Query 022443
Match_columns 297
No_of_seqs 320 out of 1597
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3029 Glutathione S-transfer 100.0 4.3E-36 9.4E-41 255.1 19.9 202 85-286 88-332 (370)
2 PRK09481 sspA stringent starva 99.9 4.2E-25 9.1E-30 189.7 16.4 158 86-285 9-169 (211)
3 KOG0406 Glutathione S-transfer 99.9 1.1E-24 2.4E-29 184.8 17.1 163 85-288 7-175 (231)
4 PRK10387 glutaredoxin 2; Provi 99.9 1.8E-23 3.9E-28 179.1 17.4 175 88-286 1-184 (210)
5 PLN02473 glutathione S-transfe 99.9 3.7E-23 8E-28 177.8 14.9 168 87-285 2-177 (214)
6 PRK15113 glutathione S-transfe 99.9 6E-23 1.3E-27 176.7 16.0 164 86-285 4-179 (214)
7 COG0625 Gst Glutathione S-tran 99.9 1.8E-22 3.8E-27 173.3 15.1 163 88-284 1-172 (211)
8 PRK13972 GSH-dependent disulfi 99.9 8.5E-23 1.8E-27 175.8 12.6 162 87-285 1-174 (215)
9 TIGR02182 GRXB Glutaredoxin, G 99.9 1E-21 2.2E-26 168.5 17.2 179 89-284 1-181 (209)
10 KOG0868 Glutathione S-transfer 99.9 1.7E-22 3.8E-27 161.8 10.4 163 86-284 4-175 (217)
11 PLN02395 glutathione S-transfe 99.9 1.7E-21 3.8E-26 167.5 16.1 166 87-284 2-175 (215)
12 PRK11752 putative S-transferas 99.9 1.7E-21 3.6E-26 172.8 15.3 164 84-284 41-219 (264)
13 PRK10542 glutathionine S-trans 99.9 2.7E-21 5.8E-26 164.5 14.4 156 88-284 1-165 (201)
14 PRK10357 putative glutathione 99.9 3E-21 6.4E-26 164.5 13.2 161 88-284 1-165 (202)
15 TIGR01262 maiA maleylacetoacet 99.9 9.3E-21 2E-25 162.3 14.3 163 89-284 1-172 (210)
16 PLN02378 glutathione S-transfe 99.9 1.4E-20 3E-25 161.9 15.1 142 92-284 16-161 (213)
17 TIGR00862 O-ClC intracellular 99.8 9.4E-20 2E-24 158.1 15.8 70 93-162 16-87 (236)
18 KOG4244 Failed axon connection 99.8 1.1E-19 2.3E-24 154.8 15.7 193 82-286 40-246 (281)
19 PLN02817 glutathione dehydroge 99.8 6.5E-20 1.4E-24 162.3 14.4 142 93-285 70-214 (265)
20 PTZ00057 glutathione s-transfe 99.8 4.4E-19 9.4E-24 151.7 16.8 155 86-285 3-167 (205)
21 KOG0867 Glutathione S-transfer 99.8 3.3E-19 7.1E-24 154.5 12.1 164 87-285 2-175 (226)
22 cd03197 GST_C_mPGES2 GST_C fam 99.8 1.8E-18 3.9E-23 138.0 11.7 117 169-285 4-122 (149)
23 PF13417 GST_N_3: Glutathione 99.7 2.6E-17 5.5E-22 117.9 7.8 72 90-161 1-74 (75)
24 cd03055 GST_N_Omega GST_N fami 99.7 5.8E-17 1.3E-21 120.0 9.3 85 71-155 2-89 (89)
25 cd03040 GST_N_mPGES2 GST_N fam 99.7 7.1E-17 1.5E-21 116.1 9.1 73 87-159 1-77 (77)
26 cd03041 GST_N_2GST_N GST_N fam 99.7 7.1E-17 1.5E-21 116.2 9.1 72 87-158 1-77 (77)
27 KOG1695 Glutathione S-transfer 99.7 3.8E-16 8.3E-21 131.8 14.0 162 87-287 3-169 (206)
28 cd03037 GST_N_GRX2 GST_N famil 99.7 3.7E-16 8E-21 110.6 8.1 69 88-156 1-71 (71)
29 cd03059 GST_N_SspA GST_N famil 99.7 4.3E-16 9.3E-21 110.7 8.5 71 88-158 1-73 (73)
30 cd03061 GST_N_CLIC GST_N famil 99.7 5.4E-16 1.2E-20 114.2 8.3 69 94-162 20-90 (91)
31 cd03058 GST_N_Tau GST_N family 99.6 1.1E-15 2.3E-20 109.1 8.4 71 88-158 1-74 (74)
32 cd03052 GST_N_GDAP1 GST_N fami 99.6 8.6E-16 1.9E-20 109.4 7.5 68 88-155 1-73 (73)
33 COG2999 GrxB Glutaredoxin 2 [P 99.6 4E-15 8.7E-20 119.5 11.8 104 88-193 1-106 (215)
34 KOG4420 Uncharacterized conser 99.6 4.8E-15 1E-19 125.7 12.3 75 87-161 26-105 (325)
35 cd03045 GST_N_Delta_Epsilon GS 99.6 1.6E-15 3.5E-20 108.0 7.8 69 88-156 1-74 (74)
36 cd03080 GST_N_Metaxin_like GST 99.6 2.9E-15 6.3E-20 107.2 8.5 68 87-159 1-75 (75)
37 cd03060 GST_N_Omega_like GST_N 99.6 2.5E-15 5.4E-20 106.4 7.9 66 89-154 2-70 (71)
38 cd03050 GST_N_Theta GST_N fami 99.6 6.2E-15 1.4E-19 105.7 8.2 71 88-158 1-76 (76)
39 cd03048 GST_N_Ure2p_like GST_N 99.6 1.2E-14 2.6E-19 105.5 9.5 72 87-159 1-80 (81)
40 cd03053 GST_N_Phi GST_N family 99.6 8.5E-15 1.8E-19 104.9 8.4 70 88-157 2-76 (76)
41 cd03076 GST_N_Pi GST_N family, 99.6 6.7E-15 1.5E-19 104.7 7.5 71 87-157 1-73 (73)
42 KOG1422 Intracellular Cl- chan 99.6 4.5E-14 9.7E-19 116.7 13.1 142 94-283 19-166 (221)
43 cd03056 GST_N_4 GST_N family, 99.6 9.3E-15 2E-19 103.6 7.9 68 88-155 1-73 (73)
44 cd03051 GST_N_GTT2_like GST_N 99.6 8.4E-15 1.8E-19 104.0 6.7 68 88-155 1-74 (74)
45 cd03039 GST_N_Sigma_like GST_N 99.6 1.2E-14 2.5E-19 103.1 7.1 69 88-156 1-72 (72)
46 cd03038 GST_N_etherase_LigE GS 99.5 2.3E-14 5.1E-19 104.8 7.3 66 94-159 14-84 (84)
47 cd03049 GST_N_3 GST_N family, 99.5 2.1E-14 4.5E-19 102.1 6.8 68 88-155 1-73 (73)
48 cd03047 GST_N_2 GST_N family, 99.5 3.8E-14 8.3E-19 100.8 7.7 68 88-155 1-73 (73)
49 cd03057 GST_N_Beta GST_N famil 99.5 7.3E-14 1.6E-18 100.3 8.3 71 88-159 1-77 (77)
50 cd03042 GST_N_Zeta GST_N famil 99.5 6.8E-14 1.5E-18 99.2 7.8 68 88-155 1-73 (73)
51 cd03044 GST_N_EF1Bgamma GST_N 99.5 7.9E-14 1.7E-18 99.7 8.0 68 89-156 2-74 (75)
52 cd03046 GST_N_GTT1_like GST_N 99.5 1.1E-13 2.4E-18 99.0 8.7 71 88-159 1-76 (76)
53 cd03054 GST_N_Metaxin GST_N fa 99.5 9.3E-14 2E-18 98.5 7.9 65 88-157 1-72 (72)
54 PLN02907 glutamate-tRNA ligase 99.5 3E-13 6.6E-18 134.0 14.0 127 88-284 3-131 (722)
55 cd03077 GST_N_Alpha GST_N fami 99.5 2.2E-13 4.8E-18 98.4 9.1 72 88-159 2-77 (79)
56 PF13409 GST_N_2: Glutathione 99.5 8.7E-14 1.9E-18 98.2 6.4 63 95-157 1-70 (70)
57 cd00570 GST_N_family Glutathio 99.5 1.6E-13 3.4E-18 95.6 7.4 68 88-155 1-71 (71)
58 cd03075 GST_N_Mu GST_N family, 99.5 2.5E-13 5.4E-18 98.9 8.7 70 89-158 2-82 (82)
59 TIGR02190 GlrX-dom Glutaredoxi 99.5 4.4E-13 9.5E-18 96.9 9.5 73 83-155 5-79 (79)
60 KOG3027 Mitochondrial outer me 99.4 9.6E-12 2.1E-16 102.4 15.2 185 97-292 35-226 (257)
61 PF02798 GST_N: Glutathione S- 99.4 2.9E-12 6.2E-17 91.9 9.2 68 89-156 2-76 (76)
62 cd03043 GST_N_1 GST_N family, 99.3 5.3E-12 1.1E-16 89.7 8.2 64 92-155 6-73 (73)
63 cd03029 GRX_hybridPRX5 Glutare 99.3 7.3E-12 1.6E-16 88.7 8.9 69 87-155 2-72 (72)
64 PRK10638 glutaredoxin 3; Provi 99.3 3.7E-11 8.1E-16 87.6 9.2 69 87-155 3-74 (83)
65 KOG3028 Translocase of outer m 99.2 3.1E-10 6.7E-15 99.6 15.6 189 95-294 16-214 (313)
66 cd03079 GST_N_Metaxin2 GST_N f 99.2 4.9E-11 1.1E-15 84.4 7.2 60 94-157 15-74 (74)
67 TIGR02189 GlrX-like_plant Glut 99.2 1.2E-10 2.6E-15 87.7 9.1 73 82-154 4-82 (99)
68 cd03027 GRX_DEP Glutaredoxin ( 99.2 2E-10 4.4E-15 81.5 8.9 67 86-152 1-70 (73)
69 COG0695 GrxC Glutaredoxin and 99.2 2.4E-10 5.3E-15 82.6 8.7 70 87-156 2-76 (80)
70 COG0435 ECM4 Predicted glutath 99.1 1.5E-10 3.2E-15 99.7 8.5 160 84-284 48-246 (324)
71 TIGR02183 GRXA Glutaredoxin, G 99.1 3.5E-10 7.6E-15 83.0 9.2 72 88-159 2-83 (86)
72 TIGR00365 monothiol glutaredox 99.1 3.7E-10 7.9E-15 84.8 8.3 73 83-155 9-89 (97)
73 PRK11200 grxA glutaredoxin 1; 99.1 7.3E-10 1.6E-14 81.0 9.6 73 87-159 2-84 (85)
74 KOG2903 Predicted glutathione 99.1 1.2E-10 2.5E-15 99.4 5.9 161 83-284 33-246 (319)
75 PHA03050 glutaredoxin; Provisi 99.1 4.3E-10 9.3E-15 86.0 8.5 71 83-153 10-89 (108)
76 cd03418 GRX_GRXb_1_3_like Glut 99.1 9.6E-10 2.1E-14 78.2 8.9 69 87-155 1-73 (75)
77 cd03078 GST_N_Metaxin1_like GS 99.1 8.3E-10 1.8E-14 78.3 7.8 58 95-157 15-72 (73)
78 cd02066 GRX_family Glutaredoxi 99.0 1.7E-09 3.7E-14 75.6 8.7 67 87-153 1-70 (72)
79 cd03028 GRX_PICOT_like Glutare 99.0 2.2E-09 4.7E-14 79.5 9.1 73 83-155 5-85 (90)
80 PRK10329 glutaredoxin-like pro 99.0 2.2E-09 4.7E-14 77.8 8.1 60 87-146 2-63 (81)
81 TIGR02181 GRX_bact Glutaredoxi 99.0 3E-09 6.5E-14 76.6 8.2 69 88-156 1-72 (79)
82 PRK10824 glutaredoxin-4; Provi 99.0 3.2E-09 7E-14 81.6 8.5 74 82-155 11-92 (115)
83 KOG1752 Glutaredoxin and relat 98.9 4.6E-09 9.9E-14 79.2 8.5 73 82-154 10-88 (104)
84 PF00462 Glutaredoxin: Glutare 98.9 4.1E-09 8.9E-14 71.7 6.4 57 88-144 1-60 (60)
85 TIGR02196 GlrX_YruB Glutaredox 98.9 9.2E-09 2E-13 72.2 8.2 68 87-154 1-73 (74)
86 cd03419 GRX_GRXh_1_2_like Glut 98.9 9.8E-09 2.1E-13 74.2 8.5 70 87-156 1-76 (82)
87 TIGR02194 GlrX_NrdH Glutaredox 98.9 9.3E-09 2E-13 72.7 7.0 55 88-142 1-57 (72)
88 TIGR02180 GRX_euk Glutaredoxin 98.8 2.8E-08 6.2E-13 72.0 8.1 69 88-156 1-77 (84)
89 cd02976 NrdH NrdH-redoxin (Nrd 98.7 4.9E-08 1.1E-12 68.4 7.8 62 87-148 1-65 (73)
90 TIGR02200 GlrX_actino Glutared 98.7 1.3E-07 2.9E-12 67.2 8.4 69 87-155 1-76 (77)
91 PTZ00062 glutaredoxin; Provisi 98.5 3.7E-07 8E-12 77.5 8.8 74 81-154 108-189 (204)
92 cd03031 GRX_GRX_like Glutaredo 98.5 8.8E-07 1.9E-11 71.3 9.0 68 87-154 1-81 (147)
93 cd03196 GST_C_5 GST_C family, 98.4 5.8E-07 1.3E-11 69.5 6.1 81 166-285 3-83 (115)
94 PRK12759 bifunctional gluaredo 98.4 1.2E-06 2.6E-11 82.5 8.7 66 87-152 3-79 (410)
95 cd03188 GST_C_Beta GST_C famil 98.4 7.9E-07 1.7E-11 68.0 6.1 42 243-284 43-84 (114)
96 cd03186 GST_C_SspA GST_N famil 98.4 1.2E-06 2.6E-11 66.5 6.9 42 243-284 35-76 (107)
97 PF13410 GST_C_2: Glutathione 98.4 8.7E-07 1.9E-11 61.7 5.3 46 242-287 5-50 (69)
98 cd03190 GST_C_ECM4_like GST_C 98.3 2.9E-06 6.3E-11 68.1 8.2 42 243-284 37-78 (142)
99 cd03189 GST_C_GTT1_like GST_C 98.3 1.7E-06 3.6E-11 66.9 6.4 43 243-285 54-96 (119)
100 cd03180 GST_C_2 GST_C family, 98.3 1.3E-06 2.9E-11 66.2 5.2 43 243-285 43-85 (110)
101 cd03185 GST_C_Tau GST_C family 98.3 3.6E-06 7.8E-11 65.7 7.5 41 244-284 36-76 (126)
102 cd03177 GST_C_Delta_Epsilon GS 98.2 6.5E-06 1.4E-10 63.7 8.2 44 242-285 37-80 (118)
103 cd03187 GST_C_Phi GST_C family 98.2 4.9E-06 1.1E-10 64.0 6.0 43 243-285 45-87 (118)
104 cd03182 GST_C_GTT2_like GST_C 98.1 3.7E-06 8E-11 64.7 5.3 42 243-284 49-90 (117)
105 cd03179 GST_C_1 GST_C family, 98.1 2.1E-06 4.6E-11 64.6 3.6 41 244-284 44-84 (105)
106 cd03191 GST_C_Zeta GST_C famil 98.1 1E-05 2.2E-10 62.8 6.9 39 246-284 47-87 (121)
107 cd03178 GST_C_Ure2p_like GST_C 98.1 4.6E-06 1E-10 63.7 4.9 43 243-285 40-82 (113)
108 cd03181 GST_C_EFB1gamma GST_C 98.1 6.2E-06 1.3E-10 64.0 5.5 43 243-285 40-82 (123)
109 cd02973 TRX_GRX_like Thioredox 98.1 2E-05 4.2E-10 54.5 6.9 58 87-146 2-65 (67)
110 cd03211 GST_C_Metaxin2 GST_C f 98.0 9.6E-06 2.1E-10 63.8 5.6 46 242-287 56-101 (126)
111 PF00043 GST_C: Glutathione S- 98.0 1E-05 2.3E-10 59.7 5.2 46 242-287 27-72 (95)
112 cd03202 GST_C_etherase_LigE GS 98.0 4.3E-05 9.4E-10 59.8 8.6 44 242-285 57-100 (124)
113 cd03193 GST_C_Metaxin GST_C fa 98.0 1.7E-05 3.7E-10 58.0 5.9 43 244-286 20-62 (88)
114 cd00299 GST_C_family Glutathio 98.0 7.5E-06 1.6E-10 60.5 3.8 45 243-287 36-80 (100)
115 cd03200 GST_C_JTV1 GST_C famil 98.0 3.7E-05 8E-10 57.4 7.2 34 250-283 42-75 (96)
116 PF14497 GST_C_3: Glutathione 97.9 1.2E-05 2.6E-10 60.2 3.9 45 243-287 35-81 (99)
117 COG0278 Glutaredoxin-related p 97.9 5.4E-05 1.2E-09 55.7 6.9 74 82-155 11-93 (105)
118 cd03184 GST_C_Omega GST_C fami 97.9 4.7E-05 1E-09 59.4 7.2 45 241-285 30-76 (124)
119 PF10568 Tom37: Outer mitochon 97.9 5.5E-05 1.2E-09 53.3 6.7 56 95-155 13-72 (72)
120 cd03183 GST_C_Theta GST_C fami 97.8 0.00012 2.6E-09 57.1 8.2 42 243-284 45-87 (126)
121 cd03198 GST_C_CLIC GST_C famil 97.7 0.00011 2.4E-09 58.2 6.7 43 242-284 28-86 (134)
122 cd03030 GRX_SH3BGR Glutaredoxi 97.7 0.00038 8.2E-09 51.5 8.8 66 88-153 2-80 (92)
123 cd03201 GST_C_DHAR GST_C famil 97.6 0.00019 4.1E-09 55.9 6.9 43 243-285 30-73 (121)
124 cd03192 GST_C_Sigma_like GST_C 97.6 0.00014 3E-09 54.7 5.9 42 244-285 40-83 (104)
125 cd03207 GST_C_8 GST_C family, 97.6 0.0001 2.3E-09 55.3 5.2 44 243-286 30-73 (103)
126 cd03206 GST_C_7 GST_C family, 97.6 0.00011 2.4E-09 54.9 5.2 40 243-282 33-72 (100)
127 cd03212 GST_C_Metaxin1_3 GST_C 97.6 0.00012 2.6E-09 58.4 5.4 44 243-286 64-107 (137)
128 cd03036 ArsC_like Arsenate Red 97.5 0.00015 3.2E-09 55.7 4.4 32 88-119 1-32 (111)
129 TIGR00412 redox_disulf_2 small 97.5 0.00076 1.7E-08 47.9 7.8 56 87-145 2-61 (76)
130 cd03204 GST_C_GDAP1 GST_C fami 97.5 0.00021 4.5E-09 54.8 4.9 44 242-285 28-81 (111)
131 cd03195 GST_C_4 GST_C family, 97.5 0.00061 1.3E-08 52.4 7.5 41 243-284 42-83 (114)
132 cd03209 GST_C_Mu GST_C family, 97.4 0.00035 7.5E-09 54.2 5.7 42 244-285 36-77 (121)
133 cd03203 GST_C_Lambda GST_C fam 97.4 0.00053 1.1E-08 53.2 6.2 36 248-284 35-73 (120)
134 cd03194 GST_C_3 GST_C family, 97.3 0.00062 1.4E-08 52.4 5.6 39 245-284 46-84 (114)
135 cd03032 ArsC_Spx Arsenate Redu 97.2 0.0006 1.3E-08 52.6 5.2 33 87-119 1-33 (115)
136 PRK01655 spxA transcriptional 97.2 0.0004 8.7E-09 54.9 4.3 33 87-119 1-33 (131)
137 cd02977 ArsC_family Arsenate R 97.2 0.00037 8E-09 52.8 3.9 32 88-119 1-32 (105)
138 cd03210 GST_C_Pi GST_C family, 97.2 0.00077 1.7E-08 52.7 5.2 40 245-284 37-79 (126)
139 TIGR00411 redox_disulf_1 small 97.1 0.0037 8.1E-08 44.5 8.2 56 87-142 2-62 (82)
140 PF05768 DUF836: Glutaredoxin- 97.1 0.003 6.6E-08 45.4 7.4 55 87-141 1-57 (81)
141 cd03208 GST_C_Alpha GST_C fami 97.1 0.00078 1.7E-08 53.6 4.7 39 247-285 43-83 (137)
142 PRK12559 transcriptional regul 97.1 0.0011 2.4E-08 52.4 5.4 40 87-126 1-42 (131)
143 PRK13344 spxA transcriptional 97.1 0.0012 2.6E-08 52.2 5.4 40 87-126 1-42 (132)
144 PF14834 GST_C_4: Glutathione 96.9 0.0027 5.9E-08 48.3 5.9 42 244-286 44-86 (117)
145 cd03035 ArsC_Yffb Arsenate Red 96.9 0.0021 4.6E-08 48.8 5.0 39 88-126 1-41 (105)
146 TIGR01617 arsC_related transcr 96.9 0.0013 2.9E-08 50.8 4.0 32 88-119 1-32 (117)
147 COG4545 Glutaredoxin-related p 96.8 0.0044 9.5E-08 43.2 5.9 59 88-146 4-78 (85)
148 cd03033 ArsC_15kD Arsenate Red 96.8 0.0026 5.7E-08 48.9 5.3 41 87-127 1-43 (113)
149 PF13192 Thioredoxin_3: Thiore 96.8 0.014 3E-07 41.4 8.7 58 87-147 2-63 (76)
150 cd03026 AhpF_NTD_C TRX-GRX-lik 96.7 0.0066 1.4E-07 44.6 6.7 59 86-145 14-77 (89)
151 PHA02125 thioredoxin-like prot 96.6 0.0057 1.2E-07 43.2 5.6 53 87-142 1-54 (75)
152 KOG0911 Glutaredoxin-related p 96.6 0.0074 1.6E-07 51.3 7.0 73 83-155 136-216 (227)
153 COG1393 ArsC Arsenate reductas 96.2 0.012 2.7E-07 45.4 5.6 40 87-126 2-43 (117)
154 cd03205 GST_C_6 GST_C family, 96.1 0.011 2.4E-07 43.8 4.8 41 242-285 36-76 (98)
155 TIGR01616 nitro_assoc nitrogen 96.1 0.016 3.4E-07 45.5 5.7 41 87-127 2-44 (126)
156 PRK10853 putative reductase; P 96.0 0.013 2.7E-07 45.5 4.9 41 87-127 1-43 (118)
157 PRK10026 arsenate reductase; P 95.9 0.019 4E-07 45.9 5.5 41 86-126 2-44 (141)
158 cd01659 TRX_superfamily Thiore 95.7 0.033 7.1E-07 36.1 5.3 52 88-139 1-59 (69)
159 cd03034 ArsC_ArsC Arsenate Red 95.4 0.033 7.1E-07 42.7 5.0 39 88-126 1-41 (112)
160 TIGR00014 arsC arsenate reduct 95.4 0.033 7.2E-07 42.8 5.0 39 88-126 1-41 (114)
161 PF11287 DUF3088: Protein of u 94.4 0.2 4.3E-06 38.0 6.7 67 95-161 23-110 (112)
162 PF04908 SH3BGR: SH3-binding, 94.2 0.41 8.9E-06 35.8 8.0 69 87-155 2-88 (99)
163 TIGR01295 PedC_BrcD bacterioci 93.3 0.6 1.3E-05 36.2 8.0 58 87-144 26-103 (122)
164 PF04399 Glutaredoxin2_C: Glut 93.1 0.41 8.9E-06 37.8 6.7 41 243-284 59-99 (132)
165 cd02975 PfPDO_like_N Pyrococcu 92.8 0.24 5.3E-06 37.8 5.1 52 86-139 23-81 (113)
166 cd03199 GST_C_GRX2 GST_C famil 92.6 1.3 2.9E-05 34.6 8.8 41 244-285 61-101 (128)
167 cd02947 TRX_family TRX family; 92.4 0.93 2E-05 31.8 7.6 57 86-143 12-75 (93)
168 cd02949 TRX_NTR TRX domain, no 91.7 0.99 2.2E-05 33.1 7.1 58 87-144 16-80 (97)
169 PF00085 Thioredoxin: Thioredo 91.7 1.4 3.1E-05 32.0 8.0 71 86-156 19-102 (103)
170 PF11801 Tom37_C: Tom37 C-term 91.4 0.27 5.9E-06 40.5 4.0 44 249-292 114-161 (168)
171 KOG2824 Glutaredoxin-related p 91.1 0.53 1.2E-05 41.4 5.7 69 85-153 130-211 (281)
172 TIGR03143 AhpF_homolog putativ 91.1 0.79 1.7E-05 45.1 7.7 60 85-146 477-542 (555)
173 TIGR02187 GlrX_arch Glutaredox 90.3 1.2 2.6E-05 38.1 7.2 56 85-140 134-193 (215)
174 TIGR03140 AhpF alkyl hydropero 89.7 0.54 1.2E-05 45.8 5.1 71 85-157 118-198 (515)
175 PF03960 ArsC: ArsC family; I 89.6 0.44 9.4E-06 36.2 3.5 29 91-119 1-29 (110)
176 PRK15317 alkyl hydroperoxide r 89.4 0.57 1.2E-05 45.7 5.0 72 85-158 117-198 (517)
177 cd02989 Phd_like_TxnDC9 Phosdu 89.1 2.1 4.7E-05 32.5 7.1 59 86-146 24-90 (113)
178 cd02984 TRX_PICOT TRX domain, 88.5 2.6 5.6E-05 30.5 7.0 59 86-144 16-81 (97)
179 PTZ00443 Thioredoxin domain-co 88.4 8.5 0.00018 33.2 11.0 74 87-160 55-141 (224)
180 cd02948 TRX_NDPK TRX domain, T 87.7 4.2 9E-05 30.1 7.8 58 87-144 20-84 (102)
181 cd02963 TRX_DnaJ TRX domain, D 87.6 4.2 9.1E-05 30.7 7.8 59 86-144 26-92 (111)
182 PTZ00051 thioredoxin; Provisio 87.6 3.4 7.3E-05 30.0 7.1 57 86-144 20-84 (98)
183 PRK10996 thioredoxin 2; Provis 87.1 6.5 0.00014 31.0 9.0 59 86-144 54-119 (139)
184 TIGR02187 GlrX_arch Glutaredox 86.5 2.8 6.2E-05 35.7 7.0 74 85-158 20-111 (215)
185 cd02954 DIM1 Dim1 family; Dim1 86.3 2.3 5.1E-05 32.6 5.7 59 87-145 17-82 (114)
186 PRK09381 trxA thioredoxin; Pro 85.6 7.5 0.00016 28.8 8.3 58 87-144 24-88 (109)
187 PF09635 MetRS-N: MetRS-N bind 85.5 1.1 2.4E-05 34.6 3.5 29 132-160 34-64 (122)
188 PHA03075 glutaredoxin-like pro 85.4 1 2.2E-05 34.3 3.2 70 84-158 1-70 (123)
189 cd02955 SSP411 TRX domain, SSP 85.2 3.1 6.7E-05 32.4 6.0 61 87-147 18-97 (124)
190 cd02959 ERp19 Endoplasmic reti 85.1 3 6.4E-05 32.0 5.9 60 87-146 22-92 (117)
191 PHA02278 thioredoxin-like prot 85.1 5.8 0.00013 29.7 7.3 58 87-144 17-85 (103)
192 TIGR01068 thioredoxin thioredo 84.2 10 0.00022 27.2 8.3 56 87-142 17-79 (101)
193 cd02994 PDI_a_TMX PDIa family, 84.1 7.3 0.00016 28.4 7.5 56 87-142 19-82 (101)
194 cd02953 DsbDgamma DsbD gamma f 82.8 4.5 9.8E-05 29.8 5.9 54 86-139 13-78 (104)
195 KOG0190 Protein disulfide isom 82.6 4.8 0.0001 38.8 7.2 75 88-162 46-136 (493)
196 cd02956 ybbN ybbN protein fami 82.5 7.7 0.00017 27.9 7.0 57 87-143 15-78 (96)
197 KOG1147 Glutamyl-tRNA syntheta 82.4 1.6 3.5E-05 42.1 3.9 26 258-283 103-128 (712)
198 cd02950 TxlA TRX-like protein 82.1 17 0.00036 28.8 9.3 73 87-159 23-111 (142)
199 cd02996 PDI_a_ERp44 PDIa famil 80.3 5.6 0.00012 29.5 5.7 56 87-142 21-89 (108)
200 cd02951 SoxW SoxW family; SoxW 80.2 5.8 0.00012 30.4 5.9 20 86-105 16-35 (125)
201 PF06110 DUF953: Eukaryotic pr 79.6 3.6 7.8E-05 31.8 4.4 57 94-150 36-108 (119)
202 cd02957 Phd_like Phosducin (Ph 78.6 10 0.00022 28.6 6.7 59 87-148 27-93 (113)
203 cd02985 TRX_CDSP32 TRX family, 77.2 18 0.00038 26.7 7.6 58 87-144 18-84 (103)
204 cd03003 PDI_a_ERdj5_N PDIa fam 77.2 10 0.00022 27.7 6.2 56 87-142 21-83 (101)
205 cd02962 TMX2 TMX2 family; comp 76.4 11 0.00024 30.4 6.6 60 87-146 50-123 (152)
206 COG3011 Predicted thiol-disulf 75.8 19 0.0004 28.6 7.4 74 85-158 7-87 (137)
207 COG5494 Predicted thioredoxin/ 75.5 7.9 0.00017 32.9 5.5 71 86-156 11-86 (265)
208 COG3019 Predicted metal-bindin 75.0 17 0.00037 28.8 6.9 74 85-158 25-104 (149)
209 cd02952 TRP14_like Human TRX-r 74.9 14 0.0003 28.5 6.5 61 87-147 24-106 (119)
210 cd03004 PDI_a_ERdj5_C PDIa fam 74.2 7.4 0.00016 28.5 4.8 54 86-139 21-79 (104)
211 cd01976 Nitrogenase_MoFe_alpha 72.8 88 0.0019 29.7 13.4 95 85-183 172-267 (421)
212 cd02965 HyaE HyaE family; HyaE 72.7 7.8 0.00017 29.6 4.5 61 86-146 29-98 (111)
213 KOG0910 Thioredoxin-like prote 72.3 12 0.00026 30.1 5.7 59 86-144 63-128 (150)
214 cd02987 Phd_like_Phd Phosducin 71.8 16 0.00035 30.2 6.6 61 87-147 86-151 (175)
215 cd02997 PDI_a_PDIR PDIa family 71.1 18 0.00039 26.2 6.2 58 86-143 19-87 (104)
216 cd02999 PDI_a_ERp44_like PDIa 67.8 25 0.00054 25.8 6.4 51 87-139 21-78 (100)
217 cd02993 PDI_a_APS_reductase PD 67.0 23 0.00049 26.4 6.1 54 86-139 23-84 (109)
218 PTZ00102 disulphide isomerase; 65.8 35 0.00076 32.5 8.6 76 86-161 51-141 (477)
219 cd02961 PDI_a_family Protein D 65.6 28 0.00062 24.4 6.3 54 86-139 17-77 (101)
220 PRK11657 dsbG disulfide isomer 64.9 11 0.00023 33.2 4.4 24 85-108 118-141 (251)
221 cd02995 PDI_a_PDI_a'_C PDIa fa 64.7 24 0.00051 25.4 5.8 54 86-139 20-79 (104)
222 cd03005 PDI_a_ERp46 PDIa famil 63.9 22 0.00048 25.6 5.5 56 87-142 19-84 (102)
223 cd03020 DsbA_DsbC_DsbG DsbA fa 63.5 11 0.00023 31.6 4.1 25 84-108 77-101 (197)
224 cd03065 PDI_b_Calsequestrin_N 62.6 37 0.00081 26.2 6.6 35 108-144 63-100 (120)
225 PF13098 Thioredoxin_2: Thiore 62.4 8.6 0.00019 28.5 3.0 22 86-107 7-28 (112)
226 TIGR01130 ER_PDI_fam protein d 62.2 40 0.00087 31.8 8.2 74 87-160 21-111 (462)
227 cd03006 PDI_a_EFP1_N PDIa fami 62.2 25 0.00054 26.8 5.5 57 86-142 31-95 (113)
228 PRK10877 protein disulfide iso 61.6 12 0.00027 32.3 4.2 25 85-109 108-132 (232)
229 cd03002 PDI_a_MPD1_like PDI fa 60.3 25 0.00054 25.8 5.2 53 87-139 21-80 (109)
230 PF00148 Oxidored_nitro: Nitro 59.7 1.5E+02 0.0033 27.6 11.7 97 84-185 143-243 (398)
231 PF04134 DUF393: Protein of un 58.9 27 0.00058 26.2 5.2 67 90-156 1-76 (114)
232 cd03000 PDI_a_TMX3 PDIa family 58.2 35 0.00075 25.0 5.7 53 87-139 18-78 (104)
233 COG3118 Thioredoxin domain-con 57.9 29 0.00062 31.3 5.8 75 86-160 45-132 (304)
234 COG2761 FrnE Predicted dithiol 57.2 24 0.00052 30.5 5.1 25 85-109 5-29 (225)
235 PRK14478 nitrogenase molybdenu 55.9 2E+02 0.0043 27.8 13.2 95 85-183 191-286 (475)
236 KOG0907 Thioredoxin [Posttrans 55.1 57 0.0012 24.5 6.3 57 88-145 25-88 (106)
237 PF14595 Thioredoxin_9: Thiore 55.1 18 0.00039 28.3 3.7 66 85-152 42-122 (129)
238 PF13728 TraF: F plasmid trans 54.6 51 0.0011 28.2 6.7 54 86-139 122-189 (215)
239 KOG2501 Thioredoxin, nucleored 54.6 37 0.0008 27.6 5.4 36 86-121 34-77 (157)
240 cd03001 PDI_a_P5 PDIa family, 53.5 52 0.0011 23.6 5.9 53 87-139 21-78 (103)
241 TIGR01126 pdi_dom protein disu 53.1 20 0.00043 25.7 3.5 54 86-139 15-75 (102)
242 PLN02309 5'-adenylylsulfate re 52.8 68 0.0015 30.9 7.9 54 86-139 367-428 (457)
243 cd02988 Phd_like_VIAF Phosduci 52.7 21 0.00047 29.9 4.1 58 87-146 105-167 (192)
244 TIGR00424 APS_reduc 5'-adenyly 51.5 73 0.0016 30.7 7.9 53 87-139 374-434 (463)
245 cd01968 Nitrogenase_NifE_I Nit 50.4 2.2E+02 0.0048 26.7 14.3 95 85-183 158-253 (410)
246 cd02998 PDI_a_ERp38 PDIa famil 48.6 60 0.0013 23.2 5.6 54 86-139 20-81 (105)
247 TIGR02740 TraF-like TraF-like 46.9 76 0.0017 28.2 6.9 53 87-139 169-235 (271)
248 PRK13728 conjugal transfer pro 46.4 34 0.00073 28.6 4.2 32 88-119 73-108 (181)
249 KOG3425 Uncharacterized conser 44.3 50 0.0011 25.6 4.4 64 94-157 43-122 (128)
250 cd02972 DsbA_family DsbA famil 42.5 26 0.00057 24.4 2.8 22 88-109 1-22 (98)
251 PRK00293 dipZ thiol:disulfide 41.6 1.4E+02 0.003 29.6 8.4 56 87-143 477-547 (571)
252 cd02970 PRX_like2 Peroxiredoxi 41.4 46 0.001 25.7 4.2 49 93-141 33-89 (149)
253 cd03009 TryX_like_TryX_NRX Try 41.0 1E+02 0.0023 23.3 6.1 21 87-107 21-41 (131)
254 TIGR01283 nifE nitrogenase mol 40.6 3.4E+02 0.0073 26.0 12.3 95 85-183 197-292 (456)
255 CHL00073 chlN photochlorophyll 39.1 3.7E+02 0.0079 26.0 11.2 90 83-182 191-285 (457)
256 cd03023 DsbA_Com1_like DsbA fa 38.4 38 0.00083 26.2 3.3 24 85-108 6-29 (154)
257 cd03010 TlpA_like_DsbE TlpA-li 38.4 1.7E+02 0.0037 21.9 7.0 22 87-108 28-49 (127)
258 cd01967 Nitrogenase_MoFe_alpha 37.8 3.4E+02 0.0074 25.3 13.3 95 84-182 159-254 (406)
259 TIGR01282 nifD nitrogenase mol 36.8 4E+02 0.0086 25.7 13.9 94 85-182 207-301 (466)
260 cd02986 DLP Dim1 family, Dim1- 36.0 88 0.0019 24.0 4.7 57 88-144 18-81 (114)
261 cd01972 Nitrogenase_VnfE_like 35.5 3.9E+02 0.0085 25.3 12.5 96 85-184 161-263 (426)
262 cd00316 Oxidoreductase_nitroge 35.0 3.7E+02 0.008 24.8 12.9 97 84-184 151-249 (399)
263 PTZ00062 glutaredoxin; Provisi 34.7 2.6E+02 0.0057 23.7 8.0 66 87-159 20-95 (204)
264 PF01323 DSBA: DSBA-like thior 33.9 56 0.0012 26.6 3.8 35 87-121 1-40 (193)
265 PF09413 DUF2007: Domain of un 33.7 47 0.001 22.2 2.7 63 88-152 1-63 (67)
266 TIGR02681 phage_pRha phage reg 33.7 45 0.00099 25.2 2.8 26 134-159 2-28 (108)
267 PRK13703 conjugal pilus assemb 32.5 1.6E+02 0.0035 25.8 6.5 54 86-139 145-212 (248)
268 CHL00076 chlB photochlorophyll 31.6 4.6E+02 0.0099 25.7 10.1 97 84-184 162-263 (513)
269 PF03190 Thioredox_DsbH: Prote 31.1 77 0.0017 25.9 4.0 61 87-147 40-119 (163)
270 TIGR01764 excise DNA binding d 30.9 83 0.0018 18.9 3.4 29 128-156 21-49 (49)
271 PF06953 ArsD: Arsenical resis 30.7 1.1E+02 0.0024 23.8 4.6 42 104-145 34-84 (123)
272 PF13462 Thioredoxin_4: Thiore 30.0 50 0.0011 26.0 2.7 23 85-107 13-35 (162)
273 PTZ00102 disulphide isomerase; 27.5 1.8E+02 0.0038 27.7 6.5 73 87-159 378-466 (477)
274 cd02992 PDI_a_QSOX PDIa family 27.5 1.8E+02 0.0039 21.7 5.3 54 86-139 21-84 (114)
275 PLN00410 U5 snRNP protein, DIM 26.8 1.3E+02 0.0029 23.9 4.5 56 87-142 26-89 (142)
276 cd03021 DsbA_GSTK DsbA family, 26.1 1E+02 0.0023 25.8 4.1 33 87-119 2-38 (209)
277 cd03024 DsbA_FrnE DsbA family, 25.8 78 0.0017 26.0 3.3 20 88-107 1-20 (201)
278 cd03019 DsbA_DsbA DsbA family, 25.7 79 0.0017 25.3 3.3 24 85-108 16-39 (178)
279 cd01965 Nitrogenase_MoFe_beta_ 25.3 5.8E+02 0.013 24.1 13.8 96 85-184 155-271 (428)
280 PRK03147 thiol-disulfide oxido 25.3 3.4E+02 0.0074 21.4 8.4 20 87-106 64-83 (173)
281 cd02966 TlpA_like_family TlpA- 25.2 1.6E+02 0.0035 20.7 4.7 22 87-108 22-43 (116)
282 PF12728 HTH_17: Helix-turn-he 24.9 1.3E+02 0.0028 18.7 3.5 30 128-157 21-50 (51)
283 cd04911 ACT_AKiii-YclM-BS_1 AC 24.6 77 0.0017 22.4 2.5 23 96-118 15-37 (76)
284 PRK14477 bifunctional nitrogen 24.1 8.1E+02 0.018 26.0 10.9 95 85-183 184-279 (917)
285 PF09868 DUF2095: Uncharacteri 23.6 36 0.00077 26.1 0.7 61 98-158 24-91 (128)
286 cd05295 MDH_like Malate dehydr 23.4 1.7E+02 0.0036 28.2 5.3 68 95-162 3-89 (452)
287 PF12062 HSNSD: heparan sulfat 23.1 1.9E+02 0.004 28.0 5.4 48 84-141 59-106 (487)
288 cd03022 DsbA_HCCA_Iso DsbA fam 22.9 1E+02 0.0022 25.0 3.5 31 88-118 1-35 (192)
289 PRK09266 hypothetical protein; 22.8 1.6E+02 0.0035 25.8 4.9 59 102-160 197-260 (266)
