~ 163 (297)
..|++++.++|++. ...+.+|.++...|++++|+..|++++.+. |+++.+++
T Consensus 8 ~~~~~al~~~p~~~--~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~ 59 (148)
T 2vgx_A 8 GTIAMLNEISSDTL--EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------------------HYDSRFFL 59 (148)
T ss_dssp CSHHHHTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHH
T ss_pred hhHHHHHcCCHhhH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------cccHHHHH
Confidence 45788899999743 455568999999999999999999999874 45778999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL 242 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~ 242 (297)
++|.+|..+|++++|+.+|++++.++|+++. ++++|.+|..+|++++|+..|++++...+..+.......++..++..+
T Consensus 60 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 139 (148)
T 2vgx_A 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 999999999999999999999999987443343344445666666665
Q ss_pred Hh
Q 022442 243 ES 244 (297)
Q Consensus 243 ~~ 244 (297)
..
T Consensus 140 ~~ 141 (148)
T 2vgx_A 140 KL 141 (148)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 74
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.75 E-value=4e-17 Score=127.98 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=97.2
Q ss_pred HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHH
Q 022442 88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAW 167 (297)
Q Consensus 88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~ 167 (297)
++..++|+.+ ..+..+|..|.+.|++++|+..|+++|++. |+++.++.++|.
T Consensus 4 r~a~inP~~a--~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~~~ 55 (126)
T 4gco_A 4 RLAYINPELA--QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------PENAILYSNRAA 55 (126)
T ss_dssp ---CCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHH
T ss_pred HHHHHCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHhh
Confidence 3456788743 455668999999999999999999999985 457789999999
Q ss_pred HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcch
Q 022442 168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDG 229 (297)
Q Consensus 168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~ 229 (297)
+|..+|++++|+..|++|++++|+++. ++++|.+|..+|++++|+..|++++.. +|.+.
T Consensus 56 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l---~P~~~ 115 (126)
T 4gco_A 56 CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV---DPSNE 115 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CcCCH
Confidence 999999999999999999999999998 999999999999999999999999998 45443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=7.3e-17 Score=148.36 Aligned_cols=171 Identities=16% Similarity=0.050 Sum_probs=142.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-----hHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAG------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----SQES 100 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-----~~~~ 100 (297)
++..|..+...|++++|+.+|++|+... +..+.++.++|.++..+|++++|+..+++++.+.+.. ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 3445667788999999999999999862 2356789999999999999999999999999876531 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
..+.+|.+|...|++++|+..|++++++.+.. +.. +....++.+||.+|..+|++++|+.
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--------------~~~------~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDI--------------QND------RFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------------CCH------HHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 45679999999999999999999999984310 000 0124589999999999999999999
Q ss_pred HHHHHHH-----hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 181 VYQKAQM-----IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 181 ~y~~Al~-----~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
+|+++++ .+|.... +.+||.++..+|++++|+.++++++...
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999 7788766 8899999999999999999999999863
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=5.3e-17 Score=137.65 Aligned_cols=131 Identities=12% Similarity=0.053 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV----------------LIDLYKKCGKVEEQIEMLKRK 125 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~----------------L~~ly~~~g~~~eAi~~~~~a 125 (297)
..+.+...|..+...|++++|+..|++++..+|+++ ..+.. +|.+|...|++++|+..|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456788899999999999999999999999999843 34455 899999999999999999999
Q ss_pred HHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH
Q 022442 126 LRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK 204 (297)
Q Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~ 204 (297)
+++. |+++.++.++|.+|..+|++++|+.+|+++++++|+++. +++||.+|..
T Consensus 81 l~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 81 LQKA--------------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9985 467789999999999999999999999999999999998 9999999987
Q ss_pred cCC--HHHHHHHHHHHHh
Q 022442 205 RTR--YNEARSVLEDVLY 220 (297)
Q Consensus 205 ~g~--~~eA~~~~~~al~ 220 (297)
+|+ .+++...+++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp HHHHHHHHHHHHHC---C
T ss_pred HhHHHHHHHHHHHHHHhC
Confidence 764 4556677777654
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=144.26 Aligned_cols=174 Identities=20% Similarity=0.196 Sum_probs=143.5
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Ccc
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ 96 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~ 96 (297)
.++...+.++...|++++|+.+|++++.. +|....++..+|.++..+|++++|+..+++++.+. ++.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35777788889999999999999999986 46678899999999999999999999999998874 221
Q ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442 97 -SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF 175 (297)
Q Consensus 97 -~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~ 175 (297)
........+|.+|...|++++|+.+|++++++.... .+. -.|....++.++|.+|..+|++
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~-----~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK-------------LGP-----DDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-------------SCT-----TCHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------------hCC-----CCHHHHHHHHHHHHHHHHcCCH
Confidence 123456678999999999999999999999973100 000 0122456889999999999999
Q ss_pred HHHHHHHHHHHHh-------------------------------------------------CCCcHH-HhHHHHHHHHc
Q 022442 176 MAAEVVYQKAQMI-------------------------------------------------DPDANK-ACNLGLCLIKR 205 (297)
Q Consensus 176 ~eA~~~y~~Al~~-------------------------------------------------~P~~~~-~~nLg~~l~~~ 205 (297)
++|+.+|++++++ .|+... +.+||.+|..+
T Consensus 212 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~ 291 (311)
T 3nf1_A 212 KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC
Confidence 9999999999985 355556 78999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 022442 206 TRYNEARSVLEDVLYG 221 (297)
Q Consensus 206 g~~~eA~~~~~~al~~ 221 (297)
|++++|+.+|++++..
T Consensus 292 g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 292 GKFEAAETLEEAAMRS 307 (311)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999986
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=3.3e-17 Score=146.06 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCcch----HH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQL-DRSEEAIEAIKSFRGLCSKQS----QE 99 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~l~~~-g~~~eAi~~~~~al~~~P~~~----~~ 99 (297)
++..++.++...|++++|+.+|++|+.+.|.. ..++.++|.+|..+ |++++|+..|++++.+.|... ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 57778888999999999999999999976643 56899999999996 999999999999999988521 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
...+.+|.+|..+|++++|+..|++++++.|...... .....++.++|.+|..+|++++|+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ-------------------WSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG-------------------GGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc-------------------HHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3456689999999999999999999999865321000 001247899999999999999999
Q ss_pred HHHHHHHHhCCCcHH------HhHHHHHHH--HcCCHHHHHHHHHHHHhc
Q 022442 180 VVYQKAQMIDPDANK------ACNLGLCLI--KRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~------~~nLg~~l~--~~g~~~eA~~~~~~al~~ 221 (297)
.+|+++++++|++.. +.+|+.++. ..+++++|+..|++++..
T Consensus 220 ~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 999999999998764 235666664 457899999999888775
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=4.5e-17 Score=140.92 Aligned_cols=164 Identities=24% Similarity=0.323 Sum_probs=134.7
Q ss_pred HHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Ccc-hHHHHHHHH
Q 022442 40 LVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ-SQESLDNVL 105 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~-~~~~l~~~L 105 (297)
...|++++|+.+|++++.. +|....++..+|.++..+|++++|+..+++++.+. +++ ........+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3568888899999988882 36778899999999999999999999999998874 221 123456678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
|.+|...|++++|+..|++++.+.... . + .-.|....++.++|.+|..+|++++|+.+|+++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~----------~---~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKV----------L---G-----KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHH----------H---C-----TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH----------c---C-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999974200 0 0 001234568999999999999999999999999
Q ss_pred HHh--------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 186 QMI--------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~--------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++ .|.... +.++|.++..+|++++|+.++++++..
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999 666666 889999999999999999999999975
No 80
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=1.1e-16 Score=143.74 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=138.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--c--hHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--Q--SQESL 101 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~--~~~~l 101 (297)
|..++.++...|++++|+..|++++.+.+. ...++.++|.+|..+|++++|+..|++++.+.+. + .....
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666677888899999999999999987543 3568999999999999999999999999987542 1 12244
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 181 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~ 181 (297)
...+|.+|.. |++++|+.+|++++++.+.. +... ....++.++|.+|..+|++++|+.+
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--------------~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~ 177 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--------------ERLR------QAAELIGKASRLLVRQQKFDEAAAS 177 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--------------TCHH------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--------------CChh------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5668999988 99999999999999986521 0000 0235889999999999999999999
Q ss_pred HHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 182 YQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 182 y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|++++++.|++. . +.++|.++..+|++++|+..|++++ .
T Consensus 178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 999999876542 3 6789999999999999999999999 6
No 81
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.73 E-value=1.8e-17 Score=131.79 Aligned_cols=117 Identities=11% Similarity=-0.017 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 50 VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 50 ~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++ ..+..+|.+|...|++++|+..|++++.+.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456666777777777777777777777777777777777777777643 334446677777777777777777777663
Q ss_pred chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 130 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 130 p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
| +++.+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus 83 p--------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 83 I--------------------------NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp T--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred C--------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 3 44556677777777777777777777777777776664
No 82
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.73 E-value=3.9e-17 Score=145.18 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=152.4
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 022442 28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID 107 (297)
Q Consensus 28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ 107 (297)
....+...+..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++.++|++. ...+.+|.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence 4456777888899999999999999999999999999999999999999999999999999999999853 45667899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh-----hhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG-----KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~-----~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
+|...|++++|+..|++++++.|......+.......... ........|..+.+...+|.++ .|++++|++.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999999999999999998754211111000000000 1111234566677777887766 69999999999
Q ss_pred HHHHHhCCCcHH-HhHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 022442 183 QKAQMIDPDANK-ACNLGLCLIKR-TRYNEARSVLEDVLYG 221 (297)
Q Consensus 183 ~~Al~~~P~~~~-~~nLg~~l~~~-g~~~eA~~~~~~al~~ 221 (297)
+++++++|++.. ...++..+... +++++|..+|+++...
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999987 67777777766 7899999999998864
No 83
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=5.8e-16 Score=138.76 Aligned_cols=173 Identities=14% Similarity=0.034 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHH-------HCCCh-------HHHHHHHHHHHh-hCCcchHHHHHHHHHHHHH
Q 022442 46 EAAIVLFWKAINAGDRVDSALKDMAVVMK-------QLDRS-------EEAIEAIKSFRG-LCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 46 ~~A~~~~~~al~~~p~~~~a~~~Lg~~l~-------~~g~~-------~eAi~~~~~al~-~~P~~~~~~l~~~L~~ly~ 110 (297)
++|+..|++++..+|+++++|+++|.++. ..|++ ++|+..|++++. ++|++. .++..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~--~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 78999999999999999999999999987 46887 999999999999 789743 46666899999
Q ss_pred HcCCHHHHHHHHHHHHHhhchhh--hhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHHHHHHHH-HCCChHHHH
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGE--AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYM-QKTNFMAAE 179 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~--~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~nLg~~y~-~~g~~~eA~ 179 (297)
..|++++|+.+|++++++.|... ++... .......+ ..+. +.+.|....++...+.+.. .+|++++|+
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQY-MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHH-HHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHH-HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999877432 22211 01111111 1122 4566877777766665543 379999999
Q ss_pred HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+|+++++.+|+++. |.++|.++..+|++++|+.+|++++..
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999998 999999999999999999999999985
No 84
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=9.5e-17 Score=127.62 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=108.8
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 163 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~ 163 (297)
..|++++.++|++. .....+|.++...|++++|+..|++++.+. |+++.++.
T Consensus 5 ~~l~~al~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~ 56 (142)
T 2xcb_A 5 GTLAMLRGLSEDTL--EQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------HYDARYFL 56 (142)
T ss_dssp ----CCTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHH
T ss_pred hhHHHHHcCCHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------CccHHHHH
Confidence 46777888888743 445568999999999999999999999874 45778999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL 242 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~ 242 (297)
++|.+|..+|++++|+.+|++++.++|+++. ++++|.+|..+|++++|+..|++++...+.++.......++...+..+
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 999999999999999999999999987443444444455666666665
Q ss_pred H
Q 022442 243 E 243 (297)
Q Consensus 243 ~ 243 (297)
.
T Consensus 137 ~ 137 (142)
T 2xcb_A 137 T 137 (142)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.71 E-value=3.5e-16 Score=126.78 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=132.5
Q ss_pred chhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
+....|..+.+. |....++...+.++...|++++|+.+++++++.+|..+.++..+|.++...|++++|+..+++++..
T Consensus 26 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 26 QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 334445433333 5555577788888999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442 93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 172 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~ 172 (297)
.|.+. .....+|.+|...|++++|+..++++++..| +++.++.++|.+|..+
T Consensus 106 ~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 106 NPINF--NVRFRLGVALDNLGRFDEAIDSFKIALGLRP--------------------------NEGKVHRAIAFSYEQM 157 (186)
T ss_dssp CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHT
T ss_pred CcHhH--HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--------------------------cchHHHHHHHHHHHHc
Confidence 99753 4556689999999999999999999998743 4567899999999999
Q ss_pred CChHHHHHHHHHHHHhCCCcHH
Q 022442 173 TNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 173 g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
|++++|+.+|+++++++|++..
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCCG
T ss_pred CCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999998764
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=1.2e-15 Score=116.80 Aligned_cols=129 Identities=26% Similarity=0.265 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHh
Q 022442 65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR 144 (297)
Q Consensus 65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~ 144 (297)
+++.+|.++...|++++|+..+++++...|.+. .....++.++...|++++|+..+++++...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------- 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------- 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--------------
Confidence 455666666666666666666666666666532 2333456666666666666666666665532
Q ss_pred hhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 145 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 145 ~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++.++.++|.++...|++++|+.+|++++...|++.. +..+|.++...|++++|...+++++..
T Consensus 67 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 ------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 23445666666666666666666666666666666665 666666666666666666666666654
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=6.6e-16 Score=137.54 Aligned_cols=135 Identities=15% Similarity=0.057 Sum_probs=123.2
Q ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442 59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 138 (297)
Q Consensus 59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 138 (297)
-|...++++.+|..+.+.|++++|+..|++++..+|++. .....||.+|...|++++|+..|++++...|
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-------- 182 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-------- 182 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--------
Confidence 389999999999999999999999999999999999854 4566689999999999999999999888754
Q ss_pred chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
+......+++..+.+.++.++|+..|+++++.+|+++. +++||.+|...|++++|+..|++
T Consensus 183 ------------------~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 183 ------------------DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp ------------------SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33345677888899999999999999999999999999 99999999999999999999999
Q ss_pred HHhc
Q 022442 218 VLYG 221 (297)
Q Consensus 218 al~~ 221 (297)
++..
T Consensus 245 ~l~~ 248 (287)
T 3qou_A 245 HLRX 248 (287)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9997
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=1.5e-15 Score=116.25 Aligned_cols=134 Identities=25% Similarity=0.261 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
++...+.++...|++++|+.+++++++.+|....++..+|.++...|++++|+..+++++...|... .....+|.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHHH
Confidence 5667788888999999999999999999999999999999999999999999999999999999743 35566899999
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
..|++++|+..++++++..| ++..++..+|.+|...|++++|+.+|++++..+|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP--------------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhCC--------------------------CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 99999999999999998743 4567999999999999999999999999999999
Q ss_pred Cc
Q 022442 191 DA 192 (297)
Q Consensus 191 ~~ 192 (297)
++
T Consensus 135 ~~ 136 (136)
T 2fo7_A 135 RS 136 (136)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 89
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=2.1e-15 Score=128.25 Aligned_cols=172 Identities=13% Similarity=0.034 Sum_probs=144.3
Q ss_pred hhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----ChHHHHHHHHHHHhh
Q 022442 17 DLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD----RSEEAIEAIKSFRGL 92 (297)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g----~~~eAi~~~~~al~~ 92 (297)
..|....+. ....+.+.++.++...+++++|+.+|++++.. +++.++++||.+|.. + ++++|+..|+++...
T Consensus 7 ~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~ 82 (212)
T 3rjv_A 7 SQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA 82 (212)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC
Confidence 345444544 45668889999999999999999999999885 578999999999998 7 999999999999765
Q ss_pred CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442 93 CSKQSQESLDNVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA 168 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~ 168 (297)
... ...+.||.+|.. .+++++|+..|+++++..+.. +++.++++||.+
T Consensus 83 g~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 83 GSK----SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------AAVDAQMLLGLI 134 (212)
T ss_dssp TCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------HHHHHHHHHHHH
T ss_pred CCH----HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------chHHHHHHHHHH
Confidence 432 345568989988 899999999999999874300 125789999999
Q ss_pred HHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 022442 169 YMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR-T-----RYNEARSVLEDVLYG 221 (297)
Q Consensus 169 y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~-g-----~~~eA~~~~~~al~~ 221 (297)
|.. .+++++|+.+|++|+++ |.++. .++||.+|... | ++++|+.+|+++++.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999 89999999999999999 66676 99999999865 3 899999999999986
No 90
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.3e-16 Score=118.69 Aligned_cols=117 Identities=10% Similarity=-0.080 Sum_probs=96.8
Q ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442 60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 139 (297)
Q Consensus 60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~ 139 (297)
|..+..+..+|..+...|++++|+..|++++.++|+++ ..+..+|.+|...|++++|+..|++++++.|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------- 69 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKDP--------- 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------
Confidence 44567788899999999999999999999999998753 4556688889999999999999999888743
Q ss_pred hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC------CCcHH-HhHHHHHHHH
Q 022442 140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PDANK-ACNLGLCLIK 204 (297)
Q Consensus 140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~------P~~~~-~~nLg~~l~~ 204 (297)
+++.++.++|.+|..+|++++|+.+|+++++++ |++.. +..|+.+..+
T Consensus 70 -----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 70 -----------------NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred -----------------CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 566788899999999999999999999999998 88877 6777776654
No 91
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.69 E-value=1.1e-15 Score=148.09 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=133.0
Q ss_pred chhhhhhhhh-cCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 14 KKEDLFHVIH-KVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 14 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
+..+.|.... ..|....++..++.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|++.|++++++
T Consensus 7 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp --------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445554433 446666688888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442 93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 172 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~ 172 (297)
+|++. .....+|.+|...|++++|+..|++++++.| +++.++.++|.+|..+
T Consensus 87 ~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------------------~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 87 APEHP--GIALWLGHALEDAGQAEAAAAAYTRAHQLLP--------------------------EEPYITAQLLNWRRRL 138 (568)
T ss_dssp CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHT
T ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHh
Confidence 99853 4566689999999999999999999999854 5677899999999999
Q ss_pred ---CChHHHHHHHHHHHHhCCCcHH-HhHHH
Q 022442 173 ---TNFMAAEVVYQKAQMIDPDANK-ACNLG 199 (297)
Q Consensus 173 ---g~~~eA~~~y~~Al~~~P~~~~-~~nLg 199 (297)
|++++|+..|+++++.+|++.. +..|+
T Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 139 CDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp TCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred hccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999886 66666
No 92
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.69 E-value=4.1e-15 Score=132.18 Aligned_cols=168 Identities=14% Similarity=0.116 Sum_probs=134.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHHHHHH
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNV 104 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~l~~~ 104 (297)
....++..|++++|+..+.++++..|... ..+..+|.++...|++++|+..+++++...+.. ......+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34456789999999999999999877644 346678999999999999999999999876531 11345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
+|.+|...|++++|+..|++++++..... . .... ...+++|+|.+|..+|++++|+.+|++
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~----~--------~~~~-------~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALH----D--------NEEF-------DVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSC----C--------CHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcC----c--------cccc-------hHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999997632000 0 0000 125899999999999999999999999
Q ss_pred HHHhCCCc------HH-HhHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 022442 185 AQMIDPDA------NK-ACNLGLCLIKRTRYNEA-RSVLEDVLYG 221 (297)
Q Consensus 185 Al~~~P~~------~~-~~nLg~~l~~~g~~~eA-~~~~~~al~~ 221 (297)
++++.++. .. ++++|.+|..+|++++| ..+|++++..
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 99986531 34 78999999999999999 7889999875
No 93
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.68 E-value=6.9e-17 Score=135.24 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=122.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH--------------HHHHH
Q 022442 38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--------------ESLDN 103 (297)
Q Consensus 38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~--------------~~l~~ 103 (297)
.....|++++|.+.+.......+.....+..+|.++...|++++|+..|++++.+.|.+.. ..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3445678888888887777766777888999999999999999999999999999886430 14566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
.+|.+|...|++++|+..+++++++. |+++.+++++|.+|..+|++++|+.+|+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID--------------------------KNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 68999999999999999999999874 3567789999999999999999999999
Q ss_pred HHHHhCCCcHH-HhHHHHHHHHcCCHHHHH-HHHHHHHh
Q 022442 184 KAQMIDPDANK-ACNLGLCLIKRTRYNEAR-SVLEDVLY 220 (297)
Q Consensus 184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~-~~~~~al~ 220 (297)
++++++|++.. +.+++.++..+|+.+++. ..|.+++.
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 889999999999998888 55565554
No 94
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.68 E-value=2.4e-15 Score=126.12 Aligned_cols=149 Identities=16% Similarity=0.086 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
.++..+..+...|++++|+..|++++ +| .+.++.++|.++..+|++++|+..|++++.++|++. .....+|.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHHH
Confidence 35667788889999999999999996 44 678999999999999999999999999999999853 45666899999
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
..|++++|+..|++++++.|....... ....+.+.|..+.++.++|.+|..+|++++|+.+|+++++++|
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHH----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999998764321100 0001123456678999999999999999999999999999999
Q ss_pred CcHH
Q 022442 191 DANK 194 (297)
Q Consensus 191 ~~~~ 194 (297)
++..
T Consensus 153 ~~~~ 156 (213)
T 1hh8_A 153 EPRH 156 (213)
T ss_dssp SGGG
T ss_pred cccc
Confidence 8753
No 95
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.68 E-value=1.9e-15 Score=121.02 Aligned_cols=132 Identities=15% Similarity=-0.002 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
.+..+..+|.++...|++++|+..|++++..+|.+. .....+|.++...|++++|+..+++++++.|
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----------- 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDK----------- 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------
Confidence 356788999999999999999999999999999753 4556689999999999999999999998743
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-Hh--HHHHHHHHcCCHHHHHHHHHHH
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC--NLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~--nLg~~l~~~g~~~eA~~~~~~a 218 (297)
+++.++.++|.+|..+|++++|+.+|+++++++|++.. +. .++..+...|++++|+..++++
T Consensus 79 ---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 79 ---------------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 46678999999999999999999999999999999987 64 4555588999999999999887
Q ss_pred Hhc
Q 022442 219 LYG 221 (297)
Q Consensus 219 l~~ 221 (297)
...
T Consensus 144 ~~~ 146 (166)
T 1a17_A 144 RSV 146 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 96
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.68 E-value=6.1e-15 Score=123.67 Aligned_cols=127 Identities=12% Similarity=0.062 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 143 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~ 143 (297)
..++++|.++...|++++|+..|++++ .|. ......+|.+|...|++++|+..|++++++.|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRDK------------- 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------
Confidence 347789999999999999999999985 443 24566689999999999999999999999843
Q ss_pred hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH----------------H-HhHHHHHHHHcC
Q 022442 144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----------------K-ACNLGLCLIKRT 206 (297)
Q Consensus 144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~----------------~-~~nLg~~l~~~g 206 (297)
+++.++.++|.+|..+|++++|+.+|++++++.|++. . ++++|.++..+|
T Consensus 69 -------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 135 (213)
T 1hh8_A 69 -------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135 (213)
T ss_dssp -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred -------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence 5667999999999999999999999999999888766 7 899999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 022442 207 RYNEARSVLEDVLYG 221 (297)
Q Consensus 207 ~~~eA~~~~~~al~~ 221 (297)
++++|+..|++++..
T Consensus 136 ~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 136 EWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999997
No 97
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.68 E-value=2.8e-15 Score=133.21 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=134.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--ch--HHHHHHHH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDS------ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVL 105 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~--~~~l~~~L 105 (297)
...++..|++++|+..+++++...+..+. .+..+|.++...|++++|+..+++++...+. +. .....+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34567889999999999999998776655 2345899999999999999999999987553 11 12356779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA 185 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A 185 (297)
|.+|..+|++++|+.+|+++++...... .. .+....+++|+|.+|..+|++++|+.+|+++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~-------------~~------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALH-------------DN------EEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSS-------------CC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------cc------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999998632100 00 0123458999999999999999999999999
Q ss_pred HHhCCCc------HH-HhHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 022442 186 QMIDPDA------NK-ACNLGLCLIKRTR-YNEARSVLEDVLYG 221 (297)
Q Consensus 186 l~~~P~~------~~-~~nLg~~l~~~g~-~~eA~~~~~~al~~ 221 (297)
+++.++. .. ++++|.+|..+|+ +++|+..|++++..
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9987543 45 7899999999995 79999999999975
No 98
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=1e-15 Score=140.86 Aligned_cols=189 Identities=21% Similarity=0.186 Sum_probs=144.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhC------CcchHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLC------SKQSQESL 101 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~------P~~~~~~l 101 (297)
+...+..+...|++++|+.+|+++++.+|+++ .++..+|.++..+|++++|+..+++++.+. |. ....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG--EAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--HHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH--HHHH
Confidence 45566778899999999999999999999976 589999999999999999999999998873 32 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhch-----hh--hhc--CcchhHHhh-----------------hhhh---HH-
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ-----GE--AFN--GKPTKTARS-----------------HGKK---FQ- 151 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~-----~~--~~~--~~~~~~~~~-----------------~~~~---~~- 151 (297)
...+|.+|...|++++|+..|++++++.+. .. .+. +........ .... +.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 667899999999999999999999998431 11 111 100000011 1110 11
Q ss_pred -Hhc------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 152 -VSV------RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 152 -~~l------~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
+.+ .+....++.++|.+|..+|++++|+.+|++++++.|+.. . +.++|.+|..+|++++|+.++++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 111 133456889999999999999999999999999987543 3 46899999999999999999999
Q ss_pred HHhcC
Q 022442 218 VLYGR 222 (297)
Q Consensus 218 al~~~ 222 (297)
++...
