Query 022445
Match_columns 297
No_of_seqs 132 out of 1416
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 3.4E-40 7.4E-45 286.9 28.7 285 1-285 9-296 (302)
2 PTZ00343 triose or hexose phos 100.0 2.2E-37 4.7E-42 273.2 32.4 282 1-283 56-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 4.7E-35 1E-39 248.9 12.0 283 1-289 24-314 (316)
4 PLN00411 nodulin MtN21 family 100.0 7.3E-30 1.6E-34 224.5 30.2 276 5-287 24-333 (358)
5 KOG1444 Nucleotide-sugar trans 100.0 2.7E-28 5.9E-33 203.1 23.2 285 2-290 20-308 (314)
6 PRK11689 aromatic amino acid e 100.0 4.9E-27 1.1E-31 203.4 29.7 255 10-284 20-289 (295)
7 PRK11272 putative DMT superfam 100.0 1.5E-26 3.3E-31 200.1 31.7 261 9-284 23-287 (292)
8 TIGR00950 2A78 Carboxylate/Ami 100.0 8.7E-27 1.9E-31 198.6 29.0 252 9-278 4-260 (260)
9 PRK11453 O-acetylserine/cystei 100.0 1.1E-25 2.3E-30 195.4 29.7 263 9-285 19-290 (299)
10 PF08449 UAA: UAA transporter 100.0 1.3E-25 2.8E-30 195.2 29.6 271 8-287 14-302 (303)
11 PF06027 DUF914: Eukaryotic pr 100.0 3.8E-26 8.3E-31 197.0 24.4 273 7-287 26-310 (334)
12 PRK10532 threonine and homoser 100.0 1.4E-25 3E-30 194.2 27.8 253 9-284 27-283 (293)
13 PRK15430 putative chlorampheni 99.9 6.5E-25 1.4E-29 190.2 29.8 260 10-286 24-289 (296)
14 KOG1443 Predicted integral mem 99.9 3.3E-26 7.1E-31 188.1 17.5 280 1-282 23-315 (349)
15 TIGR03340 phn_DUF6 phosphonate 99.9 2.9E-23 6.2E-28 178.7 23.7 260 7-279 14-280 (281)
16 COG5070 VRG4 Nucleotide-sugar 99.9 4.4E-23 9.6E-28 162.3 16.6 280 2-290 14-304 (309)
17 KOG1442 GDP-fucose transporter 99.9 1.9E-24 4.1E-29 175.0 7.7 284 4-292 38-337 (347)
18 COG0697 RhaT Permeases of the 99.9 3.9E-20 8.4E-25 159.8 29.7 259 11-283 24-288 (292)
19 TIGR00688 rarD rarD protein. T 99.9 4.9E-20 1.1E-24 156.6 26.2 229 8-257 16-255 (256)
20 COG5006 rhtA Threonine/homoser 99.9 3.2E-20 7E-25 149.1 20.5 251 14-286 32-286 (292)
21 KOG1580 UDP-galactose transpor 99.8 8.3E-20 1.8E-24 145.1 13.2 255 20-282 50-313 (337)
22 KOG1581 UDP-galactose transpor 99.8 3.7E-18 8.1E-23 140.9 23.3 258 20-286 48-317 (327)
23 TIGR00776 RhaT RhaT L-rhamnose 99.8 2.1E-17 4.6E-22 142.5 25.6 234 30-282 33-288 (290)
24 KOG4510 Permease of the drug/m 99.8 4.6E-21 1E-25 154.9 2.5 267 3-284 47-327 (346)
25 COG2962 RarD Predicted permeas 99.8 5.1E-16 1.1E-20 128.3 28.2 254 23-290 34-291 (293)
26 PF04142 Nuc_sug_transp: Nucle 99.8 8.3E-17 1.8E-21 134.6 21.3 210 55-272 15-243 (244)
27 KOG3912 Predicted integral mem 99.7 5E-16 1.1E-20 126.8 19.5 226 58-283 87-335 (372)
28 KOG2234 Predicted UDP-galactos 99.7 4.8E-15 1E-19 126.0 24.7 223 57-287 92-327 (345)
29 KOG2765 Predicted membrane pro 99.7 2.2E-16 4.8E-21 133.9 14.1 224 56-286 158-394 (416)
30 PF03151 TPT: Triose-phosphate 99.7 1.2E-15 2.5E-20 119.5 15.3 145 138-282 1-153 (153)
31 KOG1582 UDP-galactose transpor 99.7 3.2E-15 7E-20 121.5 16.4 266 10-284 59-334 (367)
32 KOG1583 UDP-N-acetylglucosamin 99.6 5E-16 1.1E-20 126.6 8.5 259 24-285 34-317 (330)
33 KOG2766 Predicted membrane pro 99.5 2.6E-15 5.6E-20 121.1 1.9 260 10-285 34-302 (336)
34 KOG4314 Predicted carbohydrate 99.4 2.4E-12 5.2E-17 100.2 8.8 221 57-286 53-280 (290)
35 PF00892 EamA: EamA-like trans 99.4 8.1E-12 1.8E-16 93.9 10.2 119 7-127 4-124 (126)
36 COG2510 Predicted membrane pro 99.3 9.7E-12 2.1E-16 90.1 9.2 135 138-281 4-138 (140)
37 PF00892 EamA: EamA-like trans 99.3 4.4E-11 9.6E-16 89.9 9.8 124 147-281 1-125 (126)
38 TIGR00803 nst UDP-galactose tr 99.3 5.8E-11 1.3E-15 98.7 11.1 189 81-280 2-222 (222)
39 PF13536 EmrE: Multidrug resis 99.3 3.4E-11 7.3E-16 89.1 8.5 105 28-133 2-110 (113)