290 KOG0912 Thiol-disulfide isomer 22.4 3.1E+02 0.0068 25.0 6.4 71 89-159 18-107 (375)
291 cd02964 TryX_like_family Trypa 22.4 3.5E+02 0.0076 20.5 6.5 19 88-106 21-39 (132)
292 cd01611 GABARAP Ubiquitin doma 21.6 82 0.0018 24.0 2.3 35 259-296 40-74 (112)
293 TIGR02739 TraF type-F conjugat 21.6 3.5E+02 0.0075 23.9 6.6 54 86-139 152-219 (256)
294 PF13899 Thioredoxin_7: Thiore 21.4 75 0.0016 22.1 2.0 52 87-139 20-79 (82)
295 PRK15412 thiol:disulfide inter 21.4 2.9E+02 0.0063 22.6 5.9 20 88-107 72-91 (185)
296 TIGR01130 ER_PDI_fam protein d 21.1 3.2E+02 0.007 25.5 6.9 72 86-158 366-454 (462)
297 cd02960 AGR Anterior Gradient 21.1 77 0.0017 24.9 2.1 19 87-105 26-44 (130)
298 cd02982 PDI_b'_family Protein 20.7 3.2E+02 0.0069 19.3 5.9 53 87-139 15-74 (103)
299 cd02971 PRX_family Peroxiredox 20.4 2.3E+02 0.0049 21.4 4.8 53 86-140 23-88 (140)
No 1
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=100.00 E-value=4.3e-36 Score=255.13 Aligned_cols=202 Identities=54% Similarity=0.902 Sum_probs=179.7
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHh--------
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQ-------- 156 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~-------- 156 (297)
+-+++||+|..||||-|||.+|.+.||+|++++||+..+.+++++.+.+||+|..+|+.+.||..|+.-|..
T Consensus 88 ~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~ 167 (370)
T KOG3029|consen 88 PLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQD 167 (370)
T ss_pred CceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEeccceechhHHHHHHHHHHhccCCCC
Confidence 347999999999999999999999999999999999999999999999999999999999999999887732
Q ss_pred ------hcCCC------C-----C----C-----CC----CCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcc
Q 022443 157 ------KLTPK------R-----K----A-----DS----PSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYI 206 (297)
Q Consensus 157 ------~~~~~------~-----~----~-----~~----~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (297)
-||.. + . . .+ .+.+.+.+.|..|+|++|.++++|.+|+++.+++++|.|+
T Consensus 168 l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf 247 (370)
T KOG3029|consen 168 LGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWF 247 (370)
T ss_pred HHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHH
Confidence 22310 0 0 0 01 1224588999999999999999999999999999999999
Q ss_pred cccCC----CCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhC-CCCcccCCCCChhhHHHHHHH
Q 022443 207 TSSGN----FSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALN-GREFLGMCFKYLISSSTCKHL 281 (297)
Q Consensus 207 ~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~L~-~~~fL~Gd~~T~ADi~l~~~L 281 (297)
...|+ |+.+|+.+..|.|+..||.+++.+++++++.+.+++++++++.|...|+ +++|+.|++|++||+.+|+.|
T Consensus 248 ~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl 327 (370)
T KOG3029|consen 248 SQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVL 327 (370)
T ss_pred HHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhh
Confidence 99998 9999999999999999999999999999999999999999999999885 689999999999999999987
Q ss_pred HHHHh
Q 022443 282 INFVH 286 (297)
Q Consensus 282 ~~l~~ 286 (297)
..+-+
T Consensus 328 ~sm~g 332 (370)
T KOG3029|consen 328 RSMEG 332 (370)
T ss_pred hHhhh
Confidence 66543
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.93 E-value=4.2e-25 Score=189.69 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=120.5
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH-H-HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCC-
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR- 162 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~-~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~- 162 (297)
.+++||+++.||+|++|+++|+++|++|+.+.++...++ + +++||.|+||+|+++|..|+||.+|++||+++|+...
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l 88 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPL 88 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCC
Confidence 369999999999999999999999999999999876543 4 5699999999999999999999999999999998653
Q ss_pred CCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCc
Q 022443 163 KADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNIT 242 (297)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 242 (297)
.+.++.+++.++.|..+++..+...... +... .. ...+
T Consensus 89 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~-------------------------------~~~~-----~~------~~~~ 126 (211)
T PRK09481 89 MPVYPVARGESRLMMHRIEKDWYSLMNK-------------------------------IVNG-----SA------SEAD 126 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HhcC-----CH------HHHH
Confidence 3445556677788877765433211100 0000 00 0112
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
...+.+.+.++.+++.|++++||+|+++|+||+++++++.++.
T Consensus 127 ~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~~ 169 (211)
T PRK09481 127 AARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRLP 169 (211)
T ss_pred HHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHHH
Confidence 3445677778877778888999999999999999999886553
No 3
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-24 Score=184.79 Aligned_cols=163 Identities=21% Similarity=0.325 Sum_probs=133.6
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHH--HHhc-CCccccEEEECCeEeechHHHHHHHHhhcCC-
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWS-EYKKVPILMVDGEQLVDSSAIIDQLDQKLTP- 160 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~--~~~~-p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~- 160 (297)
++.++||++..|||++|++++|+++||+|+++++|..++++ ++.| +.++||+|+++|+.+.||..|++||++.++.
T Consensus 7 ~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 7 DGTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred CCeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 37799999999999999999999999999999999988877 4588 8999999999999999999999999999993
Q ss_pred -CCCCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhc
Q 022443 161 -KRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKY 239 (297)
Q Consensus 161 -~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (297)
+.+|.||.++++.+.|.+++|..+......... . +...
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~---------------------------------------~--~~~e 125 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVA---------------------------------------A--KGGE 125 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHh---------------------------------------h--cCch
Confidence 456788889999999999999765433211000 0 0011
Q ss_pred CCcHHHHHHHHHHHHHHHHhC-CCCcccCCCCChhhHHHHHHHHHHHhhc
Q 022443 240 NITDERAALYEAAETWVDALN-GREFLGMCFKYLISSSTCKHLINFVHNL 288 (297)
Q Consensus 240 ~i~~~~~~l~~~l~~~~~~L~-~~~fL~Gd~~T~ADi~l~~~L~~l~~~~ 288 (297)
..+...+++.+.+..+++.|. +++|++|+++++.|+++++++.++....
T Consensus 126 ~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~~~~~~~ 175 (231)
T KOG0406|consen 126 EQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFERWLAVL 175 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHHHHHHHH
Confidence 223456778888887888887 8899999999999999998888876544
No 4
>PRK10387 glutaredoxin 2; Provisional
Probab=99.91 E-value=1.8e-23 Score=179.13 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=121.5
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC-HHHHHhcCCccccEE-EECCeEeechHHHHHHHHhhcCCCCCCC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIKWSEYKKVPIL-MVDGEQLVDSSAIIDQLDQKLTPKRKAD 165 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~p~~~vP~l-~~~g~~l~eS~~I~~yL~~~~~~~~~~~ 165 (297)
++||+++.||||+||+++|+++||+|+.++++... ....+.+|.++||+| .++|..|+||.+|++||+++|+.+.+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~- 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT- 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-
Confidence 58999999999999999999999999999886543 233678999999999 579999999999999999999865553
Q ss_pred CCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHH-------HHHhhHHHHHHHHHHHHhh
Q 022443 166 SPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLT-------AKYAGAAAMYFVSKKLKKK 238 (297)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~ 238 (297)
+.+++.+.+|+.++...+...+.+.+.... + .. +. .+... ....|... ...
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~---~~-~~~~~~~~~~~~~~~~~~~~--~~~------ 137 (210)
T PRK10387 80 -GKRSPAIEEWLRKVFGYLNKLLYPRFAKAD------L---PE---FA-TPSARQYFIDKKEASIGDFD--ALL------ 137 (210)
T ss_pred -CcccHHHHHHHHHHHHHhhcchhcccccCC------C---cc---cC-CHHHHHHHHHhHHhccCCHH--HHH------
Confidence 236788999998887665544333221100 0 00 00 00000 00111000 000
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHh
Q 022443 239 YNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVH 286 (297)
Q Consensus 239 ~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~ 286 (297)
.......+.+.+.++.++++|++ +||+||++|+||+++++++..+..
T Consensus 138 ~~~~~~~~~~~~~l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~ 184 (210)
T PRK10387 138 AHTPGLIKEINADLRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTL 184 (210)
T ss_pred hcCHHHHHHHHHHHHHHHHHhcC-ccccCCCCCHHHHHHHHHHhccee
Confidence 01124456778888877778876 999999999999999998766543
No 5
>PLN02473 glutathione S-transferase
Probab=99.90 E-value=3.7e-23 Score=177.82 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=120.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCC
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~ 161 (297)
.++||+.+.||+|+||+++|+++||+|+.+.++... .++ +++||.|+||+|+++|..|+||.+|++||+++++..
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 479999999999999999999999999999887542 233 568999999999999999999999999999999743
Q ss_pred ---CCCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhh
Q 022443 162 ---RKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (297)
Q Consensus 162 ---~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (297)
..+.++.++++++.|..++++.+...+...++.. .+... .+ . ....
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-------------~~--------~-~~~~ 130 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINL---------VFKPR-------------LG--------E-PCDV 130 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHH---------Hhccc-------------cc--------C-CCCh
Confidence 2344556678899999888765544322111100 00000 00 0 0000
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 239 YNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 239 ~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
..++....++...++.+++.|++++|++||++|+||+++++.+..+.
T Consensus 131 ~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~~~~~~~~~~ 177 (214)
T PLN02473 131 ALVEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLTHMPGMRYIM 177 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHHH
Confidence 01122345667777767778888899999999999999998876543
No 6
>PRK15113 glutathione S-transferase; Provisional
Probab=99.90 E-value=6e-23 Score=176.71 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=118.4
Q ss_pred CeEEEEEeC--CCccHHHHHHHHhHCCCCeEEEEcCCCCH----HH-HHhcCCccccEEEECCeEeechHHHHHHHHhhc
Q 022443 86 KEVVLYQYE--ACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 86 ~~~~Ly~~~--~sp~~~~vr~~L~~~gi~~~~~~v~~~~~----~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~ 158 (297)
.+++||+.+ .||+|++|+++|+++||+|+.+.++...+ ++ .++||.|+||+|++||..|+||.+|++||++++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 468999976 69999999999999999999999986432 33 469999999999999999999999999999999
Q ss_pred CCCC----CCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHH
Q 022443 159 TPKR----KADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKK 234 (297)
Q Consensus 159 ~~~~----~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (297)
+.+. ++.++.+++++++|+.|++..+......... .. .+. .
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~----------~~----------------~~~--------~- 128 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLRSDLMPLREERPT----------DV----------------VFA--------G- 128 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCcc----------ch----------------hcc--------C-
Confidence 8643 3445566788999999987655432110000 00 000 0
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHHhCC-CCcccCCCCChhhHHHHHHHHHHH
Q 022443 235 LKKKYNITDERAALYEAAETWVDALNG-REFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 235 ~~~~~~i~~~~~~l~~~l~~~~~~L~~-~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
.......+...+++.+.++.+++.|++ ++|++|+ +|+|||++++.+..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~-~TlADi~l~~~l~~~~ 179 (214)
T PRK15113 129 AKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE-WCIADTDLALMLNRLV 179 (214)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC-ccHHHHHHHHHHHHHH
Confidence 000001223445567777766667864 5799996 9999999999876553
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-22 Score=173.30 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=121.4
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--H-HH-HHhcCCccccEEEECCe-EeechHHHHHHHHhhcCCC-
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--K-KE-IKWSEYKKVPILMVDGE-QLVDSSAIIDQLDQKLTPK- 161 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~-~~-~~~~p~~~vP~l~~~g~-~l~eS~~I~~yL~~~~~~~- 161 (297)
++||+.+.||||.||+++|.++|++|+.+.++... + ++ ..+||.|+||+|+++|. +|+||.+|++||+++|+.+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 58999999999999999999999999999998763 2 33 46999999999999665 8999999999999999987
Q ss_pred CCCCCCC---CcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhh
Q 022443 162 RKADSPS---GDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (297)
Q Consensus 162 ~~~~~~~---~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (297)
.++.++. .++.+..|..+.+..+...+....... .+... .. ..
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~--~~-----~~ 126 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL---------------------------LGSEP--EL-----LE 126 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh---------------------------ccccc--cc-----cH
Confidence 5555554 456666777777666555543322100 00000 00 00
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 239 YNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 239 ~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
..++...+++...+..+++.|++++|++||++|+||+.+++++..+
T Consensus 127 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~tiAD~~~~~~~~~~ 172 (211)
T COG0625 127 AALEAARAEIRALLALLEALLADGPYLAGDRFTIADIALAPLLWRL 172 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHh
Confidence 1223456778888887777899999999999999999999887764
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.89 E-value=8.5e-23 Score=175.83 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=115.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEE-----CC--eEeechHHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMV-----DG--EQLVDSSAIIDQL 154 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~-----~g--~~l~eS~~I~~yL 154 (297)
+++||+.+ +|+|++|+++|+++||+|+.+.++... .++ .++||.|+||+|++ || .+|+||.+|++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 47999877 799999999999999999999987543 234 56999999999997 45 4799999999999
Q ss_pred HhhcCCCCCCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHH
Q 022443 155 DQKLTPKRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKK 234 (297)
Q Consensus 155 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (297)
+++++. ..+.++.+++++..|+.|.+..+...+..... +.. .... . .+
T Consensus 80 ~~~~~~-l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~-~-~~------------------ 127 (215)
T PRK13972 80 AEKTGL-FLSHETRERAATLQWLFWQVGGLGPMLGQNHH---------FNH--AAPQ-T-IP------------------ 127 (215)
T ss_pred HHhcCC-CCCCCHHHHHHHHHHHHHHhhccCcceeeeee---------eec--cCCC-C-Cc------------------
Confidence 999852 23345566888999999987665433211000 000 0000 0 00
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 235 LKKKYNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 235 ~~~~~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
..++...+.+...+..+++.|++++||+||++|+|||++++++..+.
T Consensus 128 ----~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~ 174 (215)
T PRK13972 128 ----YAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWT 174 (215)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHhccCccccCCCCCHHHHHHHHHHHHHh
Confidence 01112334566777766668888899999999999999988876664
No 9
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.88 E-value=1e-21 Score=168.46 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=118.7
Q ss_pred EEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC-HHHHHhcCCccccEEE-ECCeEeechHHHHHHHHhhcCCCCCCCC
Q 022443 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKRKADS 166 (297)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~p~~~vP~l~-~~g~~l~eS~~I~~yL~~~~~~~~~~~~ 166 (297)
+||++..||||+||+++|+++|++|+.+.++... ...++.||.++||+|+ +||..++||.+|++||+++|+.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~-- 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT-- 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC--
Confidence 5899999999999999999999999998876433 2346799999999998 79999999999999999999764332
Q ss_pred CCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHHH
Q 022443 167 PSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERA 246 (297)
Q Consensus 167 ~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 246 (297)
+.++.++.+|+.+++..+...+.+.+..... ..+.... ...++.............-....+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (209)
T TIGR02182 79 GKVSPEIEAWLRKVTGYANKLLLPRFAKSDL------------PEFATQS--ARKYFTDKKEASAGNFSALLNHTPGLLE 144 (209)
T ss_pred CCChHHHHHHHHHHHHHhhhhhccccccCCC------------cccCCHH--HHHHHHHHHHHhcCCHHHHHccCHHHHH
Confidence 3357888999988877665544332211000 0000000 0001100000000000000001134456
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 247 ALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 247 ~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
.+.+.++.++++|++++|++| ++|+||+++++++..+
T Consensus 145 ~~~~~l~~le~~L~~~~~l~g-~~TiADi~l~~~l~~~ 181 (209)
T TIGR02182 145 EINADLEELDKLIDGPNAVNG-ELSEDDILVFPLLRNL 181 (209)
T ss_pred HHHHHHHHHHHHHhCccccCC-CCCHHHHHHHHHhcCe
Confidence 778888877779999999965 5999999999987543
No 10
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-22 Score=161.77 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=117.3
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH-----HH-HhcCCccccEEEECCeEeechHHHHHHHHhhcC
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-----EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~-----~~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~ 159 (297)
.+.+||+|..|.+++|||++|..+||+|+.+.++....+ ++ +.||.++||.|++||.++.||.||++||+++|+
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 467999999999999999999999999999999864331 34 499999999999999999999999999999999
Q ss_pred CCC-CCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhh
Q 022443 160 PKR-KADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (297)
Q Consensus 160 ~~~-~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (297)
++. ++.++..++..++....+...+.+.-...++. ++ .++ +..
T Consensus 84 ~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~----------~l-------------------------~ek-~~~ 127 (217)
T KOG0868|consen 84 DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLK----------ML-------------------------NEK-EPG 127 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHH----------Hh-------------------------ccc-ccc
Confidence 865 45677778888888888776655543222221 00 000 000
Q ss_pred cCCcHHHHHHHHHHHHHHHHhC--CCCcccCCCCChhhHHHHHHHHHH
Q 022443 239 YNITDERAALYEAAETWVDALN--GREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 239 ~~i~~~~~~l~~~l~~~~~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
++..-....+-+.+..+++.|. .++|.+||++|+||+++.+.+.+.
T Consensus 128 ~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiADl~L~pqv~nA 175 (217)
T KOG0868|consen 128 YGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIADLCLPPQVYNA 175 (217)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhhhccchhhhhh
Confidence 0101111223333443444443 478999999999999999887654
No 11
>PLN02395 glutathione S-transferase
Probab=99.88 E-value=1.7e-21 Score=167.46 Aligned_cols=166 Identities=13% Similarity=0.140 Sum_probs=118.8
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCC
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~ 161 (297)
.++||+.+.| +++||+++|.++|++|+.+.++... .++ .++||.|+||+|+++|.+|+||.+|++||+++++..
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 3799987654 6999999999999999999987632 234 469999999999999999999999999999999742
Q ss_pred ---CCCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhh
Q 022443 162 ---RKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (297)
Q Consensus 162 ---~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (297)
.++.++.+++++.+|..|.+..+...+....+... +.. ..+.. . ..
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------------~~~~~---~------~~ 129 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHIL------FAS----------------KMGFP---A------DE 129 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHH------hhh----------------hccCC---C------cH
Confidence 34455667889999999887665444322111000 000 00000 0 00
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 239 YNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 239 ~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
..++...+++.+.++.+++.|++++|++|+++|+||+++++++..+
T Consensus 130 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~ 175 (215)
T PLN02395 130 KVIKESEEKLAKVLDVYEARLSKSKYLAGDFVSLADLAHLPFTEYL 175 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCcCHHHHHHHHHHHHH
Confidence 0112345667777887777888889999999999999999876655
No 12
>PRK11752 putative S-transferase; Provisional
Probab=99.87 E-value=1.7e-21 Score=172.84 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=116.0
Q ss_pred CCCeEEEEEeCCCccHHHHHHHHhHC------CCCeEEEEcCCCCH----HH-HHhcCCccccEEEEC----CeEeechH
Q 022443 84 VPKEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINK----KE-IKWSEYKKVPILMVD----GEQLVDSS 148 (297)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~------gi~~~~~~v~~~~~----~~-~~~~p~~~vP~l~~~----g~~l~eS~ 148 (297)
..++++||+.+ ||+|++|+++|+++ |++|+.+.++.... ++ .++||.|+||+|+++ |..|+||.
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 35689999976 99999999999997 89999998875432 23 569999999999984 37899999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHH
Q 022443 149 AIIDQLDQKLTPKRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAM 228 (297)
Q Consensus 149 ~I~~yL~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (297)
+|++||+++|+. ..+.++.++++++.|+.|.+..+ ..+...+. ..+...
T Consensus 120 AIl~YL~~~~~~-L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~---------------------------~~~~~~-- 168 (264)
T PRK11752 120 AILLYLAEKFGA-FLPKDLAARTETLNWLFWQQGSA-PFLGGGFG---------------------------HFYAYA-- 168 (264)
T ss_pred HHHHHHHHhcCC-cCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHH---------------------------HHHHhC--
Confidence 999999999973 44445566788889988876432 11100000 000000
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 229 YFVSKKLKKKYNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 229 ~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
. . .....++...+++.+.++.++++|++++||+||++|+|||++++++..+
T Consensus 169 -~--~--~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd~~TlADi~l~~~l~~l 219 (264)
T PRK11752 169 -P--E--KIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGDEYTIADIAIWPWYGNL 219 (264)
T ss_pred -C--c--cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHH
Confidence 0 0 0000112334566778887777898889999999999999999887554
No 13
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.87 E-value=2.7e-21 Score=164.50 Aligned_cols=156 Identities=16% Similarity=0.177 Sum_probs=114.1
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-----HH-HHhcCCccccEEEE-CCeEeechHHHHHHHHhhcCC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-----KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTP 160 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-----~~-~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~~~~~~ 160 (297)
++||+...+ ++.+++++|+++||+|+.+.++...+ ++ .++||.|+||+|++ ||.+|+||.+|++||+++++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 579998865 69999999999999999998876422 33 46999999999985 889999999999999999986
Q ss_pred CCC-C-CCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhh
Q 022443 161 KRK-A-DSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (297)
Q Consensus 161 ~~~-~-~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (297)
..+ + .++.+++++..|+.+++..+...+...+. .. . .+ .