T Consensus 289 al~~~ 293 (411)
T 4a1s_A 289 TLALA 293 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99983
No 99
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-15 Score=116.44 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=108.3
Q ss_pred cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442 58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~ 137 (297)
..|....++..+|.++...|++++|+..|++++...|.+. .....+|.+|...|++++|+..+++++++.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------- 81 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLEP------- 81 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-------
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------
Confidence 3567888999999999999999999999999999999753 4556689999999999999999999998743
Q ss_pred cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCC
Q 022442 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR 207 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~ 207 (297)
+++.++.++|.+|..+|++++|+.+|++++.++|++.. +.+++.++..+|+
T Consensus 82 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 -------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999988 8899999988775
No 100
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=3.8e-16 Score=143.70 Aligned_cols=209 Identities=17% Similarity=0.156 Sum_probs=156.9
Q ss_pred ccchhhhhhhhhcCCCCC-----cHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCChH
Q 022442 12 SSKKEDLFHVIHKVPAGD-----GPYVRAKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSE 80 (297)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~~~ 80 (297)
..+....|....+..+.+ ..+...+.++...|++++|+.+|++++.. +|....++..+|.++..+|+++
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 143 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH
Confidence 344555665555553333 25777788889999999999999999987 6778889999999999999999
Q ss_pred HHHHHHHHHHhhCCc----chHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhhchh-----h-
Q 022442 81 EAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGK-----------------VEEQIEMLKRKLRLIYQG-----E- 133 (297)
Q Consensus 81 eAi~~~~~al~~~P~----~~~~~l~~~L~~ly~~~g~-----------------~~eAi~~~~~al~~~p~~-----~- 133 (297)
+|+..|++++.+.+. .........+|.+|...|+ +++|+..|++++++.+.. .
T Consensus 144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~ 223 (411)
T 4a1s_A 144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999887432 1123456678999999999 999999999999875311 0
Q ss_pred -hhcCcchhHHhhhhh------hHH--HhcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH----
Q 022442 134 -AFNGKPTKTARSHGK------KFQ--VSVRQET------SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK---- 194 (297)
Q Consensus 134 -~~~~~~~~~~~~~~~------~~~--~~l~p~~------~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~---- 194 (297)
.+. .........++ .+. +.+.|+. ..++.++|.+|..+|++++|+.+|++++++.|+...
T Consensus 224 ~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 224 RACG-NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH-HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 110 00000000010 111 2222222 238899999999999999999999999999998883
Q ss_pred ---HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 195 ---ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 195 ---~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.++|.++..+|++++|+.++++++..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357999999999999999999999997
No 101
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.67 E-value=6e-16 Score=126.74 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=84.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH-HHHcCCH--HH
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGKV--EE 117 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l-y~~~g~~--~e 117 (297)
..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++. .....+|.+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCcchHH
Confidence 456777777777777777777777777777777777777777777777777777642 334446666 6667776 77
Q ss_pred HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
|+..|++++++.| +++.++.++|.+|..+|++++|+.+|+++++++|++..
T Consensus 100 A~~~~~~al~~~p--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 100 TRAMIDKALALDS--------------------------NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHhCC--------------------------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 7777777776533 34556677777777777777777777777777776653
No 102
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=142.95 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDN 103 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~ 103 (297)
++..+..+...|++++|+.+|++++..+|+++ .++..+|.++...|++++|+..+++++.+.+. ........
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34444444555555555555555555544442 34445555555555555555555554433210 00112333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
.+|.+|...|++++|+..+++++++.
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~ 117 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDIS 117 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34555555555555555555555543
No 103
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.67 E-value=1.4e-15 Score=123.39 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=91.3
Q ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442 59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 138 (297)
Q Consensus 59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 138 (297)
++..+.++..+|.++...|++++|+..|++++.++|+++ .++..+|.+|...|++++|+..|++++++.|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------- 76 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVVDP-------- 76 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------
Confidence 455677788888888888888888888888888888743 4555678888888888888888888888743
Q ss_pred chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442 139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC 201 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~ 201 (297)
+++.+++++|.+|..+|++++|+.+|+++++++|++.. +++++..
T Consensus 77 ------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 77 ------------------KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45678888888888888888888888888888888876 6666554
No 104
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.66 E-value=1.6e-15 Score=115.93 Aligned_cols=124 Identities=18% Similarity=0.167 Sum_probs=110.0
Q ss_pred HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc
Q 022442 57 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN 136 (297)
Q Consensus 57 ~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~ 136 (297)
..+|..+.++..+|.++...|++++|+..+++++...|++. .....+|.++...|++++|+..++++++..|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------ 77 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICIDP------ 77 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhcCc------
Confidence 34566778899999999999999999999999999999753 4556689999999999999999999998743
Q ss_pred CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH
Q 022442 137 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY 208 (297)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~ 208 (297)
+++.++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.++..+|++
T Consensus 78 --------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 --------------------AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred --------------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999998 89999999998875
No 105
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.5e-15 Score=138.54 Aligned_cols=209 Identities=15% Similarity=0.109 Sum_probs=142.6
Q ss_pred ccccchhhhhhhhhcCCCCC-----cHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCC
Q 022442 10 IFSSKKEDLFHVIHKVPAGD-----GPYVRAKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDR 78 (297)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~ 78 (297)
+........|....+..+.+ ..+...+.++...|++++|+.+|++++.. .|....++..+|.++..+|+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 33445556675555543333 35667788889999999999999999886 45567889999999999999
Q ss_pred hHHHHHHHHHHHhhCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHH--
Q 022442 79 SEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV-- 152 (297)
Q Consensus 79 ~~eAi~~~~~al~~~P~~----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-- 152 (297)
+++|+..+++++.+.|.. ........+|.+|...|++.++... ..+...+... .. ..............+
T Consensus 103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~~~~~~~~a-~~-~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP--QDVGEFPEEV-RD-ALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC---------CCCCHHH-HH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc--chhhhhhhhH-HH-HHHHHHHHHHHHHHHHH
Confidence 999999999999987752 1233567777777777766554431 1111111000 00 000000000011111
Q ss_pred h--cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 153 S--VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 153 ~--l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
. -.|....++.++|.+|..+|++++|+.+|++++++.|+.. . +.++|.++..+|++++|+.++++++...
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 1234456899999999999999999999999999976542 3 5689999999999999999999999984
No 106
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.66 E-value=2.2e-15 Score=124.96 Aligned_cols=162 Identities=12% Similarity=0.023 Sum_probs=126.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHHHHHHHcCCH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGKV 115 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~~ly~~~g~~ 115 (297)
+..|++++|...++......+....++..+|.++..+|++++|+..+++++.+... .........+|.+|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 56899999999665555544478899999999999999999999999999874321 11234556789999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhcCcchhHHhhhh-hhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC--c
Q 022442 116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG-KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD--A 192 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~--~ 192 (297)
++|+..+++++.+... .+ ... ....++.++|.+|..+|++++|+.+|++++++.+. +
T Consensus 83 ~~A~~~~~~al~~~~~--------------~~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 83 DAARRCFLEERELLAS--------------LPEDPL------AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp HHHHHHHHHHHHHHHH--------------SCCCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH--------------cCccHH------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998420 00 000 12357899999999999999999999999987432 2
Q ss_pred H----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 193 N----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 193 ~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
. . +.++|.++..+|++++|+..+++++..
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2 2 468999999999999999999999975
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.66 E-value=4.9e-15 Score=126.71 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
.+.+++.+|..+...|++++|+..|++++...|++. .......+|.+|...|++++|+..|+++++..|...
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~------- 75 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------- 75 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-------
Confidence 457889999999999999999999999999999742 224556689999999999999999999999876321
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH------------------CCChHHHHHHHHHHHHhCCCcHH-H------
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQ------------------KTNFMAAEVVYQKAQMIDPDANK-A------ 195 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~------------------~g~~~eA~~~y~~Al~~~P~~~~-~------ 195 (297)
..+.+++.+|.+|.. +|++++|+..|+++++.+|+++. +
T Consensus 76 ----------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 76 ----------------NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp ----------------THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 112356666666654 78999999999999999999874 3
Q ss_pred -----------hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 196 -----------CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 196 -----------~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+|.+|..+|++++|+..|++++..
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 57899999999999999999999997
No 108
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.66 E-value=1.8e-15 Score=123.88 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=108.2
Q ss_pred HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHH
Q 022442 73 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV 152 (297)
Q Consensus 73 l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
+...|++++|+..+++++..+|.+. .....+|.+|...|++++|+..|++++++.|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------------------- 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLRG---------------------- 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------------------
Confidence 4567999999999999999999853 4566689999999999999999999999854
Q ss_pred hcCCCcHHHHHHHHHH-HHHCCCh--HHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 022442 153 SVRQETSRLLGNLAWA-YMQKTNF--MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG 225 (297)
Q Consensus 153 ~l~p~~~~~l~nLg~~-y~~~g~~--~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~ 225 (297)
+++.++.++|.+ |...|++ ++|+.+|+++++++|++.. +.++|.++..+|++++|+..|++++...+.+
T Consensus 76 ----~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 76 ----ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp ----SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred ----CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 466789999999 8899999 9999999999999999998 9999999999999999999999999984433
No 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.65 E-value=9.1e-17 Score=152.66 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-------------HHHHHHHHHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDLY 109 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-------------~~~l~~~L~~ly 109 (297)
+++++|+..|++++..+|..+.++.++|.++..+|++++|+..|++++.++|.+. ...+++.+|.+|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888889999999999999999999999999999999999999999999742 034666799999
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
.++|++++|+..|+++|++.| +++.+++++|.+|..+|++++|+..|++|++++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p--------------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDS--------------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCC--------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999854 567899999999999999999999999999999
Q ss_pred CCcHH-HhHHHHHHHHcCCHHHHHH-HHHHHHh
Q 022442 190 PDANK-ACNLGLCLIKRTRYNEARS-VLEDVLY 220 (297)
Q Consensus 190 P~~~~-~~nLg~~l~~~g~~~eA~~-~~~~al~ 220 (297)
|++.. +.+|+.++..+|++++|.. .|++++.
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 9999999999999998874 4555544
No 110
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.65 E-value=4.2e-15 Score=131.01 Aligned_cols=191 Identities=18% Similarity=0.180 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLD 102 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~ 102 (297)
.++..+..+...|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+..+++++.+.+. .......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 35556778889999999999999999999997 467889999999999999999999998876331 1123456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-------hhc--CcchhHHhh--------------------hhhh---H
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-------AFN--GKPTKTARS--------------------HGKK---F 150 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-------~~~--~~~~~~~~~--------------------~~~~---~ 150 (297)
..+|.+|...|++++|+..+++++++.+... .+. +........ .... +
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6789999999999999999999999865311 111 000000000 1110 1
Q ss_pred H--Hhc------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHH
Q 022442 151 Q--VSV------RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVL 215 (297)
Q Consensus 151 ~--~~l------~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~ 215 (297)
. +.+ .+....++.++|.+|..+|++++|+.+|++++++.|... . +.++|.++...|++++|+..+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 111 233455788899999999999999999999999976432 3 467899999999999999999
Q ss_pred HHHHhc
Q 022442 216 EDVLYG 221 (297)
Q Consensus 216 ~~al~~ 221 (297)
++++..
T Consensus 247 ~~al~~ 252 (338)
T 3ro2_A 247 KKTLLL 252 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.65 E-value=2.3e-15 Score=117.80 Aligned_cols=117 Identities=12% Similarity=0.054 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
+.+.++.+||.++.++|++++|+..|++++.++|+++ ..++.+|.+|..+|++++|+..++++|++.|.....
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----- 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD----- 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-----
Confidence 3456788999999999999999999999999999853 456668999999999999999999999997632100
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL 198 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL 198 (297)
+ +..+.++.++|.+|..+|++++|+.+|+++|...|+......|
T Consensus 79 -----~---------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 79 -----Y---------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp -----H---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred -----h---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 0 0123588999999999999999999999999999975434333
No 112
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=4.2e-15 Score=136.51 Aligned_cols=168 Identities=10% Similarity=-0.031 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAG-------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQE 99 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~ 99 (297)
++...+.++...|++++|+.++++|+... +....++.++|.++..+|++++|+..|++++.+.|.. ...
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 57778888999999999999999999963 3345689999999999999999999999999886631 112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
.....+|.+|..+|++++|+..|++++++.... . ..|..+.++.++|.+|..+|++++|+
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--------------~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--------------N------ILPSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------T------CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--------------c------cchhHHHHHHHHHHHHHHCCCHHHHH
Confidence 345669999999999999999999999974210 0 01345678999999999999999999
Q ss_pred HHHHHHHHhCC-----CcHH-HhHHHHHHHHcCC---HHHHHHHHHHH
Q 022442 180 VVYQKAQMIDP-----DANK-ACNLGLCLIKRTR---YNEARSVLEDV 218 (297)
Q Consensus 180 ~~y~~Al~~~P-----~~~~-~~nLg~~l~~~g~---~~eA~~~~~~a 218 (297)
.+|++++++.+ .... +.+||.++...|+ +++|+..+++.
T Consensus 285 ~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 285 EYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999999843 3333 5678999999999 77777777665
No 113
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=1.3e-14 Score=139.41 Aligned_cols=177 Identities=10% Similarity=0.015 Sum_probs=147.8
Q ss_pred hh-hhhhcCCCCCcHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCChHH
Q 022442 18 LF-HVIHKVPAGDGPYVRAKHAQLV-------QKDPE-------AAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEE 81 (297)
Q Consensus 18 ~~-~~~~~~~~~~~~~~~~~~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~a~~~Lg~~l~~~g~~~e 81 (297)
.| +.+...|..+..+...+.+... .|+++ +|+..|++|++ ..|+...+|..+|.++...|++++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 45 4455557666666666666654 69987 89999999997 899999999999999999999999
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442 82 AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161 (297)
Q Consensus 82 Ai~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 161 (297)
|+.+|++++...|.+. ..++..++.++.+.|++++|+.+|+++++..| ....+
T Consensus 340 A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--------------------------~~~~~ 392 (530)
T 2ooe_A 340 VHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--------------------------TRHHV 392 (530)
T ss_dssp HHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--------------------------CCTHH
T ss_pred HHHHHHHHhCccccCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--------------------------CchHH
Confidence 9999999999999743 23556678888999999999999999998743 12233
Q ss_pred HHHHHHH-HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 162 LGNLAWA-YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 162 l~nLg~~-y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+...+.+ +...|++++|..+|+++++..|+++. |.+++.++...|++++|..+|++++..
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 4444444 45699999999999999999999998 999999999999999999999999986
No 114
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.64 E-value=4.3e-15 Score=121.05 Aligned_cols=125 Identities=17% Similarity=0.007 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
.....|..+...|++++|+..|+++|++.|....- . .+...|.++.+|.|+|.++..+|+|++|+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------------~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~ 78 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------------E--AFDHAGFDAFCHAGLAEALAGLRSFDEALH 78 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------------S--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------------h--hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 34457888999999999999999999998731000 0 000112245599999999999999999999
Q ss_pred HHHHHHHh-------CCCcHH-H----hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 022442 181 VYQKAQMI-------DPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL 239 (297)
Q Consensus 181 ~y~~Al~~-------~P~~~~-~----~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l 239 (297)
+|.+||++ +|++.. | +++|.+|..+|++++|+..|+++++..|.+....+.++.+....
T Consensus 79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99999999 999998 9 99999999999999999999999998444444344444444433
No 115
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=1.7e-15 Score=133.61 Aligned_cols=209 Identities=18% Similarity=0.201 Sum_probs=155.0
Q ss_pred ccchhhhhhhhhcCCCCC-----cHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCChH
Q 022442 12 SSKKEDLFHVIHKVPAGD-----GPYVRAKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSE 80 (297)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~~~ 80 (297)
.......|....+..+.+ ..+...+.++...|++++|+.++++++.. .|....++..+|.++..+|+++
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 100 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 100 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence 344555665444443333 34667788889999999999999999986 5566788999999999999999
Q ss_pred HHHHHHHHHHhhCCcc----hHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhhchh----
Q 022442 81 EAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGK--------------------VEEQIEMLKRKLRLIYQG---- 132 (297)
Q Consensus 81 eAi~~~~~al~~~P~~----~~~~l~~~L~~ly~~~g~--------------------~~eAi~~~~~al~~~p~~---- 132 (297)
+|+..+++++.+.|.. ........+|.+|...|+ +++|+..+++++.+.+..
T Consensus 101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~ 180 (338)
T 3ro2_A 101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 9999999998876631 112355678999999999 999999999999874311
Q ss_pred -h--hhcCcchhHHhhhh---h---hHH--HhcCC------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-
Q 022442 133 -E--AFNGKPTKTARSHG---K---KFQ--VSVRQ------ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK- 194 (297)
Q Consensus 133 -~--~~~~~~~~~~~~~~---~---~~~--~~l~p------~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~- 194 (297)
. .+. .........+ . .+. +.+.+ ....++.++|.+|..+|++++|+.+|++++.+.|+...
T Consensus 181 ~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 181 AQGRAFG-NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 0 110 0000000000 0 111 12211 12348899999999999999999999999999998882
Q ss_pred ------HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 195 ------ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 195 ------~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.++|.++..+|++++|+.++++++..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 357999999999999999999999997
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.64 E-value=1.1e-14 Score=129.47 Aligned_cols=181 Identities=12% Similarity=-0.009 Sum_probs=135.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHH-------HHHHHHCCChHHHHHHHHHHHhhCCcc----hH-----------
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDM-------AVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQ----------- 98 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~L-------g~~l~~~g~~~eAi~~~~~al~~~P~~----~~----------- 98 (297)
..+|+..|...|.++++++|...++|..+ +.++...+++.+++..+++.+.+.|.. ..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 58999999999999999999999999999 899999999999999999988887752 11
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhc-CcchhHHhhhhhh---HHHhcC-CCc---HHHHHHH
Q 022442 99 ----ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFN-GKPTKTARSHGKK---FQVSVR-QET---SRLLGNL 165 (297)
Q Consensus 99 ----~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~-~~~~~~~~~~~~~---~~~~l~-p~~---~~~l~nL 165 (297)
..+...++.+|...|++++|.+.|..++...|... .|. +...-......+. +.-.+. |+. ..++++|
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 23444567788889999999999988877665332 111 0000000000110 110111 111 3589999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhC--CC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 166 AWAYMQKTNFMAAEVVYQKAQMID--PD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 166 g~~y~~~g~~~eA~~~y~~Al~~~--P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|.++..+|++++|+.+|++++.-. |. .+. ++++|.++.++|+.++|...|++++..
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999998654 66 556 899999999999999999999999997
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.64 E-value=2e-15 Score=124.13 Aligned_cols=133 Identities=16% Similarity=0.098 Sum_probs=110.0
Q ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442 60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 139 (297)
Q Consensus 60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~ 139 (297)
|...+.+..+|.++...|++++|+..|++++..+|++. .....+|.+|...|++++|+..|++++...|
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------- 71 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG--DVKLAKADCLLETKQFELAQELLATIPLEYQ--------- 71 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH--HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---------
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---------
Confidence 44445688999999999999999999999999999853 4566689999999999999999999888754
Q ss_pred hhHHhhhhhhHHHhcCCCcHHHHHHHHHHH-HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 140 TKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y-~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
++..+..++.+. ...+...+|+.+|+++++++|+++. ++++|.++...|++++|+..|++
T Consensus 72 ------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 72 ------------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 223334444342 3334556789999999999999998 99999999999999999999999
Q ss_pred HHhc
Q 022442 218 VLYG 221 (297)
Q Consensus 218 al~~ 221 (297)
++..
T Consensus 134 ~l~~ 137 (176)
T 2r5s_A 134 ILKV 137 (176)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9997
No 118
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.63 E-value=3.6e-14 Score=130.28 Aligned_cols=166 Identities=11% Similarity=0.081 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGD-------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQE 99 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~ 99 (297)
++...+.++...|+++.|+.++++|+...+ ....++.++|.++..+|++++|++.|++++.+.+. ....
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 577778889999999999999999998533 24668899999999999999999999999887442 1123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
...+.+|.+|..+|++++|+..|++++++.... ..|..+.++.++|.+|..+|++++|+
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------------------VPDLLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------------CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------------CChhHHHHHHHHHHHHHHCCCHHHHH
Confidence 455679999999999999999999999973210 12334568999999999999999999
Q ss_pred HHHHHHHHhCCC-----cHH-HhHHHHHHHHcCC---HHHHHHHHHH
Q 022442 180 VVYQKAQMIDPD-----ANK-ACNLGLCLIKRTR---YNEARSVLED 217 (297)
Q Consensus 180 ~~y~~Al~~~P~-----~~~-~~nLg~~l~~~g~---~~eA~~~~~~ 217 (297)
.+|++++++.+. ... ...|+.++...|+ +.+|+..+++
T Consensus 282 ~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 282 QFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999998543 222 3344555555555 4444444443
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.63 E-value=2.3e-14 Score=108.49 Aligned_cols=120 Identities=25% Similarity=0.235 Sum_probs=103.4
Q ss_pred CCCh-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442 59 GDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137 (297)
Q Consensus 59 ~p~~-~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~ 137 (297)
+|.. ..+++.+|.++...|++++|+..+++++...|.+. .....+|.++...|++++|+..++++++..|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------- 74 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDP------- 74 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------
Confidence 4444 77899999999999999999999999999999743 4556689999999999999999999998743
Q ss_pred cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT 206 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g 206 (297)
+++.++.++|.+|...|++++|+.+|++++.++|+++. +.++|.++..+|
T Consensus 75 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 75 -------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred -------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 45668899999999999999999999999999999998 889999987765
No 120
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.61 E-value=3.4e-15 Score=121.60 Aligned_cols=120 Identities=10% Similarity=-0.030 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-------ch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-------QS---QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 132 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-------~~---~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~ 132 (297)
++.+.++|..+.+.|++++|+..|++++.++|+ +. ....++++|.++..+|++++|+..|+++|++..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n-- 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN-- 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh--
Confidence 456788999999999999999999999999997 21 112566789999999999999999999999721
Q ss_pred hhhcCcchhHHhhhhhhHHHhcCCCcHHHH----HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442 133 EAFNGKPTKTARSHGKKFQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC 201 (297)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l----~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~ 201 (297)
-..+++|+++.+| +++|.+|..+|++++|+.+|++|++++|++.. .-.+..+
T Consensus 89 -----------------~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 89 -----------------RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp -----------------HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred -----------------ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 0124567788899 99999999999999999999999999999875 4444433
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.61 E-value=3.4e-14 Score=113.65 Aligned_cols=130 Identities=11% Similarity=-0.019 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
.+...+..+...|++++|+..|++++..+|.++.++.++|.++..+|++++|+..+++++..+|.+. .....+|.+|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 4666777888999999999999999999999999999999999999999999999999999999853 45566899999
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH--HHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL--GNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l--~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
..|++++|+..|++++++.| ++..++ ..++..+...|++++|+..++++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p--------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999855 334455 44555588999999999999998765
No 122
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.61 E-value=1.2e-14 Score=113.18 Aligned_cols=106 Identities=13% Similarity=-0.004 Sum_probs=81.4
Q ss_pred cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442 58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~ 137 (297)
.+|..+.++..+|.++...|++++|+..|++++..+|++. .....+|.+|...|++++|+..|++++++.|
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------- 74 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDG------- 74 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------
Confidence 4567777888888888888888888888888888888743 3555578888888888888888888887643
Q ss_pred cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~ 191 (297)
+++.++.++|.+|..+|++++|+.+|+++++++|+
T Consensus 75 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 -------------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 45667888888888888888888888888888777
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.8e-14 Score=110.27 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
....+|..+...|++++|+..|++++++.| +++.++.++|.+|..+|++++|+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------~~~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--------------------------EDARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------------------CChHHHHHHHHHHHHhcCHHHHHH
Confidence 445589999999999999999999999854 567899999999999999999999
Q ss_pred HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.|+++++++|+++. ++++|.++..+|++++|+..|++++..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 99999999999998 999999999999999999999999987
No 124
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.60 E-value=5.9e-14 Score=127.93 Aligned_cols=172 Identities=12% Similarity=0.001 Sum_probs=138.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--h--HHHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S--QESLD 102 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~--~~~l~ 102 (297)
....+.+++..|++++|+.++++++...|... .++..+|.++..+|++++|+..+++++.+.|.. . .....
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33445677789999999999999999776543 368899999999999999999999999877642 1 11234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
..+|.++...|++++|+..|++++++.+.. +.. -.|....++.++|.+|..+|++++|+.+|
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~--------------~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQ--------------HLE----QLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCT----TSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------------ccc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 568999999999999999999999985310 000 00123457889999999999999999999
Q ss_pred HHHHHhCCCc-----HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 183 QKAQMIDPDA-----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 183 ~~Al~~~P~~-----~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++++.|.. .. +.++|.++...|++++|..++++++..
T Consensus 159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999998753 23 678999999999999999999999865
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=5.9e-14 Score=113.66 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
.....+|.++...|++++|+..|++++++.| +++.++.++|.+|..+|++++|+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------~~~~~~~~l~~~~~~~g~~~~A~ 65 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP--------------------------ANPIYLSNRAAAYSASGQHEKAA 65 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------cCHHHHHHHHHHHHHccCHHHHH
Confidence 4556689999999999999999999999854 56789999999999999999999
Q ss_pred HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--chhhHHHHHHHHHHHH
Q 022442 180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE--DGRTRKRAEELLLELE 243 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~--~~~~~~~a~~~l~~~~ 243 (297)
.+|+++++++|++.. ++++|.+|..+|++++|+..|++++...+.... ....+..+...+.+..
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 999999999999999999999999998443333 2333444455555443
No 126
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.60 E-value=1.2e-14 Score=117.57 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhh--------CCcch--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGL--------CSKQS--------QESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~--------~P~~~--------~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
+..+..+|..+...|++++|+..|++++.+ .|.+. ...++..+|.+|...|++++|+..++++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888888888888888888888887 22110 12334445566666666666666666666
Q ss_pred HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-H-HhHHHHHHH
Q 022442 127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLI 203 (297)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~ 203 (297)
++. |+++.+++++|.+|..+|++++|+..|+++++++|+++ . ...|+.+..
T Consensus 91 ~~~--------------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 91 KRE--------------------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hcC--------------------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 553 23445566666666666666666666666666666655 3 334444443
No 127
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=1.2e-14 Score=112.89 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++.++.++|.++..+|++++|+.+|+++++++|+++. +.+||.+|..+|++++|+..|++++..