40 COG2510 Predicted membrane pro 99.2 1.1E-10 2.4E-15 84.7 9.3 123 6-129 15-139 (140)
41 PF06800 Sugar_transport: Suga 99.2 7.2E-09 1.6E-13 86.7 20.3 210 54-279 42-268 (269)
42 PRK15430 putative chlorampheni 99.1 1.7E-08 3.7E-13 87.6 17.5 142 132-281 3-144 (296)
43 TIGR00688 rarD rarD protein. T 99.0 2.3E-08 5.1E-13 84.9 16.4 139 138-281 3-141 (256)
44 TIGR03340 phn_DUF6 phosphonate 98.9 5.5E-08 1.2E-12 83.8 14.5 133 139-282 3-135 (281)
45 TIGR00950 2A78 Carboxylate/Ami 98.8 1.9E-07 4.2E-12 79.4 15.1 118 7-125 141-260 (260)
46 PF05653 Mg_trans_NIPA: Magnes 98.8 4.6E-08 1E-12 84.4 9.8 64 65-128 58-121 (300)
47 PLN00411 nodulin MtN21 family 98.7 1.5E-06 3.3E-11 77.1 16.3 135 138-281 14-155 (358)
48 PRK15051 4-amino-4-deoxy-L-ara 98.6 1.3E-06 2.7E-11 64.1 12.5 64 65-128 45-108 (111)
49 PRK10532 threonine and homoser 98.5 5.1E-06 1.1E-10 72.0 14.5 119 8-129 162-281 (293)
50 COG2962 RarD Predicted permeas 98.5 7.6E-06 1.6E-10 68.5 14.6 139 135-281 5-143 (293)
51 PRK11689 aromatic amino acid e 98.5 6.8E-06 1.5E-10 71.3 14.4 130 137-282 4-137 (295)
52 PRK02971 4-amino-4-deoxy-L-ara 98.4 6.7E-06 1.5E-10 61.8 12.3 121 137-285 2-125 (129)
53 PRK11272 putative DMT superfam 98.4 1.9E-05 4.1E-10 68.4 16.3 130 139-282 10-141 (292)
54 PTZ00343 triose or hexose phos 98.4 2E-05 4.3E-10 70.0 16.2 136 138-282 50-186 (350)
55 PRK11453 O-acetylserine/cystei 98.4 1.2E-05 2.6E-10 69.9 14.5 124 140-282 7-132 (299)
56 PRK13499 rhamnose-proton sympo 98.4 0.00026 5.6E-09 62.0 22.0 227 52-283 68-342 (345)
57 PF03151 TPT: Triose-phosphate 98.2 6E-05 1.3E-09 58.6 13.9 124 5-128 11-152 (153)
58 PF13536 EmrE: Multidrug resis 98.2 4.6E-05 9.9E-10 56.1 12.5 72 213-285 37-109 (113)
59 TIGR00817 tpt Tpt phosphate/ph 98.2 0.00011 2.3E-09 64.1 15.2 124 147-281 12-136 (302)
60 PRK02971 4-amino-4-deoxy-L-ara 98.0 3.5E-05 7.6E-10 57.9 8.5 72 60-131 51-124 (129)
61 TIGR00776 RhaT RhaT L-rhamnose 98.0 8E-05 1.7E-09 64.4 11.4 132 138-284 2-138 (290)
62 COG4975 GlcU Putative glucose 98.0 3.2E-06 7E-11 68.7 2.4 217 50-282 52-285 (288)
63 KOG2922 Uncharacterized conser 97.9 2.6E-05 5.7E-10 66.1 6.8 67 64-130 71-137 (335)
64 PRK10452 multidrug efflux syst 97.9 0.00022 4.8E-09 52.6 9.7 69 61-129 34-103 (120)
65 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.00021 4.6E-09 52.3 9.3 56 226-281 53-108 (111)
66 COG0697 RhaT Permeases of the 97.8 0.0012 2.6E-08 56.6 15.3 140 136-286 6-147 (292)
67 PRK10650 multidrug efflux syst 97.8 0.00054 1.2E-08 49.7 10.7 68 60-127 38-106 (109)
68 PF08449 UAA: UAA transporter 97.8 0.00034 7.5E-09 60.9 11.3 125 149-286 12-140 (303)
69 PRK09541 emrE multidrug efflux 97.8 0.00036 7.9E-09 50.8 9.5 68 62-129 35-103 (110)
70 PRK11431 multidrug efflux syst 97.7 0.00056 1.2E-08 49.3 10.1 68 61-128 33-101 (105)
71 COG2076 EmrE Membrane transpor 97.7 0.00035 7.6E-09 49.9 8.5 68 61-128 34-102 (106)
72 PF04657 DUF606: Protein of un 97.6 0.0032 7E-08 47.9 13.3 130 139-279 3-138 (138)
73 COG2076 EmrE Membrane transpor 97.6 0.00085 1.8E-08 47.9 9.4 54 230-283 50-104 (106)
74 PF06027 DUF914: Eukaryotic pr 97.6 0.00099 2.1E-08 58.3 11.8 141 136-285 12-154 (334)
75 PRK09541 emrE multidrug efflux 97.6 0.00085 1.8E-08 48.9 8.9 56 229-284 49-105 (110)
76 PRK10452 multidrug efflux syst 97.5 0.00037 8E-09 51.5 6.9 56 229-284 49-105 (120)
77 PRK10650 multidrug efflux syst 97.5 0.0042 9.2E-08 45.0 12.0 53 229-281 54-107 (109)
78 PRK11431 multidrug efflux syst 97.5 0.0012 2.6E-08 47.6 9.0 55 229-283 48-103 (105)
79 PRK13499 rhamnose-proton sympo 97.5 0.0035 7.5E-08 55.1 13.4 145 135-287 5-158 (345)
80 PF04142 Nuc_sug_transp: Nucle 97.3 0.00055 1.2E-08 57.5 6.5 76 211-286 18-93 (244)