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~--------------~~-~---~~-------------~-------- 120 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFR--------------PD-T---PE-------------E-------- 120 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccC--------------CC-C---hH-------------H--------
Confidence 543 2 34556778888888877665443221110 00 0 00 0
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 239 YNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 239 ~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
......+.+.+.++.+++.|++++||+|+++|+||+++++.+..+
T Consensus 121 -~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~ 165 (201)
T PRK10542 121 -YKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLFTVLRWA 165 (201)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHHHHHHHHh
Confidence 001233556777777777888889999999999999999876554
No 14
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.86 E-value=3e-21 Score=164.48 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=114.8
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH-H-HHhcCCccccEEE-ECCeEeechHHHHHHHHhhcCCCCC-
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKRK- 163 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~-~-~~~~p~~~vP~l~-~~g~~l~eS~~I~~yL~~~~~~~~~- 163 (297)
++||++..||++++|+++|+++||+|+.++++...++ . .++||.|+||+|+ ++|..|+||.+|++||+++++...+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 4899999999999999999999999999988865433 2 3489999999998 5889999999999999999865433
Q ss_pred CCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcH
Q 022443 164 ADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITD 243 (297)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 243 (297)
+.++.+++++++|..|.+..+...+..... .... + .. .....++.
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---------------~-------~~--~~~~~~~~ 125 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDAALVSVRE-----------QARP---------------A-------AQ--QSEDELLR 125 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhCc---------------c-------cc--ccHHHHHH
Confidence 344455677788877766544322110000 0000 0 00 00001123
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 244 ERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
..+++...++.+++.|.+++ |+||++|+||+++++.+..+
T Consensus 126 ~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~~~l~~~ 165 (202)
T PRK10357 126 QREKINRSLDALEGYLVDGT-LKTDTVNLATIAIACAVGYL 165 (202)
T ss_pred HHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHHHHHHHH
Confidence 44667788887777888777 99999999999999887643
No 15
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.85 E-value=9.3e-21 Score=162.25 Aligned_cols=163 Identities=19% Similarity=0.182 Sum_probs=113.8
Q ss_pred EEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC-----HHH-HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCC
Q 022443 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (297)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~-----~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~ 162 (297)
+||++..||+|++|+++|+++||+|+.+.++... .++ .++||.++||+|++||..|+||.+|++||+++++...
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999888521 233 4589999999999999999999999999999998654
Q ss_pred C-CCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCC
Q 022443 163 K-ADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNI 241 (297)
Q Consensus 163 ~-~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 241 (297)
+ +.++.+++.+.+|..+++..+.......+. .++. +..+.. .. ...
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------~~~~-------------~~~~~~-----~~-----~~~ 127 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVL----------QYLR-------------EKLGVE-----EE-----ARN 127 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHH----------HHHH-------------hhcCCC-----HH-----HHH
Confidence 3 334455788888888776544322110000 0000 000000 00 001
Q ss_pred cHHHHHHHHHHHHHHHHhCC--CCcccCCCCChhhHHHHHHHHHH
Q 022443 242 TDERAALYEAAETWVDALNG--REFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~--~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
+...+.+.+.++.+++.|++ ++||+|+++|+|||++++.+..+
T Consensus 128 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~~~~~l~~~ 172 (210)
T TIGR01262 128 RWYQHWISKGFAALEALLQPHAGAFCVGDTPTLADLCLVPQVYNA 172 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCHHHHHHHHHHHHH
Confidence 11234577777877778875 46999999999999999987654
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=99.85 E-value=1.4e-20 Score=161.89 Aligned_cols=142 Identities=20% Similarity=0.278 Sum_probs=99.1
Q ss_pred EeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHH--HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCCCCCCCC
Q 022443 92 QYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSG 169 (297)
Q Consensus 92 ~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~--~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~ 169 (297)
.+..||||+||+++|+++|++|+.+.+|...+++ +++||.|+||+|+++|.+|+||.+|++||+++|+...+ .++.+
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l-~~~~~ 94 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL-KTPAE 94 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC-CCHHH
Confidence 3556999999999999999999999999765543 56999999999999999999999999999999976433 12211
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHHHHHH
Q 022443 170 DDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALY 249 (297)
Q Consensus 170 ~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~l~ 249 (297)
++. + +..+...+..... .. ...+...+.+.
T Consensus 95 ~a~---i----~~~~~~~~~~~~~--------------------------------------~~-----~~~~~~~~~~~ 124 (213)
T PLN02378 95 FAS---V----GSNIFGTFGTFLK--------------------------------------SK-----DSNDGSEHALL 124 (213)
T ss_pred HHH---H----HHHHHHHHHHHHh--------------------------------------cC-----ChhhHHHHHHH
Confidence 221 1 1111111000000 00 00011224556
Q ss_pred HHHHHHHHHhC--CCCcccCCCCChhhHHHHHHHHHH
Q 022443 250 EAAETWVDALN--GREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 250 ~~l~~~~~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
+.++.+++.|+ +++|++||++|+||+++++++.++
T Consensus 125 ~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l 161 (213)
T PLN02378 125 VELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHL 161 (213)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHH
Confidence 66777777776 579999999999999999997664
No 17
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.84 E-value=9.4e-20 Score=158.07 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=63.1
Q ss_pred eCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HH-HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCC
Q 022443 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (297)
Q Consensus 93 ~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~ 162 (297)
...||||++|+++|.++||+|+.+.+|...+ ++ +++||.|+||+|+++|..|+||.+|++||+++|+...
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~ 87 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPR 87 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCC
Confidence 4679999999999999999999999998765 33 5699999999999999999999999999999997643
No 18
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=154.84 Aligned_cols=193 Identities=24% Similarity=0.294 Sum_probs=135.6
Q ss_pred CCCCCeEEEEEeC-------CCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHH
Q 022443 82 DLVPKEVVLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (297)
Q Consensus 82 ~~~~~~~~Ly~~~-------~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL 154 (297)
.-..+.+.||+|+ .||||.||..+|+..+||||.++..... .+..|++|.++.||+++.||+-|..+|
T Consensus 40 d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~-----rSr~G~lPFIELNGe~iaDS~~I~~~L 114 (281)
T KOG4244|consen 40 DYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKR-----RSRNGTLPFIELNGEHIADSDLIEDRL 114 (281)
T ss_pred ccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccccee-----eccCCCcceEEeCCeeccccHHHHHHH
Confidence 3445779999997 4899999999999999999999877532 378999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHH
Q 022443 155 DQKLTPKRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKK 234 (297)
Q Consensus 155 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (297)
.++++-+.. +.++++++.+++.+++|++|.+.+....+.... -+.....+..-..+ ....+.+++... ...++
T Consensus 115 ~~hf~~~~~-L~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~-~~~~~~~~~~l~~~--l~~~l~~~~~~~---~f~~k 187 (281)
T KOG4244|consen 115 RKHFKIPDD-LSAEQRAQSRALSRMADNHLFWILLYYKGADDA-WLNTDRKLIGLPGF--LFPLLLPLFWKA---IFGKK 187 (281)
T ss_pred HHHcCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH-HHHHHHhccCcccc--chHHHHHHHHHH---HHHHH
Confidence 999986653 457789999999999999999998765553211 01111111111111 112222222111 11111
Q ss_pred HHhhc--CCc-----HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHh
Q 022443 235 LKKKY--NIT-----DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVH 286 (297)
Q Consensus 235 ~~~~~--~i~-----~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~ 286 (297)
..++. .+. +..+-+.+-|..+.+.|++++||+||++|-+|+++|++|++++|
T Consensus 188 v~~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y 246 (281)
T KOG4244|consen 188 VYKRSTGAIGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY 246 (281)
T ss_pred HHHHhhccccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec
Confidence 11111 122 22233456666666689999999999999999999999999998
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.83 E-value=6.5e-20 Score=162.26 Aligned_cols=142 Identities=23% Similarity=0.296 Sum_probs=100.2
Q ss_pred eCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHH--HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCCCCCCCCc
Q 022443 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSGD 170 (297)
Q Consensus 93 ~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~--~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~~ 170 (297)
...||||++|+++|+++||+|+.+.++..++++ +++||.|+||+|+++|..|+||.+|++||+++|+.+.+ .++.++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L-~~~~er 148 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPL-ATPPEK 148 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCC-CCHHHH
Confidence 344999999999999999999999998765533 56999999999999999999999999999999987544 233334
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 022443 171 DEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYE 250 (297)
Q Consensus 171 a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~l~~ 250 (297)
+++..++ ...+. . ++. . . ...+...+++.+
T Consensus 149 a~i~~~l---~~~~~----~-~~~-------------~------------------------~-----~~~~~~~~~l~~ 178 (265)
T PLN02817 149 ASVGSKI---FSTFI----G-FLK-------------S------------------------K-----DPGDGTEQALLD 178 (265)
T ss_pred HHHHHHH---HHHHH----H-Hhc-------------c------------------------C-----CcchHHHHHHHH
Confidence 4433221 11100 0 000 0 0 000111234556
Q ss_pred HHHHHHHHhC-CCCcccCCCCChhhHHHHHHHHHHH
Q 022443 251 AAETWVDALN-GREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 251 ~l~~~~~~L~-~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
.++.+++.|+ +++||+||++|+|||+++++|.++-
T Consensus 179 ~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~ 214 (265)
T PLN02817 179 ELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLE 214 (265)
T ss_pred HHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHH
Confidence 6776777776 4799999999999999999887653
No 20
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.82 E-value=4.4e-19 Score=151.67 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=101.6
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH-----HH---HhcCCccccEEEECCeEeechHHHHHHHHhh
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-----EI---KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~-----~~---~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
+.++||+++.++++++||++|+++|++|+.+.++..... ++ +.||.|+||+|++||.+|+||.+|++||+++
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~ 82 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKK 82 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHH
Confidence 458999999999999999999999999999977532111 11 3799999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHh
Q 022443 158 LTPKRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKK 237 (297)
Q Consensus 158 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (297)
++..+ ..+..+...|..+.. +..... .+.. . .. ....
T Consensus 83 ~~~~~----~~~~~~~~~~~~~~~--~~~~~~-~~~~--------------------~-----~~-------~~~~---- 119 (205)
T PTZ00057 83 YKICG----ESELNEFYADMIFCG--VQDIHY-KFNN--------------------T-----NL-------FKQN---- 119 (205)
T ss_pred cCCCC----CCHHHHHHHHHHHHH--HHHHHH-HHhh--------------------h-----HH-------HHHH----
Confidence 97421 112233333332221 100000 0000 0 00 0000
Q ss_pred hcCCcHHHHHHHHHHHHHHHHhCC--CCcccCCCCChhhHHHHHHHHHHH
Q 022443 238 KYNITDERAALYEAAETWVDALNG--REFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 238 ~~~i~~~~~~l~~~l~~~~~~L~~--~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
..+...+.+.+.+..+++.|++ ++||+||++|+||+++++.+..+.
T Consensus 120 --~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~ 167 (205)
T PTZ00057 120 --ETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIE 167 (205)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHH
Confidence 0012234556666666666754 389999999999999998776543
No 21
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.3e-19 Score=154.52 Aligned_cols=164 Identities=19% Similarity=0.174 Sum_probs=123.8
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH----HH-HHhcCCccccEEEECCeEeechHHHHHHHHhhcC-C
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT-P 160 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~----~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~-~ 160 (297)
.++||+.+.+|.|++|.++++++|++|+.+.++.... ++ +++||.++||+|+|+|..++||.+|+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999998775332 33 5699999999999999999999999999999997 1
Q ss_pred -C-CCCCCCCCcHHHHHHHHHHHhhhhhhhh--hhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHH
Q 022443 161 -K-RKADSPSGDDEEKKWRGWVDNHLVHLLS--PNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLK 236 (297)
Q Consensus 161 -~-~~~~~~~~~a~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (297)
. .++.++.+++.+.+|+.|.++.+..... ..+.. . .++.. ..
T Consensus 82 ~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p----------~----------------~~~~~---~~----- 127 (226)
T KOG0867|consen 82 GGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAP----------L----------------LVGLP---LN----- 127 (226)
T ss_pred CcccCCcCHHHHHHHHHHHHhhhcccccccccceeeec----------c----------------eeccc---Cc-----
Confidence 1 2234455678999999888877766532 11110 0 00000 00
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 237 KKYNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 237 ~~~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
.........++...++.++..|.++.|+.|+++|+||+.+.+.+..+.
T Consensus 128 -~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~tlADl~~~~~~~~~~ 175 (226)
T KOG0867|consen 128 -PTAVKELEAKLRKALDNLERFLKTQVYLAGDQLTLADLSLASTLSQFQ 175 (226)
T ss_pred -chhhHHHHHHHHHHHHHHHHHHccCCcccCCcccHHHHHHhhHHHHHh
Confidence 001234456777888877778889999999999999999999988875
No 22
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=99.78 E-value=1.8e-18 Score=137.96 Aligned_cols=117 Identities=54% Similarity=0.802 Sum_probs=109.3
Q ss_pred CcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCC-cHHHHH
Q 022443 169 GDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNI-TDERAA 247 (297)
Q Consensus 169 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i-~~~~~~ 247 (297)
.+.++.+|..|+|++|.+.+.|.+|+.+.+++++|+|+++.++|+..++.+.++.|...|+.+++.+++++++ ++.++.
T Consensus 4 ~~~~e~kWr~W~d~~lv~~~~pniyrt~~ea~~~f~yi~~~~~f~~~er~~~~~~Ga~aM~~isk~lkk~~~i~~D~r~~ 83 (149)
T cd03197 4 ADPEEMKWRKWADDHLVHLISPNIYRTWSEALASFDYITPSGYFGYWEKFFAKYVGAAAMYLISKYLKKPRLLQDDVREW 83 (149)
T ss_pred chHHHHHHHHHHHhhhHhhccHHHhCCHHHHHHhhhhHhcCCCccHHHHHHHHHhhHHHHHHHHHHhccccCCCchHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999 689999
Q ss_pred HHHHHHHHHHHhC-CCCcccCCCCChhhHHHHHHHHHHH
Q 022443 248 LYEAAETWVDALN-GREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 248 l~~~l~~~~~~L~-~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
++++++.|.+.+. +++|++|++||+||+++|+.|..+-
T Consensus 84 L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e 122 (149)
T cd03197 84 LYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVE 122 (149)
T ss_pred HHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999665 5689999999999999999986554
No 23
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.71 E-value=2.6e-17 Score=117.92 Aligned_cols=72 Identities=40% Similarity=0.688 Sum_probs=66.1
Q ss_pred EEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HH-HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCC
Q 022443 90 LYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (297)
Q Consensus 90 Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~ 161 (297)
||++++||||+||+++|+++||+|+.+.++...+ .+ .+++|.++||+|++||..++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999987654 33 459999999999999999999999999999999864
No 24
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.71 E-value=5.8e-17 Score=120.02 Aligned_cols=85 Identities=28% Similarity=0.442 Sum_probs=75.2
Q ss_pred hhccccCCCCCCCCCCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH-H-HHhcCCccccEEEEC-CeEeech
Q 022443 71 QSVYAKEPLPTDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMVD-GEQLVDS 147 (297)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~-~-~~~~p~~~vP~l~~~-g~~l~eS 147 (297)
+++.+++++.....+++++||+++.||+|++++++|+++|++|+.+.++...+. + .+.||.++||+|+++ |..+.||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS 81 (89)
T cd03055 2 SKHLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYES 81 (89)
T ss_pred ccccccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECH
Confidence 456788888877888999999999999999999999999999999999865543 3 458999999999986 8999999
Q ss_pred HHHHHHHH
Q 022443 148 SAIIDQLD 155 (297)
Q Consensus 148 ~~I~~yL~ 155 (297)
.+|++||+
T Consensus 82 ~aI~~yLe 89 (89)
T cd03055 82 LIICEYLD 89 (89)
T ss_pred HHHHHhhC
Confidence 99999985
No 25
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.70 E-value=7.1e-17 Score=116.11 Aligned_cols=73 Identities=67% Similarity=1.183 Sum_probs=66.6
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEEC----CeEeechHHHHHHHHhhcC
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVD----GEQLVDSSAIIDQLDQKLT 159 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~----g~~l~eS~~I~~yL~~~~~ 159 (297)
+++||+++.||||++++.+|.++||+|+.+++++..+++++.+|.++||+|+++ |.+++||.+|++||+++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 489999999999999999999999999999998766666788999999999975 7899999999999998753
No 26
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.70 E-value=7.1e-17 Score=116.23 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=63.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHH-HHhcCCccccEEEE--CCeEeechHHHHHHHHhhc
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKE-IKWSEYKKVPILMV--DGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~-~~~~p~~~vP~l~~--~g~~l~eS~~I~~yL~~~~ 158 (297)
+++||+++.||||+||+++|+++||+|+.++++... .++ .+.||.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 479999999999999999999999999999987543 234 46999999999998 4789999999999999875
No 27
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.8e-16 Score=131.83 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=109.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC-HHHHH-hcCCccccEEEECCeEeechHHHHHHHHhhcCCCCCC
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKA 164 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~-~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~~ 164 (297)
.++|++++...++..+|++|...|++|+.+.+...+ .+.++ ..|.|+||+|.+||..|.+|.+|++||+++++-.+.
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl~Gk- 81 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFGLAGK- 81 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhCcCCC-
Confidence 589999999999999999999999999999998666 56666 579999999999999999999999999999984332
Q ss_pred CCCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCc-H
Q 022443 165 DSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNIT-D 243 (297)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~-~ 243 (297)
..+...|++.+.+.+.-.....+. .... .....+....++ .
T Consensus 82 -----t~~E~a~vD~i~d~~~D~~~~~~~---------------------------~~~~------~~~~g~~~~~~~~~ 123 (206)
T KOG1695|consen 82 -----TEEEEAWVDMIVDQFKDFRWEIFR---------------------------QPYT------APEAGKSEEELDKL 123 (206)
T ss_pred -----CHHHHHHHHHHHHhhhhHHHHHHH---------------------------Hhhh------hhhhccchhhhhhh
Confidence 344445555444332222111000 0000 000000000111 1
Q ss_pred HHHHHHHHHHHHHHHhC--CCCcccCCCCChhhHHHHHHHHHHHhh
Q 022443 244 ERAALYEAAETWVDALN--GREFLGMCFKYLISSSTCKHLINFVHN 287 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l~~~ 287 (297)
...+....++.+.+.|. ++.||+||++|+||+.++-.+..+...
T Consensus 124 ~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~ 169 (206)
T KOG1695|consen 124 YLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEEL 169 (206)
T ss_pred hccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHh
Confidence 12233344443444454 457999999999999999999888775
No 28
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.66 E-value=3.7e-16 Score=110.58 Aligned_cols=69 Identities=32% Similarity=0.586 Sum_probs=61.3
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HHHHhcCCccccEEEEC-CeEeechHHHHHHHHh
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~p~~~vP~l~~~-g~~l~eS~~I~~yL~~ 156 (297)
++||+++.||||+|||++|.++|++|+.+.++.... ..++.+|.++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 579999999999999999999999999999886543 33568899999999985 9999999999999975
No 29
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.66 E-value=4.3e-16 Score=110.65 Aligned_cols=71 Identities=23% Similarity=0.429 Sum_probs=64.2
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HH-HHhcCCccccEEEECCeEeechHHHHHHHHhhc
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~ 158 (297)
++||+.+.||+|++++++|+++|++|+.++++...+ ++ .+.+|.++||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 589999999999999999999999999999986544 34 458999999999999999999999999999875
No 30
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.65 E-value=5.4e-16 Score=114.22 Aligned_cols=69 Identities=26% Similarity=0.480 Sum_probs=62.9
Q ss_pred CCCccHHHHHHHHhHCCCCeEEEEcCCCCHHH--HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCC
Q 022443 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (297)
Q Consensus 94 ~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~--~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~ 162 (297)
..||||+++|++|.++||+|+.+.+|+.++++ +++||.|+||+|+++|..++||.+|++||++++..+.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCCC
Confidence 46999999999999999999999999877655 4599999999999999999999999999999997653
No 31
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.64 E-value=1.1e-15 Score=109.09 Aligned_cols=71 Identities=30% Similarity=0.463 Sum_probs=63.3
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HH-HHhcCC-ccccEEEECCeEeechHHHHHHHHhhc
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KE-IKWSEY-KKVPILMVDGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~-~~~~p~-~~vP~l~~~g~~l~eS~~I~~yL~~~~ 158 (297)
|+||+++.||+|++++++|+++|++|+.+.++...+ ++ .+++|. ++||+|+++|..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 589999999999999999999999999999886544 33 458995 999999999999999999999999864
No 32
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.63 E-value=8.6e-16 Score=109.37 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=60.7
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCC---CH-HH-HHhcCCccccEEEECCeEeechHHHHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI---NK-KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~---~~-~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
++||+++.||+|++|+++|+++|++|+.+.++.. .+ ++ .++||.++||+|++||..++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998753 22 33 459999999999999999999999999985
No 33
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4e-15 Score=119.48 Aligned_cols=104 Identities=25% Similarity=0.413 Sum_probs=88.0
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH-HHHhcCCccccEEEE-CCeEeechHHHHHHHHhhcCCCCCCC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPKRKAD 165 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~-~~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~~~~~~~~~~~ 165 (297)
++||-|+.||||.|+|+++-.+|||++.+.++..+.+ ...+-|..+||+|+- +|..+.||.+|++|+++..+.+.+.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt- 79 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLT- 79 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhc-
Confidence 5899999999999999999999999999887654433 266889999999995 9999999999999999999876543
Q ss_pred CCCCcHHHHHHHHHHHhhhhhhhhhhhh
Q 022443 166 SPSGDDEEKKWRGWVDNHLVHLLSPNIY 193 (297)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~ 193 (297)
.+-+.+++.|.+-+...+...+.|.+.
T Consensus 80 -~~~~pai~~wlrkv~~y~nkll~PR~~ 106 (215)
T COG2999 80 -GKVRPAIEAWLRKVNGYLNKLLLPRFA 106 (215)
T ss_pred -cCcCHHHHHHHHHhcchHhhhhhhhHh
Confidence 334788999999998888888777654
No 34
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.62 E-value=4.8e-15 Score=125.75 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=66.7
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH---HH--HHhcCCccccEEEECCeEeechHHHHHHHHhhcCCC
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK---KE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~---~~--~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~ 161 (297)
.++||..++|-.++|||+++.|+||+|+...|++... +. +.+||.+.||||+++..+|.|+.-|++|+++++-+.
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 3999999999999999999999999999999986443 22 349999999999999999999999999999998653
No 35
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.62 E-value=1.6e-15 Score=108.03 Aligned_cols=69 Identities=29% Similarity=0.367 Sum_probs=61.6
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEECCeEeechHHHHHHHHh
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~ 156 (297)
++||+++.||+|++++++|+++|++|+.+.++... .++ .+.||.++||+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999987533 234 4599999999999999999999999999974
No 36
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.61 E-value=2.9e-15 Score=107.19 Aligned_cols=68 Identities=38% Similarity=0.634 Sum_probs=62.2
Q ss_pred eEEEEEeC-------CCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcC
Q 022443 87 EVVLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (297)
Q Consensus 87 ~~~Ly~~~-------~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~ 159 (297)
+++||+++ .||+|.||+++|+++|++|+.++++.. +.+|.++||+|+++|+.+.||.+|++||+++|+
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----KRSPKGKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----cCCCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 47999998 589999999999999999999988753 468999999999999999999999999999875
No 37
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.61 E-value=2.5e-15 Score=106.36 Aligned_cols=66 Identities=27% Similarity=0.468 Sum_probs=59.7
Q ss_pred EEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HH-HHhcCCccccEEEE-CCeEeechHHHHHHH
Q 022443 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQL 154 (297)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~-~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL 154 (297)
+||+++.||||+|++++|+++|++|+.+.++...+ ++ .+.||.++||+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 79999999999999999999999999999986544 34 45999999999998 599999999999996
No 38
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.59 E-value=6.2e-15 Score=105.67 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=63.1
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH----HH-HHhcCCccccEEEECCeEeechHHHHHHHHhhc
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~----~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~ 158 (297)
++||+++.|++|++++++|+++|++|+.+.++.... ++ .+.||.++||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 479999999999999999999999999999875332 23 458999999999999999999999999999875
No 39
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.58 E-value=1.2e-14 Score=105.53 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=63.2
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCC---C-HHH-HHhcCCccccEEEEC---CeEeechHHHHHHHHhhc
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI---N-KKE-IKWSEYKKVPILMVD---GEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~---~-~~~-~~~~p~~~vP~l~~~---g~~l~eS~~I~~yL~~~~ 158 (297)
+++||+++. |+|++++++|+++|++|+.+.++.. . .++ .++||.++||+|+++ |..|+||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 479999986 9999999999999999999988743 1 233 459999999999997 899999999999999998
Q ss_pred C
Q 022443 159 T 159 (297)
Q Consensus 159 ~ 159 (297)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 40
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.58 E-value=8.5e-15 Score=104.85 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=62.2
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEECCeEeechHHHHHHHHhh
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
++||+++.||+|++++++|+++|++|+.+.++... .++ .+.||.++||+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 78999999999999999999999999999887532 233 45999999999999999999999999999863
No 41
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.58 E-value=6.7e-15 Score=104.74 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=62.6
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HHH-HhcCCccccEEEECCeEeechHHHHHHHHhh
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
+++||+++.|++|++++++|+++|++|+.+.++...+ +++ +.||.++||+|+++|..++||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 3799999999999999999999999999999975332 234 4899999999999999999999999999763
No 42
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.57 E-value=4.5e-14 Score=116.72 Aligned_cols=142 Identities=25% Similarity=0.329 Sum_probs=103.0
Q ss_pred CCCccHHHHHHHHhHCCCCeEEEEcCCCCHHH-H-HhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCCCC-CCCCc
Q 022443 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKE-I-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKAD-SPSGD 170 (297)
Q Consensus 94 ~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~-~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~~~-~~~~~ 170 (297)
..||||+++-+.|.++|++|.+..||...+++ + .+.|.+++|+|..||..++||..|.++|+++++.+.++. .+.+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E- 97 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE- 97 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH-
Confidence 35999999999999999999999999887766 3 588999999999999999999999999999999877752 1111
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 022443 171 DEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYE 250 (297)
Q Consensus 171 a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~l~~ 250 (297)
... .. ..+++.+..+.... +.+.-+.....+.+
T Consensus 98 --~as---ag---------------------------------------~diF~kF~~fi~ks---k~~~n~~~e~~Ll~ 130 (221)
T KOG1422|consen 98 --SAS---AG---------------------------------------SDIFAKFSAFIKKS---KDAANDGLEKALLK 130 (221)
T ss_pred --HHh---hH---------------------------------------HHHHHHHHHHHhCc---hhhccchHHHHHHH
Confidence 110 00 01111111110000 01111234456888
Q ss_pred HHHHHHHHhCC---CCcccCCCCChhhHHHHHHHHH
Q 022443 251 AAETWVDALNG---REFLGMCFKYLISSSTCKHLIN 283 (297)
Q Consensus 251 ~l~~~~~~L~~---~~fL~Gd~~T~ADi~l~~~L~~ 283 (297)
.+++++++|.. ++||.||++|.|||.+.+-|.-
T Consensus 131 ~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~ 166 (221)
T KOG1422|consen 131 ELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHH 166 (221)
T ss_pred HHHHHHHHhcCccCCccccCCeeeeehhhhchhHHH
Confidence 88888888874 8999999999999999987654
No 43
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.57 E-value=9.3e-15 Score=103.61 Aligned_cols=68 Identities=34% Similarity=0.566 Sum_probs=60.4
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEECCeEeechHHHHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
++||+++.||+|++++++|+++|++|+.+.++... .++ .+.||.++||+|+++|..+.||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999987532 233 458999999999999999999999999984
No 44
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.56 E-value=8.4e-15 Score=104.01 Aligned_cols=68 Identities=28% Similarity=0.390 Sum_probs=59.7
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEE-CCeEeechHHHHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~ 155 (297)
++||+++.||+|++++++|+++|++|+.+.++... .++ .+.+|.++||+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999887532 233 45899999999995 8889999999999985
No 45
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.55 E-value=1.2e-14 Score=103.10 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=61.2
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH--H-HHhcCCccccEEEECCeEeechHHHHHHHHh
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~--~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~ 156 (297)
++||+++.|++|++||++|+++|++|+.+.++..... + .+.||.++||+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999998864322 2 3489999999999999999999999999974
No 46
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.53 E-value=2.3e-14 Score=104.76 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=57.8
Q ss_pred CCCccHHHHHHHHhHCCCCeEEEEcCCCCHHH----HHhcCCccccEEEEC-CeEeechHHHHHHHHhhcC
Q 022443 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKE----IKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQKLT 159 (297)
Q Consensus 94 ~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~----~~~~p~~~vP~l~~~-g~~l~eS~~I~~yL~~~~~ 159 (297)
..||||+|++++|.++||+|+.+.++....+. ++++|.++||+|+++ |..++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 57999999999999999999999887543322 357999999999998 9999999999999999874
No 47
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.53 E-value=2.1e-14 Score=102.06 Aligned_cols=68 Identities=29% Similarity=0.436 Sum_probs=60.4
Q ss_pred EEEEEeCCCccHHHHHHHHhH--CCCCeEEEEcCCCCH-HH-HHhcCCccccEEEE-CCeEeechHHHHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDY--YDIPYKVVEVNPINK-KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~--~gi~~~~~~v~~~~~-~~-~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~ 155 (297)
++||+++.||+|++++++|++ +|++|+.+.++...+ ++ .+.+|.++||+|++ ||..+.||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 899999999986443 34 46999999999985 8899999999999985
No 48
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.52 E-value=3.8e-14 Score=100.76 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=60.1
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEECCeEeechHHHHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
++||+++.||++++|+++|+++|++|+.+.++... .++ .++||.++||+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 47999999999999999999999999999887432 233 459999999999999999999999999984
No 49
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.51 E-value=7.3e-14 Score=100.32 Aligned_cols=71 Identities=24% Similarity=0.370 Sum_probs=61.6
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEEC-CeEeechHHHHHHHHhhcC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQKLT 159 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~~-g~~l~eS~~I~~yL~~~~~ 159 (297)
++||+++.| +|++|+++|+++|++|+.+.++... .++ .++||.++||+|+++ |..++||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 479999976 5999999999999999999887643 234 458999999999986 8999999999999999875
No 50
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.51 E-value=6.8e-14 Score=99.18 Aligned_cols=68 Identities=31% Similarity=0.447 Sum_probs=60.3
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC----HHH-HHhcCCccccEEEECCeEeechHHHHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~----~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
++||++..|++|++++++|+++|++|+.+.++... .++ .+.+|.++||+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 48999999999999999999999999999887532 233 458999999999999999999999999985
No 51
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.50 E-value=7.9e-14 Score=99.72 Aligned_cols=68 Identities=29% Similarity=0.369 Sum_probs=60.5
Q ss_pred EEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC---HHH-HHhcCCccccEEEE-CCeEeechHHHHHHHHh
Q 022443 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~---~~~-~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~~ 156 (297)
+||+++.||+|++++++|+++|++|+.+.++... .++ .++||.++||+|++ +|..+.||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 7999999999999999999999999999998642 233 45999999999997 59999999999999975
No 52
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.50 E-value=1.1e-13 Score=98.97 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=61.8
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCC---C-HHH-HHhcCCccccEEEECCeEeechHHHHHHHHhhcC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI---N-KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~---~-~~~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~ 159 (297)
++||+++. ++|++++++|+++|++|+.+.++.. . .++ .+.+|.++||+|+++|..++||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47998886 6899999999999999999998853 2 233 4589999999999999999999999999999874
No 53
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.50 E-value=9.3e-14 Score=98.48 Aligned_cols=65 Identities=38% Similarity=0.596 Sum_probs=58.7
Q ss_pred EEEEEeC-------CCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhh
Q 022443 88 VVLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 88 ~~Ly~~~-------~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
++||.++ .||+|++++++|+++||+|+.++++... ++|.++||+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-----RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-----cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3677777 8999999999999999999999998643 689999999999999999999999999874
No 54
>PLN02907 glutamate-tRNA ligase
Probab=99.49 E-value=3e-13 Score=133.97 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=97.3
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEE-CCeEeechHHHHHHHHhhcCCCCCC-C
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPKRKA-D 165 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~~~~~~~~~~-~ 165 (297)
++||+.+.++ +.++.++|++.|++|+.++. +|.++||+|++ +|..|+||.+|++||++.++...+. .