T Consensus 50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 50 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555554 445555555555555555555555543
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.58 E-value=9.5e-14 Score=104.09 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
.+.+++.+|.++...|++++|+..|++++...|.+. .....+|.+|...|++++|+..++++++..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------- 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP----------- 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----------
Confidence 456788899999999999999999999999998743 3555688889999999999999999888743
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 202 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l 202 (297)
+++.++.++|.+|..+|++++|+.+|+++++++|+++. +..++.+.
T Consensus 70 ---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 ---------------DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 45678899999999999999999999999999999887 77777764
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=2.5e-14 Score=121.53 Aligned_cols=141 Identities=12% Similarity=-0.033 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC----CHHHHHHH
Q 022442 46 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG----KVEEQIEM 121 (297)
Q Consensus 46 ~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g----~~~eAi~~ 121 (297)
.+|+.+|+++.+. .++.++++||.++...+++++|+..|+++...+.. ...+.||.+|.. | ++++|+..
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~----~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG----DALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH----HHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4588999999986 78899999999999999999999999999887532 345568888888 7 99999999
Q ss_pred HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCC--cHH-
Q 022442 122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPD--ANK- 194 (297)
Q Consensus 122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~--~~~- 194 (297)
|+++++. .++.++++||.+|.. .+++++|+.+|++|++..|. ++.
T Consensus 76 ~~~A~~~----------------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 76 AEKAVEA----------------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp HHHHHHT----------------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred HHHHHHC----------------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 9999764 356789999999998 99999999999999999994 466
Q ss_pred HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442 195 ACNLGLCLIK----RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 195 ~~nLg~~l~~----~g~~~eA~~~~~~al~~ 221 (297)
+++||.+|.. .+++++|+.+|++++..
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 8999999999 88999999999999985
No 130
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.58 E-value=2.1e-14 Score=111.42 Aligned_cols=94 Identities=17% Similarity=0.022 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442 65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD-------NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137 (297)
Q Consensus 65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~-------~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~ 137 (297)
.++.+|.++.+.|++++|+..|++++. .. ..+|.++...|++++|+..|++++++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~---------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ---------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH---------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 366777777777777777777766552 34 246777777777777777777777764
Q ss_pred cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
|+++.++.+||.+|..+|++++|+.+|+++++++|++.
T Consensus 82 ------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 82 ------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 45667888888888888888888888888888887764
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=5.1e-14 Score=128.29 Aligned_cols=133 Identities=12% Similarity=0.000 Sum_probs=118.6
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442 28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---------------DSALKDMAVVMKQLDRSEEAIEAIKSFRGL 92 (297)
Q Consensus 28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~ 92 (297)
...++...+.++...|++++|+..|++++.++|+. ..++.++|.++..+|++++|+..|++++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34467777888999999999999999999999998 689999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442 93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 172 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~ 172 (297)
+|++. ..++.+|.+|..+|++++|+..|++++++. |+++.++.++|.++..+
T Consensus 226 ~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------------------------P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 226 DSNNE--KGLSRRGEAHLAVNDFELARADFQKVLQLY--------------------------PNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------SSCHHHHHHHHHHHHHH
T ss_pred CCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHH
Confidence 99853 456668999999999999999999999985 45677999999999999
Q ss_pred CChHHH-HHHHHHHHHh
Q 022442 173 TNFMAA-EVVYQKAQMI 188 (297)
Q Consensus 173 g~~~eA-~~~y~~Al~~ 188 (297)
|++++| ...|++++..
T Consensus 278 ~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 278 RRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999 5578887764
No 132
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.7e-14 Score=109.12 Aligned_cols=122 Identities=12% Similarity=-0.004 Sum_probs=101.9
Q ss_pred HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh
Q 022442 57 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF 135 (297)
Q Consensus 57 ~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~ 135 (297)
..+|.....+..+|..+...|++++|+..|++++..+|++. .......+|.+|...|++++|+..+++++++.|
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----- 96 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG----- 96 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----
Confidence 34577888899999999999999999999999999998731 134556688999999999999999999988743
Q ss_pred cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH
Q 022442 136 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK 204 (297)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~ 204 (297)
+++.++.++|.+|..+|++++|+.+|+++++++|++.. +..++.+...
T Consensus 97 ---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 97 ---------------------GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ---------------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999999987 7777766543
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.56 E-value=1.4e-14 Score=128.71 Aligned_cols=106 Identities=13% Similarity=0.012 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442 60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 139 (297)
Q Consensus 60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~ 139 (297)
|..+.++..+|.++...|++++|+..|++++..+|++. .+...+|.+|...|++++|+..|++++++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------- 68 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELD---------- 68 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------
Confidence 56788999999999999999999999999999999853 466679999999999999999999999874
Q ss_pred hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
|+++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus 69 ----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 69 ----------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 45677999999999999999999999999999999763
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.56 E-value=7.4e-14 Score=109.15 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-----HHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-----QESLDNVL 105 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-----~~~l~~~L 105 (297)
++..+|..+...|++++|+.+|++|+.++|+++.++.++|.+|..+|++++|+..|++++.++|+.. ....+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 5667899999999999999999999999999999999999999999999999999999999988531 11345668
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
|.+|..+|++++|+..|+++|...|
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999855
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.55 E-value=5.2e-14 Score=126.15 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=109.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
...|.++..+|++++|+..|++++.+.+.. .....+..+|.+|..+|++++|+.+|++++++.+.
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~----------- 108 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE----------- 108 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-----------
Confidence 345789999999999999999998886631 12245566899999999999999999999998531
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc------HH-HhHHHHHHHHcCCHHHHHHHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEARSVL 215 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~------~~-~~nLg~~l~~~g~~~eA~~~~ 215 (297)
.++.. ..+.++.++|.+|.. |++++|+.+|++|+++.|+. .. +.++|.+|..+|++++|+.+|
T Consensus 109 ---~g~~~------~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 178 (307)
T 2ifu_A 109 ---NGTPD------TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL 178 (307)
T ss_dssp ---TTCHH------HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---cCCHH------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00000 023588999999999 99999999999999998753 24 679999999999999999999
Q ss_pred HHHHhc
Q 022442 216 EDVLYG 221 (297)
Q Consensus 216 ~~al~~ 221 (297)
++++..
T Consensus 179 ~~al~~ 184 (307)
T 2ifu_A 179 QKEKSM 184 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1.6e-14 Score=120.78 Aligned_cols=149 Identities=15% Similarity=0.014 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
+.+..+...+......|++++|.+.++......+.. ......+|.++...|++++|+..|++++++.|....+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-- 77 (198)
T 2fbn_A 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-- 77 (198)
T ss_dssp --------------------CCCSGGGCCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--
T ss_pred CCcccccchhhhhhhhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--
Confidence 445556778888899999999998887655444432 2344568999999999999999999999987632211100
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.. ......+ ...++.++|.+|..+|++++|+.+|++++.++|++.. ++++|.+|..+|++++|+..|++++
T Consensus 78 ~~-~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 IL-LDKKKNI-------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HH-HHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hH-HHHHHHH-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00 0000000 1368999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hc
Q 022442 220 YG 221 (297)
Q Consensus 220 ~~ 221 (297)
..
T Consensus 150 ~~ 151 (198)
T 2fbn_A 150 SL 151 (198)
T ss_dssp HH
T ss_pred HH
Confidence 97
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=7.9e-14 Score=107.17 Aligned_cols=120 Identities=10% Similarity=-0.006 Sum_probs=105.9
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442 27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI 106 (297)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~ 106 (297)
....++...+..+...|++++|+.+|++++..+|.+..++..+|.++..+|++++|+..+++++...|.+. .....+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHHHH
Confidence 33446778888899999999999999999999999999999999999999999999999999999999853 4556689
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN 174 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~ 174 (297)
.+|...|++++|+..|++++++.| ++..++..+|.++..+|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p--------------------------~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS--------------------------SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG--------------------------GGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC--------------------------CchHHHHHHHHHHHHhcC
Confidence 999999999999999999999854 344678899999988774
No 138
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.54 E-value=7.9e-13 Score=125.67 Aligned_cols=198 Identities=15% Similarity=0.097 Sum_probs=152.5
Q ss_pred hhhhhhhhhcCCCCCcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHH
Q 022442 15 KEDLFHVIHKVPAGDGPYVRAKHAQLV----QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAI 86 (297)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~ 86 (297)
....|....+. ....+.+.++.++.. .+++++|+.+|++++.. .++.++++||.++.. .+++++|+..|
T Consensus 206 A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 206 SAQWYRKSATS-GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 33445444444 345678888888876 89999999999999886 457889999999999 99999999999
Q ss_pred HHHHhhCCcchHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhchhhhhc-CcchhH---Hhhhh---hhHHHhc
Q 022442 87 KSFRGLCSKQSQESLDNVLIDLYKKC-----GKVEEQIEMLKRKLRLIYQGEAFN-GKPTKT---ARSHG---KKFQVSV 154 (297)
Q Consensus 87 ~~al~~~P~~~~~~l~~~L~~ly~~~-----g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~---~~~~~---~~~~~~l 154 (297)
+++...++. .....||.+|... +++++|+..|+++++..++...++ +..... ..... ..+...+
T Consensus 283 ~~a~~~~~~----~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 283 RKSAEQGNS----DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHTTTCH----HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCH----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 999877543 3445588899888 999999999999999865443332 111000 00011 1123355
Q ss_pred CCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442 155 RQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 155 ~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~ 221 (297)
+.+++.++++||.+|.. .+++++|+.+|++|++. +++. +++||.+|.. .+++++|..+|++++..
T Consensus 359 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 56789999999999999 89999999999999986 3566 8899999998 89999999999999986
No 139
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.54 E-value=1.1e-12 Score=118.34 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=108.7
Q ss_pred HHcCCH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH----HHc
Q 022442 40 LVQKDP-EAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY----KKC 112 (297)
Q Consensus 40 ~~~g~~-~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g--~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly----~~~ 112 (297)
...|.+ ++|+.++.++|.++|++..+|+..+.++..+| +++++++.+..++..+|++.. +.+..+.++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--IWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH--HHHHHHHHHHHHHHhc
Confidence 345554 68999999999999999999999999999999 999999999999999998532 333345555 666
Q ss_pred ---CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH--HHHHHHHHHHH
Q 022442 113 ---GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM--AAEVVYQKAQM 187 (297)
Q Consensus 113 ---g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~--eA~~~y~~Al~ 187 (297)
+++++++.++.++++.+|. +..++++.++++..+|+++ ++++++.++++
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk--------------------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK--------------------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 8999999999999998663 3345555555555555554 55555555555
Q ss_pred hCCCcHH-HhHHHHHHHHcCC------HHHHHHHHHHHHhc
Q 022442 188 IDPDANK-ACNLGLCLIKRTR------YNEARSVLEDVLYG 221 (297)
Q Consensus 188 ~~P~~~~-~~nLg~~l~~~g~------~~eA~~~~~~al~~ 221 (297)
.+|.|.. |.+.+.++...|+ +++++..+.+++..
T Consensus 175 ~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 175 TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence 5555554 5555555555544 55555555555544
No 140
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.54 E-value=1.3e-14 Score=118.08 Aligned_cols=106 Identities=17% Similarity=0.090 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM 121 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~ 121 (297)
.+.+++|+..|+++++++|+++++|.++|.++..+|+++.+..+.+ .+++|+..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~eAi~~ 68 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHHHHHH
Confidence 4567889999999999999999999999999988887765555321 37889999
Q ss_pred HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC-----------ChHHHHHHHHHHHHhCC
Q 022442 122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-----------NFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g-----------~~~eA~~~y~~Al~~~P 190 (297)
|+++|+++ |++++++++||.+|..+| ++++|+.+|++|++++|
T Consensus 69 le~AL~ld--------------------------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 69 FEEALLID--------------------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhC--------------------------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99988874 456778999999998875 89999999999999999
Q ss_pred CcHH-HhHHH
Q 022442 191 DANK-ACNLG 199 (297)
Q Consensus 191 ~~~~-~~nLg 199 (297)
++.. +.+|.
T Consensus 123 ~~~~y~~al~ 132 (158)
T 1zu2_A 123 DNTHYLKSLE 132 (158)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9876 44443
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.54 E-value=1.5e-13 Score=113.63 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=122.7
Q ss_pred hhhhhhhhhcCC-CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 15 KEDLFHVIHKVP-AGDGPYVRAKHAQLVQKDPEAAIVLFWKAIN------AGDRVDSALKDMAVVMKQLDRSEEAIEAIK 87 (297)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~ 87 (297)
....++.+...| ....++...+.++...|++++|+..|++++. ..|....++.++|.++..+|++++|+..++
T Consensus 11 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 90 (203)
T 3gw4_A 11 AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFL 90 (203)
T ss_dssp HHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333333444444 2233677778889999999999999999999 556677889999999999999999999999
Q ss_pred HHHhh---CCcc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442 88 SFRGL---CSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL 162 (297)
Q Consensus 88 ~al~~---~P~~--~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l 162 (297)
+++.+ .|++ ........+|.++...|++++|+..+++++++.+.. +... ....++
T Consensus 91 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~------~~~~~~ 150 (203)
T 3gw4_A 91 EERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--------------DDQV------AIACAF 150 (203)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--------------TCHH------HHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--------------cchH------HHHHHH
Confidence 99887 4421 123445678999999999999999999999874310 0000 013468
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
.++|.+|..+|++++|+.+|++++++.....
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999855443
No 142
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.54 E-value=1e-12 Score=124.83 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=147.4
Q ss_pred CCCcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchH
Q 022442 27 AGDGPYVRAKHAQLV----QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQ 98 (297)
Q Consensus 27 ~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~ 98 (297)
....+.+.++.++.. .+++++|+.+|++++.. +++.+++.||.+|.. .+++++|+..|+++...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--- 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLP--- 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH---
Confidence 355678888888887 89999999999999986 578899999999999 99999999999999887533
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhc-CcchhH----Hhhhh---hhHHHhcCCCcHHHHHHHH
Q 022442 99 ESLDNVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKT----ARSHG---KKFQVSVRQETSRLLGNLA 166 (297)
Q Consensus 99 ~~l~~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~----~~~~~---~~~~~~l~p~~~~~l~nLg 166 (297)
...+.||.+|.. .+++++|+..|+++++...+...++ +..... ..+.. ..+...++..++.++++||
T Consensus 112 -~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 112 -QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp -HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344558899998 8999999999999998754332221 110000 00011 1122345567889999999
Q ss_pred HHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442 167 WAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 167 ~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~ 221 (297)
.+|.. .+++++|+.+|+++++. +++. .++||.+|.. .+++++|+.+|++++..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 99998 89999999999999876 4566 8899999997 89999999999999986
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.54 E-value=3.2e-13 Score=102.93 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
..+...+..+...|++++|+.+|++++..+|+.+.++..+|.++...|++++|+..+++++...|++. .....+|.+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHHHH
Confidence 35667788888999999999999999999999999999999999999999999999999999999853 4556689999
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM 176 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~ 176 (297)
...|++++|+..|++++++.| +++.++..+|.++..+|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p--------------------------~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP--------------------------DNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCc--------------------------cchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999854 45678999999999998863
No 144
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.53 E-value=2e-15 Score=144.21 Aligned_cols=127 Identities=17% Similarity=0.078 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
.+.++..+|.++.++|++++|++.|+++++++|+++ .....+|.+|.++|++++|+..|++++++.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------ 70 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELD------------ 70 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------
Confidence 345567788888899999999999999999999743 455668899999999999999999998874
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH--HHHcCCHHHHHHHHH
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC--LIKRTRYNEARSVLE 216 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~--l~~~g~~~eA~~~~~ 216 (297)
|+++.+++++|.+|..+|++++|+.+|+++++++|++.. +.+++.+ +..+|++++|+..++
T Consensus 71 --------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 71 --------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 356678899999999999999999999999999999887 8888888 888899999999998
No 145
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.53 E-value=1.1e-14 Score=132.80 Aligned_cols=137 Identities=14% Similarity=0.081 Sum_probs=88.2
Q ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH---------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 022442 59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ---------------ESLDNVLIDLYKKCGKVEEQIEMLK 123 (297)
Q Consensus 59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~---------------~~l~~~L~~ly~~~g~~~eAi~~~~ 123 (297)
.+..+..+..+|..+...|++++|+..|++++.+.|++.. ...++.+|.+|.++|++++|+..|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445677889999999999999999999999999997421 0256678999999999999999999
Q ss_pred HHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442 124 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL 202 (297)
Q Consensus 124 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l 202 (297)
++|++. |+++.+++++|.+|..+|++++|+.+|+++++++|++.. +.+|+.+.
T Consensus 255 ~al~~~--------------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 255 IVLTEE--------------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHC--------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999874 356778999999999999999999999999999999988 88888884
Q ss_pred -HHcCCHHHHHHHHHHHHhc
Q 022442 203 -IKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 203 -~~~g~~~eA~~~~~~al~~ 221 (297)
...+..+++...|++++..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 4556788888999998886
No 146
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.53 E-value=1.3e-13 Score=105.24 Aligned_cols=124 Identities=8% Similarity=0.064 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
..+.++..+|.++...|++++|+..|++++...|.++ .....+|.+|...|++++|+..|++++.+.|....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------ 73 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE------ 73 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT------
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch------
Confidence 4567899999999999999999999999999999753 45566899999999999999999999998652100
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT 206 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g 206 (297)
.. +..+.++.++|.+|..+|++++|+.+|++++++.|+ +. ...++.++...+
T Consensus 74 -------~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 74 -------DY------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK 126 (131)
T ss_dssp -------CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred -------hH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 00 001568999999999999999999999999999995 55 777887765543
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.53 E-value=5.9e-14 Score=104.43 Aligned_cols=68 Identities=12% Similarity=0.023 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
+|+++.++..+|.++...|++++|+..+++++...|.+. .....+|.+|...|++++|+..|++++++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555555421 22333455555555555555555555544
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.52 E-value=3.3e-13 Score=103.89 Aligned_cols=108 Identities=11% Similarity=0.025 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
++++.+|.++...|++++|+..|++++...|++.. ......+|.+|...|++++|+..|+++++..|..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------- 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------- 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC----------
Confidence 34677788888888888888888888888876421 1344457788888888888888888887765411
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
+..+.+++++|.+|..+|++++|+..|++++...|+++.
T Consensus 73 -------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 73 -------------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp -------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred -------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 011557788888888888888888888888888887775
No 149
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=5e-13 Score=126.51 Aligned_cols=186 Identities=13% Similarity=0.048 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CChHHHHHHHHHHHhhCCcchHHH
Q 022442 28 GDGPYVRAKHAQLVQK---DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQES 100 (297)
Q Consensus 28 ~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~----g~~~eAi~~~~~al~~~P~~~~~~ 100 (297)
++.+.+.++.++...| ++++|+.+|++++..+|..+.++++||.+|... +++++|+..|+++. |+++ .
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~--~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP--A 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST--H
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH--H
Confidence 3347777777777777 777788888888888777777777888877555 67788888887776 4432 2
Q ss_pred HHHHHHHH-H--HHcCCHHHHHHHHHHHHHhhchhhhhc-CcchhHH----hhhh---hhHHHhcCCCcHHHHHHHHHHH
Q 022442 101 LDNVLIDL-Y--KKCGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKTA----RSHG---KKFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 101 l~~~L~~l-y--~~~g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~~----~~~~---~~~~~~l~p~~~~~l~nLg~~y 169 (297)
..+.||.+ | ...|++++|+..|+++++...+...++ +...... .+.. ..+...+ |.++.++++||.+|
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34446666 4 467788888888888776543222211 0000000 0000 0122233 55566666666555
Q ss_pred HH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442 170 MQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 170 ~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~ 221 (297)
.. ..++++|+.+|++|.+ +.++. .++||.+|.. ..++++|..+|+++...
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 55 2356666666666554 23444 5556665553 23566666666665553
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.51 E-value=2e-13 Score=126.20 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHh----------------hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRG----------------LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~----------------~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
+..+..+|..+...|++++|+..|++++. ..|. ...+++.+|.+|.++|++++|+..+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35688899999999999999999999988 4454 23456678999999999999999999999
Q ss_pred HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442 127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR 205 (297)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~ 205 (297)
++. |+++.+++++|.+|..+|++++|+..|++|++++|++.. +..|+.++..+
T Consensus 301 ~~~--------------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 301 EID--------------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp TTC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhC--------------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 874 456778999999999999999999999999999999998 88999999999
Q ss_pred CCHHHHHHH
Q 022442 206 TRYNEARSV 214 (297)
Q Consensus 206 g~~~eA~~~ 214 (297)
++++++...
T Consensus 355 ~~~~~a~k~ 363 (370)
T 1ihg_A 355 KAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 988887643
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.51 E-value=5e-13 Score=107.91 Aligned_cols=113 Identities=16% Similarity=0.090 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
.....|..+.+.|++++|+..|++++.+.+...... .. .......++|....++.++|.+|..+|++++|+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILRE-KP-------GEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS-CT-------TSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC-CC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345578999999999999999999999843210000 00 0000012245667899999999999999999999
Q ss_pred HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.|++|+.++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999999999998 999999999999999999999999998
No 152
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.51 E-value=2.2e-12 Score=116.40 Aligned_cols=180 Identities=3% Similarity=-0.112 Sum_probs=138.0
Q ss_pred chhhhhhhhhcC-CCCCcHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCChHHHHHHHHHHH----HHC---CChHHHH
Q 022442 14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQK--DPEAAIVLFWKAINAGDRVDSALKDMAVVM----KQL---DRSEEAI 83 (297)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l----~~~---g~~~eAi 83 (297)
+.=+.+..+..+ |...++...=+.+...-| ++++++.++.+++..+|++..+|+..+.++ ... +++++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 344555444444 544444433344444556 999999999999999999999999999999 777 8999999
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE--EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~--eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 161 (297)
+.+.+++..+|++.+ ..+..+.++...|+++ ++++.+.++++.+| .+..+
T Consensus 131 ~~~~~~l~~~pkny~--aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~--------------------------~N~sA 182 (306)
T 3dra_A 131 DILEAMLSSDPKNHH--VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL--------------------------KNNSA 182 (306)
T ss_dssp HHHHHHHHHCTTCHH--HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT--------------------------TCHHH
T ss_pred HHHHHHHHhCCCCHH--HHHHHHHHHHHhcccChHHHHHHHHHHHHhCC--------------------------CCHHH
Confidence 999999999998643 3334677889999999 99999999999854 45567
Q ss_pred HHHHHHHHHHCCC------hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH-HHHHHHHHHhc
Q 022442 162 LGNLAWAYMQKTN------FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE-ARSVLEDVLYG 221 (297)
Q Consensus 162 l~nLg~~y~~~g~------~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e-A~~~~~~al~~ 221 (297)
+.+.+.++..+|+ ++++++++.+++.++|+|.. |+.++.++...|+..+ ....+++++..
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 8888888888777 78888888888888888887 8888888888887544 33455666654
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.51 E-value=4.1e-13 Score=105.76 Aligned_cols=139 Identities=17% Similarity=0.076 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 138 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~ 138 (297)
..++..+|.++...|++++|+..+++++.+.|.. ........+|.+|...|++++|+..+++++++.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------ 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Confidence 4678899999999999999999999999876641 112355668999999999999999999999985411
Q ss_pred chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc------HH-HhHHHHHHHHcCCHHHH
Q 022442 139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEA 211 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~------~~-~~nLg~~l~~~g~~~eA 211 (297)
+.. +....++.++|.++..+|++++|+.+|++++++.+.. .. +.++|.++..+|++++|
T Consensus 83 --------~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 83 --------KDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp --------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred --------CCc------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 000 0124578999999999999999999999999874321 23 67899999999999999
Q ss_pred HHHHHHHHhc
Q 022442 212 RSVLEDVLYG 221 (297)
Q Consensus 212 ~~~~~~al~~ 221 (297)
+..+++++..
T Consensus 149 ~~~~~~a~~~ 158 (164)
T 3ro3_A 149 MHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.51 E-value=1.8e-14 Score=137.61 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=111.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 115 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~ 115 (297)
+..+...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|++.++++++++|+++ ...+.+|.+|..+|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCH
Confidence 34456789999999999999999999999999999999999999999999999999999853 4556689999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH--HHHCCChHHHHHHHH----------
Q 022442 116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA--YMQKTNFMAAEVVYQ---------- 183 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~--y~~~g~~~eA~~~y~---------- 183 (297)
++|+..|++++++.| +++.++.++|.+ +..+|++++|+..|+
T Consensus 91 ~eA~~~~~~al~~~p--------------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 91 RAALRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp HHHHHHHHHHHHHST--------------------------TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred HHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 999999999999854 345578888888 899999999999999
Q ss_pred -HHHHhCCCcH
Q 022442 184 -KAQMIDPDAN 193 (297)
Q Consensus 184 -~Al~~~P~~~ 193 (297)
++++++|+..
T Consensus 145 ~~al~~~~~~~ 155 (477)
T 1wao_1 145 IESMTIEDEYS 155 (477)
T ss_dssp TSSCCCCTTCC
T ss_pred hhhcccccccc
Confidence 9999888754
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.49 E-value=2.5e-13 Score=100.95 Aligned_cols=102 Identities=14% Similarity=0.018 Sum_probs=90.5
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442 93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 172 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~ 172 (297)
+|+++ .....+|.++...|++++|+..|++++++.| +++.++.++|.+|..+
T Consensus 2 ~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~~a~~~~~~ 53 (112)
T 2kck_A 2 VDQNP--EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--------------------------EESKYWLMKGKALYNL 53 (112)
T ss_dssp CCSST--TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHHHHT
T ss_pred CCCcH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--------------------------CCHHHHHHHHHHHHHc
Confidence 45532 2344578899999999999999999999754 4567899999999999
Q ss_pred CChHHHHHHHHHHHHhCCC--cHH-HhHHHHHHHHc-CCHHHHHHHHHHHHhcC
Q 022442 173 TNFMAAEVVYQKAQMIDPD--ANK-ACNLGLCLIKR-TRYNEARSVLEDVLYGR 222 (297)
Q Consensus 173 g~~~eA~~~y~~Al~~~P~--~~~-~~nLg~~l~~~-g~~~eA~~~~~~al~~~ 222 (297)
|++++|+.+|+++++++|+ +.. +.++|.++..+ |++++|+..+++++...