81 PF00893 Multi_Drug_Res: Small 97.3 0.0024 5.2E-08 45.1 8.3 58 63-120 35-93 (93)
82 COG5006 rhtA Threonine/homoser 97.2 0.0043 9.3E-08 51.2 10.0 73 55-127 207-280 (292)
83 PF04657 DUF606: Protein of un 97.2 0.015 3.2E-07 44.3 12.1 117 9-126 16-138 (138)
84 PF05653 Mg_trans_NIPA: Magnes 96.7 0.015 3.3E-07 50.4 9.8 117 135-281 5-121 (300)
85 COG3238 Uncharacterized protei 96.6 0.066 1.4E-06 41.0 11.6 137 136-282 4-146 (150)
86 KOG4510 Permease of the drug/m 96.5 7.9E-05 1.7E-09 61.6 -5.1 135 136-284 37-171 (346)
87 PF06800 Sugar_transport: Suga 96.5 0.046 9.9E-07 46.3 10.8 93 23-118 164-256 (269)
88 TIGR00803 nst UDP-galactose tr 96.3 0.043 9.3E-07 45.4 9.8 67 60-126 155-221 (222)
89 PF06379 RhaT: L-rhamnose-prot 96.3 0.16 3.4E-06 44.3 13.1 144 136-290 6-161 (344)
90 PF10639 UPF0546: Uncharacteri 96.2 0.016 3.4E-07 42.2 5.9 65 63-127 47-112 (113)
91 KOG2234 Predicted UDP-galactos 96.1 0.4 8.6E-06 41.9 14.7 142 138-281 16-163 (345)
92 PF00893 Multi_Drug_Res: Small 95.7 0.064 1.4E-06 37.8 6.9 46 228-273 47-93 (93)
93 PF07857 DUF1632: CEO family ( 95.4 0.015 3.3E-07 48.8 3.5 128 138-283 1-135 (254)
94 COG3238 Uncharacterized protei 95.3 0.5 1.1E-05 36.3 11.1 117 10-127 21-144 (150)
95 KOG1441 Glucose-6-phosphate/ph 94.0 0.082 1.8E-06 46.0 4.6 126 3-129 172-307 (316)
96 KOG2765 Predicted membrane pro 93.4 0.065 1.4E-06 46.9 2.9 74 212-285 161-234 (416)
97 KOG4314 Predicted carbohydrate 92.8 0.074 1.6E-06 42.3 2.1 65 223-287 66-130 (290)
98 PF10639 UPF0546: Uncharacteri 92.6 0.99 2.2E-05 32.9 7.5 50 230-279 61-111 (113)
99 PF06379 RhaT: L-rhamnose-prot 91.3 9.7 0.00021 33.5 19.6 228 52-282 68-340 (344)
100 KOG1444 Nucleotide-sugar trans 91.3 8.3 0.00018 33.4 12.7 132 138-282 13-149 (314)
101 KOG1580 UDP-galactose transpor 91.0 0.35 7.6E-06 39.8 4.1 74 55-128 239-312 (337)
102 COG5070 VRG4 Nucleotide-sugar 90.9 7.9 0.00017 31.8 11.6 104 24-127 186-294 (309)
103 KOG1581 UDP-galactose transpor 90.7 3.1 6.6E-05 35.8 9.5 75 52-126 236-310 (327)
104 COG4975 GlcU Putative glucose 89.9 0.17 3.6E-06 41.9 1.4 68 51-119 204-271 (288)
105 KOG2922 Uncharacterized conser 86.9 0.12 2.5E-06 44.5 -1.3 118 133-280 17-134 (335)
106 PRK02237 hypothetical protein; 80.5 3.8 8.2E-05 29.4 4.3 41 90-130 66-106 (109)
107 PF02694 UPF0060: Uncharacteri 79.4 4.1 8.9E-05 29.1 4.2 41 90-130 64-104 (107)
108 KOG3912 Predicted integral mem 78.2 5.8 0.00013 33.8 5.4 56 227-282 103-158 (372)
109 PRK02237 hypothetical protein; 74.8 5.7 0.00012 28.5 3.8 45 239-283 62-106 (109)
110 PF02694 UPF0060: Uncharacteri 73.3 5.2 0.00011 28.6 3.4 45 239-283 60-104 (107)
111 COG1742 Uncharacterized conser 73.2 7.2 0.00016 27.7 4.0 41 91-131 66-106 (109)
112 PF04342 DUF486: Protein of un 63.3 8.9 0.00019 27.4 2.8 28 251-278 77-104 (108)
113 PF05977 MFS_3: Transmembrane 62.5 1.4E+02 0.0031 28.2 14.3 26 232-257 342-367 (524)
114 KOG1582 UDP-galactose transpor 58.6 81 0.0018 27.0 8.1 74 59-132 262-335 (367)
115 PF07168 Ureide_permease: Urei 58.2 16 0.00034 31.7 4.0 138 143-282 2-146 (336)
116 KOG4831 Unnamed protein [Funct 55.9 16 0.00035 26.1 3.1 64 64-127 59-123 (125)
117 COG4147 DhlC Predicted symport 51.6 1.1E+02 0.0024 28.5 8.4 54 233-286 445-510 (529)
118 PF07444 Ycf66_N: Ycf66 protei 50.1 21 0.00045 24.5 2.8 27 261-287 4-30 (84)
119 PF04342 DUF486: Protein of un 49.5 96 0.0021 22.3 10.3 55 73-127 51-106 (108)
120 cd01324 cbb3_Oxidase_CcoQ Cyto 49.0 23 0.00049 21.4 2.6 25 267-291 16-40 (48)
121 TIGR00905 2A0302 transporter, 44.8 2.6E+02 0.0056 25.9 10.3 21 265-285 417-437 (473)
122 PRK10666 ammonium transporter; 43.2 2.7E+02 0.0059 25.7 20.2 77 104-182 273-353 (428)