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~~----------~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~ 71 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDPS----------LKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQ 71 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEeec----------CCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCC
Confidence 7899888765 77899999999999998762 58999999995 8899999999999999999765443 3
Q ss_pred CCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHH
Q 022443 166 SPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDER 245 (297)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 245 (297)
++.+++++.+|+.|.+... . .
T Consensus 72 d~~erAqV~qWL~~~~~~~---------------------------------------------~--~------------ 92 (722)
T PLN02907 72 DAFESSQVDEWLDYAPTFS---------------------------------------------S--G------------ 92 (722)
T ss_pred CHHHHHHHHHHHHHHhhcc---------------------------------------------c--H------------
Confidence 4445677778877754210 0 0
Q ss_pred HHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 246 AALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 246 ~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
.++...++.++++|++++||+|+++|+|||++++.+...
T Consensus 93 ~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~ 131 (722)
T PLN02907 93 SEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGS 131 (722)
T ss_pred HHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhh
Confidence 012234555556888899999999999999999887543
No 55
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.48 E-value=2.2e-13 Score=98.41 Aligned_cols=72 Identities=18% Similarity=0.335 Sum_probs=61.2
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HHHH---hcCCccccEEEECCeEeechHHHHHHHHhhcC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIK---WSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~---~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~ 159 (297)
++||+++.++.|++++++|+++|++|+.+.++.... .... ..+.++||+|++||..++||.+|++||.++++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 589999999999999999999999999998875221 1111 23589999999999999999999999999986
No 56
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.48 E-value=8.7e-14 Score=98.16 Aligned_cols=63 Identities=30% Similarity=0.517 Sum_probs=52.3
Q ss_pred CCccHHHHHHHHhHCCCCeEEEEcCC----CCH-HH-HHhcCCccccEEEE-CCeEeechHHHHHHHHhh
Q 022443 95 ACPFCNKVKAFLDYYDIPYKVVEVNP----INK-KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 95 ~sp~~~~vr~~L~~~gi~~~~~~v~~----~~~-~~-~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~~~ 157 (297)
+||||+|++++|+++|++|+...++. ..+ ++ .+.||.++||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999887732 222 23 45999999999998 899999999999999974
No 57
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.47 E-value=1.6e-13 Score=95.56 Aligned_cols=68 Identities=29% Similarity=0.453 Sum_probs=60.3
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH--H-HHhcCCccccEEEECCeEeechHHHHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~--~-~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
++||+++.||+|++++++|+++|++|+.+.++..... + .+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998754322 2 347899999999999999999999999984
No 58
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.47 E-value=2.5e-13 Score=98.86 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=60.4
Q ss_pred EEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC-----HHHHH------hcCCccccEEEECCeEeechHHHHHHHHhh
Q 022443 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-----KKEIK------WSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~-----~~~~~------~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
+||++..++.|++++++|+++||+|+.+.++... .+++. ..|.++||+|++||..++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 7899999999999999999999999999988543 12321 229999999999999999999999999986
Q ss_pred c
Q 022443 158 L 158 (297)
Q Consensus 158 ~ 158 (297)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 59
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.46 E-value=4.4e-13 Score=96.88 Aligned_cols=73 Identities=22% Similarity=0.442 Sum_probs=63.9
Q ss_pred CCCCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HHHH-hcCCccccEEEECCeEeechHHHHHHHH
Q 022443 83 LVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 83 ~~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~-~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
..+++++||+.++||+|.+++.+|+.+||+|+.++++.... .++. .++..+||++++||+.++++.+|.+||.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 34678999999999999999999999999999999975433 2343 6799999999999999999999999984
No 60
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=9.6e-12 Score=102.41 Aligned_cols=185 Identities=14% Similarity=0.171 Sum_probs=126.9
Q ss_pred ccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCCCCCCCCcHHHHHH
Q 022443 97 PFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSGDDEEKKW 176 (297)
Q Consensus 97 p~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~~a~~~~~ 176 (297)
.-|..|+.+|+..++||.++..+..+ .++|.|+||.|..+.+.+.|-.+|+.+.+.+...-....+..++++++..
T Consensus 35 ascLAVqtfLrMcnLPf~v~~~~Nae----fmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra~ 110 (257)
T KOG3027|consen 35 ASCLAVQTFLRMCNLPFNVRQRANAE----FMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRAY 110 (257)
T ss_pred hhHHHHHHHHHHcCCCceeeecCCcc----ccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 35999999999999999998776432 25899999999999999999999999999887543333444568999999
Q ss_pred HHHHHhhhhhhhhhhhhcCchhHhhhhhccccc---CCCCchHHHHHHHhhHHHHHHHHHHHHh----hcCCcHHHHHHH
Q 022443 177 RGWVDNHLVHLLSPNIYRNTSEALESFDYITSS---GNFSFTEKLTAKYAGAAAMYFVSKKLKK----KYNITDERAALY 249 (297)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~~~~~~l~ 249 (297)
++++++.|...-.+..|.+-. +++.++.. ..+++.-.-+.++... +...+.++. ...++...+++.
T Consensus 111 vslVen~~t~aEl~~s~~de~----ty~~vT~~R~gs~ypWPLs~i~~f~Kr---r~~~r~lk~~~W~~~~~DqVie~vd 183 (257)
T KOG3027|consen 111 VSLVENLLTTAELYVSWNDEE----TYDEVTALRYGSVYPWPLSHILPFVKR---RKALRELKVYDWDDKTMDQVIEQVD 183 (257)
T ss_pred HHHHHHHHHHHHHHHHhccHH----HHHHHhhhccCCCCCCcHHHHHHHHHH---HHHHHHHhhcCcccccHHHHHHHHH
Confidence 999998776665555553211 11112111 1122111111111110 011111111 123456777888
Q ss_pred HHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHhhcCCCc
Q 022443 250 EAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVHNLSTNK 292 (297)
Q Consensus 250 ~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~ 292 (297)
+..+.+...|+.++||.|++||-+|..+|+++..++-.-.+|-
T Consensus 184 kc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ 226 (257)
T KOG3027|consen 184 KCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNM 226 (257)
T ss_pred HHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcH
Confidence 8888888899999999999999999999999999887766653
No 61
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.39 E-value=2.9e-12 Score=91.87 Aligned_cols=68 Identities=25% Similarity=0.305 Sum_probs=55.0
Q ss_pred EEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH----HH-HHhcCC-ccccEEEEC-CeEeechHHHHHHHHh
Q 022443 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEY-KKVPILMVD-GEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~----~~-~~~~p~-~~vP~l~~~-g~~l~eS~~I~~yL~~ 156 (297)
+|+.|...+++.++|++|+++|++|+.+.++.... ++ .+.+|. |+||+|+++ |..++||.+|++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 44555555599999999999999999999875322 44 459999 999999998 9999999999999975
No 62
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.34 E-value=5.3e-12 Score=89.75 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=55.8
Q ss_pred EeCCCccHHHHHHHHhHCCCCeEEEEcCCCC---HHHH-HhcCCccccEEEECCeEeechHHHHHHHH
Q 022443 92 QYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 92 ~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
....||+|++++++|+++|++|+.+.++... .+++ +.||.++||+|+++|..++||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 3567999999999999999999999887643 2344 59999999999999999999999999984
No 63
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.34 E-value=7.3e-12 Score=88.71 Aligned_cols=69 Identities=25% Similarity=0.472 Sum_probs=60.9
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HHHH-hcCCccccEEEECCeEeechHHHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~-~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
+++||+.++||||.+++.+|+..|++|+.++++.... ..+. .++..+||+|++||+.++++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 6899999999999999999999999999999975432 2343 6789999999999999999999999984
No 64
>PRK10638 glutaredoxin 3; Provisional
Probab=99.26 E-value=3.7e-11 Score=87.56 Aligned_cols=69 Identities=22% Similarity=0.509 Sum_probs=60.9
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHH-HhcCCccccEEEECCeEeechHHHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
.++||+.++||||.+++.+|+++|++|+.++++... ..++ +.+|..+||+|++||+.+++..++..+-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 699999999999999999999999999999997543 2334 48899999999999999999999988744
No 65
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.1e-10 Score=99.63 Aligned_cols=189 Identities=15% Similarity=0.104 Sum_probs=127.4
Q ss_pred CCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEE-CCeEeechHHHHHHHHhhcCCCC--CCCCCCCcH
Q 022443 95 ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPKR--KADSPSGDD 171 (297)
Q Consensus 95 ~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~~~~~~~~--~~~~~~~~a 171 (297)
.|+-|..+.++++..+-|.+++..+...+ +|.|++|+|+. +|..+.+-.-|+.+|...-.... ......+.+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~~-----s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a 90 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPWR-----SPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLA 90 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCCC-----CCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHH
Confidence 38999999999999996666666553322 78999999997 67999999999999998422211 112245678
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcCchhHhh-hhhcccccCCCCchHHHHHHHhhHHHHHHHHHH-H--HhhcC---CcHH
Q 022443 172 EEKKWRGWVDNHLVHLLSPNIYRNTSEALE-SFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKK-L--KKKYN---ITDE 244 (297)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~~---i~~~ 244 (297)
....|+.++++.+...+.+.+|....+..+ +..|+.+.-.|+-. +.-...+...++. . ..... -++.
T Consensus 91 ~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n------~~~p~~l~~qAk~rl~l~~g~~~~~e~~i 164 (313)
T KOG3028|consen 91 DTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLN------YILPGKLQRQAKERLQLTLGELTEREDQI 164 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchh------hcchhhhHHHHHHHHHHHhCCchhhHHHH
Confidence 999999999999999999999865544333 34444443333321 1100000000110 0 00111 1133
Q ss_pred HHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHhhcCCCccc
Q 022443 245 RAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVHNLSTNKSI 294 (297)
Q Consensus 245 ~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~ 294 (297)
..+-.++++.+.+.|++++|++||+||--|+.+|++++.++...-++.++
T Consensus 165 ~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~L 214 (313)
T KOG3028|consen 165 YKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSL 214 (313)
T ss_pred HHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhH
Confidence 44556777766668999999999999999999999999988777766654
No 66
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.21 E-value=4.9e-11 Score=84.42 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=50.4
Q ss_pred CCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhh
Q 022443 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 94 ~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
+.+++|.|++++|++.|+||+.+..... -..+|.|+||+|++||.+++||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~----~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANA----EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCc----cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 3467899999999999999999854321 12578899999999999999999999999864
No 67
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.19 E-value=1.2e-10 Score=87.70 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=62.2
Q ss_pred CCCCCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-H----HH-HhcCCccccEEEECCeEeechHHHHHHH
Q 022443 82 DLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-K----EI-KWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (297)
Q Consensus 82 ~~~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~----~~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL 154 (297)
.+.++++++|+.++||||.+++.+|+.+|++|+.+++|.... . .+ +.++..+||+|+++|+.+++.+++....
T Consensus 4 ~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 4 MVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred hhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 345688999999999999999999999999999999985422 1 23 3678999999999999999999998853
No 68
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.17 E-value=2e-10 Score=81.51 Aligned_cols=67 Identities=19% Similarity=0.396 Sum_probs=58.4
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHH-HhcCCccccEEEECCeEeechHHHHH
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIID 152 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~g~~l~eS~~I~~ 152 (297)
++++||+.++||+|++++.+|+++||+|+.++++... ..++ +++|..++|++++||+.+++-.++.+
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 3689999999999999999999999999999987433 3344 48899999999999999999888766
No 69
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.4e-10 Score=82.57 Aligned_cols=70 Identities=21% Similarity=0.505 Sum_probs=59.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH---H-HH-hcCCccccEEEECCeEeechHHHHHHHHh
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK---E-IK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~---~-~~-~~p~~~vP~l~~~g~~l~eS~~I~~yL~~ 156 (297)
.+++|+.++||||.+++.+|..+|++|+.++++..... + ++ .+|..+||+|++||++++.+.++.++...
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 58999999999999999999999999999999865521 2 44 55899999999999999988887776543
No 70
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.5e-10 Score=99.68 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=106.1
Q ss_pred CCCeEEEEEeCCCccHHHHHHHHhHCCCCeEE--EEcC-----------CC---------CH-H---HH------HhcCC
Q 022443 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKV--VEVN-----------PI---------NK-K---EI------KWSEY 131 (297)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~--~~v~-----------~~---------~~-~---~~------~~~p~ 131 (297)
.++.+.||..-.||++.|..++-+.||++-.. ..++ +. .. + ++ .-+++
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 46889999999999999999999999986321 1111 11 00 0 01 14577
Q ss_pred ccccEEEE--CCe-EeechHHHHHHHHhhcCC---CCCCCCCC-CcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhh
Q 022443 132 KKVPILMV--DGE-QLVDSSAIIDQLDQKLTP---KRKADSPS-GDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFD 204 (297)
Q Consensus 132 ~~vP~l~~--~g~-~l~eS~~I~~yL~~~~~~---~~~~~~~~-~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 204 (297)
-+||+|.| ..+ +-.||.+|++.+...+.+ .....-|+ -+.++..+.+|+-.. +...+|+..
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~----vNNGVYk~G-------- 195 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDT----VNNGVYKAG-------- 195 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhccc----ccCceeeec--------
Confidence 99999999 333 346999999999876653 11112221 256666666665443 333344211
Q ss_pred cccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 205 YITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
|... .+.-+++..++.+.|+.+++.|+++.||+||++|.||+-+|+.|.++
T Consensus 196 -------FA~t----------------------q~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRF 246 (324)
T COG0435 196 -------FATT----------------------QEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRF 246 (324)
T ss_pred -------ccch----------------------HHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEee
Confidence 1100 00123566889999998888999999999999999999999988775
No 71
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.14 E-value=3.5e-10 Score=82.98 Aligned_cols=72 Identities=15% Similarity=0.457 Sum_probs=59.5
Q ss_pred EEEEEeCCCccHHHHHHHHhHCC-----CCeEEEEcCCCC--HHHHH-hcCC--ccccEEEECCeEeechHHHHHHHHhh
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYD-----IPYKVVEVNPIN--KKEIK-WSEY--KKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~g-----i~~~~~~v~~~~--~~~~~-~~p~--~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
+++|+.++||||.+++.+|+.++ ++|+.++++... +.++. ..+. .+||+|++||+.++++.+|..|+.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 68999999999999999999984 678888876332 33343 4454 79999999999999999999999987
Q ss_pred cC
Q 022443 158 LT 159 (297)
Q Consensus 158 ~~ 159 (297)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 65
No 72
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.11 E-value=3.7e-10 Score=84.78 Aligned_cols=73 Identities=26% Similarity=0.471 Sum_probs=61.3
Q ss_pred CCCCeEEEEEe-----CCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hcCCccccEEEECCeEeechHHHHHHH
Q 022443 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (297)
Q Consensus 83 ~~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~p~~~vP~l~~~g~~l~eS~~I~~yL 154 (297)
+.++++++|.. ++||||.+++.+|+.+||+|+.++++... ..++. +++..+||.+++||+.+++.+++....
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 44678999987 88999999999999999999999986322 22343 788999999999999999999998864
Q ss_pred H
Q 022443 155 D 155 (297)
Q Consensus 155 ~ 155 (297)
.
T Consensus 89 ~ 89 (97)
T TIGR00365 89 Q 89 (97)
T ss_pred H
Confidence 4
No 73
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.10 E-value=7.3e-10 Score=81.05 Aligned_cols=73 Identities=21% Similarity=0.459 Sum_probs=62.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhH-----CCCCeEEEEcCCCC--HHHHH-hcCC--ccccEEEECCeEeechHHHHHHHHh
Q 022443 87 EVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPIN--KKEIK-WSEY--KKVPILMVDGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~-----~gi~~~~~~v~~~~--~~~~~-~~p~--~~vP~l~~~g~~l~eS~~I~~yL~~ 156 (297)
.+++|+.++||+|.+++.+|++ .|++|+.++++... ..++. ..+. .+||+|++||+.+++..+|.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 5899999999999999999999 89999999987432 33443 4443 7899999999999999999999998
Q ss_pred hcC
Q 022443 157 KLT 159 (297)
Q Consensus 157 ~~~ 159 (297)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 875
No 74
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.2e-10 Score=99.38 Aligned_cols=161 Identities=22% Similarity=0.278 Sum_probs=106.0
Q ss_pred CCCCeEEEEEeCCCccHHHHHHHHhHCCCCe----EEEEc--C------------------------CCC--H--HHH-H
Q 022443 83 LVPKEVVLYQYEACPFCNKVKAFLDYYDIPY----KVVEV--N------------------------PIN--K--KEI-K 127 (297)
Q Consensus 83 ~~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~----~~~~v--~------------------------~~~--~--~~~-~ 127 (297)
...+.+.||..-.|||+.|..++++.+|++- .++.- + +.. + .++ .
T Consensus 33 pakgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~ 112 (319)
T KOG2903|consen 33 PAKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYY 112 (319)
T ss_pred CCCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHh
Confidence 3448999999999999999999999999752 22211 0 000 0 011 1
Q ss_pred -----hcCCccccEEEE---CCeEeechHHHHHHHHhhcCC-------CCCCCCC-CCcHHHHHHHHHHHhhhhhhhhhh
Q 022443 128 -----WSEYKKVPILMV---DGEQLVDSSAIIDQLDQKLTP-------KRKADSP-SGDDEEKKWRGWVDNHLVHLLSPN 191 (297)
Q Consensus 128 -----~~p~~~vP~l~~---~g~~l~eS~~I~~yL~~~~~~-------~~~~~~~-~~~a~~~~~~~~~~~~l~~~~~~~ 191 (297)
-.++-+||+|-| ...+-.||.+|++.+...+.+ +.+.+.| .-++++..|.+|+-+.+..-
T Consensus 113 ~~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNG---- 188 (319)
T KOG2903|consen 113 IASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNG---- 188 (319)
T ss_pred hcCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCc----
Confidence 336789999998 344567999999999844322 1111222 22577777777765544333
Q ss_pred hhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCCCC--cccCCC
Q 022443 192 IYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALNGRE--FLGMCF 269 (297)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~L~~~~--fL~Gd~ 269 (297)
+|+. .|. + +.+.-+.+..++.+.|+++++.|+++. |++||+
T Consensus 189 VYk~---------------GFA-------------------~---~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~ 231 (319)
T KOG2903|consen 189 VYKC---------------GFA-------------------E---KQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDT 231 (319)
T ss_pred eeee---------------ccc-------------------c---ccchHHHHHHHHHHHHHHHHHHHhcccceEeeccc
Confidence 3311 010 0 011223567889999999999999876 999999
Q ss_pred CChhhHHHHHHHHHH
Q 022443 270 KYLISSSTCKHLINF 284 (297)
Q Consensus 270 ~T~ADi~l~~~L~~l 284 (297)
+|.||+.||+.+.++
T Consensus 232 LTeaDirLy~TiIRF 246 (319)
T KOG2903|consen 232 LTEADIRLYTTIIRF 246 (319)
T ss_pred cchhheeeeeeEEee
Confidence 999999999887664
No 75
>PHA03050 glutaredoxin; Provisional
Probab=99.10 E-value=4.3e-10 Score=85.96 Aligned_cols=71 Identities=17% Similarity=0.472 Sum_probs=60.5
Q ss_pred CCCCeEEEEEeCCCccHHHHHHHHhHCCC---CeEEEEcCCC--C---HHHH-HhcCCccccEEEECCeEeechHHHHHH
Q 022443 83 LVPKEVVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPI--N---KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQ 153 (297)
Q Consensus 83 ~~~~~~~Ly~~~~sp~~~~vr~~L~~~gi---~~~~~~v~~~--~---~~~~-~~~p~~~vP~l~~~g~~l~eS~~I~~y 153 (297)
+..+++++|+.++||||.+++-+|+++|+ +|++++++.. . ..++ +.++..+||+|+++|+++++.+++...
T Consensus 10 i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l 89 (108)
T PHA03050 10 LANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEI 89 (108)
T ss_pred hccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHH
Confidence 44678999999999999999999999999 8999999742 1 2234 378999999999999999999999883
No 76
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.07 E-value=9.6e-10 Score=78.20 Aligned_cols=69 Identities=22% Similarity=0.465 Sum_probs=57.9
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHH-HhcCCc-cccEEEECCeEeechHHHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYK-KVPILMVDGEQLVDSSAIIDQLD 155 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~-~vP~l~~~g~~l~eS~~I~~yL~ 155 (297)
+++||+.++||+|.+++.+|+++||+|+.++++... ..++ ...+.. +||+++++|+.+++..++.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 389999999999999999999999999999997542 2223 345555 99999999999999999998754
No 77
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.06 E-value=8.3e-10 Score=78.33 Aligned_cols=58 Identities=31% Similarity=0.455 Sum_probs=51.0
Q ss_pred CCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhh
Q 022443 95 ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 95 ~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
.||+|.++.++|+..|+||+++..+... .+|.|++|+|+++|+.+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n~~-----~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNNPW-----RSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCCCC-----CCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 4799999999999999999988654322 378999999999999999999999999875
No 78
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.03 E-value=1.7e-09 Score=75.55 Aligned_cols=67 Identities=22% Similarity=0.565 Sum_probs=58.4
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hcCCccccEEEECCeEeechHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQ 153 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~p~~~vP~l~~~g~~l~eS~~I~~y 153 (297)
++++|+.++||+|++++.+|+.++++|+.++++... +.++. .++..++|+++++|..++++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 479999999999999999999999999999887543 33444 78999999999999999999998874
No 79
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.02 E-value=2.2e-09 Score=79.48 Aligned_cols=73 Identities=19% Similarity=0.412 Sum_probs=61.5
Q ss_pred CCCCeEEEEEe-----CCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHH-HhcCCccccEEEECCeEeechHHHHHHH
Q 022443 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (297)
Q Consensus 83 ~~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL 154 (297)
+..+++++|.. ++||||.+++.+|+.+|++|+.++++... ..++ +.++..+||+|++||+.+++..++....
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 44678999988 69999999999999999999999986432 2234 4789999999999999999999999864
Q ss_pred H
Q 022443 155 D 155 (297)
Q Consensus 155 ~ 155 (297)
.
T Consensus 85 ~ 85 (90)
T cd03028 85 E 85 (90)
T ss_pred H
Confidence 3
No 80
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.99 E-value=2.2e-09 Score=77.79 Aligned_cols=60 Identities=10% Similarity=0.442 Sum_probs=50.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH--HHHHhcCCccccEEEECCeEeec
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEIKWSEYKKVPILMVDGEQLVD 146 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~--~~~~~~p~~~vP~l~~~g~~l~e 146 (297)
+++||+.++||+|.+++.+|+++||+|+.++++.... .++...|..+||+++++|..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEec
Confidence 5899999999999999999999999999999974332 22455799999999998876653
No 81
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.98 E-value=3e-09 Score=76.55 Aligned_cols=69 Identities=19% Similarity=0.435 Sum_probs=59.5
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHH-HhcCCccccEEEECCeEeechHHHHHHHHh
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~ 156 (297)
|++|+.++||+|.+++.+|+++|++|+.++++... ..++ ..++..+||+++++|+.+++..++..+.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 58999999999999999999999999999997543 2334 367899999999999999999999887654
No 82
>PRK10824 glutaredoxin-4; Provisional
Probab=98.97 E-value=3.2e-09 Score=81.64 Aligned_cols=74 Identities=19% Similarity=0.395 Sum_probs=62.0
Q ss_pred CCCCCeEEEEEe-----CCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hcCCccccEEEECCeEeechHHHHHH
Q 022443 82 DLVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQ 153 (297)
Q Consensus 82 ~~~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~p~~~vP~l~~~g~~l~eS~~I~~y 153 (297)
.+..++|++|.. ++||||.+++.+|..+|++|+.++++... +..+. .++..+||.|+++|+++++++++...
T Consensus 11 ~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 11 QIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred HHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 345788999998 49999999999999999999999886432 22343 78999999999999999999999886
Q ss_pred HH
Q 022443 154 LD 155 (297)
Q Consensus 154 L~ 155 (297)
..
T Consensus 91 ~~ 92 (115)
T PRK10824 91 YQ 92 (115)
T ss_pred HH
Confidence 43
No 83
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.6e-09 Score=79.23 Aligned_cols=73 Identities=23% Similarity=0.489 Sum_probs=63.5
Q ss_pred CCCCCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHH-H----H-HhcCCccccEEEECCeEeechHHHHHHH
Q 022443 82 DLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E----I-KWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (297)
Q Consensus 82 ~~~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~-~----~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL 154 (297)
.+..+++++|+..+||||.+++.+|...++++.++++|..... + + ++++..+||.++++|+.++++.+++.+-
T Consensus 10 ~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 10 MISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred HhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 3456889999999999999999999999999999999865432 3 2 3788999999999999999999999864
No 84
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.91 E-value=4.1e-09 Score=71.71 Aligned_cols=57 Identities=40% Similarity=0.816 Sum_probs=49.6
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hcCCccccEEEECCeEe
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQL 144 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~p~~~vP~l~~~g~~l 144 (297)
+++|+.++||+|.+++.+|+.+|++|+.++++... ++++. ..+..++|++++||+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 68999999999999999999999999999998653 33444 66999999999999875
No 85
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.90 E-value=9.2e-09 Score=72.25 Aligned_cols=68 Identities=24% Similarity=0.470 Sum_probs=55.8
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH--HH-HHhcCCccccEEEECCeEe--echHHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KE-IKWSEYKKVPILMVDGEQL--VDSSAIIDQL 154 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~--~~-~~~~p~~~vP~l~~~g~~l--~eS~~I~~yL 154 (297)
+++||+.++||+|++++.+|+++|++|+.++++.... .+ .+.++...||+|+++|+.+ .+...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 4899999999999999999999999999998875432 22 3578999999999999887 5666666655
No 86
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.90 E-value=9.8e-09 Score=74.18 Aligned_cols=70 Identities=19% Similarity=0.448 Sum_probs=60.6
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-H----HH-HhcCCccccEEEECCeEeechHHHHHHHHh
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-K----EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~----~~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~ 156 (297)
++++|+.++||+|.+++.+|++.+++|+.++++.... . .+ +.++..++|+++++|..+++..+|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4899999999999999999999999999998875432 1 23 367889999999999999999999998765
No 87
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.86 E-value=9.3e-09 Score=72.70 Aligned_cols=55 Identities=20% Similarity=0.543 Sum_probs=46.4
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH--HHHHhcCCccccEEEECCe
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEIKWSEYKKVPILMVDGE 142 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~--~~~~~~p~~~vP~l~~~g~ 142 (297)
++||+.++||+|.+++.+|+++||+|+.++++.... .++...+..+||+++++|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 589999999999999999999999999999974332 2355568889999999765
No 88
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.80 E-value=2.8e-08 Score=71.97 Aligned_cols=69 Identities=25% Similarity=0.602 Sum_probs=58.6
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCC--eEEEEcCCCCH-HH----H-HhcCCccccEEEECCeEeechHHHHHHHHh
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIP--YKVVEVNPINK-KE----I-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~--~~~~~v~~~~~-~~----~-~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~ 156 (297)
+++|+.++||+|.+++-+|+..+++ |+.++++.... .+ + +.++..++|+++.+|..++++.++.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5799999999999999999999999 99998875432 21 3 366888999999999999999999988654
No 89
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.75 E-value=4.9e-08 Score=68.36 Aligned_cols=62 Identities=34% Similarity=0.720 Sum_probs=51.8
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH--HHH-HhcCCccccEEEECCeEeechH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEI-KWSEYKKVPILMVDGEQLVDSS 148 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~--~~~-~~~p~~~vP~l~~~g~~l~eS~ 148 (297)
.+++|+.++||+|.+++.+|+++|++|+.++++.... .++ +.++.++||+|+++|..+.+..
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~ 65 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFR 65 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCC
Confidence 3799999999999999999999999999999975432 233 3779999999999998776543
No 90
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.68 E-value=1.3e-07 Score=67.17 Aligned_cols=69 Identities=19% Similarity=0.405 Sum_probs=53.4
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH--HHH-Hhc-CCccccEEEE-CCeEeec--hHHHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEI-KWS-EYKKVPILMV-DGEQLVD--SSAIIDQLD 155 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~--~~~-~~~-p~~~vP~l~~-~g~~l~e--S~~I~~yL~ 155 (297)
.++||+.++||+|++++.+|+++|++|+.++++.... ..+ .++ +..+||+|+. +|..+.+ +..|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 3799999999999999999999999999998874432 223 365 8999999975 7777664 445555553
No 91
>PTZ00062 glutaredoxin; Provisional
Probab=98.55 E-value=3.7e-07 Score=77.51 Aligned_cols=74 Identities=20% Similarity=0.372 Sum_probs=61.9
Q ss_pred CCCCCCeEEEEEe-----CCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHH-HhcCCccccEEEECCeEeechHHHHH
Q 022443 81 TDLVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEI-KWSEYKKVPILMVDGEQLVDSSAIID 152 (297)
Q Consensus 81 ~~~~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~g~~l~eS~~I~~ 152 (297)
..+..++++||.. +.||||.+++.+|+..||+|+.++++... +..+ +.++..+||.|+++|+.+++.+.+.+
T Consensus 108 ~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 108 RLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred HHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 4456789999988 58999999999999999999999887432 2234 37889999999999999999998888
Q ss_pred HH
Q 022443 153 QL 154 (297)
Q Consensus 153 yL 154 (297)
..
T Consensus 188 l~ 189 (204)
T PTZ00062 188 LY 189 (204)
T ss_pred HH
Confidence 54
No 92
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.49 E-value=8.8e-07 Score=71.28 Aligned_cols=68 Identities=24% Similarity=0.421 Sum_probs=57.1
Q ss_pred eEEEEEeC------CCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hcC----CccccEEEECCeEeechHHHHHH
Q 022443 87 EVVLYQYE------ACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSE----YKKVPILMVDGEQLVDSSAIIDQ 153 (297)
Q Consensus 87 ~~~Ly~~~------~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~p----~~~vP~l~~~g~~l~eS~~I~~y 153 (297)
.|+||..+ .||+|.+|+.+|+.++|+|++++++... ++++. ..+ ..+||.|+++|+.|++..++.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 37899998 8999999999999999999999997542 34454 333 48999999999999999999885
Q ss_pred H
Q 022443 154 L 154 (297)
Q Consensus 154 L 154 (297)
-
T Consensus 81 ~ 81 (147)
T cd03031 81 N 81 (147)
T ss_pred H
Confidence 3
No 93
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.41 E-value=5.8e-07 Score=69.51 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=59.4
Q ss_pred CCCCcHHHHHHHHHHHhhhhhhhhhhhhcCchhHhhhhhcccccCCCCchHHHHHHHhhHHHHHHHHHHHHhhcCCcHHH
Q 022443 166 SPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDER 245 (297)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 245 (297)
+|..++++.+|+.|.+..+.+.+...++... ..+ ...+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~-----~~~~~~~ 43 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADR----------------------------------YPE-----ESEEEYR 43 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhh----------------------------------cCc-----ccHHHHH
Confidence 4667899999999999988887766554210 000 0123345
Q ss_pred HHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 246 AALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 246 ~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
+++.+.++.+++.|++++|++||++|+|||++++.+..+.