T Consensus 54 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred cCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999 888 99999999999 99999999999999873
No 156
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=2.2e-12 Score=123.81 Aligned_cols=180 Identities=5% Similarity=-0.047 Sum_probs=148.4
Q ss_pred chhhhhhhhhc--CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 14 KKEDLFHVIHK--VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 14 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~~al 90 (297)
...+.|....+ .|.....+...+.+....|++++|...|+++++.+|.++ .+|..+|.++.++|++++|+++|++++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44566644443 465555666777778889999999999999999999885 689999999999999999999999999
Q ss_pred hhCCcchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442 91 GLCSKQSQESLDNVLIDL-YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 91 ~~~P~~~~~~l~~~L~~l-y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y 169 (297)
...|......+. .+.+ +...|++++|..+|+++++..| +++.++.++|.++
T Consensus 384 ~~~~~~~~~~~~--~a~~~~~~~~~~~~A~~~~e~al~~~p--------------------------~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 384 EDARTRHHVYVT--AALMEYYCSKDKSVAFKIFELGLKKYG--------------------------DIPEYVLAYIDYL 435 (530)
T ss_dssp TCTTCCTHHHHH--HHHHHHHHTCCHHHHHHHHHHHHHHHT--------------------------TCHHHHHHHHHHH
T ss_pred hccCCchHHHHH--HHHHHHHHcCChhHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHH
Confidence 998864332222 2222 4469999999999999999854 5677899999999
Q ss_pred HHCCChHHHHHHHHHHHHhCCCcH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 170 MQKTNFMAAEVVYQKAQMIDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~Al~~~P~~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..+|++++|..+|++++...|.++ . |..........|+.+.+..+++++++.
T Consensus 436 ~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 436 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999877554 3 667788888999999999999999986
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=1.4e-12 Score=98.43 Aligned_cols=116 Identities=22% Similarity=0.167 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
..+...+..+...|++++|+.+|++++..+|....++..+|.++...|++++|+..+++++...|.+. .....+|.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHH
Confidence 35677788888999999999999999999999999999999999999999999999999999999753 3556689999
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g 173 (297)
...|++++|+..+++++++.| +++.++.++|.++..+|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP--------------------------NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCC--------------------------CcHHHHHHHHHHHHhcc
Confidence 999999999999999998744 56678899999987765
No 158
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=9.5e-13 Score=128.35 Aligned_cols=159 Identities=9% Similarity=-0.014 Sum_probs=140.0
Q ss_pred HcCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 41 VQKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 41 ~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~----------~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
..|+ .++|+.++.+++..+|++..+|+..+.++...|+ ++++++.+++++..+|++.+ +++.-+.++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~--aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHH
Confidence 4454 4568999999999999999999999999999999 99999999999999998543 444468888
Q ss_pred HHcC--CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHH
Q 022442 110 KKCG--KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-NFMAAEVVYQKAQ 186 (297)
Q Consensus 110 ~~~g--~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g-~~~eA~~~y~~Al 186 (297)
.+.| ++++|++.+.++++++| .+..+|++.|+++..+| .++++++++.+++
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~--------------------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADE--------------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred HHcccccHHHHHHHHHHHHhhcc--------------------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 9999 77999999999999854 56779999999999999 9999999999999
Q ss_pred HhCCCcHH-HhHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCCCcchh
Q 022442 187 MIDPDANK-ACNLGLCLIKR--------------TRYNEARSVLEDVLYGRIPGCEDGR 230 (297)
Q Consensus 187 ~~~P~~~~-~~nLg~~l~~~--------------g~~~eA~~~~~~al~~~~~~~~~~~ 230 (297)
+.+|++.. |.+.+.++..+ +++++|++.+.+++.. +|.+..
T Consensus 172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~---~P~~~s 227 (567)
T 1dce_A 172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQS 227 (567)
T ss_dssp TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH---CSSCSH
T ss_pred HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh---CCCCcc
Confidence 99999998 99999999885 6689999999999987 455444
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.48 E-value=1.9e-12 Score=114.77 Aligned_cols=136 Identities=12% Similarity=-0.001 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHCCChHHHHHHHHHHH---hhCCcch--HHHHH
Q 022442 34 RAKHAQLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFR---GLCSKQS--QESLD 102 (297)
Q Consensus 34 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~l~~~g~~~eAi~~~~~al---~~~P~~~--~~~l~ 102 (297)
..+.++...|++++|+..|++++...+.. ..++.++|.+|..+|++++|+..|++++ ...|++. .....
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 34556677889999999999999864433 6689999999999999999999999998 4455422 11466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHH-HHH
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA-EVV 181 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA-~~~ 181 (297)
+.+|.+|..+|++++|+..+++++++.+... . ....+.+++++|.+|..+|++++| ..+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~--------------~------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~ 259 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRIN--------------S------MALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------B------CSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--------------c------HHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 7799999999999999999999999853110 0 011246899999999999999999 888
Q ss_pred HHHHHHhC
Q 022442 182 YQKAQMID 189 (297)
Q Consensus 182 y~~Al~~~ 189 (297)
|++|+.+.
T Consensus 260 ~~~Al~~~ 267 (293)
T 2qfc_A 260 YKKASFFF 267 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999763
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.48 E-value=9.1e-14 Score=131.91 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=126.6
Q ss_pred CHHHHHHHHHH----HHHcCCChHHHHHHHHHHH------------HHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 022442 44 DPEAAIVLFWK----AINAGDRVDSALKDMAVVM------------KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID 107 (297)
Q Consensus 44 ~~~~A~~~~~~----al~~~p~~~~a~~~Lg~~l------------~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ 107 (297)
.++.|+..+++ +|.++|.. ++.+.|... ..++++++|+..++.++...|.. ......+|.
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~--a~~~~~~G~ 276 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ--AAIVKEKGT 276 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHH--HHHHHHHHH
Confidence 56777777776 77777764 344444322 24567788888888888887763 345566899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
+|.+.|++++|+..|++++++.|....+. ......+++....++.|+|.+|..+|+|++|+.+|++|++
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLS-----------EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCC-----------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCC-----------hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999976321110 0000111222356899999999999999999999999999
Q ss_pred hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442 188 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI 223 (297)
Q Consensus 188 ~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~ 223 (297)
++|++.. ++++|.+|..+|++++|+..|++++...+
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999998 99999999999999999999999999843
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=7.5e-13 Score=102.90 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=94.2
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442 27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI 106 (297)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~ 106 (297)
.....+...+..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++ .....+|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHHHHHH
Confidence 34456888889999999999999999999999999999999999999999999999999999999999853 4556689
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhch
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQ 131 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~ 131 (297)
.+|...|++++|+..|++++++.|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999999774
No 162
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=3.8e-12 Score=115.85 Aligned_cols=171 Identities=16% Similarity=0.038 Sum_probs=119.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc---hHHH
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---SQES 100 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~---~~~~ 100 (297)
+...+.++...|++++|+..|++++... |....++.++|.++..+|++++|+..+++++...|.. ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4455677788899999999999988753 4456678889999999999999999999998887741 1123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
....+|.++...|++++|+..+++++.+.+.... . ... .......++.++...|++++|+.
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~----~--------~~~-------~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY----H--------SDW-------ISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC----C--------HHH-------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc----c--------hhH-------HHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556888999999999999999999887431000 0 000 00011234455777777777777
Q ss_pred HHHHHHHhCCCcH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 181 VYQKAQMIDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 181 ~y~~Al~~~P~~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++++...|... . +.++|.++..+|++++|...+++++..
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777665431 2 456777777777777777777777654
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.47 E-value=4.1e-12 Score=94.98 Aligned_cols=95 Identities=19% Similarity=0.153 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
....+|.++...|++++|+..|++++...| +++.++.++|.+|..+|++++|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~a~~~~~~~~~~~A~~ 59 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP--------------------------HNHVLYSNRSAAYAKKGDYQKAYE 59 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------------------------CcHHHHHHHHHHHHhhccHHHHHH
Confidence 445578999999999999999999998744 466789999999999999999999
Q ss_pred HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.|+++++++|+++. +.++|.++..+|++++|...+++++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99999999999998 999999999999999999999999997
No 164
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.46 E-value=8.4e-12 Score=112.29 Aligned_cols=163 Identities=9% Similarity=-0.048 Sum_probs=125.9
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-----chHH
Q 022442 27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-----QSQE 99 (297)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-----~~~~ 99 (297)
+++.+...++.++...|++++|+.++.+.+..+| ...+++..++.++.++||.+.|.+.++++.+.+|+ +. .
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~-~ 176 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE-M 176 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH-H
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH-H
Confidence 3444556667777788888888888888888886 78888888888888888988888888888888882 21 1
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC--cHHHHHHHHHHHHHCCCh
Q 022442 100 SLDNVLIDLYKKCG--KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE--TSRLLGNLAWAYMQKTNF 175 (297)
Q Consensus 100 ~l~~~L~~ly~~~g--~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~--~~~~l~nLg~~y~~~g~~ 175 (297)
.+...-+++....| ++.+|..+|+++....| + ....+.| +++++|++
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--------------------------~~~~~~lLln---~~~~~g~~ 227 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFP--------------------------TWKTQLGLLN---LHLQQRNI 227 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--------------------------SHHHHHHHHH---HHHHHTCH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--------------------------CcccHHHHHH---HHHHcCCH
Confidence 12222244455555 88888888888766533 2 1234555 89999999
Q ss_pred HHHHHHHHHHHHh----------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 176 MAAEVVYQKAQMI----------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 176 ~eA~~~y~~Al~~----------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++|+..++++++. +|+++. ..|+..+...+|+ +|.++++++...
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 9999999988887 588998 7799999999998 899999999997
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.46 E-value=1.5e-12 Score=102.53 Aligned_cols=141 Identities=15% Similarity=0.065 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQES 100 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~ 100 (297)
.+...+.++...|++++|+.++++++...+... .++..+|.++..+|++++|+..+++++.+.+.. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 456677888899999999999999998755432 488999999999999999999999998875531 1223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
....+|.++...|++++|+..+++++++.+.. +.. +....++.++|.+|..+|++++|+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--------------KDR------IGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------------cch------HhHHHHHHHHHHHHHHccCHHHHHH
Confidence 45668999999999999999999999984310 000 0124578999999999999999999
Q ss_pred HHHHHHHhCCC
Q 022442 181 VYQKAQMIDPD 191 (297)
Q Consensus 181 ~y~~Al~~~P~ 191 (297)
+|++++++...
T Consensus 151 ~~~~a~~~~~~ 161 (164)
T 3ro3_A 151 FAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999987554
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.46 E-value=1.7e-13 Score=105.00 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHH
Q 022442 76 LDRSEEAIEAIKSFRGLC---SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV 152 (297)
Q Consensus 76 ~g~~~eAi~~~~~al~~~---P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
+|++++|+..|++++.++ |++ ......+|.+|...|++++|+..|++++++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------------- 57 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDL--AECYLGLGSTFRTLGEYRKAEAVLANGVKQF----------------------- 57 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 355555555555555552 331 2233345555555555555555555555542
Q ss_pred hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
|+++.++.++|.+|..+|++++|+.+|+++++..|+++.
T Consensus 58 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 58 ---PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred ---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 233445555555555555555555555555555555554
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.45 E-value=1.1e-13 Score=126.23 Aligned_cols=135 Identities=11% Similarity=0.031 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-----------------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-----------------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P 94 (297)
+...+..+...|++++|+..|++++...|++. .++.++|.++..+|++++|+..|++++.++|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 261 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE 261 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55556677789999999999999999999987 4899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH-HHCC
Q 022442 95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKT 173 (297)
Q Consensus 95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y-~~~g 173 (297)
++. ..++.+|.+|..+|++++|+..|++++++.| +++.++.+|+.+. ...+
T Consensus 262 ~~~--~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--------------------------~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 262 KNP--KALFRRGKAKAELGQMDSARDDFRKAQKYAP--------------------------DDKAIRRELRALAEQEKA 313 (338)
T ss_dssp TCH--HHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------------
T ss_pred CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHHHHHHH
Confidence 853 4566689999999999999999999998854 4566888899884 5668
Q ss_pred ChHHHHHHHHHHHHhCCCcHH
Q 022442 174 NFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 174 ~~~eA~~~y~~Al~~~P~~~~ 194 (297)
..+++...|++++...|+++.
T Consensus 314 ~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHhhCCCCCCCC
Confidence 889999999999999998864
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.45 E-value=7.5e-12 Score=114.53 Aligned_cols=157 Identities=11% Similarity=0.018 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc-C-CHHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-G-KVEEQI 119 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g-~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~-g-~~~eAi 119 (297)
+..++|+.++.++|..+|++..+|+..+.++...| .++++++.++.++..+|++. .+.+..+.++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhcCCChHHHH
Confidence 45578999999999999999999999999999999 59999999999999999853 3444467777777 7 999999
Q ss_pred HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH--------HHHHHHHHHHHhCCC
Q 022442 120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM--------AAEVVYQKAQMIDPD 191 (297)
Q Consensus 120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~--------eA~~~y~~Al~~~P~ 191 (297)
+++.++++++ |.+..+++..++++...|+++ ++++++.++++.+|.
T Consensus 146 ~~~~k~L~~d--------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 146 EYIHGSLLPD--------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHHHTSSC--------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 9999999874 456779999999999999998 999999999999999
Q ss_pred cHH-HhHHHHHHHHcCC-------HHHHHHHHHHHHhcCCCCCcchh
Q 022442 192 ANK-ACNLGLCLIKRTR-------YNEARSVLEDVLYGRIPGCEDGR 230 (297)
Q Consensus 192 ~~~-~~nLg~~l~~~g~-------~~eA~~~~~~al~~~~~~~~~~~ 230 (297)
|.. |.+.+.++...|+ +++++..+.+++.. +|.+..
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~S 243 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVS 243 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHH
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHH
Confidence 998 9999999999997 79999999999987 455444
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=3.6e-12 Score=97.92 Aligned_cols=96 Identities=23% Similarity=0.190 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
..+|.++...|++++|+..|+++++..|.. +..+.+++++|.+|..+|++++|+.+|
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~ 62 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG-----------------------VYTPNALYWLGESYYATRNFQLAEAQF 62 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-----------------------TTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----------------------cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 347888999999999999999999986521 112368999999999999999999999
Q ss_pred HHHHHhCCCc---HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 183 QKAQMIDPDA---NK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 183 ~~Al~~~P~~---~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++..+|++ +. ++++|.++..+|++++|+..|++++..
T Consensus 63 ~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 63 RDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999 77 889999999999999999999999987
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.44 E-value=1.9e-11 Score=111.27 Aligned_cols=153 Identities=8% Similarity=-0.026 Sum_probs=135.4
Q ss_pred HcCCHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442 41 VQKDPE-AAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLY 109 (297)
Q Consensus 41 ~~g~~~-~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~----------~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly 109 (297)
..|++. +|+.++.++|..+|.+..+|+.-+.++...|+ +++++..+..++..+|++.. +.+.-+.++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~--aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHH
Confidence 566665 69999999999999999999999999988877 68999999999999998543 444467788
Q ss_pred HHcCC--HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHH
Q 022442 110 KKCGK--VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-FMAAEVVYQKAQ 186 (297)
Q Consensus 110 ~~~g~--~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~-~~eA~~~y~~Al 186 (297)
...|+ +++++.++.++++++| .+..+|++.++++...|+ +++++.++.+++
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dp--------------------------rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADE--------------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 88884 8999999999999854 567799999999999999 599999999999
Q ss_pred HhCCCcHH-HhHHHHHHHHc--------------CCHHHHHHHHHHHHhc
Q 022442 187 MIDPDANK-ACNLGLCLIKR--------------TRYNEARSVLEDVLYG 221 (297)
Q Consensus 187 ~~~P~~~~-~~nLg~~l~~~--------------g~~~eA~~~~~~al~~ 221 (297)
+.+|.|.. |.+++.++... +.+++++..+.+++..
T Consensus 173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 99999998 99999999887 5689999999999987
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.44 E-value=2.5e-13 Score=104.00 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=75.5
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
.+|++++|+..|++++++.+. +|+++.++.+||.+|..+|++++|+.+|+++++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-----------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-----------------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCCC-----------------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 468999999999999998310 123567899999999999999999999999999999
Q ss_pred CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++. +.++|.++..+|++++|+..+++++..
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998 999999999999999999999999987
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.5e-12 Score=117.33 Aligned_cols=166 Identities=9% Similarity=0.061 Sum_probs=134.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCh-----------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRV-----------------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-- 96 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-- 96 (297)
+.-+...|++++|+..|.++++..|.. ..++.+||.+|..+|++++|++.+..++...+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 444568999999999999999988764 3468999999999999999999999988765531
Q ss_pred --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC
Q 022442 97 --SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN 174 (297)
Q Consensus 97 --~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~ 174 (297)
....+.+.++.++...|++++|+.++++++.+.+.. .. .+..+.++.+||.+|...|+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~la~~~~~~g~ 150 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--------------KR------VFLKHSLSIKLATLHYQKKQ 150 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--------------SC------CSSHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------Cc------cHHHHHHHHHHHHHHHHccC
Confidence 122345668888889999999999999999874311 00 12235688999999999999
Q ss_pred hHHHHHHHHHHHHhC------CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 175 FMAAEVVYQKAQMID------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 175 ~~eA~~~y~~Al~~~------P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
|++|+.++++++..- |.... +.++|.+|..+|++++|..++++++..
T Consensus 151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999999998762 22234 678999999999999999999999865
No 173
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.42 E-value=1.6e-12 Score=115.59 Aligned_cols=137 Identities=19% Similarity=0.030 Sum_probs=114.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV 115 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~ 115 (297)
..++...|++++|.+.|+..+..+|... +++.+|.++.+.|++++|+..|+.+....++......+..||.++..+|++
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 4456689999999999999999999988 999999999999999999999998776532211124677799999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
++|+..|++++... .+|. .+++++++|.++.++|+.++|..+|++++..+|+ ..
T Consensus 188 ~eAl~~l~~a~~g~------------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 188 TEAERRLTEANDSP------------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHHHHHTST------------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred HHHHHHHHHHhcCC------------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 99999999998642 0122 4568999999999999999999999999999999 65
Q ss_pred -HhHH
Q 022442 195 -ACNL 198 (297)
Q Consensus 195 -~~nL 198 (297)
+..|
T Consensus 243 ~~~aL 247 (282)
T 4f3v_A 243 VAAAL 247 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 4444
No 174
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.42 E-value=3.7e-12 Score=112.90 Aligned_cols=135 Identities=11% Similarity=-0.008 Sum_probs=106.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---Cc--chHHHHHH
Q 022442 35 AKHAQLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---SK--QSQESLDN 103 (297)
Q Consensus 35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~---P~--~~~~~l~~ 103 (297)
.+.++...|++++|+.+|++++...+.. ..++.++|.+|..+|++++|+..|++++... |. .....+.+
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 4556667789999999999999954332 3479999999999999999999999998532 11 11234567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC-hHHHHHHH
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-FMAAEVVY 182 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~-~~eA~~~y 182 (297)
.+|.+|..+|++++|+..+++++++.+... . .+..+.++.++|.+|..+|+ +++|+.+|
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--------------~------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRIN--------------S------MALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------B------CTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--------------c------HHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 799999999999999999999999854210 0 01235689999999999995 69999999
Q ss_pred HHHHHhC
Q 022442 183 QKAQMID 189 (297)
Q Consensus 183 ~~Al~~~ 189 (297)
++|+.+.
T Consensus 261 ~~Al~i~ 267 (293)
T 3u3w_A 261 KKASFFF 267 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.40 E-value=3.1e-11 Score=109.82 Aligned_cols=179 Identities=8% Similarity=-0.017 Sum_probs=139.6
Q ss_pred hhhhhhhhhcCCCCCcHHHHHHHHHH-HcCC----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--hHH
Q 022442 15 KEDLFHVIHKVPAGDGPYVRAKHAQL-VQKD----------PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR--SEE 81 (297)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~----------~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~--~~e 81 (297)
.=+.+..+..+.|.....+......+ .-++ +++++.++..++..+|.+..+|+..+.++...|+ +++
T Consensus 49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~ 128 (331)
T 3dss_A 49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 128 (331)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHH
Confidence 34555555555445554444433222 2222 6889999999999999999999999999999995 899
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHH
Q 022442 82 AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK-VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR 160 (297)
Q Consensus 82 Ai~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~-~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 160 (297)
+++.+.+++..+|.+.+ ..+.-+.++...|+ ++++++.+.++++.+| .+..
T Consensus 129 EL~~~~k~l~~dprNy~--AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--------------------------~N~S 180 (331)
T 3dss_A 129 ELELCARFLEADERNFH--CWDYRRFVAAQAAVAPAEELAFTDSLITRNF--------------------------SNYS 180 (331)
T ss_dssp HHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--------------------------CCHH
T ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--------------------------CCHH
Confidence 99999999999998543 33346777888998 6999999999998754 5677
Q ss_pred HHHHHHHHHHHC--------------CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc-----------CCHHHHHHH
Q 022442 161 LLGNLAWAYMQK--------------TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR-----------TRYNEARSV 214 (297)
Q Consensus 161 ~l~nLg~~y~~~--------------g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~-----------g~~~eA~~~ 214 (297)
+++++|.++..+ +.++++++++.+++.++|+|.. |+-+..++... +.+++++..
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 899999998877 5689999999999999999998 76554444444 357899999
Q ss_pred HHHHHhc
Q 022442 215 LEDVLYG 221 (297)
Q Consensus 215 ~~~al~~ 221 (297)
++++++.
T Consensus 261 ~~elle~ 267 (331)
T 3dss_A 261 CKELQEL 267 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999987
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=6.9e-12 Score=98.09 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=91.4
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHH
Q 022442 27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN 103 (297)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~ 103 (297)
.....+...+..+...|++++|+.+|++++..+|+. ..++.++|.++..+|++++|+..+++++...|++. ....
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV--KALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH--HHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH--HHHH
Confidence 344467777888899999999999999999999998 89999999999999999999999999999999853 4556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
.+|.+|...|++++|+..|++++++.|
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999854
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=2.2e-12 Score=125.75 Aligned_cols=166 Identities=8% Similarity=-0.012 Sum_probs=137.1
Q ss_pred hhhh-hhhcCCCCCcHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--ChHHHH
Q 022442 17 DLFH-VIHKVPAGDGPYVRAKHAQLVQKD----------PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAI 83 (297)
Q Consensus 17 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g--~~~eAi 83 (297)
+.+. ++...|...+++..=+.+...-|+ +++++.++.++++.+|++..+|+..+.++...| ++++++
T Consensus 50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el 129 (567)
T 1dce_A 50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHH
Confidence 4453 344445554554444444444455 999999999999999999999999999999999 669999
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442 84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL 162 (297)
Q Consensus 84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g-~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l 162 (297)
+.+.++++.+|++. ..++..+.++...| .++++++.+.++++.+ |++..+|
T Consensus 130 ~~~~k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--------------------------p~n~saW 181 (567)
T 1dce_A 130 ELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITRN--------------------------FSNYSSW 181 (567)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--------------------------CCCHHHH
T ss_pred HHHHHHHhhccccc--cHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--------------------------CCCccHH
Confidence 99999999999853 34444678888999 9999999999998874 4677899
Q ss_pred HHHHHHHHHC--------------CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH
Q 022442 163 GNLAWAYMQK--------------TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE 210 (297)
Q Consensus 163 ~nLg~~y~~~--------------g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e 210 (297)
++.|.++..+ +++++|++++.+|+.++|++.. |+.++.++...|++++
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 9999999885 6689999999999999999998 9999999999998766
No 178
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.38 E-value=1e-12 Score=106.72 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=78.8
Q ss_pred HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh----------HHHH
Q 022442 110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF----------MAAE 179 (297)
Q Consensus 110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~----------~eA~ 179 (297)
.+.+++++|+..++++++++ |+++.+++++|.++.+++++ ++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--------------------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--------------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHH
Confidence 45678999999999999985 46788999999999999886 5999
Q ss_pred HHHHHHHHhCCCcHH-HhHHHHHHHHcC-----------CHHHHHHHHHHHHhc
Q 022442 180 VVYQKAQMIDPDANK-ACNLGLCLIKRT-----------RYNEARSVLEDVLYG 221 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g-----------~~~eA~~~~~~al~~ 221 (297)
..|++||+++|++.. +++||.+|..+| ++++|+.+|+++++.
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 999999999999998 999999999885 899999999999998
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=2.8e-12 Score=97.77 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch--H---HHHHHH
Q 022442 30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--Q---ESLDNV 104 (297)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~--~---~~l~~~ 104 (297)
..+...+..+...|++++|+.+|++++..+|.++.++.++|.++..+|++++|+..+++++...|.+. . ......
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35677788889999999999999999999999999999999999999999999999999999987530 0 345567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
+|.+|...|++++|+..|++++++.|
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999854
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.36 E-value=7.4e-12 Score=115.71 Aligned_cols=122 Identities=9% Similarity=0.019 Sum_probs=109.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----------------cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 32 YVRAKHAQLVQKDPEAAIVLFWKAIN----------------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 32 ~~~~~~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
+...+..+...|++++|+..|+++++ .+|....++.++|.++..+|++++|+..+++++.++|+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 56667788899999999999999999 78888999999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442 96 QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF 175 (297)
Q Consensus 96 ~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~ 175 (297)
++ ..++.+|.+|..+|++++|+..|++++++.| ++..++..++.++..++++
T Consensus 306 ~~--~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--------------------------~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 306 NT--KALYRRAQGWQGLKEYDQALADLKKAQEIAP--------------------------EDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHHHH
T ss_pred hH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHH
Confidence 53 4566689999999999999999999999854 5667889999999999999
Q ss_pred HHHHHH
Q 022442 176 MAAEVV 181 (297)
Q Consensus 176 ~eA~~~ 181 (297)
+++...