123 COG4657 RnfA Predicted NADH:ub 42.9 1.6E+02 0.0035 23.0 10.1 63 120-182 115-183 (193)
124 PF05297 Herpes_LMP1: Herpesvi 41.7 8.6 0.00019 32.7 0.0 68 78-145 44-115 (381)
125 KOG2766 Predicted membrane pro 41.6 6.5 0.00014 33.1 -0.7 102 165-281 48-149 (336)
126 KOG1583 UDP-N-acetylglucosamin 41.0 14 0.0003 31.5 1.1 49 241-289 96-144 (330)
127 PF11044 TMEMspv1-c74-12: Plec 40.8 77 0.0017 18.7 3.9 9 275-283 21-29 (49)
128 TIGR02865 spore_II_E stage II 40.2 4E+02 0.0086 26.7 14.7 46 84-129 11-56 (764)
129 KOG1442 GDP-fucose transporter 39.2 60 0.0013 27.9 4.5 105 23-127 215-325 (347)
130 PF07857 DUF1632: CEO family ( 38.9 2.4E+02 0.0053 23.9 13.9 135 22-162 26-208 (254)
131 COG3086 RseC Positive regulato 38.8 1.4E+02 0.0029 22.9 5.9 23 235-257 73-95 (150)
132 PF05545 FixQ: Cbb3-type cytoc 38.5 48 0.001 19.9 3.0 23 267-289 15-37 (49)
133 PF06946 Phage_holin_5: Phage 37.6 1.4E+02 0.0031 20.9 5.7 57 230-286 24-84 (93)
134 PF04246 RseC_MucC: Positive r 35.8 84 0.0018 23.5 4.6 23 235-257 66-88 (135)
135 TIGR03644 marine_trans_1 proba 34.2 3.7E+02 0.008 24.6 18.8 62 94-158 254-316 (404)
136 COG1742 Uncharacterized conser 33.3 27 0.00058 24.9 1.4 44 240-283 62-105 (109)
137 PF15099 PIRT: Phosphoinositid 30.0 81 0.0017 23.4 3.4 22 259-280 74-95 (129)
138 PF09656 PGPGW: Putative trans 28.6 1.5E+02 0.0033 18.4 4.6 45 112-161 4-48 (53)
139 KOG1443 Predicted integral mem 28.0 4.2E+02 0.0091 23.3 10.7 69 59-127 245-313 (349)
140 PF00909 Ammonium_transp: Ammo 27.9 4.6E+02 0.01 23.8 22.4 121 52-176 185-315 (399)
141 COG1971 Predicted membrane pro 26.4 1.2E+02 0.0025 24.5 4.1 43 237-279 41-84 (190)
142 PRK10655 potE putrescine trans 25.1 5.2E+02 0.011 23.5 10.9 23 265-287 409-431 (438)
143 PF01350 Flavi_NS4A: Flaviviru 24.8 3E+02 0.0064 21.1 5.7 52 230-285 68-119 (144)
144 PF05977 MFS_3: Transmembrane 24.5 6.1E+02 0.013 24.0 11.1 82 81-162 251-334 (524)
145 PRK10644 arginine:agmatin anti 24.5 5.5E+02 0.012 23.5 9.4 21 266-286 410-430 (445)
146 PRK11902 ampG muropeptide tran 23.8 5.2E+02 0.011 23.0 14.6 20 263-282 369-388 (402)
147 TIGR00836 amt ammonium transpo 23.6 5.7E+02 0.012 23.4 18.5 52 94-148 240-292 (403)
148 PF07331 TctB: Tripartite tric 22.2 3.3E+02 0.0072 20.1 10.4 11 51-61 66-76 (141)
149 PF04039 MnhB: Domain related 21.2 3.4E+02 0.0073 19.8 6.4 46 237-282 3-49 (124)
150 PF07123 PsbW: Photosystem II 20.5 1.1E+02 0.0024 23.1 2.7 30 133-162 102-131 (138)
151 PRK10489 enterobactin exporter 20.4 6.2E+02 0.013 22.6 13.1 19 264-282 380-398 (417)
152 PRK10862 SoxR reducing system 20.1 3.2E+02 0.0069 21.1 5.4 17 239-255 77-93 (154)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=3.4e-40 Score=286.89 Aligned_cols=285 Identities=62% Similarity=1.007 Sum_probs=238.3
Q ss_pred CchhhhHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022445 1 MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAA 80 (297)
Q Consensus 1 ~w~~~s~~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 80 (297)
+||+.|...++.||+.++++++|..++++|+.++.+.+.+....+.+++++.++++++...+.|++...+..+.+.++++
T Consensus 9 ~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 88 (302)
T TIGR00817 9 LWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSK 88 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999999999999999999999998776665433445556678889999999999998999999999999
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022445 81 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAM 160 (297)
Q Consensus 81 ~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~ 160 (297)
++++++++++++.|+++++++++++|||++++++.+++++++|+.+...+|.+.+..|++++++|+++||.+.+..||..