T Consensus 44 ~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~~ 83 (115)
T cd03196 44 QQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQFA 83 (115)
T ss_pred HHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHHH
Confidence 6777888877778988899999999999999998876543
No 94
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.39 E-value=1.2e-06 Score=82.50 Aligned_cols=66 Identities=24% Similarity=0.519 Sum_probs=56.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCH-HHH-H---------hcCCccccEEEECCeEeechHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEI-K---------WSEYKKVPILMVDGEQLVDSSAIID 152 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~-~---------~~p~~~vP~l~~~g~~l~eS~~I~~ 152 (297)
.|++|+.++||+|.+++.+|+.+||+|+.++++.... .++ . .++..+||++++||+++++.+++..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 6999999999999999999999999999999984322 121 1 2478899999999999999999977
No 95
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.38 E-value=7.9e-07 Score=67.96 Aligned_cols=42 Identities=14% Similarity=-0.102 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
...+.+.+.++.+++.|++++||+||++|+|||++++.+..+
T Consensus 43 ~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~~~~ 84 (114)
T cd03188 43 AARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVLRWA 84 (114)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHHHHH
Confidence 345667888887778888889999999999999999877644
No 96
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.37 E-value=1.2e-06 Score=66.46 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
.....+.+.+..+++.|++++|++||++|+|||++++.+..+
T Consensus 35 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~ 76 (107)
T cd03186 35 KARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRL 76 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHH
Confidence 345677888887778999999999999999999999987443
No 97
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=98.36 E-value=8.7e-07 Score=61.74 Aligned_cols=46 Identities=22% Similarity=0.082 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHhh
Q 022443 242 TDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVHN 287 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~ 287 (297)
+..++++.+.++.+++.|++++||+||+||+||+++++++.++...
T Consensus 5 ~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~ 50 (69)
T PF13410_consen 5 ERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFV 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3466788888888888999999999999999999999998877655
No 98
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=98.31 E-value=2.9e-06 Score=68.10 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
....++.+.++.+++.|++++|++||++|+|||++++++.++
T Consensus 37 ~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~ 78 (142)
T cd03190 37 EAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRF 78 (142)
T ss_pred HHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHH
Confidence 455678888887778898899999999999999999998776
No 99
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.30 E-value=1.7e-06 Score=66.93 Aligned_cols=43 Identities=9% Similarity=-0.139 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
....++.+.++.+++.|++++||+||++|+|||++++.+..+.
T Consensus 54 ~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~ 96 (119)
T cd03189 54 FINPELKKHLDFLEDRLAKKGYFVGDKLTAADIMMSFPLEAAL 96 (119)
T ss_pred HHhHHHHHHHHHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456788888877779999999999999999999987765543
No 100
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.28 E-value=1.3e-06 Score=66.23 Aligned_cols=43 Identities=16% Similarity=0.013 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
...+++.+.++.+++.|++++|++|+++|+||+++++.+.++.
T Consensus 43 ~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~~~~~ 85 (110)
T cd03180 43 ASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSAYRWF 85 (110)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHHHHH
Confidence 3456788888878888988899999999999999998886654
No 101
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=98.26 E-value=3.6e-06 Score=65.66 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 244 ERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
...++.+.++.+++.|++++|++|+++|+|||++++.+..+
T Consensus 36 ~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~ 76 (126)
T cd03185 36 AKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWF 76 (126)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHH
Confidence 45677788887777888889999999999999999977664
No 102
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.23 E-value=6.5e-06 Score=63.65 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 242 TDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
+...+++.+.++.+++.|++++||+||++|+||+++++.+..+.
T Consensus 37 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~ 80 (118)
T cd03177 37 EEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLE 80 (118)
T ss_pred HHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHH
Confidence 35566788888878888988899999999999999999887664
No 103
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.15 E-value=4.9e-06 Score=64.02 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
...+++...++.+++.|++++|++||++|+|||++++++..+.
T Consensus 45 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~ 87 (118)
T cd03187 45 ENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLPYLQYLM 87 (118)
T ss_pred HHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHHHHHHHH
Confidence 3456778888877778988999999999999999998876654
No 104
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.15 E-value=3.7e-06 Score=64.70 Aligned_cols=42 Identities=10% Similarity=-0.079 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
....++...++.+++.|++++|++||++|+|||++++.+..+
T Consensus 49 ~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aDi~l~~~~~~~ 90 (117)
T cd03182 49 RSKARAADFLAYLDTRLAGSPYVAGDRFTIADITAFVGLDFA 90 (117)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHhHHH
Confidence 455677888887777898889999999999999999887543
No 105
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.14 E-value=2.1e-06 Score=64.61 Aligned_cols=41 Identities=17% Similarity=-0.038 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 244 ERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
..+++.+.++.+++.|++++|++||++|+|||++++.+..+
T Consensus 44 ~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~~~~ 84 (105)
T cd03179 44 LRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYTHVA 84 (105)
T ss_pred HHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHHHhc
Confidence 45667777777777888889999999999999999877554
No 106
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.10 E-value=1e-05 Score=62.76 Aligned_cols=39 Identities=10% Similarity=-0.103 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhC--CCCcccCCCCChhhHHHHHHHHHH
Q 022443 246 AALYEAAETWVDALN--GREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 246 ~~l~~~l~~~~~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
+.+.+.++.+++.|+ +++||+||++|+|||++++.+..+
T Consensus 47 ~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~ 87 (121)
T cd03191 47 HWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNA 87 (121)
T ss_pred HHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHH
Confidence 456777776777886 457999999999999999886543
No 107
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.10 E-value=4.6e-06 Score=63.72 Aligned_cols=43 Identities=9% Similarity=-0.019 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
...+++.+.++.+++.|++++|++||++|+|||++++.+..+.
T Consensus 40 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~ 82 (113)
T cd03178 40 RYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRLE 82 (113)
T ss_pred HHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHHH
Confidence 3456677788877778888899999999999999998776653
No 108
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.09 E-value=6.2e-06 Score=64.03 Aligned_cols=43 Identities=14% Similarity=-0.077 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
...+.+.+.++.+++.|++++||+|+++|+||+++++.+..+.
T Consensus 40 ~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~~ 82 (123)
T cd03181 40 AALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLGF 82 (123)
T ss_pred HHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHHH
Confidence 3456677788877778888899999999999999998877653
No 109
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.05 E-value=2e-05 Score=54.48 Aligned_cols=58 Identities=12% Similarity=0.339 Sum_probs=45.0
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHH-HHhcCCccccEEEECCeEeec
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IKWSEYKKVPILMVDGEQLVD 146 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~-~~~~p~~~vP~l~~~g~~l~e 146 (297)
++++|+.++||+|.+++.+|++. ++++..++++ +.++ ....+...+|+++.+|+.++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~~~~l~~~~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--EFPDLADEYGVMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--cCHhHHHHcCCcccCEEEECCEEEEe
Confidence 48999999999999999999875 5666666654 2233 346677889999999988764
No 110
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.03 E-value=9.6e-06 Score=63.78 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHhh
Q 022443 242 TDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVHN 287 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~ 287 (297)
++..+...+.++.+.+.|++++||+||+||.+|+++|++|..+...
T Consensus 56 ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~ 101 (126)
T cd03211 56 DQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTT 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhc
Confidence 3555667777887777999999999999999999999999888754
No 111
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.01 E-value=1e-05 Score=59.69 Aligned_cols=46 Identities=15% Similarity=0.000 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHhh
Q 022443 242 TDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVHN 287 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~ 287 (297)
+....++.+.++.+++.|++++|++||++|+||+++++.+..+...
T Consensus 27 ~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~ 72 (95)
T PF00043_consen 27 EEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERL 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHh
Confidence 3556778888888888888999999999999999999987765443
No 112
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.99 E-value=4.3e-05 Score=59.81 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 242 TDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
+...+++.+.++.+++.|++++|+.||++|+||+++++.+....
T Consensus 57 ~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~ 100 (124)
T cd03202 57 EAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWAR 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHH
Confidence 35667788889987789999999999999999999999875543
No 113
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=97.99 E-value=1.7e-05 Score=57.95 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHh
Q 022443 244 ERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVH 286 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~ 286 (297)
..+++.+.++.+++.|++++|++||++|+|||++++.+..+..
T Consensus 20 ~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~ 62 (88)
T cd03193 20 IYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILY 62 (88)
T ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHh
Confidence 4567788888777799999999999999999999998877653
No 114
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=97.97 E-value=7.5e-06 Score=60.51 Aligned_cols=45 Identities=20% Similarity=0.106 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHhh
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVHN 287 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~ 287 (297)
...+++.+.++.+++.|++++|++|+++|+||+.+++.+.++...
T Consensus 36 ~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~ 80 (100)
T cd00299 36 EAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLL 80 (100)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 345667788887878898899999999999999999988765543
No 115
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=97.95 E-value=3.7e-05 Score=57.40 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHH
Q 022443 250 EAAETWVDALNGREFLGMCFKYLISSSTCKHLIN 283 (297)
Q Consensus 250 ~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~ 283 (297)
+.++.+++.|++++|++|+++|+|||++++.+..
T Consensus 42 ~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~ 75 (96)
T cd03200 42 AVLRALNSALGRSPWLVGSEFTVADIVSWCALLQ 75 (96)
T ss_pred HHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHH
Confidence 4444455588889999999999999999988753
No 116
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=97.90 E-value=1.2e-05 Score=60.18 Aligned_cols=45 Identities=20% Similarity=0.057 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCC--cccCCCCChhhHHHHHHHHHHHhh
Q 022443 243 DERAALYEAAETWVDALNGRE--FLGMCFKYLISSSTCKHLINFVHN 287 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~--fL~Gd~~T~ADi~l~~~L~~l~~~ 287 (297)
...+++.+.++.+++.|+++. ||+|++||+||+++|++|..+...
T Consensus 35 ~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~ 81 (99)
T PF14497_consen 35 FSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc
Confidence 556778888887777887766 999999999999999999776644
No 117
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=5.4e-05 Score=55.73 Aligned_cols=74 Identities=22% Similarity=0.418 Sum_probs=58.9
Q ss_pred CCCCCeEEEEEe-----CCCccHHHHHHHHhHCC-CCeEEEEcC--CCCHHHHH-hcCCccccEEEECCeEeechHHHHH
Q 022443 82 DLVPKEVVLYQY-----EACPFCNKVKAFLDYYD-IPYKVVEVN--PINKKEIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (297)
Q Consensus 82 ~~~~~~~~Ly~~-----~~sp~~~~vr~~L~~~g-i~~~~~~v~--~~~~~~~~-~~p~~~vP~l~~~g~~l~eS~~I~~ 152 (297)
.+.+++++||-. |.|.|+.++--+|...| ++|..++|- ..-+..++ .+...+.|.|.++|+.+++|+-|.+
T Consensus 11 ~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~E 90 (105)
T COG0278 11 QIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVRE 90 (105)
T ss_pred HhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHH
Confidence 455788999964 67999999999999999 778777762 22234455 6788999999999999999988877
Q ss_pred HHH
Q 022443 153 QLD 155 (297)
Q Consensus 153 yL~ 155 (297)
..+
T Consensus 91 m~q 93 (105)
T COG0278 91 MYQ 93 (105)
T ss_pred HHH
Confidence 654
No 118
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=97.89 E-value=4.7e-05 Score=59.40 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHHHHHHHhCC--CCcccCCCCChhhHHHHHHHHHHH
Q 022443 241 ITDERAALYEAAETWVDALNG--REFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 241 i~~~~~~l~~~l~~~~~~L~~--~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
.+...+++.+.++.+++.|++ ++|++|+++|+||+++++++.++.
T Consensus 30 ~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~ 76 (124)
T cd03184 30 REEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLE 76 (124)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHH
Confidence 345567788888877778874 799999999999999999876543
No 119
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.89 E-value=5.5e-05 Score=53.30 Aligned_cols=56 Identities=29% Similarity=0.393 Sum_probs=50.0
Q ss_pred CCccHHHHHHHHhHCCCC---eEEEEcCCCCHHHHHhcCCccccEEEE-CCeEeechHHHHHHHH
Q 022443 95 ACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (297)
Q Consensus 95 ~sp~~~~vr~~L~~~gi~---~~~~~v~~~~~~~~~~~p~~~vP~l~~-~g~~l~eS~~I~~yL~ 155 (297)
.+|-|..+.++|+..+.+ |+++..+... ++|.+++|+|.+ +|+.+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-----~Sptg~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-----LSPTGELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-----cCCCCCCCEEEECCCcEEECHHHHHHhhC
Confidence 478999999999999999 9999887433 389999999999 9999999999999983
No 120
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=97.80 E-value=0.00012 Score=57.06 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHH-hCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDA-LNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~-L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
...+++.+.++.+++. +++++|++||++|+|||++++.+..+
T Consensus 45 ~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~ 87 (126)
T cd03183 45 KAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQP 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHH
Confidence 3456677888866665 56678999999999999999876544
No 121
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=97.72 E-value=0.00011 Score=58.21 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHhCC----------------CCcccCCCCChhhHHHHHHHHHH
Q 022443 242 TDERAALYEAAETWVDALNG----------------REFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~----------------~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
+...+.+.+.|+.+++.|++ ++||+||++|+|||.+++.|..+
T Consensus 28 e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~ 86 (134)
T cd03198 28 ENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIV 86 (134)
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34557788888877778876 78999999999999999997754
No 122
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.69 E-value=0.00038 Score=51.49 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=51.7
Q ss_pred EEEEEeCCC------ccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hc----CCccccEEEECCeEeechHHHHHH
Q 022443 88 VVLYQYEAC------PFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WS----EYKKVPILMVDGEQLVDSSAIIDQ 153 (297)
Q Consensus 88 ~~Ly~~~~s------p~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~----p~~~vP~l~~~g~~l~eS~~I~~y 153 (297)
|++|....+ -.|++|+.+|+.+||+|+.++++... +.++. .. +..+||.|+++|.++++..++...
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 677776654 35889999999999999999997432 33433 33 458999999999999999888774
No 123
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=97.63 E-value=0.00019 Score=55.95 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCcccCCCCChhhHHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNG-REFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~-~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
...+++.+.++.+++.|++ ++||+||++|+||+++++++.++.
T Consensus 30 ~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~ 73 (121)
T cd03201 30 GTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLE 73 (121)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHH
Confidence 3456688888878888874 799999999999999999776654
No 124
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=97.63 E-value=0.00014 Score=54.68 Aligned_cols=42 Identities=10% Similarity=-0.089 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhCC--CCcccCCCCChhhHHHHHHHHHHH
Q 022443 244 ERAALYEAAETWVDALNG--REFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~~--~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
..+.+...++.+++.|++ ++|++|+++|+||+++++.+..+.
T Consensus 40 ~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~ 83 (104)
T cd03192 40 LKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLL 83 (104)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHH
Confidence 345567777766677766 899999999999999999876654
No 125
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.63 E-value=0.0001 Score=55.26 Aligned_cols=44 Identities=9% Similarity=-0.191 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHh
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVH 286 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~ 286 (297)
...+++.+.++.+++.|++++|++||++|+|||++++.+..+..
T Consensus 30 ~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~ 73 (103)
T cd03207 30 AGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQ 73 (103)
T ss_pred hhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHH
Confidence 34567888888777789989999999999999999987766543
No 126
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.61 E-value=0.00011 Score=54.90 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLI 282 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~ 282 (297)
...+++.+.++.+++.|++++|++|+++|+||+.+++++.
T Consensus 33 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~ 72 (100)
T cd03206 33 TAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVA 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHH
Confidence 3567788888888889999999999999999999998764
No 127
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=97.59 E-value=0.00012 Score=58.41 Aligned_cols=44 Identities=9% Similarity=-0.032 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHHh
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFVH 286 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~ 286 (297)
+...+..+.++.+++.|++++||+||+||.+|+.+++++..+..
T Consensus 64 ~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~ 107 (137)
T cd03212 64 EIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLK 107 (137)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHh
Confidence 44556677778777789999999999999999999999888764
No 128
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.49 E-value=0.00015 Score=55.71 Aligned_cols=32 Identities=28% Similarity=0.736 Sum_probs=30.4
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~ 119 (297)
++||+.+.||+|++++.+|+++|++|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 58999999999999999999999999999885
No 129
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.48 E-value=0.00076 Score=47.94 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=44.9
Q ss_pred eEEEEEeCCCccHHHH----HHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEee
Q 022443 87 EVVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLV 145 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~v----r~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~ 145 (297)
.+.+|. ++||.|..+ +.++++.|+.++.+.++ +..+....+...+|+|+.||+.+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNEILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHcCCCcCCEEEECCEEEE
Confidence 367776 999999999 66888899999998887 233445568899999999997664
No 130
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.46 E-value=0.00021 Score=54.84 Aligned_cols=44 Identities=16% Similarity=-0.065 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCC----------CcccCCCCChhhHHHHHHHHHHH
Q 022443 242 TDERAALYEAAETWVDALNGR----------EFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~~----------~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
+....++...++.+++.|.++ +||+||++|+|||++++.+..+.
T Consensus 28 ~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~ 81 (111)
T cd03204 28 KKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLK 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 355667777888777777654 49999999999999999876654
No 131
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.46 E-value=0.00061 Score=52.40 Aligned_cols=41 Identities=15% Similarity=-0.059 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCcccCCCCChhhHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALN-GREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~-~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
....++.+.++.+++.|+ +++||+|+ +|+||+++++.+..+
T Consensus 42 ~~~~~~~~~~~~le~~l~~~~~~l~G~-fSiAD~~l~~~~~~~ 83 (114)
T cd03195 42 AAQAAAEKLIAVAEALLPPGAANLFGE-WCIADTDLALMLNRL 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCC-ccHHHHHHHHHHHHH
Confidence 344555555555555774 55899995 999999999876543
No 132
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=97.40 E-value=0.00035 Score=54.22 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 244 ERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
..+.+.+.+..+++.|++++||+|+++|+||+++++.+..+.
T Consensus 36 ~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~ 77 (121)
T cd03209 36 YLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHR 77 (121)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHH
Confidence 345677777777778888899999999999999998765543
No 133
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=97.36 E-value=0.00053 Score=53.24 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhC---CCCcccCCCCChhhHHHHHHHHHH
Q 022443 248 LYEAAETWVDALN---GREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 248 l~~~l~~~~~~L~---~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
+.+.++.+++.|+ +++|++| ++|+|||++++++.++
T Consensus 35 ~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~ 73 (120)
T cd03203 35 AAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERF 73 (120)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHH
Confidence 3444454444554 5899999 9999999999988765
No 134
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.26 E-value=0.00062 Score=52.37 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 245 RAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 245 ~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
..++...++.+++.+++++||+|| +|+||+++++.+..+
T Consensus 46 ~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~ 84 (114)
T cd03194 46 IARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRF 84 (114)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHH
Confidence 445566666555555678899999 999999999876554
No 135
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.24 E-value=0.0006 Score=52.63 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=31.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~ 119 (297)
++++|+.+.|++|++++.+|+++||+|+.+++.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 379999999999999999999999999999984
No 136
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.24 E-value=0.0004 Score=54.92 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=31.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~ 119 (297)
+++||+.+.||+|++++.+|+++||+|+.+++.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 489999999999999999999999999999985
No 137
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.23 E-value=0.00037 Score=52.80 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=30.3
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~ 119 (297)
+++|+.+.||+|++++.+|+++||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999999985
No 138
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=97.16 E-value=0.00077 Score=52.70 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhC---CCCcccCCCCChhhHHHHHHHHHH
Q 022443 245 RAALYEAAETWVDALN---GREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 245 ~~~l~~~l~~~~~~L~---~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
.+++...+..+++.|+ +++||+|+++|+||+++++.+..+
T Consensus 37 ~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~ 79 (126)
T cd03210 37 IKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIH 79 (126)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHH
Confidence 3446677776667776 358999999999999999876444
No 139
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.13 E-value=0.0037 Score=44.46 Aligned_cols=56 Identities=18% Similarity=0.429 Sum_probs=41.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhH----CCCCeEEEEcCCCCHHH-HHhcCCccccEEEECCe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKE-IKWSEYKKVPILMVDGE 142 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~gi~~~~~~v~~~~~~~-~~~~p~~~vP~l~~~g~ 142 (297)
++++|+.++||+|..+.-.|+. .+..+....+|..+..+ ....+...+|+++.+|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCE
Confidence 4889999999999999888864 34445555665433333 44667788999999886
No 140
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.10 E-value=0.003 Score=45.43 Aligned_cols=55 Identities=25% Similarity=0.550 Sum_probs=40.0
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC--CCCeEEEEcCCCCHHHHHhcCCccccEEEECC
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY--DIPYKVVEVNPINKKEIKWSEYKKVPILMVDG 141 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~--gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g 141 (297)
.++||+.++|+.|..++..|+.. ..++++..+|....+++...-...||+|..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCCCCEEEEcC
Confidence 48999999999999999999965 34555655555555566533335899999977
No 141
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=97.10 E-value=0.00078 Score=53.63 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhC--CCCcccCCCCChhhHHHHHHHHHHH
Q 022443 247 ALYEAAETWVDALN--GREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 247 ~l~~~l~~~~~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
.+...++.+++.|+ +++|++|+++|+||++++..+..+.
T Consensus 43 ~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~ 83 (137)
T cd03208 43 AKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVE 83 (137)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 34566676666776 6789999999999999998876553
No 142
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.09 E-value=0.0011 Score=52.37 Aligned_cols=40 Identities=33% Similarity=0.589 Sum_probs=34.3
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~ 126 (297)
++++|+.+.|+.|++++.+|+++||+|+.+++. +...+++
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el 42 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDEL 42 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHH
Confidence 489999999999999999999999999999874 4444443
No 143
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.06 E-value=0.0012 Score=52.24 Aligned_cols=40 Identities=30% Similarity=0.683 Sum_probs=34.4
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~ 126 (297)
++++|+.+.|+.|++++.+|+.+||+|+.+++. +...+++
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL 42 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEI 42 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHH
Confidence 489999999999999999999999999999985 4445443
No 144
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=96.92 E-value=0.0027 Score=48.28 Aligned_cols=42 Identities=17% Similarity=-0.039 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhC-CCCcccCCCCChhhHHHHHHHHHHHh
Q 022443 244 ERAALYEAAETWVDALN-GREFLGMCFKYLISSSTCKHLINFVH 286 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~-~~~fL~Gd~~T~ADi~l~~~L~~l~~ 286 (297)
...++.+.+..+..+|. +++||+|+ .||||..++++|.++..
T Consensus 44 a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ml~Rl~~ 86 (117)
T PF14834_consen 44 AQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLALMLNRLVT 86 (117)
T ss_dssp HHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHHHHHHHHH
Confidence 33444444554555665 47999999 99999999999999873
No 145
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.87 E-value=0.0021 Score=48.76 Aligned_cols=39 Identities=15% Similarity=0.446 Sum_probs=33.6
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~ 126 (297)
|++|+.+.|+.|++++.+|++.|++|+.+++. +...+++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL 41 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATL 41 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHH
Confidence 58999999999999999999999999999874 4445554
No 146
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.85 E-value=0.0013 Score=50.84 Aligned_cols=32 Identities=22% Similarity=0.661 Sum_probs=30.2
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~ 119 (297)
++||+.+.||+|++++.+|++.|++|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999999885
No 147
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0044 Score=43.17 Aligned_cols=59 Identities=25% Similarity=0.582 Sum_probs=47.5
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCC------------CHHH---HHhcCCccccEEEE-CCeEeec
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI------------NKKE---IKWSEYKKVPILMV-DGEQLVD 146 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~------------~~~~---~~~~p~~~vP~l~~-~g~~l~e 146 (297)
.+||+...||-|..+...|+..+++|+.+++... .+++ .+.+++-.+|.|.. ||+++..
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 3999999999999999999999999999998521 1122 45789999999886 7777663
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.82 E-value=0.0026 Score=48.90 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=34.6
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEIK 127 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~~ 127 (297)
+++||+.+.|+.|++++.+|+++|++|+.+++- +....++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~ 43 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLR 43 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHH
Confidence 479999999999999999999999999999873 44455543
No 149
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.82 E-value=0.014 Score=41.35 Aligned_cols=58 Identities=17% Similarity=0.461 Sum_probs=42.5
Q ss_pred eEEEEEeCCCccHHHHHH----HHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeech
Q 022443 87 EVVLYQYEACPFCNKVKA----FLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDS 147 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~----~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS 147 (297)
.++++ .+.||+|..+.. ++...|+.++.+++ .+.+++...+-..+|.|++||+..+..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEIEKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHHHHTT-SSSSEEEETTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHHHHcCCCCCCEEEECCEEEEEe
Confidence 36674 566999996655 55667888877776 445556778999999999999876654
No 150
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.74 E-value=0.0066 Score=44.56 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=44.6
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEee
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLV 145 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~ 145 (297)
=.+.+|..++||+|..+..++++. ++.++.++++.. .+.....+-..+|.++.||+.+.
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-HHHHHHcCCccCCEEEECCEEEE
Confidence 368899999999999988887765 577777776522 22344677788999999998765
No 151
>PHA02125 thioredoxin-like protein
Probab=96.63 E-value=0.0057 Score=43.22 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=40.0
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHH-HhcCCccccEEEECCe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGE 142 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~~g~ 142 (297)
++++|+.++|+.|+.+.-.|+. +.++...+|.....++ ...+-..+|++. +|+
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~~~~l~~~~~v~~~PT~~-~g~ 54 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDEGVELTAKHHIRSLPTLV-NTS 54 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCCCHHHHHHcCCceeCeEE-CCE
Confidence 4789999999999999999875 4566677765444444 466778999998 454
No 152
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0074 Score=51.28 Aligned_cols=73 Identities=21% Similarity=0.427 Sum_probs=59.7
Q ss_pred CCCCeEEEEEe-----CCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hcCCccccEEEECCeEeechHHHHHHH
Q 022443 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (297)
Q Consensus 83 ~~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~p~~~vP~l~~~g~~l~eS~~I~~yL 154 (297)
...++++||-. +.|.|++.+--+|++.|++|...+|-.++ +..++ .+-..+.|.|+++|..+++++-|.+.+
T Consensus 136 v~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 136 VKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 34578999965 57999999999999999999998884332 33355 778899999999999999988887765
Q ss_pred H
Q 022443 155 D 155 (297)
Q Consensus 155 ~ 155 (297)
.
T Consensus 216 ~ 216 (227)
T KOG0911|consen 216 E 216 (227)
T ss_pred h
Confidence 4
No 153
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.012 Score=45.43 Aligned_cols=40 Identities=25% Similarity=0.571 Sum_probs=34.6
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~ 126 (297)
+++||+.+.|.-|++++..|++.||+|+.+++- +..++++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL 43 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREEL 43 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHH
Confidence 699999999999999999999999999998763 5555553
No 154
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.09 E-value=0.011 Score=43.81 Aligned_cols=41 Identities=12% Similarity=-0.036 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 242 TDERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 242 ~~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
+....++.+.++.+++.|++++| |++|+|||++++.+..+.
T Consensus 36 ~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~ 76 (98)
T cd03205 36 ERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLD 76 (98)
T ss_pred HHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHH
Confidence 35567788888877778888888 899999999999876554
No 155
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.07 E-value=0.016 Score=45.46 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=34.7
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEIK 127 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~~ 127 (297)
.++||+.+.|.-|++++..|+++||+|+.+++- +...+++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~ 44 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLR 44 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHH
Confidence 589999999999999999999999999999873 44455543
No 156
>PRK10853 putative reductase; Provisional
Probab=96.03 E-value=0.013 Score=45.47 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=34.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEIK 127 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~~ 127 (297)
++++|+.+.|.-|++++.+|++.|++|+.+++- +...+++.