T Consensus 358 ~~a~k~ 363 (370)
T 1ihg_A 358 KDKEKA 363 (370)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 888754
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.34 E-value=2.6e-11 Score=116.10 Aligned_cols=135 Identities=7% Similarity=-0.040 Sum_probs=107.6
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhh-----CCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442 69 MAVVMKQLDRSEEAIEAIKSFRGL-----CSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT 142 (297)
Q Consensus 69 Lg~~l~~~g~~~eAi~~~~~al~~-----~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~ 142 (297)
.+..+..+|++++|+..+++++++ .|+++. ....++||.+|..+|+|++|+.+++++|++.. ...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------~~l 385 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM---------KLY 385 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------HHc
Confidence 445578899999999999998764 444322 24457799999999999999999999999842 011
Q ss_pred HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcHH----HhHHHHHHHHcCCHHHHHH
Q 022442 143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK----ACNLGLCLIKRTRYNEARS 213 (297)
Q Consensus 143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~~----~~nLg~~l~~~g~~~eA~~ 213 (297)
...| |+.+..++|||.+|..+|++++|+.+|++|+++ .|+++. ..+|+.++.++|++++|..
T Consensus 386 G~~H---------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 386 HHNN---------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp CTTC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 233457899999999999999999999999985 688874 4579999999999999999
Q ss_pred HHHHHHhc
Q 022442 214 VLEDVLYG 221 (297)
Q Consensus 214 ~~~~al~~ 221 (297)
.|+++.+.
T Consensus 457 ~~~~~~~~ 464 (490)
T 3n71_A 457 MYHKMREA 464 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 182
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=3.2e-11 Score=114.02 Aligned_cols=184 Identities=13% Similarity=0.035 Sum_probs=133.4
Q ss_pred CCcHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCcchHHH
Q 022442 28 GDGPYVRAKHAQLVQK----DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD---RSEEAIEAIKSFRGLCSKQSQES 100 (297)
Q Consensus 28 ~~~~~~~~~~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g---~~~eAi~~~~~al~~~P~~~~~~ 100 (297)
...+.+.++.++...+ +.+.+..+++.+...+|. ++++||.+|...| ++++|+..|+++...+|..+.
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-- 214 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-- 214 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH--
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH--
Confidence 3456666666666555 445566666666666665 8999999999999 999999999999999987442
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHhhchhhhhc-Ccc-h--hHHhhhh---hhHHHhcCCCcHHHHHHHHHHH
Q 022442 101 LDNVLIDLYKKC----GKVEEQIEMLKRKLRLIYQGEAFN-GKP-T--KTARSHG---KKFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 101 l~~~L~~ly~~~----g~~~eAi~~~~~al~~~p~~~~~~-~~~-~--~~~~~~~---~~~~~~l~p~~~~~l~nLg~~y 169 (297)
..+.||.+|... +++++|+..|+++. ...+...++ +.. . ....+.. ..+...++++++.++++||.+|
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLY 293 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334578887665 79999999999988 222222221 111 0 0000111 1133466788999999999999
Q ss_pred HHCC-----ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442 170 MQKT-----NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 170 ~~~g-----~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~ 221 (297)
. .| ++++|+.+|++|. |+++. .++||.+|.. ..++++|+.+|+++...
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred H-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 8 55 9999999999998 88888 8999998887 34999999999999885
No 183
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.30 E-value=1.1e-10 Score=106.72 Aligned_cols=167 Identities=12% Similarity=0.030 Sum_probs=134.7
Q ss_pred chhhhhhhhhcC-CCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-C-ChHHHHHHHHHH
Q 022442 14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQK-DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-D-RSEEAIEAIKSF 89 (297)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~-g-~~~eAi~~~~~a 89 (297)
+.=+.+..+..+ |...++...=+.+...-| ++++++.++.+++..+|++..+|+..+.++... + +++++++.+.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 344445444444 544444333334444456 699999999999999999999999999999998 8 999999999999
Q ss_pred HhhCCcchHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442 90 RGLCSKQSQESLDNVLIDLYKKCGKVE--------EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161 (297)
Q Consensus 90 l~~~P~~~~~~l~~~L~~ly~~~g~~~--------eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 161 (297)
+..+|++.. ..+..+.++...|+++ ++++.+.++++.+ |.+..+
T Consensus 152 L~~dpkNy~--AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------------------------p~N~SA 203 (349)
T 3q7a_A 152 LLPDPKNYH--TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------------------------GRNNSA 203 (349)
T ss_dssp TSSCTTCHH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------------------------TTCHHH
T ss_pred HHhCCCCHH--HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------------------------CCCHHH
Confidence 999998532 3333567777888887 9999999988874 456789
Q ss_pred HHHHHHHHHHCCC-------hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH
Q 022442 162 LGNLAWAYMQKTN-------FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY 208 (297)
Q Consensus 162 l~nLg~~y~~~g~-------~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~ 208 (297)
+++.|.++..+++ ++++++++++++.++|+|.. |+.+..++...|+-
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999997 79999999999999999998 99999999888875
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.9e-12 Score=96.67 Aligned_cols=91 Identities=13% Similarity=0.029 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
....+|.++...|++++|+..|++++++.| +++.++.++|.+|..+|++++|+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------~~~~~~~~lg~~~~~~g~~~~A~~ 59 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP--------------------------QNPVGYSNKAMALIKLGEYTQAIQ 59 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------CCHHHHHHHHHHHHHhcCHHHHHH
Confidence 445588899999999999999999998744 566789999999999999999999
Q ss_pred HHHHHHHhCCCc------HH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 181 VYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 181 ~y~~Al~~~P~~------~~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
.|+++++++|++ .. +.++|.++..+|++++|+..+++
T Consensus 60 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 60 MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998 66 78889999988888777655544
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.28 E-value=1.5e-11 Score=93.27 Aligned_cols=79 Identities=24% Similarity=0.110 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-H
Q 022442 117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A 195 (297)
Q Consensus 117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~ 195 (297)
+|+..|+++++.. |+++.+++++|.+|..+|++++|+.+|+++++++|++.. +
T Consensus 3 ~a~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 56 (115)
T 2kat_A 3 AITERLEAMLAQG--------------------------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAW 56 (115)
T ss_dssp CHHHHHHHHHTTT--------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677778877764 567789999999999999999999999999999999998 9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++||.+|..+|++++|+..|++++..
T Consensus 57 ~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 57 KWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999986
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.27 E-value=2.2e-11 Score=90.77 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=63.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 155 ~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|+++.+++++|.+|..+|++++|+.+|+++++++|+++. +.+||.+|..+|++++|+..|++++..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999999999998 999999999999999999999999986
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.26 E-value=4.7e-11 Score=90.52 Aligned_cols=82 Identities=9% Similarity=-0.046 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
+|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++.++|++. ..+..+|.+|...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999853 355668999999999999999999999
Q ss_pred Hhhc
Q 022442 127 RLIY 130 (297)
Q Consensus 127 ~~~p 130 (297)
++.|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9876
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.23 E-value=1.6e-10 Score=82.96 Aligned_cols=81 Identities=30% Similarity=0.313 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
.....+|.++...|++++|+..|++++++.| +++.++.++|.+|..+|++++|+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~A~ 63 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------NNAEAWYNLGNAYYKQGDYDEAI 63 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------------------------CCHHHHHHHHHHHHHHhhHHHHH
Confidence 4455688999999999999999999998743 45678999999999999999999
Q ss_pred HHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442 180 VVYQKAQMIDPDANK-ACNLGLCLIKRT 206 (297)
Q Consensus 180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g 206 (297)
.+|+++++++|+++. +.++|.++..+|
T Consensus 64 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 64 EYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 999999999999998 889999988765
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.23 E-value=2e-10 Score=110.01 Aligned_cols=133 Identities=16% Similarity=0.047 Sum_probs=104.9
Q ss_pred HHHcCCHHHHHHHHHHHHH-----cCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhh-----CCcchHH-HHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAIN-----AGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGL-----CSKQSQE-SLDNV 104 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~-----~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~-----~P~~~~~-~l~~~ 104 (297)
+..+|++++|+.+|++++. ++|++ ..++.+||.+|..+|++++|+..+++++.. .|+++.. ...+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3468999999999999997 45555 456889999999999999999999998754 4554322 34567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
||.+|..+|++++|+..|++|+++.. ...+..|+ ....+..+|+.++.+++++.+|+..|++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~---------~~lG~~Hp---------~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILL---------VTHGPSHP---------ITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH---------HHTCTTSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH---------HHhCCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999842 01111221 2345678999999999999999999999
Q ss_pred HHHhC
Q 022442 185 AQMID 189 (297)
Q Consensus 185 Al~~~ 189 (297)
+.+-.
T Consensus 461 ~~~~~ 465 (490)
T 3n71_A 461 MREAA 465 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97644
No 190
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=3.7e-10 Score=101.58 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=117.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442 48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR 127 (297)
Q Consensus 48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~ 127 (297)
|+..+++.+..++....++..+|.++...|++++|+..+.+.+..+|..........++.+|.++||.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78899988887666677788999999999999999999999999887211345566688999999999999999999877
Q ss_pred hhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH--HHHHHHCC--ChHHHHHHHHHHHHhCCC--cHH-HhHHHH
Q 022442 128 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL--AWAYMQKT--NFMAAEVVYQKAQMIDPD--ANK-ACNLGL 200 (297)
Q Consensus 128 ~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL--g~~y~~~g--~~~eA~~~y~~Al~~~P~--~~~-~~nLg~ 200 (297)
..|+..+. ...++.+| ||+....| ++.+|..+|+++.+..|+ .+. ++|
T Consensus 165 ~~~d~~~~----------------------~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln--- 219 (310)
T 3mv2_B 165 AIEDTVSG----------------------DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN--- 219 (310)
T ss_dssp HSCHHHHH----------------------HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---
T ss_pred cCcccccc----------------------chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---
Confidence 74410000 11244555 55566666 999999999999998888 333 445
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 022442 201 CLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 201 ~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++.+|++++|...++.++..
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999987764
No 191
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.21 E-value=7.3e-10 Score=115.50 Aligned_cols=63 Identities=21% Similarity=0.081 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-------------------------CcHH-HhHHHHHHHHcCCHHHHH
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-------------------------DANK-ACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-------------------------~~~~-~~nLg~~l~~~g~~~eA~ 212 (297)
+..|..+|.+|..+|++++|++++++|...++ .+++ ...++..|...|.+++|+
T Consensus 1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence 35678899999999999999999999865544 1333 457788999999999999
Q ss_pred HHHHHHHhc
Q 022442 213 SVLEDVLYG 221 (297)
Q Consensus 213 ~~~~~al~~ 221 (297)
.+++.++..
T Consensus 1301 ~LlE~aL~L 1309 (1630)
T 1xi4_A 1301 TMLEAALGL 1309 (1630)
T ss_pred HHHHHHhcc
Confidence 999999886
No 192
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.19 E-value=6.4e-10 Score=115.89 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=127.9
Q ss_pred hhhhhhhhcCCCCCcHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442 16 EDLFHVIHKVPAGDGPYVRAKHAQL-VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 94 (297)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P 94 (297)
+|+|..+.+.. -+..+..+++ .-|++++|+++++++ +.+.+|..+|.++...|++++|++.|.++ -+|
T Consensus 1066 EEAf~IYkKa~----~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A 1066 EEAFAIFRKFD----VNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence 56666666663 1222222222 567888888888754 56889999999999999999999999886 222
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh-----hhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442 95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-----EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY 169 (297)
Q Consensus 95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y 169 (297)
..+..++..+.+.|++++|++.|..+.+..++. .++. ..+. .....+.--++..+...+.++|..+
T Consensus 1135 -----say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa--YAKl--~rleele~fI~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1135 -----SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA--LAKT--NRLAELEEFINGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH--HHhh--cCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 233347889999999999999999999876432 1111 0000 0001111122333445667899999
Q ss_pred HHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 170 MQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 170 ~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
...|+|++|..+|.+| ..|..+|.+|.++|++++|++.++++..
T Consensus 1206 e~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 9999999999999996 2499999999999999999999999854
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=2.2e-11 Score=90.77 Aligned_cols=101 Identities=15% Similarity=0.026 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK 141 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~ 141 (297)
.+.++..+|.++...|++++|+..|++++.++|+++ .....+|.+|...|++++|+..|++++++.|.....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV------ 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH------
Confidence 456788899999999999999999999999999753 455568889999999999999999999886521000
Q ss_pred HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
. ....++.++|.++..+|++++|+..|++
T Consensus 75 -------~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 75 -------A-------IRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp -------H-------HHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred -------H-------HHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 0 0145788999999999998888776654
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.6e-10 Score=106.84 Aligned_cols=171 Identities=9% Similarity=0.008 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQES 100 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~ 100 (297)
++..++.++...|++++|+.+|.+++...+... .+...+|.++...|++++|+..++.++...+. .-...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 367778889999999999999999998654432 34567899999999999999999998876542 11235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
+...||.+|...|++++|+.++++++...... . -++....++.++|.+|..+|++++|..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKL--------------D------DKPSLVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--------------S------CSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--------------c------cchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence 66779999999999999999999998864210 0 012245689999999999999999999
Q ss_pred HHHHHHHhCCC---cH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 181 VYQKAQMIDPD---AN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 181 ~y~~Al~~~P~---~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|++++.+.|. .. . +..+|.++...|++++|...|.+++..
T Consensus 197 ~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 197 SLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999987532 21 2 457899999999999999999999864
No 195
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.18 E-value=5e-12 Score=118.67 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK 110 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~ 110 (297)
....++..++..|++++|+..|.++ .++.++..++..+...|++++|+..++.+++..++ ..+...|+.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~---~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE---SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc---chhHHHHHHHHH
Confidence 4444444444455555555555432 22334444455555555555555544444443222 122333444444
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP 190 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P 190 (297)
+.|+++++++.++. | +..++.++|..|...|+|++|..+|.++
T Consensus 106 Klg~l~e~e~f~~~-------------------------------p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 106 KTNRLAELEEFING-------------------------------P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ---CHHHHTTTTTC-------------------------------C-----------------CTTTHHHHHHHT-----
T ss_pred HhCCHHHHHHHHcC-------------------------------C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55555554443321 2 2236777777777777777777777766
Q ss_pred CcHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 191 DANKACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 191 ~~~~~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
..+..||.||.++|++++|++.++++
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 12777777777777777777777777
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.17 E-value=5.7e-10 Score=88.31 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH----cCCHHH
Q 022442 42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CGKVEE 117 (297)
Q Consensus 42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~----~g~~~e 117 (297)
.+|+++|+.+|+++.+.++..+ . ||.+|...+..++|+..|+++.+.... ...+.||.+|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~----~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACELNSG----NGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCH----HHHHHHHHHHHcCCCCCccHHH
Confidence 3567788888888887764443 3 888888777888888888887776432 344457777777 778888
Q ss_pred HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHh
Q 022442 118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~ 188 (297)
|+..|+++.+. .++.+.++||.+|.. .+++++|+.+|++|.+.
T Consensus 80 A~~~~~~Aa~~----------------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 88888887765 245577788888887 78888888888888776
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.13 E-value=6.2e-10 Score=79.79 Aligned_cols=85 Identities=21% Similarity=0.150 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
..+.++..+|.++...|++++|+..|++++..+|++. .....+|.+|...|++++|+..|++++++.|
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p---------- 74 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------- 74 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----------
Confidence 4567888889999999999999999999888888743 3455578888889999999999888888743
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g 173 (297)
+++.++.++|.++..+|
T Consensus 75 ----------------~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 ----------------NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----------------TCHHHHHHHHHHHHHHC
T ss_pred ----------------CCHHHHHHHHHHHHhcC
Confidence 45667888888887654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.07 E-value=2.8e-09 Score=84.24 Aligned_cols=109 Identities=16% Similarity=0.043 Sum_probs=96.7
Q ss_pred CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCC
Q 022442 77 DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 156 (297)
Q Consensus 77 g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p 156 (297)
+++++|+..|+++.+.++..+. ||.+|...+.+++|+..|+++.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~---------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC------LSLVSNSQINKQKLFQYLSKACEL---------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----------------------------
Confidence 4688999999999988765322 788999999999999999999886
Q ss_pred CcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442 157 ETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 157 ~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~ 221 (297)
.++.+.++||.+|.. .+++++|+.+|++|.+. .++. .++||.+|.. .+++++|+.+|+++.+.
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 256789999999999 89999999999999987 6777 8999999999 89999999999999986
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.04 E-value=5.8e-09 Score=95.62 Aligned_cols=146 Identities=17% Similarity=0.084 Sum_probs=96.5
Q ss_pred hhhhcCCCCCcHHHHHH--HHHHHcCC---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---C-ChHHHHH----HH
Q 022442 20 HVIHKVPAGDGPYVRAK--HAQLVQKD---PEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---D-RSEEAIE----AI 86 (297)
Q Consensus 20 ~~~~~~~~~~~~~~~~~--~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~---g-~~~eAi~----~~ 86 (297)
....+.|.+..+|-... ..++..++ ..+|+.+|++|++++|+++.++..++.++... + .....+. .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 45566666666644332 23344444 57799999999999999999999888877532 1 1111112 22
Q ss_pred HH--HHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHH
Q 022442 87 KS--FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN 164 (297)
Q Consensus 87 ~~--al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~n 164 (297)
+. ++...|.++ ..+..++.++...|++++|+..+++|+.++| +..++..
T Consensus 265 ~a~~a~~~~~~~a--~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~---------------------------s~~a~~l 315 (372)
T 3ly7_A 265 DNIVTLPELNNLS--IIYQIKAVSALVKGKTDESYQAINTGIDLEM---------------------------SWLNYVL 315 (372)
T ss_dssp HHHHTCGGGTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---------------------------CHHHHHH
T ss_pred HHHHhcccCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------------------------CHHHHHH
Confidence 22 223445433 3444455566667888888888888888854 2335677
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
+|.++...|++++|++.|.+|+.++|..+.
T Consensus 316 lG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 316 LGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 888888888888888888888888888765
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.04 E-value=4.3e-10 Score=82.57 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=71.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHH-HHHHHHHHHHHCCChHHHHHHHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR-LLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~-~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
.|.++...|++++|+..|+++++.. |+++. ++.++|.+|..+|++++|+.+|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--------------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--------------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5778899999999999999999874 45677 89999999999999999999999
Q ss_pred HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
++++++|++.. +.+ +.+.+++..|++++..
T Consensus 60 ~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 60 SAIELNPDSPALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred HHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 99999999987 543 5667788888777654
No 201
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.03 E-value=2.5e-10 Score=107.15 Aligned_cols=192 Identities=12% Similarity=0.063 Sum_probs=57.9
Q ss_pred cccccchhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 9 KIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS 88 (297)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~ 88 (297)
++......+.| .+++ +..++...+..+...|++++|+.+++.+++..++ +.+...|+.+|.+.|+++++++.++
T Consensus 45 ~g~~~eAIdsf---ika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~- 118 (449)
T 1b89_A 45 KGMVKEAIDSY---IKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN- 118 (449)
T ss_dssp ---------------------------------------------------------------------CHHHHTTTTT-
T ss_pred cCCHHHHHHHH---HcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-
Confidence 34444445555 3343 4447777777777888999999988888874333 4455566666666666666665543
Q ss_pred HHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442 89 FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA 168 (297)
Q Consensus 89 al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~ 168 (297)
.|+. .....+|+.+...|++++|+.+|.++-...--...+. ...+ .........+-.++.+|..++.+
T Consensus 119 ----~pn~---~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~-~Lg~----yq~AVea~~KA~~~~~Wk~v~~a 186 (449)
T 1b89_A 119 ----GPNN---AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLV-HLGE----YQAAVDGARKANSTRTWKEVCFA 186 (449)
T ss_dssp ----CC-------------------CTTTHHHHHHHTTCHHHHHHHHH-TTTC----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHH-Hhcc----HHHHHHHHHHcCCchhHHHHHHH
Confidence 2321 1223355556666666666666655300000000000 0000 00000000000234566666777
Q ss_pred HHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+...|+++.|..+... |..+|++ ...+..+|.+.|++++|+.++++++..
T Consensus 187 Cv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 7777777777666664 3344433 335778899999999999999999986
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=7.5e-10 Score=82.27 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
+|+++.+++.+|.++..+|++++|+..|++++.++|++. ..+..+|.+|...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 566666677777777777777777777777777776643 2444466667777777777777777776654
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.97 E-value=2.4e-09 Score=100.88 Aligned_cols=102 Identities=10% Similarity=-0.050 Sum_probs=80.1
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-- 188 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-- 188 (297)
..|+|++|+..|+++|++... .+...| |+...+++|||.+|..+|+|++|+.+|+++|++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~---------~lg~~H---------p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 371 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSS---------VFEDSN---------VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTT---------TBCTTS---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhC---------ccChhc---------hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 468999999999999998420 011111 223457899999999999999999999999975
Q ss_pred ---CCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCcchh
Q 022442 189 ---DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IPGCEDGR 230 (297)
Q Consensus 189 ---~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~--~~~~~~~~ 230 (297)
.|+++ . +.|||.+|..+|++++|+.+|++++... ..+++++.
T Consensus 372 ~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 56776 3 6799999999999999999999999862 23555554
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.95 E-value=1.8e-09 Score=79.10 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442 33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDS-ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~ 111 (297)
+..+..+...|++++|+..|+++++.+|+++. +++++|.++..+|++++|+..|++++.++|++.. ...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~-------- 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA--LQA-------- 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HHH--------
Confidence 34566778899999999999999999999999 9999999999999999999999999999998532 221
Q ss_pred cCCHHHHHHHHHHHHHhhc
Q 022442 112 CGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 112 ~g~~~eAi~~~~~al~~~p 130 (297)
.+.+.+++..|++++...|
T Consensus 74 ~~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 74 RKMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCc
Confidence 1677889999998888765
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=4.6e-08 Score=72.20 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022442 155 RQETSRLLGNLAWAYMQKTN---FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIP 224 (297)
Q Consensus 155 ~p~~~~~l~nLg~~y~~~g~---~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~ 224 (297)
+|+++.++..+|.++...++ .++|..++++||+++|+++. .+.||..+...|+|++|+.+|++++...+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 47889999999999976665 79999999999999999998 999999999999999999999999997444
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.87 E-value=1.1e-08 Score=96.28 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=79.6
Q ss_pred HHCCChHHHHHHHHHHHhh-----CCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh
Q 022442 74 KQLDRSEEAIEAIKSFRGL-----CSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 147 (297)
Q Consensus 74 ~~~g~~~eAi~~~~~al~~-----~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (297)
...|++++|+..+++++.+ .|+++. ....++||.+|..+|+|++|+.+|+++|++.. ......|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------~~lG~~H- 378 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS---------KHYPVYS- 378 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHSCSSC-
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH---------HHcCCCC-
Confidence 3568999999999998763 555432 23456799999999999999999999999842 0011111
Q ss_pred hhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcHH
Q 022442 148 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK 194 (297)
Q Consensus 148 ~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~~ 194 (297)
|+.+..++|||.+|..+|++++|+.+|++|+++ .|+++.
T Consensus 379 --------p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 379 --------LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred --------hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 223457899999999999999999999999986 588875
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.86 E-value=3.3e-08 Score=92.99 Aligned_cols=118 Identities=14% Similarity=-0.000 Sum_probs=88.4
Q ss_pred HHHHHHCCChHHHHHHHHHHHhh-----CCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442 70 AVVMKQLDRSEEAIEAIKSFRGL-----CSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 143 (297)
Q Consensus 70 g~~l~~~g~~~eAi~~~~~al~~-----~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~ 143 (297)
..-+..+|++++|++.+++++.. .|+++ .....++|+.+|..+|++++|+.+++++|++... ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~---------~lg 364 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI---------FFP 364 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------HSC
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH---------HcC
Confidence 34456789999999999999864 34432 2244567999999999999999999999998420 001
Q ss_pred hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcHH----HhHHHHHHHHc
Q 022442 144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK----ACNLGLCLIKR 205 (297)
Q Consensus 144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~~----~~nLg~~l~~~ 205 (297)
..| |+.+..++|||.+|..+|++++|+.+|++|+++ .|+++. ..+|+.+...+
T Consensus 365 ~~H---------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 365 GSH---------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp SSC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCC---------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 111 223457899999999999999999999999985 688874 35677776543
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.83 E-value=1.4e-08 Score=95.50 Aligned_cols=116 Identities=13% Similarity=-0.032 Sum_probs=86.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
-+..+|++++|+..++++|++... .+...| |....+++|||.+|..+|+|++|+.+|+++|+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~---------~lg~~h---------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSE---------RLPDIN---------IYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSC---------CCCTTS---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccC---------cCCccc---------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 356889999999999999987320 001111 22345899999999999999999999999997
Q ss_pred h-----CCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCcchhhHHHHHHHHHHH
Q 022442 188 I-----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IPGCEDGRTRKRAEELLLEL 242 (297)
Q Consensus 188 ~-----~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~--~~~~~~~~~~~~a~~~l~~~ 242 (297)
+ .|+++ . ++|||.+|..+|++++|+.+|++++... ..+++++. .......|..+
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~-~~~~~~~l~~~ 422 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL-IEDLILLLEEC 422 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH-HHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHH
Confidence 5 46776 3 6799999999999999999999999762 23555543 23344444444
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.81 E-value=1.5e-07 Score=86.16 Aligned_cols=146 Identities=10% Similarity=-0.096 Sum_probs=100.4
Q ss_pred HHHHcCCChHHHH--HHHHHHHHHCC---ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH----HcCCHHHHHHHHHH
Q 022442 54 KAINAGDRVDSAL--KDMAVVMKQLD---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK----KCGKVEEQIEMLKR 124 (297)
Q Consensus 54 ~al~~~p~~~~a~--~~Lg~~l~~~g---~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~----~~g~~~eAi~~~~~ 124 (297)
++....|.++++| +..|..+...+ .+.+|+.+|+++++++|+.+..... ++.+|. ..+.....+..+.+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~--la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE--KALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHhccCCCchhhHHHHHH
Confidence 3444456655553 33455555544 3589999999999999985433232 232332 11111222222222
Q ss_pred HHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHH
Q 022442 125 KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIK 204 (297)
Q Consensus 125 al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~ 204 (297)
+++. ...+...|.++.++.-+|.++...|++++|+..+++|+.++|+...+..+|.++..
T Consensus 263 a~~a--------------------~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 263 EIDN--------------------IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHH--------------------HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHH--------------------HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2221 11124457888999999999998999999999999999999874447889999999
Q ss_pred cCCHHHHHHHHHHHHhc
Q 022442 205 RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 205 ~g~~~eA~~~~~~al~~ 221 (297)
.|++++|++.|++++..