T Consensus 89 ~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 168 (302)
T TIGR00817 89 VAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAM 168 (302)
T ss_pred ccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987766667778899999999999999999999998
Q ss_pred c--cCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHH-HHHHHHHHHHHHhhccchh
Q 022445 161 T--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM-FYHLYNQLATNTLERVAPL 237 (297)
Q Consensus 161 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~ 237 (297)
+ ++|+.+...+++..+.+.++|.....|+......++.+..........+...+..+. .....+...+..+++++|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~ 248 (302)
T TIGR00817 169 TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPL 248 (302)
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 7 899999999999999999999887766433221111110000111112222333333 3444556777899999999
Q ss_pred HHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 238 THAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 238 ~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
++++..+++|++++++|++++||++|..+++|.++++.|+.+|++.|.
T Consensus 249 t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 249 THSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999986543
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=2.2e-37 Score=273.19 Aligned_cols=282 Identities=37% Similarity=0.639 Sum_probs=238.9
Q ss_pred CchhhhHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022445 1 MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPI--DSKLLKLLIPVAVCHALGHVTSNVSF 78 (297)
Q Consensus 1 ~w~~~s~~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~al 78 (297)
.||+.|+..++.||++++++++|+.++.+|+.++.+++.++...+.+++++. +++.++..++.|+++...+...+.|+
T Consensus 56 ~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl 135 (350)
T PTZ00343 56 TWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISM 135 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999887666554444443334 34578899999999988777788999
Q ss_pred ccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 022445 79 AAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKK 158 (297)
Q Consensus 79 ~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~ 158 (297)
++++++.+++++++.|+++++++++++|||++++++.+++++++|+.+.+.+|.++++.|++++++|++++|.++++.||
T Consensus 136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~ 215 (350)
T PTZ00343 136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKK 215 (350)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred hhcc-------CCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchh---hhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 022445 159 AMTD-------MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLS---DAISKVGMVKFISDLFWVGMFYHLYNQLAT 228 (297)
Q Consensus 159 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 228 (297)
.+++ +++.+...+..+.+.++++|+....|....... +. ...+.......+..++..++.++.+|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f 294 (350)
T PTZ00343 216 TMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPV-WTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAF 294 (350)
T ss_pred HhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8864 446667777789999999998876665332110 00 011111222334456666888888999999
Q ss_pred HHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHh
Q 022445 229 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 229 ~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
.++++++|.++++.++++|+++++.|++++||++|+.+++|+++++.|+.+|++.