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~ 43 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQ 43 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHH
Confidence 389999999999999999999999999999873 44455543
No 157
>PRK10026 arsenate reductase; Provisional
Probab=95.91 E-value=0.019 Score=45.92 Aligned_cols=41 Identities=12% Similarity=0.335 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEc--CCCCHHHH
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEV--NPINKKEI 126 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v--~~~~~~~~ 126 (297)
.++++|+++.|.-|++++.+|+++|++|+++++ ++....++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL 44 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL 44 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHH
Confidence 368999999999999999999999999999986 34455553
No 158
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.66 E-value=0.033 Score=36.12 Aligned_cols=52 Identities=29% Similarity=0.506 Sum_probs=39.6
Q ss_pred EEEEEeCCCccHHHHHHHHh-----HCCCCeEEEEcCCCCHHHH--HhcCCccccEEEE
Q 022443 88 VVLYQYEACPFCNKVKAFLD-----YYDIPYKVVEVNPINKKEI--KWSEYKKVPILMV 139 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~-----~~gi~~~~~~v~~~~~~~~--~~~p~~~vP~l~~ 139 (297)
+.+|+..+|++|.+++..+. ..++.+..+.++....... ...+...+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 46788889999999999999 5677777777764443222 4678899999987
No 159
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.40 E-value=0.033 Score=42.68 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=33.0
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~ 126 (297)
+++|+.+.|.-|++++..|++.|++|+.+++- +....++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el 41 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAEL 41 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHH
Confidence 58999999999999999999999999999873 3444443
No 160
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.40 E-value=0.033 Score=42.82 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=33.2
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcC--CCCHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN--PINKKEI 126 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~--~~~~~~~ 126 (297)
+++|+.+.|.-|++++.+|++.|++|+.+++. +....++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el 41 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSEL 41 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHH
Confidence 58999999999999999999999999999874 4445554
No 161
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.41 E-value=0.2 Score=38.00 Aligned_cols=67 Identities=21% Similarity=0.419 Sum_probs=46.2
Q ss_pred CCccHHHHHHHHhHC---CCCeEEEEcCCC-CHHH-HH-hc-CCccccEEEE-CCe-------------EeechHHHHHH
Q 022443 95 ACPFCNKVKAFLDYY---DIPYKVVEVNPI-NKKE-IK-WS-EYKKVPILMV-DGE-------------QLVDSSAIIDQ 153 (297)
Q Consensus 95 ~sp~~~~vr~~L~~~---gi~~~~~~v~~~-~~~~-~~-~~-p~~~vP~l~~-~g~-------------~l~eS~~I~~y 153 (297)
+||.|..+.=+|... .-..+++.|+.. .+.+ +. +. .+..+|+|+. +|. .|.+...|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 399999999988764 222344455532 2333 34 33 4688999996 333 68999999999
Q ss_pred HHhhcCCC
Q 022443 154 LDQKLTPK 161 (297)
Q Consensus 154 L~~~~~~~ 161 (297)
|.++|+-+
T Consensus 103 La~r~g~p 110 (112)
T PF11287_consen 103 LAERHGFP 110 (112)
T ss_pred HHHHcCCC
Confidence 99999853
No 162
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.18 E-value=0.41 Score=35.78 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=45.1
Q ss_pred eEEEEEeCCC------ccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hc---------CCccccEEEECCeEeechH
Q 022443 87 EVVLYQYEAC------PFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WS---------EYKKVPILMVDGEQLVDSS 148 (297)
Q Consensus 87 ~~~Ly~~~~s------p~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~---------p~~~vP~l~~~g~~l~eS~ 148 (297)
.|++|....+ -.++++..+|+.++|+|+.+++...+ +..+. .. +....|.|+.||..+++-.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 3678876655 34689999999999999999997532 22333 22 3345579999999999988
Q ss_pred HHHHHHH
Q 022443 149 AIIDQLD 155 (297)
Q Consensus 149 ~I~~yL~ 155 (297)
++.+.-+
T Consensus 82 ~f~ea~E 88 (99)
T PF04908_consen 82 DFEEANE 88 (99)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 8877543
No 163
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.29 E-value=0.6 Score=36.21 Aligned_cols=58 Identities=17% Similarity=0.435 Sum_probs=37.6
Q ss_pred eEEEEEeCCCccHHHHHHHHh----HCCCCeEEEEcCCCC------HHH---H-Hh----cCCccccEEEE--CCeEe
Q 022443 87 EVVLYQYEACPFCNKVKAFLD----YYDIPYKVVEVNPIN------KKE---I-KW----SEYKKVPILMV--DGEQL 144 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~----~~gi~~~~~~v~~~~------~~~---~-~~----~p~~~vP~l~~--~g~~l 144 (297)
-++.|+.++||+|+.+.-.|+ +.++++-.++++... ..+ + .. .+-..+|+++. +|+.+
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 477889999999999655554 456777777776321 111 1 22 23455999986 88654
No 164
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=93.07 E-value=0.41 Score=37.77 Aligned_cols=41 Identities=12% Similarity=-0.094 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHH
Q 022443 243 DERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINF 284 (297)
Q Consensus 243 ~~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (297)
....++...|+.++.++.......| ++|+-||.+|+.|..+
T Consensus 59 ~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~L 99 (132)
T PF04399_consen 59 ELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSL 99 (132)
T ss_dssp HHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhh
Confidence 4455666666666666665555555 8999999999998875
No 165
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.83 E-value=0.24 Score=37.79 Aligned_cols=52 Identities=19% Similarity=0.500 Sum_probs=35.2
Q ss_pred CeEEEE-EeCCCccHHHHHHHHhHCC-----CCeEEEEcCCCCHHHH-HhcCCccccEEEE
Q 022443 86 KEVVLY-QYEACPFCNKVKAFLDYYD-----IPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly-~~~~sp~~~~vr~~L~~~g-----i~~~~~~v~~~~~~~~-~~~p~~~vP~l~~ 139 (297)
..+++| +.+|||+|+.++-+|++.. +.+..++++ ..+++ ...+-..+|++..
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEE
Confidence 345555 5689999999988887653 344444444 33343 4678889999986
No 166
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.56 E-value=1.3 Score=34.63 Aligned_cols=41 Identities=17% Similarity=-0.164 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCCChhhHHHHHHHHHHH
Q 022443 244 ERAALYEAAETWVDALNGREFLGMCFKYLISSSTCKHLINFV 285 (297)
Q Consensus 244 ~~~~l~~~l~~~~~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~ 285 (297)
...++...|+.+...+..... .+.++|+-||.+|+.|..+-
T Consensus 61 ~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt 101 (128)
T cd03199 61 YIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLT 101 (128)
T ss_pred HHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhh
Confidence 334455555544445544334 45579999999999987753
No 167
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.43 E-value=0.93 Score=31.80 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=40.2
Q ss_pred CeEEEEEeCCCccHHHHHHHHhH-----CCCCeEEEEcCCCCHHHHHhcCCccccEEEE--CCeE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQ 143 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~-----~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~--~g~~ 143 (297)
.-+.+|+.++|++|......+++ .++.+-.++++. ........+...+|+++. +|..
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE-NPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC-ChhHHHhcCcccccEEEEEECCEE
Confidence 35788888999999999998887 677766666653 222234456678998775 6653
No 168
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=91.73 E-value=0.99 Score=33.08 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=38.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhH----CCCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l 144 (297)
.+.+|+.++|+.|....-.++. .+-.+....+|....+++ ...+-..+|++.. +|+.+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 4667777999999999877765 121244455554444443 3556689998875 77654
No 169
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=91.69 E-value=1.4 Score=31.99 Aligned_cols=71 Identities=24% Similarity=0.415 Sum_probs=46.4
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCCHHH-HHhcCCccccEEEE--CCeEe------echHHHHH
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL------VDSSAIID 152 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~~~~-~~~~p~~~vP~l~~--~g~~l------~eS~~I~~ 152 (297)
.-++.|+.++|+.|+...-.+... +-++....+|...... .....-..+|.+.. +|+.+ .+...|.+
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred CEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 357778888999999988666432 2245555555443333 45667889999885 77654 25567777
Q ss_pred HHHh
Q 022443 153 QLDQ 156 (297)
Q Consensus 153 yL~~ 156 (297)
+|++
T Consensus 99 ~i~~ 102 (103)
T PF00085_consen 99 FIEK 102 (103)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7765
No 170
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=91.39 E-value=0.27 Score=40.52 Aligned_cols=44 Identities=7% Similarity=-0.095 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCC---CcccCCC-CChhhHHHHHHHHHHHhhcCCCc
Q 022443 249 YEAAETWVDALNGR---EFLGMCF-KYLISSSTCKHLINFVHNLSTNK 292 (297)
Q Consensus 249 ~~~l~~~~~~L~~~---~fL~Gd~-~T~ADi~l~~~L~~l~~~~~~~~ 292 (297)
.+.+..+.+.|++. .|++|+. +|-.||.++++|.-++.---++.
T Consensus 114 ~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~p~LP~~ 161 (168)
T PF11801_consen 114 MECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLVPELPDP 161 (168)
T ss_pred HHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhcccCCcH
Confidence 44555555577777 8999987 99999999999988776544444
No 171
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.53 Score=41.40 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=54.5
Q ss_pred CCeEEEEEeCC------CccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH--h---cCCccccEEEECCeEeechHHHH
Q 022443 85 PKEVVLYQYEA------CPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK--W---SEYKKVPILMVDGEQLVDSSAII 151 (297)
Q Consensus 85 ~~~~~Ly~~~~------sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~--~---~p~~~vP~l~~~g~~l~eS~~I~ 151 (297)
.+.|++|.-.. ---|..||.+|+-.+|.|+.++|.+.. +++++ + .....+|.++++|..|++-..|+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 45788886542 146899999999999999999998654 45543 2 24678999999999999999998
Q ss_pred HH
Q 022443 152 DQ 153 (297)
Q Consensus 152 ~y 153 (297)
+.
T Consensus 210 ~L 211 (281)
T KOG2824|consen 210 RL 211 (281)
T ss_pred hh
Confidence 74
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.10 E-value=0.79 Score=45.13 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=44.5
Q ss_pred CCeEEEEEeCCCccHHHHHHHH----hHC-CCCeEEEEcCCCCHHHH-HhcCCccccEEEECCeEeec
Q 022443 85 PKEVVLYQYEACPFCNKVKAFL----DYY-DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVD 146 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L----~~~-gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~~g~~l~e 146 (297)
+-.+++|..++||||..+..++ .++ +|.++.+++... +++ +..+-..||.+++||+.+.+
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~--~~~~~~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF--PDLKDEYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc--HHHHHhCCceecCEEEECCEEEEe
Confidence 3468999999999998876644 444 688888877532 344 37788999999999876543
No 173
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=90.28 E-value=1.2 Score=38.11 Aligned_cols=56 Identities=11% Similarity=0.335 Sum_probs=38.1
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHCCC---CeEEEEcCCCCHHHH-HhcCCccccEEEEC
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPINKKEI-KWSEYKKVPILMVD 140 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gi---~~~~~~v~~~~~~~~-~~~p~~~vP~l~~~ 140 (297)
+-.+++|+.++||+|..+..+++..-- ..+...+|....+++ ...+-..+|+++.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEe
Confidence 345777999999999999888876421 233334554444443 46678889999973
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.70 E-value=0.54 Score=45.81 Aligned_cols=71 Identities=17% Similarity=0.349 Sum_probs=47.6
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHCC-----CCeEEEEcCCCCHHHH-HhcCCccccEEEECCeEeechH----HHHHHH
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYYD-----IPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVDSS----AIIDQL 154 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~g-----i~~~~~~v~~~~~~~~-~~~p~~~vP~l~~~g~~l~eS~----~I~~yL 154 (297)
+-.+++|..+.||||-.+..++.... |..+. +|....+++ .......||.++.||..+++.. .+++.+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~--id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l 195 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTM--IDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKL 195 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE--EEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 44689999999999999888776653 33333 343333443 4667789999999887766533 344444
Q ss_pred Hhh
Q 022443 155 DQK 157 (297)
Q Consensus 155 ~~~ 157 (297)
.+.
T Consensus 196 ~~~ 198 (515)
T TIGR03140 196 EET 198 (515)
T ss_pred hhc
Confidence 433
No 175
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=89.56 E-value=0.44 Score=36.20 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=23.5
Q ss_pred EEeCCCccHHHHHHHHhHCCCCeEEEEcC
Q 022443 91 YQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (297)
Q Consensus 91 y~~~~sp~~~~vr~~L~~~gi~~~~~~v~ 119 (297)
|+.+.|.-|++++.+|++.|++|+.+++.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999999884
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.36 E-value=0.57 Score=45.66 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=48.9
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHHH-HhcCCccccEEEECCeEeec----hHHHHHHH
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVD----SSAIIDQL 154 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~~g~~l~e----S~~I~~yL 154 (297)
+-.+++|..+.||||..+..++... +|..+.+ |....+++ .......||.++.||..+++ -..+++.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI--DGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE--EchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 4569999999999999988777654 3433433 43334443 46678899999998877665 23455666
Q ss_pred Hhhc
Q 022443 155 DQKL 158 (297)
Q Consensus 155 ~~~~ 158 (297)
.+..
T Consensus 195 ~~~~ 198 (517)
T PRK15317 195 DTGA 198 (517)
T ss_pred hccc
Confidence 5543
No 177
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=89.08 E-value=2.1 Score=32.53 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=40.8
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEeec
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQLVD 146 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l~e 146 (297)
.-+..|+.++|+.|+.+.-.|++. ++ ....+|....+++ +..+-..+|++.. +|+.+..
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 356677779999999888777653 34 4455554444443 4567889999886 8887664
No 178
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=88.46 E-value=2.6 Score=30.48 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEe
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l 144 (297)
.-+..|+.++|+.|++..-.|+.. ...+....+|.....++ ...+-..+|++.. +|+.+
T Consensus 16 ~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 16 LLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 356778889999999998777652 33456666665544444 3456677998775 77654
No 179
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=88.37 E-value=8.5 Score=33.25 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=48.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEe------echHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL------VDSSAIIDQ 153 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l------~eS~~I~~y 153 (297)
-++.|+.+||+.|+...-.+++. +-......+|-...+++ ...+-..+|++.. +|+.+ .....|.+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~f 134 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAF 134 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHH
Confidence 57778889999999886665442 21234445554444443 3556778898874 77654 246788899
Q ss_pred HHhhcCC
Q 022443 154 LDQKLTP 160 (297)
Q Consensus 154 L~~~~~~ 160 (297)
+.+.+..
T Consensus 135 i~~~~~~ 141 (224)
T PTZ00443 135 ALGDFKK 141 (224)
T ss_pred HHHHHHh
Confidence 9888854
No 180
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=87.75 E-value=4.2 Score=30.08 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=35.9
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC----C-CCeEEEEcCCCCHHHHHhcCCccccEEEE--CCeEe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY----D-IPYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----g-i~~~~~~v~~~~~~~~~~~p~~~vP~l~~--~g~~l 144 (297)
.+..|+.+||+.|+...-.++.. + -......+|...........-..+|++.. +|+.+
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEEE
Confidence 56777889999999887666432 2 12333344433333345667788897765 77643
No 181
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=87.56 E-value=4.2 Score=30.66 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHH-HHhcCCccccEEEE--CCeEe
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~-~~~~p~~~vP~l~~--~g~~l 144 (297)
.-++.|+.+||+.|+...-.+.+. +.......+|....+. ....+-..+|+++. +|+.+
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEE
Confidence 357778889999998775444221 2223334444333233 33557789998874 77543
No 182
>PTZ00051 thioredoxin; Provisional
Probab=87.55 E-value=3.4 Score=29.98 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=36.6
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHH-HHhcCCccccEEEE--CCeEe
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~-~~~~p~~~vP~l~~--~g~~l 144 (297)
.-+..|+.++|+.|+...-.++.. ++.+ ..+|...... ....+-..+|+++. +|+.+
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVF--VKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEE--EEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 356778889999999887776652 4444 3444333333 34556788998775 77554
No 183
>PRK10996 thioredoxin 2; Provisional
Probab=87.08 E-value=6.5 Score=31.02 Aligned_cols=59 Identities=17% Similarity=0.346 Sum_probs=38.9
Q ss_pred CeEEEEEeCCCccHHHHHHHHhH----CCCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEe
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~----~gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l 144 (297)
..+..|+.+||+.|+...-.+.+ .+-.+....+|....+++ ...+-..+|+++. +|+.+
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 35777888999999987655544 233455566665554443 3566788998875 77654
No 184
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=86.47 E-value=2.8 Score=35.73 Aligned_cols=74 Identities=16% Similarity=0.425 Sum_probs=48.5
Q ss_pred CCeEEEEEe---CCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEee----c---
Q 022443 85 PKEVVLYQY---EACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQLV----D--- 146 (297)
Q Consensus 85 ~~~~~Ly~~---~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l~----e--- 146 (297)
+..+++|.. +|||.|+.+.-.+++. ++.+..+.+|....+++ ...+-..+|++.. +|..+. +
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 345778877 8999999988888665 34445666665444443 4678889999886 554331 2
Q ss_pred hHHHHHHHHhhc
Q 022443 147 SSAIIDQLDQKL 158 (297)
Q Consensus 147 S~~I~~yL~~~~ 158 (297)
-..+..+|+..+
T Consensus 100 ~~~l~~~i~~~~ 111 (215)
T TIGR02187 100 GYEFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHHHH
Confidence 345566666654
No 185
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=86.28 E-value=2.3 Score=32.59 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=39.0
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCC----eEEEEcCCCCHHHHH-hcCCccccEEEE--CCeEee
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLV 145 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~----~~~~~v~~~~~~~~~-~~p~~~vP~l~~--~g~~l~ 145 (297)
.++-|+.+||+.|+.+.-.|++.--. .....+|..+.+++. ..+-..+|++.. +|+.+.
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 45568889999999887777554222 233445544444543 557778999886 887664
No 186
>PRK09381 trxA thioredoxin; Provisional
Probab=85.64 E-value=7.5 Score=28.81 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=36.2
Q ss_pred eEEEEEeCCCccHHHHHHHHhH----CCCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l 144 (297)
-+..|+.++||.|+...-.++. .+-.+....+|....+.+ ...+-..+|+++. +|+.+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 5667778899999988766543 222244444554333333 3456788998875 77654
No 187
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=85.50 E-value=1.1 Score=34.56 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=14.5
Q ss_pred ccccEEEE--CCeEeechHHHHHHHHhhcCC
Q 022443 132 KKVPILMV--DGEQLVDSSAIIDQLDQKLTP 160 (297)
Q Consensus 132 ~~vP~l~~--~g~~l~eS~~I~~yL~~~~~~ 160 (297)
..-|.|.+ +|+.++|.+||++|+..-|.+
T Consensus 34 ~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 34 ESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp --S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred cccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 34588866 889999999999999988863
No 188
>PHA03075 glutaredoxin-like protein; Provisional
Probab=85.42 E-value=1 Score=34.33 Aligned_cols=70 Identities=19% Similarity=0.370 Sum_probs=48.6
Q ss_pred CCCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhc
Q 022443 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~ 158 (297)
|.+.+.|++.|.|+-|+-+..+|+++.=+|+...|+...- ....++|=+|-.|+. +.=-+.+.+||...|
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf----FsK~g~v~~lg~d~~-y~lInn~~~~lgne~ 70 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF----FSKDGQVKVLGMDKG-YTLINNFFKHLGNEY 70 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee----eccCCceEEEecccc-eehHHHHHHhhcccE
Confidence 3568999999999999999999999999999988873210 234566666665332 112245666666444
No 189
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=85.20 E-value=3.1 Score=32.39 Aligned_cols=61 Identities=10% Similarity=0.298 Sum_probs=40.1
Q ss_pred eEEEEEeCCCccHHHHHH-HHh------HCCCCeEEEEcCCCCHHHHH---------hcCCccccEEEE---CCeEeech
Q 022443 87 EVVLYQYEACPFCNKVKA-FLD------YYDIPYKVVEVNPINKKEIK---------WSEYKKVPILMV---DGEQLVDS 147 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~-~L~------~~gi~~~~~~v~~~~~~~~~---------~~p~~~vP~l~~---~g~~l~eS 147 (297)
-+..++..+|++|++... .+. ..+-.|..+.+|....+++. ..+.+.+|+++. +|+.+..+
T Consensus 18 Vll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 18 IFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 344567789999998843 332 23446777877754433321 346778998886 78888876
No 190
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=85.11 E-value=3 Score=32.01 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=37.0
Q ss_pred eEEEEEeCCCccHHHHHHHHhH------CCCCeEEEEcCCCCHHH-HHhcCCc-cccEEEE---CCeEeec
Q 022443 87 EVVLYQYEACPFCNKVKAFLDY------YDIPYKVVEVNPINKKE-IKWSEYK-KVPILMV---DGEQLVD 146 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~------~gi~~~~~~v~~~~~~~-~~~~p~~-~vP~l~~---~g~~l~e 146 (297)
.++.|+.++|++|+...-.+.. .+..|..+.++...... -..+..+ .+|+++. +|+.+..
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchh
Confidence 5667788999999998766655 23456666666432221 1233333 5998875 6666543
No 191
>PHA02278 thioredoxin-like protein
Probab=85.09 E-value=5.8 Score=29.70 Aligned_cols=58 Identities=17% Similarity=0.455 Sum_probs=37.4
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC------CCCeEEEEcCCCC--HHHH-HhcCCccccEEEE--CCeEe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPIN--KKEI-KWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~------gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~--~g~~l 144 (297)
-++-|+.+||+.|+...-.++.. .+++..+++|... .+++ ....-..+|++.. +|+.+
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 46667778999999887666443 2345555555321 2333 3567788998886 88765
No 192
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=84.22 E-value=10 Score=27.15 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=34.8
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCCHHH-HHhcCCccccEEEE--CCe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGE 142 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~~~~-~~~~p~~~vP~l~~--~g~ 142 (297)
-+..|+.++|+.|+.....++.. +-......+|....++ ....+-..+|.++. +|+
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 46666778999999887666542 2224444455433333 34556678998875 664
No 193
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=84.12 E-value=7.3 Score=28.39 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=35.6
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~ 142 (297)
.+..|+.++|+.|+...-.++.. +..+....+|....+.+ ....-..+|+++. +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC
Confidence 58888899999999877665433 23344444544333333 3556788898875 553
No 194
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=82.77 E-value=4.5 Score=29.81 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCccHHHHHHHH-------hHCCCCeEEEEcCCCC----HHHH-HhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFL-------DYYDIPYKVVEVNPIN----KKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L-------~~~gi~~~~~~v~~~~----~~~~-~~~p~~~vP~l~~ 139 (297)
..++.|+.++|++|+.....+ +..+-.+....+|... ..++ ...+-..+|+++.
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 357788889999999886443 1111134555555322 2233 3556778998874
No 195
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=82.62 E-value=4.8 Score=38.81 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=54.3
Q ss_pred EEEEEeCCCccHH-------HHHHHHhHCCCCeEEEEcCCCCHHHHH-hcCCccccEEEE--CCeE------eechHHHH
Q 022443 88 VVLYQYEACPFCN-------KVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQ------LVDSSAII 151 (297)
Q Consensus 88 ~~Ly~~~~sp~~~-------~vr~~L~~~gi~~~~~~v~~~~~~~~~-~~p~~~vP~l~~--~g~~------l~eS~~I~ 151 (297)
++-|+.+||..|. ++-..|.+.|-+.....||-....++. ...-...|+|.+ +|.. --+...|+
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv 125 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIV 125 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHH
Confidence 5667789998886 455667777778888888865544443 556677788876 6653 45789999
Q ss_pred HHHHhhcCCCC
Q 022443 152 DQLDQKLTPKR 162 (297)
Q Consensus 152 ~yL~~~~~~~~ 162 (297)
.||.++.++..
T Consensus 126 ~wl~kq~gPa~ 136 (493)
T KOG0190|consen 126 KWLKKQSGPAS 136 (493)
T ss_pred HHHHhccCCCc
Confidence 99999887644
No 196
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=82.54 E-value=7.7 Score=27.91 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=37.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeE
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQ 143 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~ 143 (297)
-+..|+.++|+.|+...-.+++. +-.+....+|....+++ ...+-..+|+++. +|+.
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 46667778999999887766543 22345556665554444 3556778998885 7754
No 197
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.43 E-value=1.6 Score=42.12 Aligned_cols=26 Identities=19% Similarity=-0.058 Sum_probs=21.7
Q ss_pred HhCCCCcccCCCCChhhHHHHHHHHH
Q 022443 258 ALNGREFLGMCFKYLISSSTCKHLIN 283 (297)
Q Consensus 258 ~L~~~~fL~Gd~~T~ADi~l~~~L~~ 283 (297)
.|.-..||+|..+|+||+++|+.|..
T Consensus 103 ~l~~~t~lvg~sls~Ad~aiw~~l~~ 128 (712)
T KOG1147|consen 103 FLVLRTFLVGNSLSIADFAIWGALHS 128 (712)
T ss_pred hhhHHHHhhccchhHHHHHHHHHHhc
Confidence 44456799999999999999998765
No 198
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=82.11 E-value=17 Score=28.81 Aligned_cols=73 Identities=14% Similarity=0.308 Sum_probs=42.4
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC------CCCeEEEEcCCCCH-HHHHhcCCccccEEEE---CCeEee------chHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINK-KEIKWSEYKKVPILMV---DGEQLV------DSSAI 150 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~------gi~~~~~~v~~~~~-~~~~~~p~~~vP~l~~---~g~~l~------eS~~I 150 (297)
-++.|+.+||+.|+...-.+... ++.+..+.+|.... ......+-..+|+++. +|+.+. .-..|
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l 102 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVL 102 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHH
Confidence 45667778999999887666532 23444455553322 2244556678997764 565542 23445
Q ss_pred HHHHHhhcC
Q 022443 151 IDQLDQKLT 159 (297)
Q Consensus 151 ~~yL~~~~~ 159 (297)
...|++...
T Consensus 103 ~~~l~~l~~ 111 (142)
T cd02950 103 AQNLDALVA 111 (142)
T ss_pred HHHHHHHHc
Confidence 555555544
No 199
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=80.35 E-value=5.6 Score=29.54 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=35.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCC------C----CeEEEEcCCCCHHHH-HhcCCccccEEEE--CCe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYD------I----PYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~g------i----~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~ 142 (297)
-++.|+.++|++|+...-.+++.- . ......+|-....++ ...+-..+|++.. +|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 477788899999998876664321 1 233344443333343 4567788998875 665
No 200
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=80.16 E-value=5.8 Score=30.37 Aligned_cols=20 Identities=30% Similarity=0.813 Sum_probs=15.8
Q ss_pred CeEEEEEeCCCccHHHHHHH
Q 022443 86 KEVVLYQYEACPFCNKVKAF 105 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~ 105 (297)
..++.|+.++|++|++....
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~ 35 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRD 35 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHH
Confidence 36778888999999987643
No 201
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=79.62 E-value=3.6 Score=31.83 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=29.6
Q ss_pred CCCccHHHHHHHH----hHCCCCeEEEEcCCCCHHHH-------Hhc---CCccccEEEE--CCeEeechHHH
Q 022443 94 EACPFCNKVKAFL----DYYDIPYKVVEVNPINKKEI-------KWS---EYKKVPILMV--DGEQLVDSSAI 150 (297)
Q Consensus 94 ~~sp~~~~vr~~L----~~~gi~~~~~~v~~~~~~~~-------~~~---p~~~vP~l~~--~g~~l~eS~~I 150 (297)
.|||.|..+.-.+ ....-....+.+.-..+++| ... ....||+|+. ++..|.|..-.
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~~ 108 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEECL 108 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhhc
Confidence 4899999887444 44333445554443344443 232 2366899996 56667765543
No 202
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=78.61 E-value=10 Score=28.57 Aligned_cols=59 Identities=22% Similarity=0.412 Sum_probs=38.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHHHH-hcCCccccEEEE--CCeEeechH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVDSS 148 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~~-~~p~~~vP~l~~--~g~~l~eS~ 148 (297)
.+..|+.++|+.|+.+.-.++.. ++.+ ..+|.... ++. ...-..+|++.. +|+.+..-.
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f--~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~ 93 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKF--VKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDNIV 93 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEE--EEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEEEe
Confidence 46677789999999887777543 3433 34443332 433 456678998876 887765443
No 203
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=77.23 E-value=18 Score=26.70 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=34.9
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCH-HHH-HhcCCccccEEEE--CCeEe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINK-KEI-KWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~-~~~-~~~p~~~vP~l~~--~g~~l 144 (297)
-++.|+.+||+.|+...-.|+.. ++.+-.+++|.... .++ ...+-..+|+++. +|+.+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 56677778999999877666542 34443344442211 233 3456677898765 77654
No 204
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=77.17 E-value=10 Score=27.67 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=35.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCC----CeEEEEcCCCCHHHH-HhcCCccccEEEE--CCe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDI----PYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi----~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~ 142 (297)
-+..|+.++|+.|+...-.++...- .+....+|-...+.+ ....-..+|++.. +|+
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 5777888999999987666644321 244445554433343 3456678898865 664
No 205
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=76.41 E-value=11 Score=30.39 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=36.5
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCCHHHHH-hcC------CccccEEEE--CCeEeec
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK-WSE------YKKVPILMV--DGEQLVD 146 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~~-~~p------~~~vP~l~~--~g~~l~e 146 (297)
-++.|+.+|||.|+...-.+++. +-.++...+|..+.+++. ... -+++|+++. +|+.+..
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 47778889999999887666433 223445555544433432 222 245898875 8877653
No 206
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=75.81 E-value=19 Score=28.60 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=48.1
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHH---HHhcCCccc-c--E-EEECCeEeechHHHHHHHHhh
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE---IKWSEYKKV-P--I-LMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~---~~~~p~~~v-P--~-l~~~g~~l~eS~~I~~yL~~~ 157 (297)
+.++++++...||+|...-.+|....-.-..+..+....+. ++..|...- + + ++.+|..+.+|+|+++-+...
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHC
Confidence 44566666788999999888888887776655554333222 333332211 2 2 223899999999999977665
Q ss_pred c
Q 022443 158 L 158 (297)
Q Consensus 158 ~ 158 (297)
-
T Consensus 87 ~ 87 (137)
T COG3011 87 P 87 (137)
T ss_pred C
Confidence 4
No 207
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=75.51 E-value=7.9 Score=32.91 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=52.5
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHH-hcCCccccEEEECCeEe----echHHHHHHHHh
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQL----VDSSAIIDQLDQ 156 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~-~~p~~~vP~l~~~g~~l----~eS~~I~~yL~~ 156 (297)
-++++|....|.-|...-..|+.+|+--.+..++........ .++--.||.++.||+.+ .|-.+|-.-+.-
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~G 86 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILSG 86 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHcC
Confidence 368999999999999999999999987666555543333333 56778899999999875 355566555543
No 208
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=75.01 E-value=17 Score=28.84 Aligned_cols=74 Identities=22% Similarity=0.335 Sum_probs=54.1
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCC--HHHHH-hcCCccccEEEECCeEeec---hHHHHHHHHhhc
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVD---SSAIIDQLDQKL 158 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~-~~p~~~vP~l~~~g~~l~e---S~~I~~yL~~~~ 158 (297)
.-.++.|..+.|..|..=--.|+.+|+.+..++.+... +..+- .......=+.+++|..+-+ -.+|.+.|++..
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 34689999999999999999999999988888776432 11121 1234556677888877643 478899888876
No 209
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=74.88 E-value=14 Score=28.53 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=33.3
Q ss_pred eEEEEEe-------CCCccHHHHHHHHh----HCC--CCeEEEEcCCCC-----HHHHHhcCC--ccccEEEE--CCeEe
Q 022443 87 EVVLYQY-------EACPFCNKVKAFLD----YYD--IPYKVVEVNPIN-----KKEIKWSEY--KKVPILMV--DGEQL 144 (297)
Q Consensus 87 ~~~Ly~~-------~~sp~~~~vr~~L~----~~g--i~~~~~~v~~~~-----~~~~~~~p~--~~vP~l~~--~g~~l 144 (297)
.++.|+. +|||.|+.+.-.++ +.. +.+-.++++... ..++..... ..+|++.. +|..+
T Consensus 24 vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 24 IFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred EEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCcee
Confidence 4566666 79999997765543 333 444444443211 123433322 37999986 55555
Q ss_pred ech
Q 022443 145 VDS 147 (297)
Q Consensus 145 ~eS 147 (297)
.|.
T Consensus 104 ~~~ 106 (119)
T cd02952 104 VED 106 (119)
T ss_pred cch
Confidence 443
No 210
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=74.25 E-value=7.4 Score=28.53 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=34.6
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCCHHHH-HhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~ 139 (297)
.-++.|+.++|+.|++..-.++.. +-.+....+|-...+++ ...+-..+|++..
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 357778889999999876665433 21234445554444444 3557788998875
No 211
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.83 E-value=88 Score=29.69 Aligned_cols=95 Identities=8% Similarity=-0.043 Sum_probs=58.1
Q ss_pred CCeEEEEEe-CCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCC
Q 022443 85 PKEVVLYQY-EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (297)
Q Consensus 85 ~~~~~Ly~~-~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~ 163 (297)
++.+-|.+. ......+.++.+|++.|+++..+......-++++..+...+=++.-.. .-..+.+||+++|+-+-.
T Consensus 172 ~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~----~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 172 PYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYR----SMNYIARMMEEKYGIPWM 247 (421)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcH----HHHHHHHHHHHHhCCcEE
Confidence 456777653 233456788999999999987544433345566666665554443210 113689999999987654
Q ss_pred CCCCCCcHHHHHHHHHHHhh
Q 022443 164 ADSPSGDDEEKKWRGWVDNH 183 (297)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~ 183 (297)
...|-.-....+|+.-+...