T Consensus 323 ~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999999998
No 210
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.81 E-value=3.4e-07 Score=90.82 Aligned_cols=172 Identities=13% Similarity=0.021 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHH-HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022442 47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI-EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRK 125 (297)
Q Consensus 47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi-~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~a 125 (297)
.....|++++...|..++.|...+..+...|+.++|+ .+|++++..+|.. ..+...++.+....|++++|..+|+++
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s--~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS--AVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556777777777777777777777777777777776 7777777777763 234455667777777788888777777
Q ss_pred HHhh-----------ch----------hh--hhcCcchhHHhhhh------hhHHHhcC--C-CcHHHHHHHHHHHHHCC
Q 022442 126 LRLI-----------YQ----------GE--AFNGKPTKTARSHG------KKFQVSVR--Q-ETSRLLGNLAWAYMQKT 173 (297)
Q Consensus 126 l~~~-----------p~----------~~--~~~~~~~~~~~~~~------~~~~~~l~--p-~~~~~l~nLg~~y~~~g 173 (297)
+... |. .. .+.. ..+..+..+ ..+..+++ | ....++...+.+-...+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~-y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV-YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 7642 21 00 1110 001111111 11221111 1 23445666666655655
Q ss_pred -ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 174 -NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 174 -~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++.|..+|+++++..|+++. |...+......|+.+.|..+|++++..
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 489999999999999999998 878888899999999999999999986
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.62 E-value=2.6e-06 Score=75.38 Aligned_cols=105 Identities=14% Similarity=0.049 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC-----CChHHHHHHHHHHHHh
Q 022442 114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-----TNFMAAEVVYQKAQMI 188 (297)
Q Consensus 114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~-----g~~~eA~~~y~~Al~~ 188 (297)
...+|...++++++++|.- .+..+|..||.+|... |+.++|..+|++||++
T Consensus 178 ~l~~A~a~lerAleLDP~~------------------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L 233 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSY------------------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY 233 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTH------------------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCc------------------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence 3578888888888886510 0234899999999995 9999999999999999
Q ss_pred CCCc-HH-HhHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC-Ccc----hhhHHHHHHHHHHH
Q 022442 189 DPDA-NK-ACNLGLCLIK-RTRYNEARSVLEDVLYGRIPG-CED----GRTRKRAEELLLEL 242 (297)
Q Consensus 189 ~P~~-~~-~~nLg~~l~~-~g~~~eA~~~~~~al~~~~~~-~~~----~~~~~~a~~~l~~~ 242 (297)
+|+. .. .+..|..|.. +|++++|..++++++..++.. |+. .....++..+|...
T Consensus 234 nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 234 CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHV 295 (301)
T ss_dssp CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 9975 77 8899999988 599999999999999974432 332 23344555555543
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.59 E-value=5.1e-07 Score=67.56 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
..+|..+...|+|..|+.-|++|++..++... ..+..+.++.+||.+|.++|++++|+.++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCC-------------------CcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45788999999999999999999987432110 01234678999999999999999999999
Q ss_pred HHHHHhCCCcHH-HhHHH
Q 022442 183 QKAQMIDPDANK-ACNLG 199 (297)
Q Consensus 183 ~~Al~~~P~~~~-~~nLg 199 (297)
+++++++|++.. ..|++
T Consensus 70 ~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 70 KKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHhcCCCCHHHHhhHH
Confidence 999999999998 77876
No 213
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.54 E-value=1.9e-06 Score=85.45 Aligned_cols=139 Identities=9% Similarity=-0.067 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhchhhhhc----------CcchhHHhhhhh
Q 022442 80 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI-EMLKRKLRLIYQGEAFN----------GKPTKTARSHGK 148 (297)
Q Consensus 80 ~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi-~~~~~al~~~p~~~~~~----------~~~~~~~~~~~~ 148 (297)
+....+|++++..+|..+ .++...+..+...|+.++|. .+|++|+...|....+. +...+ ++..-.
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~--~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~-aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAP--EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPE-IETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH-HHHHHH
Confidence 356788999999999743 45555788888999999997 99999999888543211 11111 111111
Q ss_pred hHHHh----c------CCC-----------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CcHH-HhHHHHHHHHc
Q 022442 149 KFQVS----V------RQE-----------TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANK-ACNLGLCLIKR 205 (297)
Q Consensus 149 ~~~~~----l------~p~-----------~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-~~~~-~~nLg~~l~~~ 205 (297)
..... + .|. ...+|...+.+..+.|..+.|..+|.+|++..| .... +...+.+-...
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 10001 0 142 345788888888889999999999999999833 3344 66666666666
Q ss_pred C-CHHHHHHHHHHHHhc
Q 022442 206 T-RYNEARSVLEDVLYG 221 (297)
Q Consensus 206 g-~~~eA~~~~~~al~~ 221 (297)
| +++.|..+|++++..
T Consensus 483 ~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY 499 (679)
T ss_dssp TSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 5 499999999999986
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.51 E-value=1.6e-05 Score=76.05 Aligned_cols=159 Identities=12% Similarity=0.003 Sum_probs=124.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHhh--CCcchHHH
Q 022442 34 RAKHAQLVQKDPEAAIVLFWKAINA--GDRVDSALKDMAVVMKQLDR---------SEEAIEAIKSFRGL--CSKQSQES 100 (297)
Q Consensus 34 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~Lg~~l~~~g~---------~~eAi~~~~~al~~--~P~~~~~~ 100 (297)
.......+.|++++|+.+|++.... .|+. .++..|-.++...++ .++|.++|++.... .|+ ..
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---~~ 106 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---EA 106 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---HH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---HH
Confidence 3344456789999999999988773 4553 456656556655544 68899999987764 455 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
.++.+...|.+.|++++|..++++..+.. +.| +..+++.|=..|.+.|+.++|..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHHHCCCHHHHHH
Confidence 66778899999999999999999977641 111 23477888889999999999999
Q ss_pred HHHHHHHh--CCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 181 VYQKAQMI--DPDANKACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 181 ~y~~Al~~--~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+|++..+. .|+...+..|-.+|.+.|+.++|..++++..+.
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99998874 677777888999999999999999999998875
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.50 E-value=5.1e-07 Score=66.47 Aligned_cols=51 Identities=18% Similarity=0.038 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
.++|..+++++++.+|+++.++..+|.++.+.|+|++|+..+++++..+|.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344555555555555555555555555555555555555555555544443
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=1.8e-06 Score=69.24 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhC-C-CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcch
Q 022442 156 QETSRLLGNLAWAYMQKT---NFMAAEVVYQKAQMID-P-DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDG 229 (297)
Q Consensus 156 p~~~~~l~nLg~~y~~~g---~~~eA~~~y~~Al~~~-P-~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~ 229 (297)
|.+.++.+++||++.+.+ +..+++..++.+++.+ | ++.+ +++||..+.++|+|++|..+++++++. +|.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i---eP~n~ 105 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNN 105 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCH
Confidence 446789999999999998 6679999999999999 8 4456 999999999999999999999999998 56544
Q ss_pred hhHHHHHHHHHHH
Q 022442 230 RTRKRAEELLLEL 242 (297)
Q Consensus 230 ~~~~~a~~~l~~~ 242 (297)
. |.++...+
T Consensus 106 Q----A~~Lk~~i 114 (152)
T 1pc2_A 106 Q----AKELERLI 114 (152)
T ss_dssp H----HHHHHHHH
T ss_pred H----HHHHHHHH
Confidence 3 66665555
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.45 E-value=1.6e-06 Score=76.77 Aligned_cols=110 Identities=16% Similarity=0.087 Sum_probs=90.0
Q ss_pred cCCChHHHHHHHHHHHHH---C--C------ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 022442 58 AGDRVDSALKDMAVVMKQ---L--D------RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-----GKVEEQIEM 121 (297)
Q Consensus 58 ~~p~~~~a~~~Lg~~l~~---~--g------~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~-----g~~~eAi~~ 121 (297)
.+|++.++++-.|.+... . | ...+|...++++++++|+..+...+..||.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 466778888888877644 2 3 35788889999999999843446777899999995 999999999
Q ss_pred HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH-CCChHHHHHHHHHHHHhCCCc
Q 022442 122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ-KTNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~-~g~~~eA~~~y~~Al~~~P~~ 192 (297)
|++||+++|.+ +..+++..|..|.. +|++++|..++++|+..+|..
T Consensus 227 ferAL~LnP~~-------------------------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAH-------------------------DPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTT-------------------------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCC-------------------------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999997621 24678889999977 599999999999999999886
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.32 E-value=5.3e-06 Score=61.88 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMID-------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~-------P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.-.+.||..+.+.|+|..|+..|++|+... +.... +.+||.++.++|++++|+.++++++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3456889999999999999999999999974 23445 789999999999999999999999987
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=1.5e-05 Score=63.87 Aligned_cols=86 Identities=13% Similarity=0.003 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 44 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD---RSEEAIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 44 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g---~~~eAi~~~~~al~~~-P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
....+...|.+.+..+|...++.+++|.++.+.+ +.+++|..++.+++.. |.+ .....+.||..|.+.|+|++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHccCHHHHH
Confidence 3455677777777778888888888888888887 5668888888888877 632 2334455788888888888888
Q ss_pred HHHHHHHHhhc
Q 022442 120 EMLKRKLRLIY 130 (297)
Q Consensus 120 ~~~~~al~~~p 130 (297)
.+++++|++.|
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 88888888866
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.10 E-value=0.00021 Score=68.23 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=114.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhhchhhh
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGK---------VEEQIEMLKRKLRLIYQGEA 134 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~--~P~~~~~~l~~~L~~ly~~~g~---------~~eAi~~~~~al~~~p~~~~ 134 (297)
+..+=..+.+.|+.++|+++|++.... .|+ ...++.|..+|...++ +++|.++|++.....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G----- 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK----- 100 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-----
Confidence 455557788999999999999998765 454 3455666667766554 688888888866541
Q ss_pred hcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCcHHHhHHHHHHHHcCCHHHHH
Q 022442 135 FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--DPDANKACNLGLCLIKRTRYNEAR 212 (297)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~--~P~~~~~~nLg~~l~~~g~~~eA~ 212 (297)
+.| +..+++.|-.+|.+.|++++|+.+|++..+. .|+...+..|-..|.+.|+.++|.
T Consensus 101 -------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 101 -------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp -------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 112 2357888999999999999999999998874 577767888899999999999999
Q ss_pred HHHHHHHhcC-CCCCc----------chhhHHHHHHHHHHHHhcC
Q 022442 213 SVLEDVLYGR-IPGCE----------DGRTRKRAEELLLELESKQ 246 (297)
Q Consensus 213 ~~~~~al~~~-~~~~~----------~~~~~~~a~~~l~~~~~~~ 246 (297)
.+|++..... .|+.. .....++|.+++..+....
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 9999988752 11111 2456678888888886443
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.06 E-value=0.0002 Score=68.30 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022442 46 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRK 125 (297)
Q Consensus 46 ~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~a 125 (297)
+.....|++++...|..+..|...+..+.+.|+.++|..+|++++.. |.+.. +....+.. .+.+ +. +++.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~--l~~~y~~~-~e~~---~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF--LSLYYGLV-MDEE---AV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH--HHHHHHHH-TTCT---HH---HHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH--HHHHHHhh-cchh---HH---HHHH
Confidence 45678999999999999999999999999999999999999999999 97432 22212111 0111 11 1111
Q ss_pred HHhh-----------ch---hhhhcCcchhHHhhhh------hhHHHhcCCC-cHHHHHHHHHHHHHCC-ChHHHHHHHH
Q 022442 126 LRLI-----------YQ---GEAFNGKPTKTARSHG------KKFQVSVRQE-TSRLLGNLAWAYMQKT-NFMAAEVVYQ 183 (297)
Q Consensus 126 l~~~-----------p~---~~~~~~~~~~~~~~~~------~~~~~~l~p~-~~~~l~nLg~~y~~~g-~~~eA~~~y~ 183 (297)
.... +. ...+... .+..+..+ ..+.....|. ...++...+.+-...+ +.+.|..+|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y-~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINH-LNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHH-HHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 1100 00 0000000 00000000 0111111121 3345544454444445 6999999999
Q ss_pred HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
++++..|+++. |...+......|+.+.|..+|+++
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988 777888889999999999888886
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.62 E-value=0.0027 Score=60.35 Aligned_cols=193 Identities=9% Similarity=-0.019 Sum_probs=113.1
Q ss_pred hhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Q 022442 17 DLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-- 93 (297)
Q Consensus 17 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-- 93 (297)
..| ..+..+|..+.............|+.+.|...|++|+.. |.....+...+... .. ++....+.......
T Consensus 200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~---~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DE---EAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TC---THHHHHHHHHTC----
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-ch---hHHHHHHHHHHHhhcc
Confidence 355 445556766555555566677889999999999999999 98765554433321 11 11111111111001
Q ss_pred ------CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh--hhc--Ccch-hHHhhhh---hhHH--HhcCCC
Q 022442 94 ------SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE--AFN--GKPT-KTARSHG---KKFQ--VSVRQE 157 (297)
Q Consensus 94 ------P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~--~~~--~~~~-~~~~~~~---~~~~--~~l~p~ 157 (297)
+......++...+....+.|..+.|..+|.++ . .|... .+. .... ....+.. ..+. +..-|+
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 11111233333455566677788888888887 3 23210 000 0000 0000000 1121 222366
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
.+..+...+......|+.+.|..+|+++ +.... |......-...|+.+.+..++++.+.
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777788888899999999999998 44566 66777777788999999999998875
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.50 E-value=0.0012 Score=51.07 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=65.6
Q ss_pred CcHHHHHHHHHHHHHCCChHH---HHHHHHHHHHhC-CCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchh
Q 022442 157 ETSRLLGNLAWAYMQKTNFMA---AEVVYQKAQMID-PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGR 230 (297)
Q Consensus 157 ~~~~~l~nLg~~y~~~g~~~e---A~~~y~~Al~~~-P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~ 230 (297)
....+.+++||++.......+ ++.+++..+..+ |... + .+.||..+.++|+|++|..+++.+|+. .|.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~---eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCHH
Confidence 356789999999999998888 999999999987 6444 5 889999999999999999999999997 555443
Q ss_pred hHHHHHHHHHHHH
Q 022442 231 TRKRAEELLLELE 243 (297)
Q Consensus 231 ~~~~a~~~l~~~~ 243 (297)
|..+...+.
T Consensus 110 ----A~~Lk~~i~ 118 (126)
T 1nzn_A 110 ----AKELERLID 118 (126)
T ss_dssp ----HHHHHHHHH
T ss_pred ----HHHHHHHHH
Confidence 555555443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.39 E-value=0.0065 Score=48.25 Aligned_cols=109 Identities=9% Similarity=0.060 Sum_probs=80.5
Q ss_pred hCCcchHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH
Q 022442 92 LCSKQSQESLDNVLIDLYKKCGKV------EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL 165 (297)
Q Consensus 92 ~~P~~~~~~l~~~L~~ly~~~g~~------~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL 165 (297)
..|++.. .+.. ...+..+.|+. +.-+++|++|+...|++. . .+.+.+ ..+|...
T Consensus 8 ~~p~~yd-~W~~-yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~--------~~wrrY--------I~LWIrY 67 (161)
T 4h7y_A 8 MMANNPE-DWLS-LLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--Y--------GQNESF--------ARIQVRF 67 (161)
T ss_dssp --CCSHH-HHHH-HHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--G--------TTCHHH--------HHHHHHH
T ss_pred eCCCCHH-HHHH-HHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--c--------ccHHHH--------HHHHHHH
Confidence 3455433 3333 23455666888 888899999999988653 1 111211 2356666
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.. ...++.++|..+|+.++.+....+. |...|..-.++|+...|..++.+++..
T Consensus 68 A~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 68 AEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 644 6779999999999999999888877 999999999999999999999999996
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.26 E-value=0.0031 Score=48.64 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHH---HHHHHHHHHhhC-CcchHHHHHHHHHHHHHHcCCHHHH
Q 022442 43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEE---AIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEEQ 118 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~e---Ai~~~~~al~~~-P~~~~~~l~~~L~~ly~~~g~~~eA 118 (297)
.....+...|.+.+..++...++.+++|.++.......+ +|.+++..+... |.. .....+.||..+.+.|+|++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHhhhHHHH
Confidence 445667788888888788888999999999999888777 999999988877 532 234445588889999999999
Q ss_pred HHHHHHHHHhhc
Q 022442 119 IEMLKRKLRLIY 130 (297)
Q Consensus 119 i~~~~~al~~~p 130 (297)
..+.+..|++.|
T Consensus 94 ~~~~~~lL~~eP 105 (126)
T 1nzn_A 94 LKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 999999999876
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.26 E-value=0.0024 Score=51.57 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=70.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442 107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186 (297)
Q Consensus 107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al 186 (297)
..+...|.|+.|+-....++.+...+..... + . ....++..+|.+++..|+|..|+..|++||
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-p-------~---------~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-P-------P---------QKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-H-------H---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCccccc-H-------H---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4457889999999999998887421100000 0 0 013478999999999999999999999998
Q ss_pred HhC------CC-------------------cHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 187 MID------PD-------------------ANK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 187 ~~~------P~-------------------~~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
... |. ..+ .+.++.||.++|++.+|+.+++.+
T Consensus 91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 642 11 114 578999999999999999998764
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.23 E-value=0.012 Score=46.77 Aligned_cols=124 Identities=6% Similarity=-0.036 Sum_probs=93.4
Q ss_pred HcCCChHHHHHHHHHHHHHCCCh------HHHHHHHHHHHhhCCcc----h--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442 57 NAGDRVDSALKDMAVVMKQLDRS------EEAIEAIKSFRGLCSKQ----S--QESLDNVLIDLYKKCGKVEEQIEMLKR 124 (297)
Q Consensus 57 ~~~p~~~~a~~~Lg~~l~~~g~~------~eAi~~~~~al~~~P~~----~--~~~l~~~L~~ly~~~g~~~eAi~~~~~ 124 (297)
-..|++++.|......+-..|+. ++-++.|++++..-|.. + ...+....+ ++...++.++|-++|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence 35799999999988888888999 89999999999877742 1 111111122 34677899999999999
Q ss_pred HHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHH
Q 022442 125 KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIK 204 (297)
Q Consensus 125 al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~ 204 (297)
++.+. ..++.+|...|..-.++|+.+.|...+.+|+.+.|........+..-++
T Consensus 86 a~~~h--------------------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 86 ARANC--------------------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHHHC--------------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred HHHHh--------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 98862 1245688888998899999999999999999999988776666665555
Q ss_pred cCC
Q 022442 205 RTR 207 (297)
Q Consensus 205 ~g~ 207 (297)
.|.
T Consensus 140 ~~~ 142 (161)
T 4h7y_A 140 LQK 142 (161)
T ss_dssp TTC
T ss_pred cCC
Confidence 554
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.13 E-value=0.0058 Score=47.44 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhH
Q 022442 158 TSRLLGNLAWAYMQKTNF---MAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTR 232 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~---~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 232 (297)
.+.+.+++||++...... .+++.+++..+..+|... + ++-||..+.++|+|++|..+.+.++.. .|.+.+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---eP~N~Q-- 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ-- 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CTTCHH--
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---CCCCHH--
Confidence 457899999999988755 479999999999999665 5 889999999999999999999999997 555543
Q ss_pred HHHHHHHHHHH
Q 022442 233 KRAEELLLELE 243 (297)
Q Consensus 233 ~~a~~~l~~~~ 243 (297)
|..+...+.
T Consensus 114 --A~~Lk~~Ie 122 (134)
T 3o48_A 114 --VGALKSMVE 122 (134)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 555555553
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.12 E-value=0.0072 Score=47.50 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHHHHCCChH---HHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhH
Q 022442 158 TSRLLGNLAWAYMQKTNFM---AAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTR 232 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g~~~---eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 232 (297)
.+.+.++++|++......+ +++.+++..+...|... + .+.||..+.++|+|++|..+.+.+|+. +|.+.+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n~Q-- 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ-- 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCCHH--
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcHH--
Confidence 5678999999999987665 79999999999999766 5 889999999999999999999999997 565543
Q ss_pred HHHHHHHHHHH
Q 022442 233 KRAEELLLELE 243 (297)
Q Consensus 233 ~~a~~~l~~~~ 243 (297)
|..+...+.
T Consensus 113 --A~~Lk~~Ie 121 (144)
T 1y8m_A 113 --VGALKSMVE 121 (144)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 555555443
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.021 Score=57.01 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=84.9
Q ss_pred HCCC-hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhchh-hhhcCcchhHHhhhhhhHH
Q 022442 75 QLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGKKFQ 151 (297)
Q Consensus 75 ~~g~-~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~-g~~~eAi~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~ 151 (297)
..|+ ++.|+..++++....|.... .+...+..++... .+--+|+.++.++++-.... .......... .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~-------~- 330 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS-------A- 330 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH-------H-
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc-------c-
Confidence 3455 58899999999999996211 1111122222222 34557888888887632100 0000000000 0
Q ss_pred HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442 152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV 218 (297)
Q Consensus 152 ~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a 218 (297)
.+.|-....+.-=+..+...|+|+-|+.+-++|+.+.|+... |..|+.||+.+|+++.|+-.+...
T Consensus 331 -~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 -RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred -cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 000111223444467778899999999999999999999988 999999999999999999887654
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.66 E-value=0.012 Score=47.54 Aligned_cols=94 Identities=12% Similarity=-0.010 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---Ccc--
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---SKQ-- 96 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~---P~~-- 96 (297)
+++.-....+..|.++.|+-+...++....++ ..++..+|.++...|+|.+|...|++++... |+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46666677788999999999999977753322 3478899999999999999999999875321 111
Q ss_pred ------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442 97 ------------------SQESLDNVLIDLYKKCGKVEEQIEMLKR 124 (297)
Q Consensus 97 ------------------~~~~l~~~L~~ly~~~g~~~eAi~~~~~ 124 (297)
....+-+-++.+|.+.|++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1124556689999999999999987655
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.37 E-value=0.09 Score=48.22 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=73.1
Q ss_pred HcCCHHHHHHHHHHHHHhhchhhhhcCcc-hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKP-TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~-~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
..|+.++|+..+++|+.+. .+..+.+.. ..........+. .....++..++.++...|++.+|+..+++++..+
T Consensus 127 ~~~~~~~a~~~l~~Al~L~-rG~~L~~~~~~~w~~~~r~~l~----~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREW-RGPVLDDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTC-CSSTTGGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhc-CCCCCCCCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4578888888888888773 222111100 000000000000 0112356778899999999999999999999999
Q ss_pred CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 190 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 190 P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
|-+.. +..|-.+|...|+..+|+..|+++..
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998 88999999999999999999988664
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.32 E-value=0.06 Score=49.38 Aligned_cols=88 Identities=15% Similarity=0.033 Sum_probs=70.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC----------h------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDR----------V------------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~----------~------------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
....|+.+.|...+++|+.+-.. . ..++..++..+...|++++|+..++.++..+|-+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34578999999999999985211 1 1234457788899999999999999999999963
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
+.++..|..+|...|+..+|+..|++.-+.
T Consensus 205 --E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 205 --EPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp --HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666778899999999999999997664
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.23 Score=48.82 Aligned_cols=112 Identities=19% Similarity=0.036 Sum_probs=64.7
Q ss_pred HHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442 74 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 153 (297)
Q Consensus 74 ~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (297)
...|++++|.+..+ .+.. ...+..||..+.+.|+++.|+.+|.++=... + ...+.
T Consensus 663 l~~~~~~~A~~~~~---~~~~----~~~W~~la~~al~~~~~~~A~~~y~~~~d~~--~----------------l~~l~ 717 (814)
T 3mkq_A 663 LKVGQLTLARDLLT---DESA----EMKWRALGDASLQRFNFKLAIEAFTNAHDLE--S----------------LFLLH 717 (814)
T ss_dssp HHHTCHHHHHHHHT---TCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH--H----------------HHHHH
T ss_pred hhcCCHHHHHHHHH---hhCc----HhHHHHHHHHHHHcCCHHHHHHHHHHccChh--h----------------hHHHH
Confidence 44566666655432 2222 2344568999999999999999999853321 0 00011
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHH
Q 022442 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
...++.+.+..++......|++..|..+|.+. .+ ....-.+|.+.|++++|..+-++
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~--~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD--IQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC--HHHHHHHHHHcCChHHHHHHHHH
Confidence 11234455667777777788888777766552 11 12223346666777776665544
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.80 E-value=0.27 Score=48.27 Aligned_cols=46 Identities=17% Similarity=0.022 Sum_probs=36.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF 89 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a 89 (297)
++.-|+++.|.+..+ ..+.+..|..||..+.+.|+++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 445566666666543 2356778999999999999999999999875
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.62 E-value=0.095 Score=40.58 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 32 YVRAKHAQLVQKD---PEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 32 ~~~~~~~~~~~g~---~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
-|+.....+..++ ...++.+++..++.+| ...+.++.||+.+.++|+|.+|....+.+++..|++
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3344444444433 3458888888887777 457788888888888888888888888888888864
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.59 E-value=0.14 Score=40.08 Aligned_cols=68 Identities=7% Similarity=0.019 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442 29 DGPYVRAKHAQLVQKD---PEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96 (297)
Q Consensus 29 ~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~ 96 (297)
..+-|+.....+...+ ..+++.+++..++.+| ...+.++.||+.+.++|+|.+|....+.+++..|++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3344455445554443 4458888888887776 567788888888888888888888888888888864
No 238
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.56 E-value=0.12 Score=53.15 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
..++.|.+.|.+.|+.++|..++.+.-+....+ +.| +..+|+.|=..|.+.|+.++|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---------------------~~P-dvvTYNtLI~Glck~G~~~eA~ 185 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---------------------KLL-TLDMYNAVMLGWARQGAFKELV 185 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---------------------TTC-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---------------------CCC-CHhHHHHHHHHHHhCCCHHHHH
Confidence 346778899999999999999997754431000 001 2347888999999999999999
Q ss_pred HHHHHHHH--hCCCcHHHhHHHHHHHHcCCH-HHHHHHHHHHHhc
Q 022442 180 VVYQKAQM--IDPDANKACNLGLCLIKRTRY-NEARSVLEDVLYG 221 (297)
Q Consensus 180 ~~y~~Al~--~~P~~~~~~nLg~~l~~~g~~-~eA~~~~~~al~~ 221 (297)
.+|++..+ +.||-..+..|-.++.+.|+. ++|..++++....