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999875
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-35 Score=248.90 Aligned_cols=283 Identities=38% Similarity=0.548 Sum_probs=249.8
Q ss_pred CchhhhHHHHHHhHHHhh--cCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHhhhhh
Q 022445 1 MWYFLNVIFNILNKRIYN--YFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPI-DSKLLKLLIPVAVCHALGHVTSNVS 77 (297)
Q Consensus 1 ~w~~~s~~~~~~~K~~~~--~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a 77 (297)
+||+.|++.++.||++++ +|++|.+++..++..+.+.......++.+++.+. ++..++..++.|+++..+.++.+.|
T Consensus 24 ~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~S 103 (316)
T KOG1441|consen 24 IWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVS 103 (316)
T ss_pred HHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchh
Confidence 599999999999999999 8999999999999988888888877777665554 5568899999999999999999999
Q ss_pred cccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHH
Q 022445 78 FAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSK 157 (297)
Q Consensus 78 l~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~ 157 (297)
+.++|++.+++++++.|+++.++++++.+|+.++..+++++....|+.+.+.+|.++|+.|.+.++++.+..+.++++.|
T Consensus 104 l~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~ 183 (316)
T KOG1441|consen 104 LSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSK 183 (316)
T ss_pred hhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc----cCCchhHHHHHHHHHHHHHH-HHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022445 158 KAMT----DMDSTNIYAYISIIALFVCI-PPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLE 232 (297)
Q Consensus 158 ~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 232 (297)
+.++ +.|+.+...|+..++...++ |.....|+... . .+.. ...+.. ........++++.+|...+.+++
T Consensus 184 ~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~~~--~~~~~~--~~~~~~~sv~~f~~Nls~f~~ig 257 (316)
T KOG1441|consen 184 KLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-V-GFLT--APWFVT--FLILLLNSVLAFLLNLSAFLVIG 257 (316)
T ss_pred HhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-e-eeec--cccchh--hHHHHHHHHHHHHHHHHHHHHHc
Confidence 9983 48999999999999999999 77766665543 1 1100 112222 23333344999999999999999
Q ss_pred ccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHHHH
Q 022445 233 RVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE 289 (297)
Q Consensus 233 ~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~ 289 (297)
+++|+++++.+..|..+.++.|+++|+|+.|+.+..|+++.++|+.+|++.+.++++
T Consensus 258 ~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 258 RTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred ccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999999999999999998776543
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=7.3e-30 Score=224.52 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=211.3
Q ss_pred hhHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhC-C-CCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccch
Q 022445 5 LNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVG-L-PKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVA 82 (297)
Q Consensus 5 ~s~~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 82 (297)
...+.....|..+++.-.|..+.++|+.++.+++.++.+.+ + +++++.+++.+......|++......+.+.|++|++
T Consensus 24 ~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~ts 103 (358)
T PLN00411 24 SVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSN 103 (358)
T ss_pred HHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677889999999876788899999999998887764432 2 222333456667777778776566678999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHH------hCCcCChHHHHHHHHHHhhhheeecc-cc-----------------------
Q 022445 83 VSFTHTIKALEPFFNAAASQFI------LGQQLPLTLWLSLAPVVIGVSMASLT-EL----------------------- 132 (297)
Q Consensus 83 ~~~~~~l~~~~pi~~~i~~~~~------~~e~~s~~~~~~~~~~~~Gv~~~~~~-~~----------------------- 132 (297)
++.+.++.++.|+++.++++++ +|||++++++.|++++++|+.++... +.
T Consensus 104 a~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (358)
T PLN00411 104 PTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSS 183 (358)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCC
Confidence 9999999999999999999999 69999999999999999999976531 10
Q ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHH
Q 022445 133 SFN-WTGFISAMISNISFTYRSIYSKKAMTDMDST-NIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFI 210 (297)
Q Consensus 133 ~~~-~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (297)
+.+ ..|+++.+.|+++||+|.+..|+..+++++. ...+++..++...+.+.....+..+.... ....+ .. .