T Consensus 248 ~~~p~Gi~~t~~~l~~ia~~ 267 (421)
T cd01976 248 EYNFFGPTKIAESLRKIAAY 267 (421)
T ss_pred ecccCCHHHHHHHHHHHHHH
Confidence 33344445556666555443
No 212
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=72.72 E-value=7.8 Score=29.56 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=41.0
Q ss_pred CeEEEEEeCC--CccHHHHHHHHhHCCCCe----EEEEcCCCCHHHHH-hcCCccccEEEE--CCeEeec
Q 022443 86 KEVVLYQYEA--CPFCNKVKAFLDYYDIPY----KVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD 146 (297)
Q Consensus 86 ~~~~Ly~~~~--sp~~~~vr~~L~~~gi~~----~~~~v~~~~~~~~~-~~p~~~vP~l~~--~g~~l~e 146 (297)
..+..|+-.+ ||-|..+.-.|++.--.| ....+|....+++. ..+-..+|+++. +|+.+..
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 4577777775 999999988876653332 33344544444544 667889999886 8887654
No 213
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.29 E-value=12 Score=30.10 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=43.7
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCC----eEEEEcCCCCHHHHH-hcCCccccEEEE--CCeEe
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~----~~~~~v~~~~~~~~~-~~p~~~vP~l~~--~g~~l 144 (297)
.-++-|+.+||..|+.+.-.|++.--+ ++...+|..+..++. ...-.-||+++. ||+..
T Consensus 63 PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 63 PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 468889999999999998888876444 344456665555544 667789998886 88776
No 214
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=71.83 E-value=16 Score=30.17 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=36.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCC---CeEEEEcCCCCHHHHHhcCCccccEEEE--CCeEeech
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQLVDS 147 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi---~~~~~~v~~~~~~~~~~~p~~~vP~l~~--~g~~l~eS 147 (297)
.++.|+.++|+.|+.+.-.|+.+-- ....+.|+..........+-..||+|.. +|+.+..-
T Consensus 86 VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 86 VVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEE
Confidence 3555667899999977655543311 2334444433221123557789998886 88776543
No 215
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=71.05 E-value=18 Score=26.17 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=33.2
Q ss_pred CeEEEEEeCCCccHHHHHHHHhH----CC--CCeEEEEcCCCC--HHHH-HhcCCccccEEEE--CCeE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDY----YD--IPYKVVEVNPIN--KKEI-KWSEYKKVPILMV--DGEQ 143 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~----~g--i~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~--~g~~ 143 (297)
.-+.+|+.++|+.|+...-.+.. .. -.+....+|-.. ...+ ...+-..+|.++. +|+.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKF 87 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCe
Confidence 35788888999999988543322 11 223333344322 3333 3446678898865 5543
No 216
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=67.77 E-value=25 Score=25.85 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=32.0
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCC-CHHHH-HhcCCccccEEEE
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPI-NKKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~-~~~~~-~~~p~~~vP~l~~ 139 (297)
-++.|+.+||+.|+...-.+++. ++.+ ..+|.. ....+ ...+-..+|++..
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~--~~vd~~~~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRH--LAIEESSIKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCce--EEEECCCCCHHHHHhcCCeecCEEEE
Confidence 57778889999999887666543 4433 334433 23333 3455678897774
No 217
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=67.02 E-value=23 Score=26.37 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=33.0
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCCC--HHHHH-hcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPIN--KKEIK-WSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~~--~~~~~-~~p~~~vP~l~~ 139 (297)
.-++.|+.++||.|+...-.+... +..+....+|-.. ..... ..+-..+|++..
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 468888899999999887655442 2234444444322 22222 456778998864
No 218
>PTZ00102 disulphide isomerase; Provisional
Probab=65.80 E-value=35 Score=32.53 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=48.1
Q ss_pred CeEEEEEeCCCccHHHHHHHH-------hHCCCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEe-----echHHH
Q 022443 86 KEVVLYQYEACPFCNKVKAFL-------DYYDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL-----VDSSAI 150 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L-------~~~gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l-----~eS~~I 150 (297)
.-++.|+.+||++|++..-.+ ...+-++....+|-....++ ...+-..+|++.. +|..+ .....|
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCHHHH
Confidence 468888899999999775322 22334455555654443343 3455667898865 55432 356789
Q ss_pred HHHHHhhcCCC
Q 022443 151 IDQLDQKLTPK 161 (297)
Q Consensus 151 ~~yL~~~~~~~ 161 (297)
.+|+.+..+..
T Consensus 131 ~~~l~~~~~~~ 141 (477)
T PTZ00102 131 VSWIKKLTGPA 141 (477)
T ss_pred HHHHHHhhCCC
Confidence 99998876543
No 219
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=65.65 E-value=28 Score=24.44 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=35.8
Q ss_pred CeEEEEEeCCCccHHHHHHHHhH----C--CCCeEEEEcCCCCHHH-HHhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDY----Y--DIPYKVVEVNPINKKE-IKWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~----~--gi~~~~~~v~~~~~~~-~~~~p~~~vP~l~~ 139 (297)
.-+.+|+.++|++|+...-.++. . +-.+....++...... ....+-..+|.++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 46888888999999998777654 2 2345555565444333 34556678998875
No 220
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=64.94 E-value=11 Score=33.23 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=19.6
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhH
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDY 108 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~ 108 (297)
+..+++|..+.||||++....+..
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHH
Confidence 456888999999999999777653
No 221
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=64.67 E-value=24 Score=25.44 Aligned_cols=54 Identities=7% Similarity=0.136 Sum_probs=32.3
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----C-CCeEEEEcCCCCHHHHHhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----D-IPYKVVEVNPINKKEIKWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----g-i~~~~~~v~~~~~~~~~~~p~~~vP~l~~ 139 (297)
..+++|+.++|++|+...-.+... + ..+....+|-...+......-..+|.+..
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILF 79 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence 457788889999999876666443 2 22444445533322222223378998875
No 222
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=63.92 E-value=22 Score=25.55 Aligned_cols=56 Identities=20% Similarity=0.394 Sum_probs=34.2
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-----C--CCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-----D--IPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----g--i~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~ 142 (297)
.+..|+.++|+.|+...-.++.. + -.+....+|-.....+ +..+-..+|+++. +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 67788889999999875544322 2 2344555554333333 3455678998774 554
No 223
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=63.52 E-value=11 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=21.2
Q ss_pred CCCeEEEEEeCCCccHHHHHHHHhH
Q 022443 84 VPKEVVLYQYEACPFCNKVKAFLDY 108 (297)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~ 108 (297)
.+..+.+|..+.||||++....+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 3457888999999999999988874
No 224
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=62.59 E-value=37 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=21.3
Q ss_pred HCCCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeEe
Q 022443 108 YYDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 108 ~~gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~l 144 (297)
..++.+-.+++| ...++ ...+-..+|+|.. +|+.+
T Consensus 63 ~~~v~~~kVD~d--~~~~La~~~~I~~iPTl~lfk~G~~v 100 (120)
T cd03065 63 DKGIGFGLVDSK--KDAKVAKKLGLDEEDSIYVFKDDEVI 100 (120)
T ss_pred cCCCEEEEEeCC--CCHHHHHHcCCccccEEEEEECCEEE
Confidence 345544444444 44454 4678889999875 88643
No 225
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=62.40 E-value=8.6 Score=28.53 Aligned_cols=22 Identities=32% Similarity=0.627 Sum_probs=15.8
Q ss_pred CeEEEEEeCCCccHHHHHHHHh
Q 022443 86 KEVVLYQYEACPFCNKVKAFLD 107 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~ 107 (297)
..+.+|+.++||||++....+.
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHH
Confidence 4577888899999999866665
No 226
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=62.18 E-value=40 Score=31.79 Aligned_cols=74 Identities=19% Similarity=0.362 Sum_probs=46.4
Q ss_pred eEEEEEeCCCccHHHHHHHHh-------HCCCCeEEEEcCCCCHHHH-HhcCCccccEEEE--CCeE-------eechHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLD-------YYDIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQ-------LVDSSA 149 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~-------~~gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~--~g~~-------l~eS~~ 149 (297)
.+++|+.+||+.|+...-.+. ..+-++....+|-....++ ...+-..+|++.. +|.. ..+...
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~ 100 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADG 100 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHH
Confidence 578888899999998754333 2332344555554333443 3456667898865 5543 135778
Q ss_pred HHHHHHhhcCC
Q 022443 150 IIDQLDQKLTP 160 (297)
Q Consensus 150 I~~yL~~~~~~ 160 (297)
|.+|+.+..+.
T Consensus 101 l~~~i~~~~~~ 111 (462)
T TIGR01130 101 IVKYMKKQSGP 111 (462)
T ss_pred HHHHHHHhcCC
Confidence 88999887654
No 227
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=62.18 E-value=25 Score=26.75 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=35.4
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCC----eEEEEcCCCCHHHH--HhcCCccccEEEE--CCe
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEI--KWSEYKKVPILMV--DGE 142 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~----~~~~~v~~~~~~~~--~~~p~~~vP~l~~--~g~ 142 (297)
-.++.|+.+||+.|+...-.+++..-. .....||-.....+ +...-..+|+|.. +|.
T Consensus 31 ~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 31 VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 357788889999999887777665322 33344554333333 2345577898875 554
No 228
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=61.63 E-value=12 Score=32.34 Aligned_cols=25 Identities=16% Similarity=0.563 Sum_probs=21.0
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHC
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYY 109 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~ 109 (297)
+..+++|+.+.||||++..--+...
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHH
Confidence 4568899999999999998877764
No 229
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=60.31 E-value=25 Score=25.76 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=32.2
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCC--HHHH-HhcCCccccEEEE
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPIN--KKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~ 139 (297)
.+..|+.++|+.|+...-.++.. +-.+....+|-.. ..++ ...+-..+|+++.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 67888889999999876555443 2123333333322 3333 3456778998875
No 230
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=59.66 E-value=1.5e+02 Score=27.57 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=62.3
Q ss_pred CCCeEEEEEeC-CC-ccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechH-HHHHHHHhhcCC
Q 022443 84 VPKEVVLYQYE-AC-PFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSS-AIIDQLDQKLTP 160 (297)
Q Consensus 84 ~~~~~~Ly~~~-~s-p~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~-~I~~yL~~~~~~ 160 (297)
.++.+-|.+.. .. ....-++.+|+..|+++..+......-++++..+...+=++... +.. .+.++|.++|+-
T Consensus 143 ~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~-----~~~~~~a~~L~e~~gi 217 (398)
T PF00148_consen 143 KPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCP-----EGGPYAAEWLEERFGI 217 (398)
T ss_dssp SSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSC-----CHHHHHHHHHHHHHT-
T ss_pred CCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEecc-----chhhHHHHHHHHHhCC
Confidence 35678887655 33 56778888999999987777655455566665555554433321 123 489999999987
Q ss_pred CCCC-CCCCCcHHHHHHHHHHHhhhh
Q 022443 161 KRKA-DSPSGDDEEKKWRGWVDNHLV 185 (297)
Q Consensus 161 ~~~~-~~~~~~a~~~~~~~~~~~~l~ 185 (297)
+-.. ..|-.-....+|...+.+.+.
T Consensus 218 P~~~~~~p~G~~~t~~~l~~i~~~lg 243 (398)
T PF00148_consen 218 PYLYFPSPYGIEGTDAWLRAIAEALG 243 (398)
T ss_dssp EEEEEC-SBSHHHHHHHHHHHHHHHT
T ss_pred CeeeccccccHHHHHHHHHHHHHHhC
Confidence 6544 455556777777777665443
No 231
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.87 E-value=27 Score=26.16 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=40.1
Q ss_pred EEEeCCCccHHHHHHHHhHCCC--CeEEEEcCCCCHHH-HH---hc--CCccccEEEECCe-EeechHHHHHHHHh
Q 022443 90 LYQYEACPFCNKVKAFLDYYDI--PYKVVEVNPINKKE-IK---WS--EYKKVPILMVDGE-QLVDSSAIIDQLDQ 156 (297)
Q Consensus 90 Ly~~~~sp~~~~vr~~L~~~gi--~~~~~~v~~~~~~~-~~---~~--p~~~vP~l~~~g~-~l~eS~~I~~yL~~ 156 (297)
||+...||+|......++..+. .++.+.+......+ +. ++ -..+.-.+..+|. .+.++.++.+-+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 3556789999999988888875 34545552111111 11 11 1122333345775 89999999987554
No 232
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=58.24 E-value=35 Score=24.96 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=31.9
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-------CCCeEEEEcCCCCHHHH-HhcCCccccEEEE
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-------DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-------gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~ 139 (297)
-+..|+.++||.|++..-.++.. +..+....+|....+.+ ...+-..+|++..
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE
Confidence 46677778999999776555331 33344444443333343 3456678898875
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.94 E-value=29 Score=31.26 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=55.0
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCCHHHHH-hcCCccccEEEE--CCeEeec------hHHHHH
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD------SSAIID 152 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~~~~~~-~~p~~~vP~l~~--~g~~l~e------S~~I~~ 152 (297)
..+++|+.++|+.|....-.|+.. +=.|....+|....+.+. ..+-..+|+++. +|..+-+ -..|-+
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 368889999999999887777543 445777778776666654 778899998874 7765432 347888
Q ss_pred HHHhhcCC
Q 022443 153 QLDQKLTP 160 (297)
Q Consensus 153 yL~~~~~~ 160 (297)
||++..+.
T Consensus 125 ~ld~~~~~ 132 (304)
T COG3118 125 FLDKVLPA 132 (304)
T ss_pred HHHHhcCh
Confidence 88887764
No 234
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.23 E-value=24 Score=30.48 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=18.1
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhHC
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDYY 109 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~ 109 (297)
.-.|.+|+...||||..-+--|+..
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHH
Confidence 3467888889999997665555543
No 235
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=55.91 E-value=2e+02 Score=27.81 Aligned_cols=95 Identities=8% Similarity=0.038 Sum_probs=56.3
Q ss_pred CCeEEEEEeC-CCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCC
Q 022443 85 PKEVVLYQYE-ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (297)
Q Consensus 85 ~~~~~Ly~~~-~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~ 163 (297)
++.|.|.+.. .....+.++.+|+..|+.+..+......-++++..+...+=++... .......+||+++|+-+-.
T Consensus 191 ~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~----~~~~~~A~~L~erfGiP~~ 266 (475)
T PRK14478 191 PYDINILGEYNLAGELWQVKPLLDRLGIRVVACITGDARYDDVASAHRARANMMVCS----GAMINLARKMEERYGIPFF 266 (475)
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCcEEEEEcH----HHHHHHHHHHHHHhCCCEE
Confidence 4667777632 2345578899999999988744332223345555555444333210 1124689999999987654
Q ss_pred CCCCCCcHHHHHHHHHHHhh
Q 022443 164 ADSPSGDDEEKKWRGWVDNH 183 (297)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~ 183 (297)
...+..-.....|+..+...
T Consensus 267 ~~~p~G~~~T~~~l~~la~~ 286 (475)
T PRK14478 267 EGSFYGIEDTSDSLRQIARL 286 (475)
T ss_pred ecCCCcHHHHHHHHHHHHHH
Confidence 43343445666666665544
No 236
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=55.07 E-value=57 Score=24.53 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=36.6
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCe-----EEEEcCCCCHHHHHhcCCccccEEEE--CCeEee
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPY-----KVVEVNPINKKEIKWSEYKKVPILMV--DGEQLV 145 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~-----~~~~v~~~~~~~~~~~p~~~vP~l~~--~g~~l~ 145 (297)
++-|+..||+.|+.+.=.++.+--.| -.+++|. .........-..+|+++. +|..+.
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHHHhcCceEeeEEEEEECCEEEE
Confidence 44466789999999887777654443 3455554 222234556788998885 776543
No 237
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=55.06 E-value=18 Score=28.29 Aligned_cols=66 Identities=14% Similarity=0.308 Sum_probs=32.4
Q ss_pred CCeEEEEEeCCCccHHHHH----HHHhHC-CCCeEEEEcCCCCHHH----HHhcCCccccEEEE---CCeE---eechHH
Q 022443 85 PKEVVLYQYEACPFCNKVK----AFLDYY-DIPYKVVEVNPINKKE----IKWSEYKKVPILMV---DGEQ---LVDSSA 149 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr----~~L~~~-gi~~~~~~v~~~~~~~----~~~~p~~~vP~l~~---~g~~---l~eS~~ 149 (297)
+..+.++.-+|||.|...- -+++.. +|+++.+..| ...+ ...++...||+++. +|+. .+|-..
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd--~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wgerP~ 119 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRD--ENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGERPK 119 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH--HHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-H
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec--CChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCCCH
Confidence 3478899999999998653 334454 6666655443 2222 22478899999986 4444 344444
Q ss_pred HHH
Q 022443 150 IID 152 (297)
Q Consensus 150 I~~ 152 (297)
.++
T Consensus 120 ~~~ 122 (129)
T PF14595_consen 120 EVQ 122 (129)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 238
>PF13728 TraF: F plasmid transfer operon protein
Probab=54.63 E-value=51 Score=28.21 Aligned_cols=54 Identities=20% Similarity=0.440 Sum_probs=37.2
Q ss_pred CeEEEEEeCCCccHHHH----HHHHhHCCCCeEEEEcCCC----------CHHHHHhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVNPI----------NKKEIKWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~v----r~~L~~~gi~~~~~~v~~~----------~~~~~~~~p~~~vP~l~~ 139 (297)
-.+.+|....||||+.- +.+-+..|+++..+.+|.. +.+..+..+-..+|.|+.
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 45788888899999754 5555667999888888732 122233344579998885
No 239
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=54.57 E-value=37 Score=27.60 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=24.6
Q ss_pred CeEEEE-EeCCCccHH-------HHHHHHhHCCCCeEEEEcCCC
Q 022443 86 KEVVLY-QYEACPFCN-------KVKAFLDYYDIPYKVVEVNPI 121 (297)
Q Consensus 86 ~~~~Ly-~~~~sp~~~-------~vr~~L~~~gi~~~~~~v~~~ 121 (297)
+-+.|| +..+||.|+ ++...++..+-|++++.|+..
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 344444 445899886 455666677788999988644
No 240
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=53.51 E-value=52 Score=23.58 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=32.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC----CCCeEEEEcCCCCHHHH-HhcCCccccEEEE
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~ 139 (297)
-+.+|+.++|+.|+...-.+... .-.+....+|....+++ ...+-..+|++..
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 57777789999999876555432 11244444554444443 3445567998765
No 241
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=53.09 E-value=20 Score=25.73 Aligned_cols=54 Identities=11% Similarity=0.199 Sum_probs=33.2
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----CC-CeEEEEcCCCCHHHH-HhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----DI-PYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----gi-~~~~~~v~~~~~~~~-~~~p~~~vP~l~~ 139 (297)
..+.+|+.++|+.|+.....++.. +- .+....+|-....++ ...+-..+|.++.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEE
Confidence 458888999999999865555332 21 234444554333443 3456678998864
No 242
>PLN02309 5'-adenylylsulfate reductase
Probab=52.79 E-value=68 Score=30.92 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=33.0
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----CCCeEEEEcCCC--CHHHHH-hcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPI--NKKEIK-WSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----gi~~~~~~v~~~--~~~~~~-~~p~~~vP~l~~ 139 (297)
..++.|+.+||++|+...-.++.. +..+.+..+|-. .+.... ...-..+|+|+.
T Consensus 367 ~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 367 PWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence 357788899999999876655433 223444444433 222222 346678998875
No 243
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=52.68 E-value=21 Score=29.92 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=35.7
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCC---eEEEEcCCCCHHHHHhcCCccccEEEE--CCeEeec
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV--DGEQLVD 146 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~---~~~~~v~~~~~~~~~~~p~~~vP~l~~--~g~~l~e 146 (297)
.++.|+.++|+.|+.+.-.|+.+--. ...+.++... .....+-..+|+|.. +|..+..
T Consensus 105 VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~--~~~~~~i~~lPTlliyk~G~~v~~ 167 (192)
T cd02988 105 VVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ--CIPNYPDKNLPTILVYRNGDIVKQ 167 (192)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH--hHhhCCCCCCCEEEEEECCEEEEE
Confidence 35556678999999887666554221 2333333211 133567789999986 8876544
No 244
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=51.50 E-value=73 Score=30.74 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=32.2
Q ss_pred eEEEEEeCCCccHHHHHHHHhHC-------CCCeEEEEcCCCCHHHH-HhcCCccccEEEE
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYY-------DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-------gi~~~~~~v~~~~~~~~-~~~p~~~vP~l~~ 139 (297)
.++.|+.+||++|+...-.+++. ++.+-.+++|....... ....-..+|++..
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 46678889999999876655433 23344445553322222 2345668898875
No 245
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=50.36 E-value=2.2e+02 Score=26.73 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=55.7
Q ss_pred CCeEEEEEeC-CCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCC
Q 022443 85 PKEVVLYQYE-ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (297)
Q Consensus 85 ~~~~~Ly~~~-~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~ 163 (297)
++.+-|.+.. .......++.+|++.|+++..+......-+++...+...+=++.-.. ......++|+++|+-+-.
T Consensus 158 ~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~----~~~~~a~~L~~~fGip~~ 233 (410)
T cd01968 158 PYDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAHRAKLNVVQCSK----SMIYLARKMEEKYGIPYI 233 (410)
T ss_pred CCcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhhhCcEEEEEchh----HHHHHHHHHHHHhCCCeE
Confidence 4567776532 23345688999999999877654333334455544444443332110 124579999999987654
Q ss_pred CCCCCCcHHHHHHHHHHHhh
Q 022443 164 ADSPSGDDEEKKWRGWVDNH 183 (297)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~ 183 (297)
...+-.-....+|+..+.+.
T Consensus 234 ~~~p~G~~~t~~~l~~ia~~ 253 (410)
T cd01968 234 EVSFYGIRDTSKSLRNIAEL 253 (410)
T ss_pred ecCcCcHHHHHHHHHHHHHH
Confidence 33344445666666665544
No 246
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=48.64 E-value=60 Score=23.22 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=34.0
Q ss_pred CeEEEEEeCCCccHHHHHHHHhH----CC--CCeEEEEcCCCC-HHH-HHhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDY----YD--IPYKVVEVNPIN-KKE-IKWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~----~g--i~~~~~~v~~~~-~~~-~~~~p~~~vP~l~~ 139 (297)
..+..|+.++|+.|+...-.+.. .+ -.+....+|... .+. ....+-..+|.++.
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 35778889999999877555533 22 235555666444 333 33446678998875
No 247
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=46.86 E-value=76 Score=28.18 Aligned_cols=53 Identities=19% Similarity=0.427 Sum_probs=32.7
Q ss_pred eEEEEEeCCCccHHHHHHHHh----HCCCCeEEEEcCCCC----------HHHHHhcCCccccEEEE
Q 022443 87 EVVLYQYEACPFCNKVKAFLD----YYDIPYKVVEVNPIN----------KKEIKWSEYKKVPILMV 139 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~----~~gi~~~~~~v~~~~----------~~~~~~~p~~~vP~l~~ 139 (297)
.+..|+..+||+|+...-.|+ ..|+.+..+.+|... .+.....+-..+|.++.
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 466677789999997765554 456665556665321 12223445678898874
No 248
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=46.42 E-value=34 Score=28.55 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=22.2
Q ss_pred EEEEEeCCCccHHHH----HHHHhHCCCCeEEEEcC
Q 022443 88 VVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVN 119 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~v----r~~L~~~gi~~~~~~v~ 119 (297)
+..|...+||+|++- +.+.++.|+++..+.+|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 777888999999987 44444557655555554
No 249
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.30 E-value=50 Score=25.61 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=36.5
Q ss_pred CCCccHHHHHH----HHhHCCCCeEEEEcCCCCHHHHH-------hcCC--ccccEEEE-C--CeEeechHHHHHHHHhh
Q 022443 94 EACPFCNKVKA----FLDYYDIPYKVVEVNPINKKEIK-------WSEY--KKVPILMV-D--GEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 94 ~~sp~~~~vr~----~L~~~gi~~~~~~v~~~~~~~~~-------~~p~--~~vP~l~~-~--g~~l~eS~~I~~yL~~~ 157 (297)
+|||.|.++.- +|++..-+...+.++-.+++.|+ ..|. .-||+|.- + +..+.|.......|.+.
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve~ 122 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVEM 122 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHHH
Confidence 48999998754 45555555555555444444332 2222 45788875 3 34566666655555543
No 250
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=42.49 E-value=26 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.2
Q ss_pred EEEEEeCCCccHHHHHHHHhHC
Q 022443 88 VVLYQYEACPFCNKVKAFLDYY 109 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~ 109 (297)
|.+|....||+|....-.++..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678888999999998888764
No 251
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=41.58 E-value=1.4e+02 Score=29.65 Aligned_cols=56 Identities=9% Similarity=0.262 Sum_probs=31.6
Q ss_pred eEEEEEeCCCccHHHHHHH-H------hHCCCCeEEEEcCCCC--H--HH-HHhcCCccccEEEE---CCeE
Q 022443 87 EVVLYQYEACPFCNKVKAF-L------DYYDIPYKVVEVNPIN--K--KE-IKWSEYKKVPILMV---DGEQ 143 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~-L------~~~gi~~~~~~v~~~~--~--~~-~~~~p~~~vP~l~~---~g~~ 143 (297)
.++-|+.+||+.|+..... + ++.+ .+..+.+|..+ . .+ .+..+...+|+++. ||+.
T Consensus 477 VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 477 VMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 3556778899999986443 1 1222 34444444322 1 22 34556677998874 4554
No 252
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=41.37 E-value=46 Score=25.71 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=23.8
Q ss_pred eCCCccHHHHHHHHh-------HCCCCeEEEEcCCCCHH-HHHhcCCccccEEEECC
Q 022443 93 YEACPFCNKVKAFLD-------YYDIPYKVVEVNPINKK-EIKWSEYKKVPILMVDG 141 (297)
Q Consensus 93 ~~~sp~~~~vr~~L~-------~~gi~~~~~~v~~~~~~-~~~~~p~~~vP~l~~~g 141 (297)
..+||.|.+-.-.|. ..|+.+-.+..+..... .+.....-..|++.|.+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~ 89 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPD 89 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCc
Confidence 469999987443333 24554433433322111 12222334577777743
No 253
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=40.99 E-value=1e+02 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=14.0
Q ss_pred eEEEEEeCCCccHHHHHHHHh
Q 022443 87 EVVLYQYEACPFCNKVKAFLD 107 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~ 107 (297)
.+..|+..+||.|++..-.|.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEEECCCChHHHHHhHHHH
Confidence 345555679999997655543
No 254
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=40.60 E-value=3.4e+02 Score=26.00 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred CCeEEEEEe-CCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCC
Q 022443 85 PKEVVLYQY-EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (297)
Q Consensus 85 ~~~~~Ly~~-~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~ 163 (297)
++.+-|.+. ......+.++.+|+..|+++..+......-+++...+...+=++... .....+.++|+++|+-+-.
T Consensus 197 ~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~----~~~~~~a~~L~e~~GiP~~ 272 (456)
T TIGR01283 197 VHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQCS----KSMINLARKMEEKYGIPYF 272 (456)
T ss_pred CCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCcEEEEECH----hHHHHHHHHHHHHcCCCEE
Confidence 456777653 22234568899999999998765443333455665555555443321 1225789999999987654
Q ss_pred CCCCCCcHHHHHHHHHHHhh
Q 022443 164 ADSPSGDDEEKKWRGWVDNH 183 (297)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~ 183 (297)
...+-.-....+|+..+.+.
T Consensus 273 ~~~~~G~~~T~~~L~~Ia~~ 292 (456)
T TIGR01283 273 EGSFYGIEDTSKALRDIADL 292 (456)
T ss_pred ecCCCcHHHHHHHHHHHHHH
Confidence 33344445566666665544
No 255
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=39.07 E-value=3.7e+02 Score=25.99 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=52.5
Q ss_pred CCCCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEee--c--hHHHHHHHHhhc
Q 022443 83 LVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLV--D--SSAIIDQLDQKL 158 (297)
Q Consensus 83 ~~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~--e--S~~I~~yL~~~~ 158 (297)
..++.+.|++--.+.-.+.++.+|+..||..... +....-.++..-+.. ..+. . ....+.||++++
T Consensus 191 ~~~~~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~-lp~~~~~eL~~~~~~---------~~~c~~~P~ls~aa~~Le~~~ 260 (457)
T CHL00073 191 KTHPPLVLFGSLPSTVASQLTLELKRQGIKVSGW-LPSQRYTDLPSLGEG---------VYVCGVNPFLSRTATTLMRRR 260 (457)
T ss_pred CCCCcEEEEEecCcccHHHHHHHHHHcCCeEeEE-eCCCCHHHHHhhCcc---------cEEEEcCcchHHHHHHHHHHh
Confidence 3345788888766888899999999999987633 322233444433311 1111 1 137788999999
Q ss_pred CCCCCC-CCCCCcHHHHHHHHHHHh
Q 022443 159 TPKRKA-DSPSGDDEEKKWRGWVDN 182 (297)
Q Consensus 159 ~~~~~~-~~~~~~a~~~~~~~~~~~ 182 (297)
+-+.+. +.|-.-....+|+.-+..
T Consensus 261 gvp~~~~P~PiGi~~Td~fLr~Ia~ 285 (457)
T CHL00073 261 KCKLIGAPFPIGPDGTRAWIEKICS 285 (457)
T ss_pred CCceeecCCcCcHHHHHHHHHHHHH
Confidence 844322 233334445555555443
No 256
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=38.45 E-value=38 Score=26.24 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=18.9
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhH
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDY 108 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~ 108 (297)
+..|+.|....||+|++..-.++.
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 456888888999999998766554
No 257
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=38.41 E-value=1.7e+02 Score=21.93 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=15.1
Q ss_pred eEEEEEeCCCccHHHHHHHHhH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDY 108 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~ 108 (297)
.+..|...+||.|....-.|..
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~ 49 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMA 49 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHH
Confidence 4556667899999976555543
No 258
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=37.76 E-value=3.4e+02 Score=25.28 Aligned_cols=95 Identities=8% Similarity=0.034 Sum_probs=58.1
Q ss_pred CCCeEEEEEeCC-CccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCC
Q 022443 84 VPKEVVLYQYEA-CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (297)
Q Consensus 84 ~~~~~~Ly~~~~-sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~ 162 (297)
.++.+-|.+... .....-++.+|+..|+.+..+.-....-+++...+.-.+=++... .......++|.++++-+.
T Consensus 159 ~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv~~~----~~~~~~a~~L~~r~GiP~ 234 (406)
T cd01967 159 TPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLVHCS----RSMNYLAREMEERYGIPY 234 (406)
T ss_pred CCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEEECh----HHHHHHHHHHHHhhCCCE
Confidence 356677776543 235688899999999988765543334455655555444433321 123667899999998765
Q ss_pred CCCCCCCcHHHHHHHHHHHh
Q 022443 163 KADSPSGDDEEKKWRGWVDN 182 (297)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~ 182 (297)
....+-.-....+|+..+..
T Consensus 235 ~~~~p~G~~~t~~~l~~l~~ 254 (406)
T cd01967 235 MEVNFYGFEDTSESLRKIAK 254 (406)
T ss_pred EEecCCcHHHHHHHHHHHHH
Confidence 43334444556666666544
No 259
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=36.77 E-value=4e+02 Score=25.72 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=56.8
Q ss_pred CCeEEEEE-eCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCC
Q 022443 85 PKEVVLYQ-YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (297)
Q Consensus 85 ~~~~~Ly~-~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~ 163 (297)
++.+-|.+ +......+.++.+|++.||++.........-++++..+...+=++.-.. ....+.+||+++|+-+-.