T Consensus 186 ~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 99999987 468887788888899999985 7889999998875
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.27 Score=40.03 Aligned_cols=102 Identities=12% Similarity=0.020 Sum_probs=61.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442 37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE 116 (297)
Q Consensus 37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~ 116 (297)
.+++.-|+++.|.+..+.. +...-|..||.....+|+++=|+.+|+++-... . |.-+|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------~----L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFD------K----LSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------H----HHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH------H----HHHHHHHhCCHH
Confidence 3566778888888776643 456678888888888888888888877643221 1 223455666665
Q ss_pred HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442 117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184 (297)
Q Consensus 117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~ 184 (297)
.-...-+.+.... -++....++..+|+++++++.|.+
T Consensus 78 ~L~kla~iA~~~g-------------------------------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE-------------------------------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT-------------------------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-------------------------------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443322222210 022234566788888888877654
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.38 E-value=0.34 Score=42.09 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=53.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
.+..|++++|+......|+.+|.+++.-..|-.+|.-.|+++.|..-++.+.+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 457899999999999999999999999999999999999999999999999999997
No 241
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.34 E-value=0.077 Score=50.41 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR 222 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~ 222 (297)
..+..||.+..-...++.|..+|++|+.+.|++.. ++.||.+....|+.-+|+-+|-+++...
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~ 216 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999999998 8999999999999999999999999863
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.90 E-value=0.54 Score=38.16 Aligned_cols=138 Identities=16% Similarity=-0.034 Sum_probs=89.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442 41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~ 120 (297)
+-.|++.++=+--- +-|..++.-..+++++.-.|.+..++-++. .++- ..+++. -.-+|.+.+++..|+.
T Consensus 14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lNT---~Ts~YY-k~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLH---KLNT---CTSKYY-ESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHH---TCCB---HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHH---hcch---HHHHHH-HHHHHHHHHHHHHHHH
Confidence 44677766532211 234444556778999999999999987643 2322 234443 3568899999999999
Q ss_pred HHHHHHHhhchhhhhcCcchhHHhhhhhhHH-HhcCCCcHHHHH-HHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442 121 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLG-NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL 198 (297)
Q Consensus 121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~l~-nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL 198 (297)
++++.|.-.-+.. .......+ .-++|.+.+... -+|.++.+.|..+||+.+|......+|=.+..-||
T Consensus 84 ~le~il~~kvd~d----------~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl 153 (242)
T 3kae_A 84 SLESILEGKVERD----------PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL 153 (242)
T ss_dssp HHHHHHTTCSBCC----------CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcccccC----------cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence 9999985310000 00000111 244566666554 57999999999999999999999999987764443
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.85 E-value=1.4 Score=40.35 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHH-----HHHHHHHHHH-CCChHHHHHHHHHHHhhCCcc--hH--HH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSA-----LKDMAVVMKQ-LDRSEEAIEAIKSFRGLCSKQ--SQ--ES 100 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~Lg~~l~~-~g~~~eAi~~~~~al~~~P~~--~~--~~ 100 (297)
+...++.++...|+.++-..++......-+..+.+ ...|-..+.. -|..+.=++++..+++-.-.+ .. ..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888887776654433222222 2223223322 244555566666666543321 11 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV 180 (297)
Q Consensus 101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~ 180 (297)
+..-||.+|...|+|.+|..++.+.++-... ...+.. ..+++..-..+|..++++..+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-------------~dd~~~-------llev~lle~~~~~~~~n~~k~k~ 160 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKK-------------LDDKNL-------LVEVQLLESKTYHALSNLPKARA 160 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-------------SSCTHH-------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-------------cccchh-------HHHHHHHHHHHHHHhccHHHHHH
Confidence 3335899999999999999999998875321 001111 12467778889999999999999
Q ss_pred HHHHHHHhC---CCcH---H--HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442 181 VYQKAQMID---PDAN---K--ACNLGLCLI-KRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 181 ~y~~Al~~~---P~~~---~--~~nLg~~l~-~~g~~~eA~~~~~~al~~ 221 (297)
.|.+|.... +-++ . ...-|..++ ..++|.+|...|-++...
T Consensus 161 ~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 161 ALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 999998654 1222 1 234588888 899999999999888754
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.69 Score=46.07 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=79.8
Q ss_pred cCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCChHHHHHHHHHHHh--------hCCcchH--------HHH
Q 022442 42 QKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMK---QLDRSEEAIEAIKSFRG--------LCSKQSQ--------ESL 101 (297)
Q Consensus 42 ~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~---~~g~~~eAi~~~~~al~--------~~P~~~~--------~~l 101 (297)
.++ .+.|+.++++....+|..... ...+.+.. ...+--+|+.++.+.++ +.+.+.. ..+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 588999999999988876533 22232222 12334566666666553 2222211 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV 181 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~ 181 (297)
...-+.-+..+|+++-|+.+-++|+...| ..-..|..|+.||..+|+|+.|+-.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aP--------------------------seF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELAL--------------------------DSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------------------------SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCc--------------------------hhhHHHHHHHHHHHHhccHHHHHHH
Confidence 33346667789999999999999999865 3446899999999999999999988
Q ss_pred HHHH
Q 022442 182 YQKA 185 (297)
Q Consensus 182 y~~A 185 (297)
+..+
T Consensus 394 LNSc 397 (754)
T 4gns_B 394 INSM 397 (754)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 7765
No 245
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.49 E-value=0.37 Score=49.57 Aligned_cols=101 Identities=10% Similarity=-0.069 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh-----hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442 65 ALKDMAVVMKQLDRSEEAIEAIKSFRG-----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP 139 (297)
Q Consensus 65 a~~~Lg~~l~~~g~~~eAi~~~~~al~-----~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~ 139 (297)
.+..|-..|.+.|+.++|..+|+.... ..|+ ...++.|.+.|.+.|++++|.++|++..+.-
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G---------- 195 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAG---------- 195 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------
Confidence 466677889999999999999976432 3565 3567778888999999999999999976641
Q ss_pred hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh-HHHHHHHHHHHHh--CCCcH
Q 022442 140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-MAAEVVYQKAQMI--DPDAN 193 (297)
Q Consensus 140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~-~eA~~~y~~Al~~--~P~~~ 193 (297)
+.| +.-+++.|=.++.+.|+. ++|..+|++..+. .||..
T Consensus 196 --------------~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 196 --------------LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp --------------CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred --------------CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 112 233566666678888875 7888999988874 45544
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.06 E-value=0.33 Score=46.02 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442 103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY 182 (297)
Q Consensus 103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y 182 (297)
..||++.+....++.|...|.+|+.+.| ++-..++.||.+....|+.-+|+-+|
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P--------------------------~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVP--------------------------SNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCC--------------------------CCCchHHHHHHHHhcccccHHHHHHH
Confidence 4589999999999999999999999866 34458899999999999999999999
Q ss_pred HHHHHhCCCcHH-HhHHHHHHHH
Q 022442 183 QKAQMIDPDANK-ACNLGLCLIK 204 (297)
Q Consensus 183 ~~Al~~~P~~~~-~~nLg~~l~~ 204 (297)
-|++....-.+. ..||...+.+
T Consensus 210 ~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 210 CRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChhHHHHHHHHHHH
Confidence 999988766776 7788777754
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.02 E-value=3.8 Score=37.99 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~ 179 (297)
.+...|+.+|...|++.+|..++.....-.. ....+.. -.+++.--..+|...+++..|.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-------------~~~~~~~-------kve~~l~q~rl~l~~~d~~~a~ 197 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETY-------------GSMEMSE-------KIQFILEQMELSILKGDYSQAT 197 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-------------SSSCHHH-------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-------------hcccHHH-------HHHHHHHHHHHHHHCCCHHHHH
Confidence 4456789999999999999999998654210 0001111 1235666788899999999999
Q ss_pred HHHHHHHH---hCCCcH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 180 VVYQKAQM---IDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 180 ~~y~~Al~---~~P~~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
..++++.. -.+.++ . ..-.|..+...++|.+|...|..+...
T Consensus 198 ~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 198 VLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999743 233333 2 235688999999999999999999874
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.2 Score=46.49 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
...++..+|..+...|++++|+++|.++...+... ...........++...+++..+...++++-.+...+. .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~----d-- 203 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG----D-- 203 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC----C--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC----C--
Confidence 45578889999999999999999999998876531 1234445566788899999999999999877632110 0
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID 189 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~ 189 (297)
... .......-|.++...++|.+|-..|..++...
T Consensus 204 ------~~~--------~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 204 ------WER--------RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp ------THH--------HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred ------HHH--------HHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 000 01234556888899999999999999988754
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.35 E-value=1.2 Score=40.82 Aligned_cols=127 Identities=9% Similarity=-0.034 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHcCCCh--H--H--HHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHHHHHHHc
Q 022442 43 KDPEAAIVLFWKAINAGDRV--D--S--ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKC 112 (297)
Q Consensus 43 g~~~~A~~~~~~al~~~p~~--~--~--a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~~ly~~~ 112 (297)
+..+.-+..+...++..-+. . . .-..||.+|...|+|.+|.+.+.+++.-... .....++..-..+|...
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~ 152 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 152 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence 44555555666655521111 1 1 2237899999999999999999887764432 12234455567889999
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHH-HCCChHHHHHHHHHHHHh
Q 022442 113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM-QKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~-~~g~~~eA~~~y~~Al~~ 188 (297)
|++.++...|.++..... ..+. ++. . .+.+...-|..++ ..++|.+|...|-++++-
T Consensus 153 ~n~~k~k~~l~~a~~~~~--ai~~---------~p~-i-------~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 153 SNLPKARAALTSARTTAN--AIYC---------PPK-V-------QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp TCHHHHHHHHHHHHHHHH--HSCC---------CHH-H-------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhc--cCCC---------CHH-H-------HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 999999999999987631 0000 000 0 1224455688889 899999999999999854
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.12 Score=49.13 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHcCCHHHHHHHHHHHHH-----------cCCChHHHHHHHHHHHHHCCChHHHHH--------------HHHHH-Hhh
Q 022442 39 QLVQKDPEAAIVLFWKAIN-----------AGDRVDSALKDMAVVMKQLDRSEEAIE--------------AIKSF-RGL 92 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~-----------~~p~~~~a~~~Lg~~l~~~g~~~eAi~--------------~~~~a-l~~ 92 (297)
.+..+++++|..+-...+. +|+-.+..|+..+.++-..|+..+... .++.+ +..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3467888888887765541 245566778888888888888766421 12221 122
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442 93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK 172 (297)
Q Consensus 93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~ 172 (297)
++ +.+..+.+.+...|...+.++.|..+..++. .|...+-+ ++....++.+|.++.-+
T Consensus 226 D~-~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn-------------------~q~~rY~YY~GRI~a~q 283 (523)
T 4b4t_S 226 DN-ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSS-------------------SLEARYFFYLSKINAIQ 283 (523)
T ss_dssp SS-CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCH-------------------HHHHHHHHHHHHHHHHT
T ss_pred Cc-chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCH-------------------HHHHHHHHHHHHHHHHh
Confidence 23 3567888889999999999999999998864 34211100 01235678899999999
Q ss_pred CChHHHHHHHHHHHHhCCCc
Q 022442 173 TNFMAAEVVYQKAQMIDPDA 192 (297)
Q Consensus 173 g~~~eA~~~y~~Al~~~P~~ 192 (297)
++|.+|..++..|+..-|.+
T Consensus 284 ~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 284 LDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp TCHHHHHHHHHHHTSSCSCS
T ss_pred ccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999987754
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.90 E-value=2.2 Score=34.58 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126 (297)
Q Consensus 63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al 126 (297)
++.-+.++ .+.|+++.|.+..+.. +- ...+..||..-..+|+++-|+.+|.++=
T Consensus 8 ~~~rF~LA---L~lg~l~~A~e~a~~l---~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 8 PHIRFDLA---LEYGNLDAALDEAKKL---ND----SITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHH---HHTTCHHHHHHHHHHH---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hHHHHHHH---HhcCCHHHHHHHHHHh---CC----HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34444444 4679999999886654 22 2344558888899999999999998843
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.46 E-value=8.8 Score=33.86 Aligned_cols=161 Identities=14% Similarity=0.036 Sum_probs=90.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH----HhhCCcchHHHHHHHHHHHHHHcCC
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLIDLYKKCGK 114 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a----l~~~P~~~~~~l~~~L~~ly~~~g~ 114 (297)
.+.+|++=+|-+.|+. +..=|.+++++++|++++... ++..-...-..+...+.++|.+.+-
T Consensus 23 ~I~~G~yYEAhQ~~Rt--------------l~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRT--------------IANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp HHHHTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhccChHHHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 4566777777777753 566677889999999986543 2222222223455556677777654
Q ss_pred H--HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH--Hhc---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-
Q 022442 115 V--EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ--VSV---RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ- 186 (297)
Q Consensus 115 ~--~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~l---~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al- 186 (297)
. ++.+.-+.+.+...|+..... .+.. ..... ... .-.++..|..+|..|.+.|++.+|..+|-..-
T Consensus 89 ~~~~~~~~rl~~l~~~~p~~~~~r---~~fi---~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~ 162 (312)
T 2wpv_A 89 KVDDISVARLVRLIAELDPSEPNL---KDVI---TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH 162 (312)
T ss_dssp CCSHHHHHHHHHHHTTCCTTCTTH---HHHH---HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH
T ss_pred CCCHHHHHHHHHHHHHCCCCCchH---HHHH---HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Confidence 3 444554555555444321100 0000 00000 011 12478899999999999999999999985221
Q ss_pred ---------------H---hCCCcHH-HhH-HHHHHHHcCCHHHHHHHHHHHH
Q 022442 187 ---------------M---IDPDANK-ACN-LGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 187 ---------------~---~~P~~~~-~~n-Lg~~l~~~g~~~eA~~~~~~al 219 (297)
+ -.|...+ +.. ....|...|+...|...+....
T Consensus 163 ~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 163 DSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1 1122222 222 2335566777777777766543
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.22 E-value=2 Score=37.23 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=45.7
Q ss_pred HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.+.|..++|+......++-+|.|.. ...|..+|.-.|+++.|..-++-+...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45678888999999999999999888 788888888899999999888888886
No 254
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=87.91 E-value=12 Score=31.90 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHH-----hCCCcHH----HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442 176 MAAEVVYQKAQM-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 176 ~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~~-~g~~~eA~~~~~~al~~ 221 (297)
+.|..+|++|.+ +.|.+|. .+|.+.+|.. +++.++|..+.++++..
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678889999875 5788984 4577776665 79999999988877653
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.26 E-value=3.2 Score=43.29 Aligned_cols=140 Identities=9% Similarity=0.049 Sum_probs=89.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh
Q 022442 68 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 147 (297)
Q Consensus 68 ~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (297)
.+...+...|.++-+.+ ....+|.++. ..+++|.+|...|++++|..+|+++-.-............. ..
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~--~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~----~~ 886 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPI--AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE----FQ 886 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH----HH
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcH--HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc----cc
Confidence 45556677777766544 4456665432 23678999999999999999999864321110000000000 00
Q ss_pred hhHH-HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CcH----H-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 148 KKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DAN----K-ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 148 ~~~~-~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-~~~----~-~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
.... .......+..+..+..++.+.+-++.+++.-+.|++..+ ++. . |.++-......|+|++|...+-.
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 0000 011122345677788899999999999999999998764 333 2 56788889999999999777643
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.70 E-value=11 Score=34.81 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh----hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442 65 ALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT 140 (297)
Q Consensus 65 a~~~Lg~~l~~~g~~~eAi~~~~~al~----~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~ 140 (297)
....|+.++...|++.+|...+..... ..+..--.........+|...+++..|...++++....... . .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~--~-- 212 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--P--K-- 212 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--S--C--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--C--C--
Confidence 345689999999999999999887542 22221122344556788999999999999999975321000 0 0
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
.... ....+...|.++...++|.+|-.+|..++..
T Consensus 213 ------~~~l-------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 ------YESL-------KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp ------CHHH-------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ------cHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 0000 0135567899999999999999999999864
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.46 E-value=20 Score=31.99 Aligned_cols=126 Identities=18% Similarity=0.177 Sum_probs=72.5
Q ss_pred HHHcCCH---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH----HhhCCcchHHHHHHHHHHHHHH
Q 022442 39 QLVQKDP---EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLIDLYKK 111 (297)
Q Consensus 39 ~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a----l~~~P~~~~~~l~~~L~~ly~~ 111 (297)
.+.+|++ =+|-+.|+. ++.=|.++++|++|++++-.. ++..-...-.++...+.++|.+
T Consensus 22 ~I~~G~y~~~YEAHQ~~RT--------------i~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~ 87 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRL--------------VAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQ 87 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCccccHHHHHHHH--------------HHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 3567888 666666653 455578899999999976542 2222212233555666688877
Q ss_pred cCC--HHHHHHHHHHHHHhhchhhhh----cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442 112 CGK--VEEQIEMLKRKLRLIYQGEAF----NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ 183 (297)
Q Consensus 112 ~g~--~~eAi~~~~~al~~~p~~~~~----~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~ 183 (297)
.+- -++...-+-+.+...|+.... .....+.-..++ .-.-.++..+..+|..|.+.+++.+|+.+|-
T Consensus 88 ~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-----~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 88 AGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-----DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-----SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 652 234444444444444432110 000000000000 1122578899999999999999999999983
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.11 E-value=15 Score=38.18 Aligned_cols=120 Identities=13% Similarity=-0.016 Sum_probs=78.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh-hCCc--------------------chH
Q 022442 40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSK--------------------QSQ 98 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~-~~P~--------------------~~~ 98 (297)
+..+.++-+.. .+..-|.++..-+.+|.++...|++++|...|+++.. +.+. ...
T Consensus 823 ~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 898 (1139)
T 4fhn_B 823 FLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL 898 (1139)
T ss_dssp HHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSS
T ss_pred HHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccH
Confidence 34455554443 2344566666778999999999999999999987632 1110 001
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHH
Q 022442 99 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 178 (297)
Q Consensus 99 ~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA 178 (297)
...+..+..++.+.|.++.+++.-+.||+..+++. ... ....|.++=..+..+|+|++|
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~--------------~~~-------~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDD--------------EDL-------SIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC--------------HHH-------HHHHHHHHHHHHHHHCCSGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC--------------hhh-------HHHHHHHHHHHHHhhCCHHHH
Confidence 12334456788889999999999999887643110 000 112567777788999999999
Q ss_pred HHHHHH
Q 022442 179 EVVYQK 184 (297)
Q Consensus 179 ~~~y~~ 184 (297)
..++-.
T Consensus 958 y~aL~~ 963 (1139)
T 4fhn_B 958 HVALMV 963 (1139)
T ss_dssp GHHHHH
T ss_pred HHHHHh
Confidence 877644
No 259
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=83.28 E-value=19 Score=30.34 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHH-----hCCCcHH----HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442 176 MAAEVVYQKAQM-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 176 ~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~~-~g~~~eA~~~~~~al~~ 221 (297)
+.|..+|++|++ +.|.+|. ..|.+.+|.. +|+.++|..+-++++..
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578889999985 5788884 4577776665 79999999988887764
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.14 E-value=23 Score=34.33 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
...++++ ..|+++.|..++++.-.-.++... .+-+|.++..+|+.++|..+|+++...
T Consensus 290 ~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 290 RRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 4456655 459999999999775443233345 688999999999999999999988763
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.01 E-value=5 Score=36.89 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--ch--HHHHHH
Q 022442 31 PYVRAKHAQLVQKDPEAAIVLFWKAINA---GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDN 103 (297)
Q Consensus 31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~--~~~l~~ 103 (297)
+...++..+...||++.|.+.|.++... .....+.+..+-.++...+++..+...+.++..+... ++ ...+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667788888999999999999998762 3345677888888999999999999999987654221 11 222334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 104 VLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 104 ~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
..|.++...++|.+|...|..++.-
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 4567778899999999999887764
No 262
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=82.18 E-value=19 Score=29.23 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=66.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCc------------chHHHH
Q 022442 38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSK------------QSQESL 101 (297)
Q Consensus 38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~----~~P~------------~~~~~l 101 (297)
+..-.|.+..++-.+. .-+...+.+.-+.+|....++..|+..++..+. .+|+ ...+..
T Consensus 42 ~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF 116 (242)
T 3kae_A 42 VLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF 116 (242)
T ss_dssp HHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred hhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence 3445788877765553 345666778889999999999999999998872 2232 013456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIY 130 (297)
Q Consensus 102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p 130 (297)
.+.+|.++.+.|.-+|||..|.......|
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 67789999999999999999999888754
No 263
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=77.44 E-value=33 Score=29.31 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH----hCCCcHH----HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442 176 MAAEVVYQKAQM----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 176 ~eA~~~y~~Al~----~~P~~~~----~~nLg~~l~~-~g~~~eA~~~~~~al~~ 221 (297)
+.|..+|++|++ +.|.+|. .+|.+.+|.. +|+.++|..+.++++..
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578889999996 5778874 4577776665 79999999988888764
No 264
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=76.94 E-value=23 Score=30.40 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHH-----h--CCCcHH----HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442 175 FMAAEVVYQKAQM-----I--DPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 175 ~~eA~~~y~~Al~-----~--~P~~~~----~~nLg~~l~-~~g~~~eA~~~~~~al~~ 221 (297)
-+.|..+|++|++ + .|.+|. .+|.+.+|. -+++.++|..+.++++..
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3678889999875 4 688884 457777766 579999999999998875
No 265
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=76.00 E-value=37 Score=29.05 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHH-----hCCCcHH----HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442 176 MAAEVVYQKAQM-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 176 ~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~~-~g~~~eA~~~~~~al~~ 221 (297)
+.|..+|++|++ +.|.+|. .+|.+.+|.. +++.++|..+.++++..
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678899999875 5788884 4577777665 79999999988877754
No 266
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=75.39 E-value=35 Score=28.54 Aligned_cols=49 Identities=16% Similarity=0.041 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHHHHH-----hCCCcHH----HhHHHHHHH-HcCCHHHHHHHHHHHHh
Q 022442 172 KTNFMAAEVVYQKAQM-----IDPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLY 220 (297)
Q Consensus 172 ~g~~~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~-~~g~~~eA~~~~~~al~ 220 (297)
.|+-+.|..+|+.|.+ +.|.+|. .+|.+.+|. -+++.++|..+.++++.
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5668899999999997 4677773 467766655 56899999999998865
No 267
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=73.83 E-value=5.6 Score=28.43 Aligned_cols=30 Identities=13% Similarity=0.013 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+..+...+..+...|+|++||.+.++|...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345667889999999999999999998753
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=71.39 E-value=7.6 Score=26.50 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
..+|..+..+|++++|+.+|-+|+..+|.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999999986
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.33 E-value=15 Score=28.70 Aligned_cols=59 Identities=10% Similarity=-0.054 Sum_probs=47.8
Q ss_pred HHHH-HHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 163 GNLA-WAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 163 ~nLg-~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
.+++ .++..+|+-++=.+.++..+.-+|-++. .+.+|.+|.+.|+..+|-+++.+|-+.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3443 3457889999999999987776766777 889999999999999999999998875
No 270
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=70.81 E-value=47 Score=27.95 Aligned_cols=47 Identities=21% Similarity=0.173 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHH-----hCCCcHH----HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442 175 FMAAEVVYQKAQM-----IDPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 175 ~~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~-~~g~~~eA~~~~~~al~~ 221 (297)
-+.|..+|++|.+ +.|.+|. .+|.+.+|. -+++.++|..+.++++..
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3678889999875 5789985 457777665 569999999988877753
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=69.55 E-value=35 Score=26.62 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=25.8
Q ss_pred HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 73 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 73 l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
+..+|+.++=-+.+...+.-.|-. ..+..-++.+|.+.|+..+|-+++++|-+.
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~--~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVS--ASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhccCCCC--hHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344555555555555433322211 123333555566666666666666655543
No 272
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.50 E-value=9.6 Score=26.57 Aligned_cols=28 Identities=21% Similarity=-0.003 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
-+...|.-....|+|++|+.+|+.+++.
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456777788899999999998888764
No 273
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=63.51 E-value=12 Score=26.04 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+...|.-....|+|++|+.+|+.+++.
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445666778888888888888887764
No 274
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=63.08 E-value=80 Score=32.23 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=30.3
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCcH-H---HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 165 LAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K---ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~-~---~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
+|..+...|+.+.+..+.+.... +++.. . .+.+|..|...|+...-..++..+..
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHhhhCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 44445566777666665554443 22222 1 24567777777775444446666665
No 275
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=63.06 E-value=45 Score=26.25 Aligned_cols=62 Identities=5% Similarity=-0.083 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcc--hH----HHHH-HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQ----ESLD-NVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~~----~~l~-~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
+.-|..+...|+|=+|-++++.+....+.. .. .-+. ...|....+.|+...|..++++++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445777788899999999999998876542 11 1112 22245566789999999999999985
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=62.52 E-value=18 Score=24.60 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
..+|..+...|++++|..+|-+|+..-|+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 56899999999999999999999998887655
No 277
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=62.33 E-value=83 Score=27.75 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=40.5
Q ss_pred hCCCcHH-HhHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 022442 188 IDPDANK-ACNLGL-CLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPP 248 (297)
Q Consensus 188 ~~P~~~~-~~nLg~-~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 248 (297)
+.|.+.. .+..|+ .-++.++|.-|....+++|+. .+ ..+..++|..++..++..+.+
T Consensus 201 LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel---~p-~~~~a~qArkil~~ce~~~~D 259 (325)
T 3mv2_A 201 LSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI---IS-SGPRAEQARKIKNKADSMASD 259 (325)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CC-SSHHHHHHHHHHHHHHTSCCC
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHhcCCCC
Confidence 3455544 333333 446889999999999999997 23 356678899999999875544
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.27 E-value=1.4e+02 Score=30.22 Aligned_cols=117 Identities=9% Similarity=0.090 Sum_probs=70.9
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhh
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH 146 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~ 146 (297)
..+...+...|.++-|. .+...+|.++. ..+++|.+|...|++++|..+|++|-.-...+. ......+..