T Consensus 184 ~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~-~~-~ 256 (358)
T PLN00411 184 NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW-----IIHFD-IT-L 256 (358)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccc-----eeccc-hH-H
Confidence 112 4599999999999999999999998887665 55667777776666666655443211110 00011 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHH
Q 022445 211 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 287 (297)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 287 (297)
..+++.++.........++++++.+|.++++..+++|++++++|++++||++++.+++|+++++.|+.+.++.++++
T Consensus 257 ~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 257 ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 22333444443444566789999999999999999999999999999999999999999999999999988655444
No 5
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-28 Score=203.09 Aligned_cols=285 Identities=17% Similarity=0.242 Sum_probs=252.5
Q ss_pred chhhhHHHHHHhHHHhhcCCchHHHHH--HHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022445 2 WYFLNVIFNILNKRIYNYFPYPYFVSV--IHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFA 79 (297)
Q Consensus 2 w~~~s~~~~~~~K~~~~~~~~p~~~~~--~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 79 (297)
|+.+|..+.+.||++++++++|..+.. .|.+.+.+.+....+.+.-+-++++++..|.++|.++++.++......+++
T Consensus 20 Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk 99 (314)
T KOG1444|consen 20 YCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLK 99 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHcccccc
Confidence 678899999999999999999966555 999999998888888888888899999999999999999999999999999
Q ss_pred cchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 022445 80 AVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKA 159 (297)
Q Consensus 80 ~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~~ 159 (297)
|++++.++++++..|+++++....++|+|+++.-|.++..+.+|......+|.+++..|+.+.+...++-+.+.+..||.
T Consensus 100 ~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~ 179 (314)
T KOG1444|consen 100 YLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKS 179 (314)
T ss_pred ccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hc--cCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 022445 160 MT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPL 237 (297)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 237 (297)
.+ +.+..++.+|.++.+.+.+.......++.+. .....+.......+..+..+|++++..++..+.+.+..|+.
T Consensus 180 vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~----l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAt 255 (314)
T KOG1444|consen 180 VDSANLNKFGLVFYNNLLSLPPLLILSFITGELDA----LSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSAT 255 (314)
T ss_pred hccccccceeEEeehhHHHHHHHHHHHHHhcchHH----HHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 74 5778899999999999988888877766441 11222333445567788889999999999999999999999
Q ss_pred HHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHHHHH
Q 022445 238 THAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEE 290 (297)
Q Consensus 238 ~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~~ 290 (297)
+.++++..+...+.+...+++|++.++..++|..+.++|.+.|++.+.++++.
T Consensus 256 T~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 256 TTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred ceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 99999977777777777777788899999999999999999999987665543
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=4.9e-27 Score=203.39 Aligned_cols=255 Identities=12% Similarity=0.052 Sum_probs=188.6
Q ss_pred HHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcc----cchhhH
Q 022445 10 NILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFA----AVAVSF 85 (297)
Q Consensus 10 ~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----~~~~~~ 85 (297)
....|..+++++ |....++|+.++.+++.+.. +.++. +++.++.....++.......+.+.+++ +.+++.
T Consensus 20 ~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~--~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~ 93 (295)
T PRK11689 20 VGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV--GFPRL---RQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIE 93 (295)
T ss_pred HHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc--ccccc---ccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchH
Confidence 457899888886 99999999999988777653 12222 222233444555555566667776665 467788
Q ss_pred HHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc-----------cchHHHHHHHHHHHHHHHHHHH
Q 022445 86 THTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-----------SFNWTGFISAMISNISFTYRSI 154 (297)
Q Consensus 86 ~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~-----------~~~~~G~l~~l~a~~~~a~~~v 154 (297)
+.++.++.|+++.+++++++|||++++++.+++++++|++++..++. +.+..|+++++.|+++||.+.+
T Consensus 94 a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v 173 (295)
T PRK11689 94 VGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCN 173 (295)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999998875432 1234699999999999999999
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022445 155 YSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERV 234 (297)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 234 (297)
+.||..++.|+..... ..+.+.+.+.....+.+. ...+.. .+..+...++.+.....+.++++|+.