T Consensus 207 ~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~lniv~~~~----~~~~~A~~Le~~fGiP~~ 282 (466)
T TIGR01282 207 PYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLNLIHCYR----SMNYISRHMEEKYGIPWM 282 (466)
T ss_pred CCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEChH----HHHHHHHHHHHHhCCceE
Confidence 45677765 3334567889999999999987544332334556666666655444211 124689999999987654
Q ss_pred CCCCCCcHHHHHHHHHHHh
Q 022443 164 ADSPSGDDEEKKWRGWVDN 182 (297)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~ 182 (297)
...+-.-....+|+.-+..
T Consensus 283 ~~~~~Gi~~T~~~Lr~ia~ 301 (466)
T TIGR01282 283 EYNFFGPTKIAESLRKIAE 301 (466)
T ss_pred eCCCCCHHHHHHHHHHHHH
Confidence 3333334445555555443
No 260
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=36.00 E-value=88 Score=23.98 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=34.7
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCe----EEEEcCCCCHHHHH-hcCCccccEEEE--CCeEe
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPY----KVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~----~~~~v~~~~~~~~~-~~p~~~vP~l~~--~g~~l 144 (297)
+.=|+..|||.|+..--.|++.--.| ....+|..+-+++. ...-...|+.+- +|+++
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 44466789999999977777654332 22334444444443 345556787664 77765
No 261
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.49 E-value=3.9e+02 Score=25.27 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=61.0
Q ss_pred CCeEEEEEeCCC------ccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhc
Q 022443 85 PKEVVLYQYEAC------PFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 85 ~~~~~Ly~~~~s------p~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~ 158 (297)
++.+-|.+.... .....++.+|+..|++...+.-....-++++..+...+=++... .....+.++|+++|
T Consensus 161 ~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~~----~~g~~~a~~Lee~~ 236 (426)
T cd01972 161 EDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANVTLCL----DLGYYLGAALEQRF 236 (426)
T ss_pred CCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECh----hHHHHHHHHHHHHh
Confidence 456777775543 34688999999999988766544344455665565555444321 12357899999999
Q ss_pred CCCCCC-CCCCCcHHHHHHHHHHHhhh
Q 022443 159 TPKRKA-DSPSGDDEEKKWRGWVDNHL 184 (297)
Q Consensus 159 ~~~~~~-~~~~~~a~~~~~~~~~~~~l 184 (297)
+-+-.. ..|-.-....+|+..+.+.+
T Consensus 237 GiP~~~~~~P~G~~~T~~~l~~ia~~~ 263 (426)
T cd01972 237 GVPEIKAPQPYGIEATDKWLREIAKVL 263 (426)
T ss_pred CCCeEecCCccCHHHHHHHHHHHHHHh
Confidence 876542 23444566677776665543
No 262
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=34.98 E-value=3.7e+02 Score=24.82 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=60.8
Q ss_pred CCCeEEEEEeCCC-c-cHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCC
Q 022443 84 VPKEVVLYQYEAC-P-FCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (297)
Q Consensus 84 ~~~~~~Ly~~~~s-p-~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~ 161 (297)
.++.+.|.+...- + ....++.+|+..|+.+..+.-....-+++...+...+=++.-. .......++|.++|+-+
T Consensus 151 ~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~~----~~g~~~a~~l~~~~g~p 226 (399)
T cd00316 151 EPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNLVLCR----ESGLYLARYLEEKYGIP 226 (399)
T ss_pred CCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEEEecH----hHHHHHHHHHHHHhCCC
Confidence 3556777765533 2 6788999999999988766543234445554454444333321 13466889999998866
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhh
Q 022443 162 RKADSPSGDDEEKKWRGWVDNHL 184 (297)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~l 184 (297)
.....|-.-....+|+..+.+.+
T Consensus 227 ~~~~~p~G~~~t~~~l~~i~~~~ 249 (399)
T cd00316 227 YILINPIGLEATDAFLRKLAELF 249 (399)
T ss_pred eEEeCCcCHHHHHHHHHHHHHHh
Confidence 54333555677777777766543
No 263
>PTZ00062 glutaredoxin; Provisional
Probab=34.69 E-value=2.6e+02 Score=23.68 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=42.8
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCC---eEEEEcCCCCHHHHHhcCCccccEEEE--CCeEe-----echHHHHHHHHh
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL-----VDSSAIIDQLDQ 156 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~---~~~~~v~~~~~~~~~~~p~~~vP~l~~--~g~~l-----~eS~~I~~yL~~ 156 (297)
.+..|+.+|||-|+.+.-+|.++--. +....|+.. ..-..||+++. +|+.+ .+...+..++.+
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~ 92 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSFIRG 92 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------cCcccceEEEEEECCEEEeeeeCCCHHHHHHHHHH
Confidence 35555578999999998888766332 333444422 55678997774 77654 245667777766
Q ss_pred hcC
Q 022443 157 KLT 159 (297)
Q Consensus 157 ~~~ 159 (297)
.+.
T Consensus 93 ~~~ 95 (204)
T PTZ00062 93 WAQ 95 (204)
T ss_pred HcC
Confidence 665
No 264
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=33.94 E-value=56 Score=26.61 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=25.4
Q ss_pred eEEEEEeCCCccHHHHHHHH----hHC-CCCeEEEEcCCC
Q 022443 87 EVVLYQYEACPFCNKVKAFL----DYY-DIPYKVVEVNPI 121 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L----~~~-gi~~~~~~v~~~ 121 (297)
.|++|....||||......| +.. ++.++.+.+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 47899999999997665444 444 788888777644
No 265
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=33.68 E-value=47 Score=22.23 Aligned_cols=63 Identities=16% Similarity=0.044 Sum_probs=30.9
Q ss_pred EEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIID 152 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~ 152 (297)
++||....-.-+..++-+|+..||++.+..-....- .-..|....+-|.+.....-+...|++
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--~g~~g~~~~~~v~V~~~d~~~A~~il~ 63 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY--AGEPGTGGQVEVYVPEEDYERAREILE 63 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----S--SSSEEEEEEGGGHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh--hcccCccCceEEEECHHHHHHHHHHHH
Confidence 467887777778999999999999998775442211 001223222555554444555555544
No 266
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=33.67 E-value=45 Score=25.21 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=21.6
Q ss_pred ccEEEE-CCeEeechHHHHHHHHhhcC
Q 022443 134 VPILMV-DGEQLVDSSAIIDQLDQKLT 159 (297)
Q Consensus 134 vP~l~~-~g~~l~eS~~I~~yL~~~~~ 159 (297)
+|.++. +|..++.|..|++++..++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 466664 99999999999999887764
No 267
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=32.52 E-value=1.6e+02 Score=25.82 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=36.2
Q ss_pred CeEEEEEeCCCccHHH----HHHHHhHCCCCeEEEEcCCCCH----------HHHHhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNK----VKAFLDYYDIPYKVVEVNPINK----------KEIKWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~----vr~~L~~~gi~~~~~~v~~~~~----------~~~~~~p~~~vP~l~~ 139 (297)
..+.+|+-..||||++ ++.+-+..|++...+.+|.... +....-+-..+|.|+.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 4577787888999986 4566677899988888874221 1122334467888774
No 268
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.62 E-value=4.6e+02 Score=25.67 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=60.5
Q ss_pred CCCeEEEEEeC-----CCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhc
Q 022443 84 VPKEVVLYQYE-----ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 84 ~~~~~~Ly~~~-----~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~ 158 (297)
.++.+-|.+.. .....+-++.+|+..|+.+..+.-....-++++..|...+=++.-.. . ...+++||+++|
T Consensus 162 ~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~~~--~--g~~~A~~Le~~f 237 (513)
T CHL00076 162 DKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPYRE--V--GLMTAKYLEKEF 237 (513)
T ss_pred CCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEechh--h--hHHHHHHHHHHh
Confidence 34567787533 22456889999999999988655433344556666666665554211 1 147899999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhh
Q 022443 159 TPKRKADSPSGDDEEKKWRGWVDNHL 184 (297)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~l 184 (297)
+-+.....|-.-.....|+.-+.+.+
T Consensus 238 giP~i~~~PiGi~~T~~fLr~la~~l 263 (513)
T CHL00076 238 GMPYISTTPMGIVDTAECIRQIQKIL 263 (513)
T ss_pred CCCeEeeccCCHHHHHHHHHHHHHHh
Confidence 87654334444455566665555444
No 269
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=31.12 E-value=77 Score=25.94 Aligned_cols=61 Identities=18% Similarity=0.398 Sum_probs=34.5
Q ss_pred eEEEEEeCCCccHHHHHH-------HHhHCCCCeEEEEcCCCCHHHHH---------hcCCccccEEEE---CCeEeech
Q 022443 87 EVVLYQYEACPFCNKVKA-------FLDYYDIPYKVVEVNPINKKEIK---------WSEYKKVPILMV---DGEQLVDS 147 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~-------~L~~~gi~~~~~~v~~~~~~~~~---------~~p~~~vP~l~~---~g~~l~eS 147 (297)
-+.-.++.+|.+|+.... +.+..+-.|..+.+|..+++++. +++.|.-|.-+. +|+.++.+
T Consensus 40 Ifl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 40 IFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred EEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeee
Confidence 345556789999997643 33344446777778877776631 458899997664 88887753
No 270
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=30.90 E-value=83 Score=18.92 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=23.2
Q ss_pred hcCCccccEEEECCeEeechHHHHHHHHh
Q 022443 128 WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (297)
Q Consensus 128 ~~p~~~vP~l~~~g~~l~eS~~I~~yL~~ 156 (297)
+--.|.+|....++..++...+|.+|+++
T Consensus 21 ~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 21 LIHEGELPAYRVGRHYRIPREDVDEYLEQ 49 (49)
T ss_pred HHHcCCCCeEEeCCeEEEeHHHHHHHHhC
Confidence 34467888887788889999999999863
No 271
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=30.72 E-value=1.1e+02 Score=23.78 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=26.8
Q ss_pred HHHhHCCCCeEEEEcCCCCH-----HH----HHhcCCccccEEEECCeEee
Q 022443 104 AFLDYYDIPYKVVEVNPINK-----KE----IKWSEYKKVPILMVDGEQLV 145 (297)
Q Consensus 104 ~~L~~~gi~~~~~~v~~~~~-----~~----~~~~p~~~vP~l~~~g~~l~ 145 (297)
-.|+..|++++...+..... +. +...+...+|++++||+.+.
T Consensus 34 ~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~ 84 (123)
T PF06953_consen 34 DWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVK 84 (123)
T ss_dssp HHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEE
T ss_pred HHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEE
Confidence 34578899998888753221 11 44679999999999998753
No 272
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=29.96 E-value=50 Score=25.98 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=17.8
Q ss_pred CCeEEEEEeCCCccHHHHHHHHh
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLD 107 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~ 107 (297)
+..|++|....||+|.+....+.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHHh
Confidence 45799999999999999866553
No 273
>PTZ00102 disulphide isomerase; Provisional
Probab=27.52 E-value=1.8e+02 Score=27.68 Aligned_cols=73 Identities=10% Similarity=0.203 Sum_probs=40.4
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCC------eEEEEcCCCCHHH-HHhcCCccccEEEE--CC-eE---e---echHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIP------YKVVEVNPINKKE-IKWSEYKKVPILMV--DG-EQ---L---VDSSAI 150 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~------~~~~~v~~~~~~~-~~~~p~~~vP~l~~--~g-~~---l---~eS~~I 150 (297)
.++.|+.+||+.|+...-.++...-. .....+|...... .....-..+|+++. +| +. + .....|
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l 457 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGF 457 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHH
Confidence 56677789999999887776553211 2233344322221 22234456787764 33 22 1 234567
Q ss_pred HHHHHhhcC
Q 022443 151 IDQLDQKLT 159 (297)
Q Consensus 151 ~~yL~~~~~ 159 (297)
.++|.+...
T Consensus 458 ~~~i~~~~~ 466 (477)
T PTZ00102 458 KEFVNKHAT 466 (477)
T ss_pred HHHHHHcCC
Confidence 777777654
No 274
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=27.46 E-value=1.8e+02 Score=21.71 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=31.0
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHCCCC-------eEEEEcC--CCCHHH-HHhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYYDIP-------YKVVEVN--PINKKE-IKWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~-------~~~~~v~--~~~~~~-~~~~p~~~vP~l~~ 139 (297)
.-+..|+.+||+.|+...-.++...-. +....+| .....+ .+..+-..+|++..
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 357778889999999776655432111 2223333 222223 33456678898875
No 275
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=26.79 E-value=1.3e+02 Score=23.92 Aligned_cols=56 Identities=9% Similarity=0.166 Sum_probs=32.0
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCCC----eEEEEcCCCCHHHHH--hcCCccccEE-EE-CCe
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK--WSEYKKVPIL-MV-DGE 142 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi~----~~~~~v~~~~~~~~~--~~p~~~vP~l-~~-~g~ 142 (297)
-+.=|+.+||+.|+..--.|++..-. .....+|..+.+++. ..-.+..|++ +. +|+
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 35567778999999998777765322 233444544444443 2333355666 32 665
No 276
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=26.12 E-value=1e+02 Score=25.82 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=23.4
Q ss_pred eEEEEEeCCCccHHHHHHHH----hHCCCCeEEEEcC
Q 022443 87 EVVLYQYEACPFCNKVKAFL----DYYDIPYKVVEVN 119 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L----~~~gi~~~~~~v~ 119 (297)
.|.+|+...||||.-...-| ...+++++.+.+.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 57899999999998764444 4556666666553
No 277
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=25.81 E-value=78 Score=26.04 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=14.9
Q ss_pred EEEEEeCCCccHHHHHHHHh
Q 022443 88 VVLYQYEACPFCNKVKAFLD 107 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~ 107 (297)
|.+|....||||......|.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 46888899999996554443
No 278
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=25.72 E-value=79 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=19.1
Q ss_pred CCeEEEEEeCCCccHHHHHHHHhH
Q 022443 85 PKEVVLYQYEACPFCNKVKAFLDY 108 (297)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~ 108 (297)
+..|+.|....||+|.+..-.+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 456888888899999998777653
No 279
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.29 E-value=5.8e+02 Score=24.06 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCeEEEEE-eCCCc-cHHHHHHHHhHCCCCeEEEEcC-----C-------------CCHHHHHhcCCccccEEEECCeEe
Q 022443 85 PKEVVLYQ-YEACP-FCNKVKAFLDYYDIPYKVVEVN-----P-------------INKKEIKWSEYKKVPILMVDGEQL 144 (297)
Q Consensus 85 ~~~~~Ly~-~~~sp-~~~~vr~~L~~~gi~~~~~~v~-----~-------------~~~~~~~~~p~~~vP~l~~~g~~l 144 (297)
++.+.|.+ ++..+ ....++.+|+..|+++..+.-. . ..-++++..+...+=++. ..
T Consensus 155 ~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~-~~--- 230 (428)
T cd01965 155 NGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIAL-GE--- 230 (428)
T ss_pred CCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEE-Ch---
Confidence 45677664 33334 4799999999999998776421 0 112334444444442222 11
Q ss_pred echHHHHHHHHhhcCCCCCCC-CCCCcHHHHHHHHHHHhhh
Q 022443 145 VDSSAIIDQLDQKLTPKRKAD-SPSGDDEEKKWRGWVDNHL 184 (297)
Q Consensus 145 ~eS~~I~~yL~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~l 184 (297)
.......+||+++|+-+-... .|-.-....+|+..+.+.+
T Consensus 231 ~~~~~~a~~L~e~~GiP~~~~~~p~G~~~t~~~l~~l~~~~ 271 (428)
T cd01965 231 YSGRKAAKALEEKFGVPYILFPTPIGLKATDEFLRALSKLS 271 (428)
T ss_pred hhhHHHHHHHHHHHCCCeeecCCCcChHHHHHHHHHHHHHH
Confidence 244688999999998765432 2545566677776665543
No 280
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=25.26 E-value=3.4e+02 Score=21.39 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=13.2
Q ss_pred eEEEEEeCCCccHHHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAFL 106 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L 106 (297)
.+..|..++||+|+...-.|
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred EEEEEECCcCHHHHHHHHHH
Confidence 34556677999998754333
No 281
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=25.19 E-value=1.6e+02 Score=20.74 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=15.3
Q ss_pred eEEEEEeCCCccHHHHHHHHhH
Q 022443 87 EVVLYQYEACPFCNKVKAFLDY 108 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~ 108 (297)
.+..|...+||.|.+..-.+..
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred EEEEeecccChhHHHHhHHHHH
Confidence 5667777899999866544443
No 282
>PF12728 HTH_17: Helix-turn-helix domain
Probab=24.87 E-value=1.3e+02 Score=18.67 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=25.0
Q ss_pred hcCCccccEEEECCeEeechHHHHHHHHhh
Q 022443 128 WSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (297)
Q Consensus 128 ~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~ 157 (297)
+--.+.+|.+..++...+.-.+|.+|+.++
T Consensus 21 ~~~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 21 WIRQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHHcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 445678988888888999999999999864
No 283
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.57 E-value=77 Score=22.38 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred CccHHHHHHHHhHCCCCeEEEEc
Q 022443 96 CPFCNKVKAFLDYYDIPYKVVEV 118 (297)
Q Consensus 96 sp~~~~vr~~L~~~gi~~~~~~v 118 (297)
-.|++|+..+|+..|++|+...-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecC
Confidence 37999999999999999998753
No 284
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=24.14 E-value=8.1e+02 Score=26.00 Aligned_cols=95 Identities=9% Similarity=0.098 Sum_probs=53.7
Q ss_pred CCeEEEEEe-CCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECCeEeechHHHHHHHHhhcCCCCC
Q 022443 85 PKEVVLYQY-EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (297)
Q Consensus 85 ~~~~~Ly~~-~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~~~~ 163 (297)
++.+-|.+. ......+.++.+|+..||+...+......-+++...+...+=++.-. . ....+++||+++|+-+-.
T Consensus 184 ~~~VNliG~~~~~gd~~elk~lL~~~Gi~v~~~~~g~~t~eei~~~~~A~lniv~~~-~---~~~~~A~~Le~~fGiP~~ 259 (917)
T PRK14477 184 PYDINLIGEYNIAGDLWGMLPLFDRLGIRVLSCISGDAKFEELRYAHRAKLNVIICS-K---SLTNLARKMEKRYGIPYL 259 (917)
T ss_pred CCcEEEECCCCCcchHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCCEEEEEcH-H---HHHHHHHHHHHHhCCCEE
Confidence 456777653 23344568899999999996433322223345555554444333211 0 114689999999987654
Q ss_pred CCCCCCcHHHHHHHHHHHhh
Q 022443 164 ADSPSGDDEEKKWRGWVDNH 183 (297)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~ 183 (297)
...+-.-....+|+..+...
T Consensus 260 ~~~p~Gi~~T~~~L~~ia~~ 279 (917)
T PRK14477 260 EESFYGMTDTAKALRDIARE 279 (917)
T ss_pred ecCccCHHHHHHHHHHHHHH
Confidence 33344445556666655543
No 285
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.60 E-value=36 Score=26.10 Aligned_cols=61 Identities=11% Similarity=0.045 Sum_probs=40.6
Q ss_pred cHHHHHHHHhHCCCCeEEEEcCCCC----HHHHHhcCCccccEEEE---CCeEeechHHHHHHHHhhc
Q 022443 98 FCNKVKAFLDYYDIPYKVVEVNPIN----KKEIKWSEYKKVPILMV---DGEQLVDSSAIIDQLDQKL 158 (297)
Q Consensus 98 ~~~~vr~~L~~~gi~~~~~~v~~~~----~~~~~~~p~~~vP~l~~---~g~~l~eS~~I~~yL~~~~ 158 (297)
|-.-++.+++..|++.+.+.++... .......-.|.+|+++| -=...-|...|++||.++.
T Consensus 24 fP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 24 FPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 5567788888899988876655211 11112344688898887 3345667888999998764
No 286
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.38 E-value=1.7e+02 Score=28.22 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=50.3
Q ss_pred CCccHHHHHHHHhHC--CCC-eEEEEcC--CCCHHHH-----Hhc--CCccccEEE----E---CCeEeechHHHHHHHH
Q 022443 95 ACPFCNKVKAFLDYY--DIP-YKVVEVN--PINKKEI-----KWS--EYKKVPILM----V---DGEQLVDSSAIIDQLD 155 (297)
Q Consensus 95 ~sp~~~~vr~~L~~~--gi~-~~~~~v~--~~~~~~~-----~~~--p~~~vP~l~----~---~g~~l~eS~~I~~yL~ 155 (297)
.|||-.|+.++..++ ++| |.++.+- |.++++| +.| -..+-|++- | .|.-|++.++-++|..
T Consensus 3 ~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~~ 82 (452)
T cd05295 3 DCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYAE 82 (452)
T ss_pred CCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHHH
Confidence 599999999999886 444 7777663 4445542 233 457889986 3 4567999999999999
Q ss_pred hhcCCCC
Q 022443 156 QKLTPKR 162 (297)
Q Consensus 156 ~~~~~~~ 162 (297)
.-|+-..
T Consensus 83 ~yyg~~s 89 (452)
T cd05295 83 SYYGITS 89 (452)
T ss_pred HHhCccc
Confidence 9998644
No 287
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=23.11 E-value=1.9e+02 Score=27.96 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=37.4
Q ss_pred CCCeEEEEEeCCCccHHHHHHHHhHCCCCeEEEEcCCCCHHHHHhcCCccccEEEECC
Q 022443 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDG 141 (297)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~g 141 (297)
.+..++++..-+|...+.+..+|+...++|+..... +++.+|+|.+++
T Consensus 59 Dp~VLVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~----------~kg~lP~LT~~~ 106 (487)
T PF12062_consen 59 DPKVLVFVESQYSQLGQDIVAILESNRFKYKVEIAS----------GKGDLPVLTDND 106 (487)
T ss_pred CCeEEEEEeeccchhhHHHHHHHHhceeeEEEEEcc----------CCCCCCccccCC
Confidence 345566666668999999999999999999877663 467888888753
No 288
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.92 E-value=1e+02 Score=25.00 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=21.0
Q ss_pred EEEEEeCCCccHHHHHHHHh----HCCCCeEEEEc
Q 022443 88 VVLYQYEACPFCNKVKAFLD----YYDIPYKVVEV 118 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~----~~gi~~~~~~v 118 (297)
|.+|....||||......|+ +.++.++.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 46888899999987655444 44665555544
No 289
>PRK09266 hypothetical protein; Provisional
Probab=22.82 E-value=1.6e+02 Score=25.76 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=41.5
Q ss_pred HHHHHhHCCCCeEEEEcCCCCH---HHHH-hc-CCccccEEEECCeEeechHHHHHHHHhhcCC
Q 022443 102 VKAFLDYYDIPYKVVEVNPINK---KEIK-WS-EYKKVPILMVDGEQLVDSSAIIDQLDQKLTP 160 (297)
Q Consensus 102 vr~~L~~~gi~~~~~~v~~~~~---~~~~-~~-p~~~vP~l~~~g~~l~eS~~I~~yL~~~~~~ 160 (297)
+...++..|++++...++..+- +++. .| -.+-+|+..+||..+.+...|.+.|.+.|..
T Consensus 197 ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 197 LQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHh
Confidence 3445667799998888875432 2332 33 5688999999998887667888888877743
No 290
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=22.43 E-value=3.1e+02 Score=25.05 Aligned_cols=71 Identities=25% Similarity=0.431 Sum_probs=41.2
Q ss_pred EEEEeCCCccHHHHHHHHhHCCCCeE-------EE--EcCCCCHHHHH-hcCCccccEEEE--CCeEee-------chHH
Q 022443 89 VLYQYEACPFCNKVKAFLDYYDIPYK-------VV--EVNPINKKEIK-WSEYKKVPILMV--DGEQLV-------DSSA 149 (297)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gi~~~-------~~--~v~~~~~~~~~-~~p~~~vP~l~~--~g~~l~-------eS~~ 149 (297)
+=|+..||||+++..-++++.--.|. ++ .||-.....+. ..--.+-|+|.+ +|..+. .-.+
T Consensus 18 v~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVea 97 (375)
T KOG0912|consen 18 VNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEA 97 (375)
T ss_pred eeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHH
Confidence 34566799999999988887633221 12 23322222332 334456677775 776554 2356
Q ss_pred HHHHHHhhcC
Q 022443 150 IIDQLDQKLT 159 (297)
Q Consensus 150 I~~yL~~~~~ 159 (297)
.++|+..+..
T Consensus 98 L~efi~kq~s 107 (375)
T KOG0912|consen 98 LIEFIEKQLS 107 (375)
T ss_pred HHHHHHHHhc
Confidence 7777766543
No 291
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=22.40 E-value=3.5e+02 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=13.0
Q ss_pred EEEEEeCCCccHHHHHHHH
Q 022443 88 VVLYQYEACPFCNKVKAFL 106 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L 106 (297)
+..|...+||.|+...-.|
T Consensus 21 ll~F~atwC~~C~~~~p~l 39 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKL 39 (132)
T ss_pred EEEEECCCCchHHHHHHHH
Confidence 4445567899999865444
No 292
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=21.58 E-value=82 Score=24.01 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=22.8
Q ss_pred hCCCCcccCCCCChhhHHHHHHHHHHHhhcCCCccccc
Q 022443 259 LNGREFLGMCFKYLISSSTCKHLINFVHNLSTNKSIFL 296 (297)
Q Consensus 259 L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~ 296 (297)
|+.++|++....|++.+..+ |..-+ .+.++++|||
T Consensus 40 l~k~KflVp~~~tv~~f~~~--irk~l-~l~~~~slfl 74 (112)
T cd01611 40 LDKKKYLVPSDLTVGQFVYI--IRKRI-QLRPEKALFL 74 (112)
T ss_pred ccCceEEecCCCCHHHHHHH--HHHHh-CCCccceEEE
Confidence 45567888777888777654 34443 3667777775
No 293
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=21.57 E-value=3.5e+02 Score=23.91 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=35.9
Q ss_pred CeEEEEEeCCCccHHHH----HHHHhHCCCCeEEEEcCCCCHH----------HHHhcCCccccEEEE
Q 022443 86 KEVVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVNPINKK----------EIKWSEYKKVPILMV 139 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~v----r~~L~~~gi~~~~~~v~~~~~~----------~~~~~p~~~vP~l~~ 139 (297)
..+.+|+-..||||++- +.+-+..|++...+.+|...-+ ..+.-+-..+|.|+.
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 45777777889999865 4455678999888888743211 122334467888875
No 294
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=21.41 E-value=75 Score=22.10 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=31.4
Q ss_pred eEEEEEeCCCccHHHHHHHHhH-------CCCCeEEEEcCCCCHHH-HHhcCCccccEEEE
Q 022443 87 EVVLYQYEACPFCNKVKAFLDY-------YDIPYKVVEVNPINKKE-IKWSEYKKVPILMV 139 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~-------~gi~~~~~~v~~~~~~~-~~~~p~~~vP~l~~ 139 (297)
-++.++..+|++|++....+-. .+-.|..+.+|...... ......+ +|.++.
T Consensus 20 vlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~-~P~~~~ 79 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQG-YPTFFF 79 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCS-SSEEEE
T ss_pred EEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCcc-CCEEEE
Confidence 5777788999999988655422 23446677776544432 3222233 887763
No 295
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=21.37 E-value=2.9e+02 Score=22.60 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=13.4
Q ss_pred EEEEEeCCCccHHHHHHHHh
Q 022443 88 VVLYQYEACPFCNKVKAFLD 107 (297)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~ 107 (297)
+..|...+||+|++-.-.|.
T Consensus 72 vv~FwatwC~~C~~e~p~l~ 91 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLN 91 (185)
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 44456679999987654443
No 296
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=21.12 E-value=3.2e+02 Score=25.54 Aligned_cols=72 Identities=10% Similarity=0.194 Sum_probs=39.2
Q ss_pred CeEEEEEeCCCccHHHHHHHHhHC-----CC--CeEEEEcCCCCHHHHHhcCCccccEEEE--CCeE-----e---echH
Q 022443 86 KEVVLYQYEACPFCNKVKAFLDYY-----DI--PYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQ-----L---VDSS 148 (297)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~-----gi--~~~~~~v~~~~~~~~~~~p~~~vP~l~~--~g~~-----l---~eS~ 148 (297)
..++.|+.+||+.|....-.++.. ++ .+....+|........ ..-..+|.+.. +|.. . ....
T Consensus 366 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~ 444 (462)
T TIGR01130 366 DVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLE 444 (462)
T ss_pred eEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC-CCccccCEEEEEeCCCCcCceEecCcCCHH
Confidence 356678888999998776655542 22 2344444432211111 34467787775 3321 1 2455
Q ss_pred HHHHHHHhhc
Q 022443 149 AIIDQLDQKL 158 (297)
Q Consensus 149 ~I~~yL~~~~ 158 (297)
.|.++|.+..
T Consensus 445 ~l~~~l~~~~ 454 (462)
T TIGR01130 445 DFSKFIAKHA 454 (462)
T ss_pred HHHHHHHhcC
Confidence 6677766554
No 297
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=21.10 E-value=77 Score=24.87 Aligned_cols=19 Identities=26% Similarity=0.509 Sum_probs=14.6
Q ss_pred eEEEEEeCCCccHHHHHHH
Q 022443 87 EVVLYQYEACPFCNKVKAF 105 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~ 105 (297)
-+..++..+||+|.+....
T Consensus 26 vmv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 26 LMVIHHLEDCPHSQALKKA 44 (130)
T ss_pred EEEEEeCCcCHhHHHHHHH
Confidence 4666778899999987654
No 298
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=20.68 E-value=3.2e+02 Score=19.32 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=33.9
Q ss_pred eEEEEEeCCCccHHHHHHHHhHCCC----CeEEEEcCCCCHHH-HHhcCCc--cccEEEE
Q 022443 87 EVVLYQYEACPFCNKVKAFLDYYDI----PYKVVEVNPINKKE-IKWSEYK--KVPILMV 139 (297)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gi----~~~~~~v~~~~~~~-~~~~p~~--~vP~l~~ 139 (297)
.+.+|..++|+.|...+-.+++..- .+....+|....+. ....+-. .+|++..
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEE
Confidence 5677777889899988887766422 24555566544333 3333444 8998885
No 299
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=20.43 E-value=2.3e+02 Score=21.45 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=26.5
Q ss_pred CeEEEEEe--CCCccHHHHHHHHh-------HCCCCeEEEEcCCCCHHH---HH-hcCCccccEEEEC
Q 022443 86 KEVVLYQY--EACPFCNKVKAFLD-------YYDIPYKVVEVNPINKKE---IK-WSEYKKVPILMVD 140 (297)
Q Consensus 86 ~~~~Ly~~--~~sp~~~~vr~~L~-------~~gi~~~~~~v~~~~~~~---~~-~~p~~~vP~l~~~ 140 (297)
+.+.|+.+ .+||.|..-.-.|. ..|+.+-.+..+ .... +. ..+....|++.|.
T Consensus 23 k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--~~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--SPFSHKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHhcccCCCceEEECC
Confidence 44555544 47999876433333 345544444444 2222 22 2234566777653
Done!