T Consensus 814 ~~l~~~L~~~~~~~~a~----eL~~~~~~t~~--~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~----~~~~~~~~~ 883 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACM----QLIGWLNSDPI--AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT----SQFAVLREF 883 (950)
T ss_dssp HHHHHHHHHTTCHHHHH----HHGGGCCSSHH--HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSC----CSCGGGHHH
T ss_pred HHHHHHHHHhcHHHHHH----HHHhhcCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCc----ccccchhhh
Confidence 34667778888887543 46677886543 346799999999999999999998643211000 000000000
Q ss_pred hhhHH-HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCcH
Q 022442 147 GKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-DPDAN 193 (297)
Q Consensus 147 ~~~~~-~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-~P~~~ 193 (297)
...+. .+.+.-....|.....++.+.+-++-++..-+.|+.. .++++
T Consensus 884 ~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 884 QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred hhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 00000 0111112346677888888899999999999999974 34444
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.65 E-value=48 Score=31.36 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc----H---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA----N---K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC 226 (297)
Q Consensus 159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~----~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~ 226 (297)
+.+++-|=..|...+.|+.|.....++. .|.+ . . .+-+|.++.-+++|.+|...+..++...++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3466778899999999999999999985 4432 2 2 35689999999999999999999998744443
No 280
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.92 E-value=16 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
-+..-|.-....|+|++|+.+|..+++.
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677778899999999999998864
No 281
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.56 E-value=12 Score=26.68 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=10.5
Q ss_pred HHHHHHHHCCChHHHHHHHHH
Q 022442 68 DMAVVMKQLDRSEEAIEAIKS 88 (297)
Q Consensus 68 ~Lg~~l~~~g~~~eAi~~~~~ 88 (297)
..+..+...|+|++||+..++
T Consensus 20 RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHH
Confidence 344455555555555554443
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=58.02 E-value=11 Score=26.13 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=9.9
Q ss_pred HHHCCChHHHHHHHHHHH
Q 022442 73 MKQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 73 l~~~g~~~eAi~~~~~al 90 (297)
.-+.|++++|+..|..++
T Consensus 21 ~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 345566666666555443
No 283
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=57.92 E-value=88 Score=26.64 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH-----hCCCcHH----HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442 176 MAAEVVYQKAQM-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG 221 (297)
Q Consensus 176 ~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~~-~g~~~eA~~~~~~al~~ 221 (297)
+.|..+|+.|++ +.|.+|. .+|.+.+|.. +|+.++|..+.++++..
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 578889999985 5788884 4577776665 79999999988887764
No 284
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.30 E-value=35 Score=24.39 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=24.6
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
..+|..+..+|+++.|+.+|-+++..+|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34888888999999999988888888886
No 285
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=55.96 E-value=19 Score=24.95 Aligned_cols=28 Identities=18% Similarity=0.022 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
.+...|.-....|+|++|+.+|..+++.
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666778889999999999888874
No 286
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=55.84 E-value=20 Score=25.08 Aligned_cols=23 Identities=4% Similarity=0.023 Sum_probs=18.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 022442 106 IDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 106 ~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
+.-....|++++|+.+|.++++.
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 34446779999999999998886
No 287
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=54.77 E-value=20 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
-+...|.-....|+|++|+.+|..+++.
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566777788889999999888888764
No 288
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=54.50 E-value=1.1e+02 Score=26.83 Aligned_cols=128 Identities=14% Similarity=0.081 Sum_probs=70.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH--HhcCCCcHHHHHHHHHHHHHCCC-hHH-HHH
Q 022442 105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTN-FMA-AEV 180 (297)
Q Consensus 105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~l~p~~~~~l~nLg~~y~~~g~-~~e-A~~ 180 (297)
.|.-+...|++++|+..|+.+|...|--..-+ + ....... +.+ ---+-+|.......+ ..+ ..+
T Consensus 108 ~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~----~---~e~~e~~eli~i-----creYilal~iEl~Rr~l~~~~~~ 175 (320)
T 3mkr_B 108 LCYQLTTVGKFEEAVEKFRSILLSVPLLVVDN----K---QEIAEAQQLITI-----CREYIVGLSMETERKKLPKETLE 175 (320)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCS----H---HHHHHHHHHHHH-----HHHHHHHHHHHHHHTTSCCCSHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhheeecc----H---HHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccCCch
Confidence 35666889999999999999998865110000 0 0000000 000 011233433322111 000 001
Q ss_pred HHHHHHH---------hCCCcHH-HhHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 022442 181 VYQKAQM---------IDPDANK-ACNLGL-CLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPP 248 (297)
Q Consensus 181 ~y~~Al~---------~~P~~~~-~~nLg~-~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 248 (297)
--+|.++ +.|.+.. .+..|+ .-++.++|.-|...-+++|+. .+ ..+..++|..++..++....+
T Consensus 176 ~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel---~p-~~~~~~qArkil~~ce~~~~d 250 (320)
T 3mkr_B 176 QQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLEL---GP-KPEVAQQTRKILSACEKNPTD 250 (320)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHT---CC-CHHHHHHHHHHHHHHHHSCCB
T ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHhcCCCC
Confidence 1133333 4555554 333333 446889999999999999997 33 466778899999999875544
No 289
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=50.57 E-value=38 Score=27.61 Aligned_cols=34 Identities=15% Similarity=-0.050 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~ 193 (297)
..++.+|.+++..++|.+|..++..|+..-|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4678899999999999999999999999988654
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.15 E-value=1.9e+02 Score=27.82 Aligned_cols=162 Identities=9% Similarity=0.014 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442 45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 124 (297)
Q Consensus 45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~ 124 (297)
..++..++.++....++....-...+.. ...|++..|...|+.+-...+. ...+.+=+|..+.+.|+.++|..+|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~--~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKE--KDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGG--SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHHHH-HHCCCHHHHHHHHHHccccccc--cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455556655554433333233334444 4569999999988765442222 123445578888999999999999999
Q ss_pred HHHhhchhhhhcCcchhHHhhhhhhHHH---hcCCC-c----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHh
Q 022442 125 KLRLIYQGEAFNGKPTKTARSHGKKFQV---SVRQE-T----SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC 196 (297)
Q Consensus 125 al~~~p~~~~~~~~~~~~~~~~~~~~~~---~l~p~-~----~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~ 196 (297)
+..-. .|.+... ....+..+.+ .+.+. . .......+..+.+.|...+|...+..++.. .+.....
T Consensus 345 ~a~~~----~fYg~lA--a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~ 417 (618)
T 1qsa_A 345 LMQQR----GFYPMVA--AQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-KSKTEQA 417 (618)
T ss_dssp HHTSC----SHHHHHH--HHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHH
T ss_pred HhcCC----ChHHHHH--HHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CCHHHHH
Confidence 87531 1111000 0000000000 00010 0 012345677889999999999999988764 2323366
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 022442 197 NLGLCLIKRTRYNEARSVLE 216 (297)
Q Consensus 197 nLg~~l~~~g~~~eA~~~~~ 216 (297)
.++.+....|.+..++....
T Consensus 418 ~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 418 QLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHH
Confidence 77888888898888876554
No 291
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.29 E-value=22 Score=26.43 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
+...|.-....|+|++|+.+|..|+++
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455666777889999999999888774
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.10 E-value=76 Score=25.97 Aligned_cols=79 Identities=8% Similarity=-0.106 Sum_probs=53.4
Q ss_pred HHHHHHHHc---------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442 50 VLFWKAINA---------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE 120 (297)
Q Consensus 50 ~~~~~al~~---------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~ 120 (297)
.+++++++. ||.....|...+..+ ..+...++.++|.-+....=..-....+-..|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 567777762 344455555555554 2344678999988776543321123455566788899999999999
Q ss_pred HHHHHHHhh
Q 022442 121 MLKRKLRLI 129 (297)
Q Consensus 121 ~~~~al~~~ 129 (297)
+|+.+++..
T Consensus 137 Vy~~GI~~~ 145 (202)
T 3esl_A 137 LLELGAENN 145 (202)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999974
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.76 E-value=2.1e+02 Score=28.94 Aligned_cols=86 Identities=13% Similarity=-0.027 Sum_probs=57.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh-hCCc--------------------ch
Q 022442 39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSK--------------------QS 97 (297)
Q Consensus 39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~-~~P~--------------------~~ 97 (297)
.+..|.++-|. ..+..-|.++..-+.+|.++...|++++|...|+++-. +.+. ..
T Consensus 820 L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~ 895 (950)
T 4gq2_M 820 LFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL 895 (950)
T ss_dssp HHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSH
T ss_pred HHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccch
Confidence 34556665433 34556677777778999999999999999999997642 2111 00
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 98 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 98 ~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
....+...+.++.+.|-++-+++.-+.||..
T Consensus 896 ~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 896 LSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1113344567777778888888877777765
No 294
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=45.75 E-value=83 Score=28.44 Aligned_cols=61 Identities=18% Similarity=0.105 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHC--CChHHHHHHHHHHHHhC-----CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 159 SRLLGNLAWAYMQK--TNFMAAEVVYQKAQMID-----PDANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 159 ~~~l~nLg~~y~~~--g~~~eA~~~y~~Al~~~-----P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
|-++.|||.+=... .....++.+|.+|+... -.+.- +.-+|.++.+.+++.||+..+-.+-
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 33444555443332 11223677777777642 22233 5668999999999999999997654
No 295
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.17 E-value=2.8e+02 Score=28.33 Aligned_cols=187 Identities=16% Similarity=0.083 Sum_probs=92.3
Q ss_pred CCcHHHHHHHH----HHHcCCHHHHHHHHHHHHHcCCC------hH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442 28 GDGPYVRAKHA----QLVQKDPEAAIVLFWKAINAGDR------VD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLC 93 (297)
Q Consensus 28 ~~~~~~~~~~~----~~~~g~~~~A~~~~~~al~~~p~------~~----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~ 93 (297)
++.++.++|-+ .+..|-.++++.++...+..+.. .. .+-..||.++...++ +++++.+...+.-+
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd 484 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND 484 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC
Confidence 45566666543 23445555677777777764320 11 344456666665554 56677776666543
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh----hhh------cCcchhHHhhhhhhHHHhcCCCcHHH--
Q 022442 94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG----EAF------NGKPTKTARSHGKKFQVSVRQETSRL-- 161 (297)
Q Consensus 94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~----~~~------~~~~~~~~~~~~~~~~~~l~p~~~~~-- 161 (297)
...........||.++.-.|+-+-...++.-+.+-.... .+. .+... ...........-+++.+
T Consensus 485 ~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e----~~~~li~~L~~~~dp~vRy 560 (963)
T 4ady_A 485 SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE----LADDLITKMLASDESLLRY 560 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG----GGHHHHHHHHHCSCHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH----HHHHHHHHHHhCCCHHHHH
Confidence 321112344556777777777655555555444321110 000 00000 00001111011123332
Q ss_pred --HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442 162 --LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 162 --l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~ 220 (297)
-..+|.+|...|+...-...+..+.. ++++. . ..-+|..++..|+.+.+..++.....
T Consensus 561 gaa~alglAyaGTGn~~aIq~LL~~~~~-d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 561 GGAFTIALAYAGTGNNSAVKRLLHVAVS-DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 34578888899996444446666654 44443 3 44556666667776544444443333
No 296
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=43.26 E-value=21 Score=25.59 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK 194 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~ 194 (297)
..+|..+...|+++.|+.+|-+|+..-|+-..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 56899999999999999999999998776554
No 297
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.04 E-value=52 Score=30.50 Aligned_cols=96 Identities=10% Similarity=-0.019 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHhhCCcc--------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---hhhhhcCcch
Q 022442 78 RSEEAIEAIKSFRGLCSKQ--------------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY---QGEAFNGKPT 140 (297)
Q Consensus 78 ~~~eAi~~~~~al~~~P~~--------------~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p---~~~~~~~~~~ 140 (297)
..+++...+.++...+-.+ .-..+.+.|-.+|++.|+..-+..+++. ++-.. +-..+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~----- 214 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEY----- 214 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGS-----
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhC-----
Confidence 4566666777766553211 0112345677999999999999888855 33211 11110
Q ss_pred hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCc
Q 022442 141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-DPDA 192 (297)
Q Consensus 141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-~P~~ 192 (297)
.. .+....++.+|.++.-.++|.+|..++..|+.. -|..
T Consensus 215 ------p~-------~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 215 ------QL-------DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp ------CH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ------Cc-------cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 00 012346788999999999999999999999998 6654
No 298
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=42.99 E-value=53 Score=22.64 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHHh
Q 022442 113 GKVEEQIEMLKRKLRL 128 (297)
Q Consensus 113 g~~~eAi~~~~~al~~ 128 (297)
|++++|+.+|.++++.
T Consensus 33 g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 33 GNAEEAITNYKKAIEV 48 (83)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4444444444444443
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.12 E-value=32 Score=23.64 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=23.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCcchhhHHHHHHHHHHH
Q 022442 196 CNLGLCLIKRTRYNEARSVLEDVLYGR---IPGCEDGRTRKRAEELLLEL 242 (297)
Q Consensus 196 ~nLg~~l~~~g~~~eA~~~~~~al~~~---~~~~~~~~~~~~a~~~l~~~ 242 (297)
..+|.=|...|+|+.|+.+|+.+++.- .....++....+|..+..++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei 65 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEI 65 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHH
Confidence 345555555666666666666555420 01122444455566666555
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=40.92 E-value=28 Score=23.96 Aligned_cols=26 Identities=31% Similarity=0.224 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMI 188 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~ 188 (297)
..+|.=|..+|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 46888899999999999999999874
No 301
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.63 E-value=62 Score=26.28 Aligned_cols=30 Identities=10% Similarity=-0.108 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
.+.+|.++..+++|.+|.+.+..++..+|.
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 445566666666666666666655555554
No 302
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=38.78 E-value=1.2e+02 Score=28.07 Aligned_cols=43 Identities=14% Similarity=0.038 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhC-----CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 177 AAEVVYQKAQMID-----PDANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 177 eA~~~y~~Al~~~-----P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.++.+|.+|+... -.+.- +.-+|.++.+.+++.||+..+-.+-
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 3566666666532 22222 5568999999999999999997654
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.58 E-value=1.2e+02 Score=23.82 Aligned_cols=59 Identities=7% Similarity=-0.044 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCc--HH-----HhH-H--HHHHHHcCCHHHHHHHHHHHHhc
Q 022442 163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--NK-----ACN-L--GLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~--~~-----~~n-L--g~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+.-|..++..|+|=+|-++++.+....|.. .. +.. + |......|+..-|..++++++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778888899999999999999887655 32 233 3 33456679999999999999863
No 304
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=35.89 E-value=1.1e+02 Score=21.46 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=41.6
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCcch----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442 68 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQS----QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL 128 (297)
Q Consensus 68 ~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~----~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~ 128 (297)
.-|+.+...|+|=+|-++++......|+.. +.-+...-|....+.|+. |...+++++..
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 356777788999999999999988887521 111112223444578888 99999999885
No 305
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.48 E-value=1e+02 Score=28.56 Aligned_cols=88 Identities=9% Similarity=0.075 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHc--CCCh-----------HHH---HHHHHHHHHHCCChHHHHHHHHHHHh--------hCCcchHH
Q 022442 44 DPEAAIVLFWKAINA--GDRV-----------DSA---LKDMAVVMKQLDRSEEAIEAIKSFRG--------LCSKQSQE 99 (297)
Q Consensus 44 ~~~~A~~~~~~al~~--~p~~-----------~~a---~~~Lg~~l~~~g~~~eAi~~~~~al~--------~~P~~~~~ 99 (297)
..+.+...+.++... ++.. ..+ ...|=.+|.+.|+..-+..+++..-. ..|..-..
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 356677778887773 2111 112 22345789999999999988875432 22322233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hch
Q 022442 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL-IYQ 131 (297)
Q Consensus 100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~-~p~ 131 (297)
...+.+|.++..+++|.+|.+.+..|++. .|.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 45567899999999999999999999998 774
No 306
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=34.71 E-value=87 Score=22.02 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHHHH
Q 022442 228 DGRTRKRAEELLLELE 243 (297)
Q Consensus 228 ~~~~~~~a~~~l~~~~ 243 (297)
....+++|..+-.++.
T Consensus 60 ~G~~we~Ar~LQ~KM~ 75 (89)
T 3eab_A 60 QGEQCERARRLQAKMM 75 (89)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHH
Confidence 4445666766666553
No 307
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=32.70 E-value=1.6e+02 Score=27.07 Aligned_cols=62 Identities=18% Similarity=0.025 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhC----C-CcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442 158 TSRLLGNLAWAYMQKT--NFMAAEVVYQKAQMID----P-DANK-ACNLGLCLIKRTRYNEARSVLEDVL 219 (297)
Q Consensus 158 ~~~~l~nLg~~y~~~g--~~~eA~~~y~~Al~~~----P-~~~~-~~nLg~~l~~~g~~~eA~~~~~~al 219 (297)
.|-++.|||.+-.-.- ....++.+|++|+... - .+.- +.-+|-.+.+.+++.+|+..+-.+-
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 3555666666654322 2234677788777642 2 2223 5668999999999999999997654
No 308
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=31.82 E-value=1.2e+02 Score=21.31 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=41.6
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-----HhHH--HHHHHHcCCHHHHHHHHHHHHh
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-----ACNL--GLCLIKRTRYNEARSVLEDVLY 220 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-----~~nL--g~~l~~~g~~~eA~~~~~~al~ 220 (297)
.-|..++..|+|=+|-++++.+....|+... ...+ |......|+. |...+++++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3567788889999999999999999876432 2334 4444567887 8889988876
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.93 E-value=65 Score=26.78 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=29.0
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT 206 (297)
Q Consensus 164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g 206 (297)
..-.++.+.|.|++|.+.+++...-+|++.. ...|..+-.+..
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 3445678888888888888888887666665 555555544443
No 310
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=28.76 E-value=85 Score=23.14 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=7.7
Q ss_pred HCCChHHHHHHHHHHH
Q 022442 75 QLDRSEEAIEAIKSFR 90 (297)
Q Consensus 75 ~~g~~~eAi~~~~~al 90 (297)
..|++++|+.+|..++
T Consensus 30 ~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 3355555555554443
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.54 E-value=99 Score=24.32 Aligned_cols=75 Identities=9% Similarity=0.082 Sum_probs=47.1
Q ss_pred HHHHHHHHHc---------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 49 IVLFWKAINA---------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 49 ~~~~~~al~~---------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
..+++++++. ||.....|...+... +++.++|.-+....=..-...++...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 4456666653 333344454444432 4467777766544332112345555678889999999999
Q ss_pred HHHHHHHHhh
Q 022442 120 EMLKRKLRLI 129 (297)
Q Consensus 120 ~~~~~al~~~ 129 (297)
++|+.+++..
T Consensus 117 ~Iy~~Gi~~~ 126 (164)
T 2wvi_A 117 AIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999999974
No 312
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=27.20 E-value=3.2e+02 Score=24.03 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCh-HHHHHHHHHHHHh------CC-CcHH-HhHHHHHHHHcCCHHHHHHHH
Q 022442 160 RLLGNLAWAYMQKTNF-MAAEVVYQKAQMI------DP-DANK-ACNLGLCLIKRTRYNEARSVL 215 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~-~eA~~~y~~Al~~------~P-~~~~-~~nLg~~l~~~g~~~eA~~~~ 215 (297)
.....|..++.....- .+=....++|+.- .| .++. +..+|..|++.|++.+|..+|
T Consensus 95 ~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 95 ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3445555555554431 1223344444431 12 4556 667899999999999998887
No 313
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.16 E-value=85 Score=23.26 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442 162 LGNLAWAYMQKTNFMAAEVVYQKAQM 187 (297)
Q Consensus 162 l~nLg~~y~~~g~~~eA~~~y~~Al~ 187 (297)
+.+-|.-..+.|+.++|+.+|++.+.
T Consensus 25 ~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 25 FVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 45566666666777777777666543
No 314
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.64 E-value=76 Score=30.80 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=34.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCh
Q 022442 36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS 79 (297)
Q Consensus 36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~ 79 (297)
...++..|++.-|.++...++..+|++.++...++.+|.++|.-
T Consensus 456 a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 456 ARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 33455788998899999988888999888888888888777643
No 315
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.52 E-value=1.1e+02 Score=20.93 Aligned_cols=15 Identities=27% Similarity=0.058 Sum_probs=7.2
Q ss_pred HCCChHHHHHHHHHH
Q 022442 75 QLDRSEEAIEAIKSF 89 (297)
Q Consensus 75 ~~g~~~eAi~~~~~a 89 (297)
..|++++|+..|..+
T Consensus 25 ~~g~y~eAl~~Y~~a 39 (85)
T 2v6x_A 25 TATQYEEAYTAYYNG 39 (85)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 345555555544443
No 316
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.35 E-value=53 Score=26.90 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=19.0
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442 165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC 201 (297)
Q Consensus 165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~ 201 (297)
.-.++.+.|.+++|++.+++...-+|++.. ...|..+
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 345566677777777777776666655554 4444433
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.26 E-value=84 Score=22.04 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=8.6
Q ss_pred HHCCChHHHHHHHHHHH
Q 022442 74 KQLDRSEEAIEAIKSFR 90 (297)
Q Consensus 74 ~~~g~~~eAi~~~~~al 90 (297)
-..|++++|+..|..++
T Consensus 26 D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 34455555555554433
No 318
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.53 E-value=1.3e+02 Score=23.29 Aligned_cols=46 Identities=9% Similarity=-0.064 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCC--CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 176 MAAEVVYQKAQMIDP--DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 176 ~eA~~~y~~Al~~~P--~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+++..+|.-.....- ..+. +..-|..+...|++.+|..+|+..++.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 346666666665443 3334 456677777777777777777777764
No 319
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=24.21 E-value=1.5e+02 Score=19.05 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442 66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI 119 (297)
Q Consensus 66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi 119 (297)
+..+|.+-...-+++||..+-+ .+...+.. .+.+..+...-+..+|+|++|+
T Consensus 9 LAe~AL~~TG~HcH~EA~tIA~-~L~~~~~~-eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 9 LAELALAGTGHHCHQEAASIAD-WLAQEECM-AECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHH-HHHTSSTT-HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHccchHHHHHHHHHH-HHHhCCCH-HHHHHHHHHHHHHccchHhHhh
Confidence 3345555566678888876544 34444432 3344455556678899999886
No 320
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.76 E-value=1.3e+02 Score=29.01 Aligned_cols=48 Identities=15% Similarity=0.013 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCC
Q 022442 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR 207 (297)
Q Consensus 160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~ 207 (297)
+.....|......|+|.-|.++...++..+|+|.. ..-++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34566788888999999999999999999999998 6677888887774
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.73 E-value=2.9e+02 Score=22.79 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442 79 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI 129 (297)
Q Consensus 79 ~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~ 129 (297)
.+++.++|.-+....=..-...++...+..+...|++.+|..+|+.+++..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 356777777665543321123455556788899999999999999999974
No 322
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=21.91 E-value=4.4e+02 Score=23.68 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=20.2
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHH
Q 022442 195 ACNLGLCLIKRTRYNEARSVLED 217 (297)
Q Consensus 195 ~~nLg~~l~~~g~~~eA~~~~~~ 217 (297)
....|.++..+|+++.|..+++.
T Consensus 339 ~~eYA~lLA~qG~l~~A~~yL~~ 361 (399)
T 2pm7_A 339 FLEFINLTTSTGNFELATEFLNS 361 (399)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHh
Confidence 45679999999999999999985
No 323
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.82 E-value=2e+02 Score=22.43 Aligned_cols=48 Identities=4% Similarity=0.049 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442 48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK 95 (297)
Q Consensus 48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~ 95 (297)
|...+.++...+|........+..++....+....+..|..-+..+|.
T Consensus 75 a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 75 AVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 444444444556666666666666666666666666555555666664
No 324
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.04 E-value=62 Score=29.78 Aligned_cols=54 Identities=17% Similarity=-0.023 Sum_probs=39.2
Q ss_pred HHcCCHHHHHHHHHHHH------HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442 40 LVQKDPEAAIVLFWKAI------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC 93 (297)
Q Consensus 40 ~~~g~~~~A~~~~~~al------~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~ 93 (297)
....|+++|+..+.... ...++...|+..+|.+|.-+|++++|++..+.++...
T Consensus 162 ~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~ 221 (460)
T 3snx_A 162 QIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKGY 221 (460)
T ss_dssp HHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34568888887763111 1234566788889999999999999999999888653
No 325
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=20.45 E-value=32 Score=25.30 Aligned_cols=22 Identities=45% Similarity=0.803 Sum_probs=19.1
Q ss_pred CcccCCCcchhhhhhcchhhhc
Q 022442 275 APSRSKRLPIFEEISSFRDRIA 296 (297)
Q Consensus 275 ~~yr~~~~~~~~~~~~~~~~~~ 296 (297)
+.-|..|.|..+||..||++|.
T Consensus 44 PK~RETRaP~V~EL~~~~d~l~ 65 (122)
T 1yua_A 44 PKSRETRAPLVEELYRFRDRLP 65 (122)
T ss_dssp TSCCCCCSCBHHHHHHTTTTCC
T ss_pred CccccccchHHHHHHHHHHhcC
Confidence 3578899999999999999884
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.43 E-value=1.7e+02 Score=22.86 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCC--CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442 178 AEVVYQKAQMIDP--DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG 221 (297)
Q Consensus 178 A~~~y~~Al~~~P--~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~ 221 (297)
+..+|.-.....- ..+. +..-|..+...|++.+|..+|+..+..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4445555544333 3333 445566666666666666666666654
No 327
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.33 E-value=1.9e+02 Score=24.12 Aligned_cols=42 Identities=12% Similarity=-0.062 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH--HhHHHHHH
Q 022442 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCL 202 (297)
Q Consensus 161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~--~~nLg~~l 202 (297)
-+..++.+..+.+||++...+.+++.+.++.-.. ..-|..+|
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaY 53 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAY 53 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 4567888999999999999999999999886553 44455555
Done!