T Consensus 174 ~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~----------~~~~~~-~~~~l~~~~~~t~~~~~l~~~al~~~ 239 (295)
T PRK11689 174 VTRKYARGKNGITLFF---ILTALALWIKYFLSPQPA----------MVFSLP-AIIKLLLAAAAMGFGYAAWNVGILHG 239 (295)
T ss_pred HHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCcc----------ccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999987777765422 223333333222222111 011112 23333444554445556778899999
Q ss_pred chhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 235 APLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 235 ~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
++.+.+...+++|+++++++++++||+++..+++|+++++.|+.+....+
T Consensus 240 ~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 240 NMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 99999999999999999999999999999999999999999998875543
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=1.5e-26 Score=200.08 Aligned_cols=261 Identities=15% Similarity=0.113 Sum_probs=202.3
Q ss_pred HHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHhhhhhc-ccchhhHH
Q 022445 9 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCH-ALGHVTSNVSF-AAVAVSFT 86 (297)
Q Consensus 9 ~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al-~~~~~~~~ 86 (297)
..+..|..+++.+ |..++++|+.++.+++++....++++ +.+++.++.....|.+. .....+.+.+. +++|++.+
T Consensus 23 ~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a 99 (292)
T PRK11272 23 TYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHP--LPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIA 99 (292)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence 4567898888666 99999999999988877765443322 23455666666777664 45677888888 99999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc-cccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 022445 87 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDS 165 (297)
Q Consensus 87 ~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~-~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~ 165 (297)
+++.++.|+++.+++.+ +|||++++++.+++++++|+.+...+ +.+.+..|++++++++++||.+.+..||..++ ++
T Consensus 100 ~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~ 177 (292)
T PRK11272 100 AVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSRLPLP-VG 177 (292)
T ss_pred HHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-cc
Confidence 99999999999999986 69999999999999999999987644 33445679999999999999999999997543 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHH-HHHHHHHHhhccchhHHhHHhh
Q 022445 166 TNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHL-YNQLATNTLERVAPLTHAVGNV 244 (297)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~s~~~~ 244 (297)
.....++...+...+.+.....+.+... ......+..+.+.++.+.. .....+.++++.++.+.+...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~ 247 (292)
T PRK11272 178 MMAGAAEMLAAGVVLLIASLLSGERLTA----------LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAY 247 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCcccc----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 5667788888888777766543322100 0011223444444554433 3356677889999999999999
Q ss_pred hhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 245 LKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 245 ~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
++|+++.+++++++||++++.+++|+++++.|+.+.+..+
T Consensus 248 l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 248 VNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876543
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=8.7e-27 Score=198.57 Aligned_cols=252 Identities=17% Similarity=0.174 Sum_probs=199.3
Q ss_pred HHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH-HHHHHHHHhhhhhcccchhhHHH
Q 022445 9 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVA-VCHALGHVTSNVSFAAVAVSFTH 87 (297)
Q Consensus 9 ~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~~~~~~ 87 (297)
..+..|+.+++...|..+.++|+..+.+++.+..+.+ + ++++++.....+ +....+..+.+.|++++|++++.
T Consensus 4 ~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ 77 (260)
T TIGR00950 4 TGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-----P-PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAA 77 (260)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-----c-CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 4567899998877789999999998888777665432 1 233344444444 45678889999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeeccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCch
Q 022445 88 TIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE-LSFNWTGFISAMISNISFTYRSIYSKKAMTDMDST 166 (297)
Q Consensus 88 ~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~-~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~ 166 (297)
++.++.|+++++++.+++|||++++++.+++++++|+.++..++ .+.+..|+.++++++++|+.+.+..||..++.|+.
T Consensus 78 ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~ 157 (260)
T TIGR00950 78 LLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPE 157 (260)
T ss_pred HHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCch
Confidence 99999999999999999999999999999999999999876543 34567899999999999999999999998877754
Q ss_pred h--HHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHhhccchhHHhHHh
Q 022445 167 N--IYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH-LYNQLATNTLERVAPLTHAVGN 243 (297)
Q Consensus 167 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~s~~~ 243 (297)
. ...+.+..+.+.+.|.....+.... .+ ...+..+...++++. ......++++++.++.+.+...
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~ 225 (260)
T TIGR00950 158 LLQFTGWVLLLGALLLLPFAWFLGPNPQ-----------AL-SLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA 225 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCC-----------cc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3 4446677888888777665432211 01 112333444455443 3445667899999999999999
Q ss_pred hhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHH
Q 022445 244 VLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVA 278 (297)
Q Consensus 244 ~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~ 278 (297)
+++|+++.+++++++||++++.++.|+.+++.|++
T Consensus 226 ~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 226 LAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998863
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=1.1e-25 Score=195.44 Aligned_cols=263 Identities=15% Similarity=0.238 Sum_probs=189.7
Q ss_pred HHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHhhhhhccc-chhhHH
Q 022445 9 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCH-ALGHVTSNVSFAA-VAVSFT 86 (297)
Q Consensus 9 ~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~-~~~~~~ 86 (297)
.....|..+++.+ |..+.++|+.++.+.+.+... +++ .++ +.....++.. .....+.+.++++ .|++.+
T Consensus 19 ~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~~~---~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a 89 (299)
T PRK11453 19 NFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--RPK---VPL---NLLLGYGLTISFGQFAFLFCAINFGMPAGLA 89 (299)
T ss_pred hHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--CCC---Cch---HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3456788888776 999999999987765554432 111 122 2334445543 3445567788887 689999
Q ss_pred HHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeeccc---ccchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 022445 87 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTGFISAMISNISFTYRSIYSKKAMTDM 163 (297)
Q Consensus 87 ~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~---~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~ 163 (297)
.++.++.|+++.+++++++|||++++++.+++++++|+.++..++ .+.+..|+++++.++++||.+.++.||..++.
T Consensus 90 ~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~ 169 (299)
T PRK11453 90 SLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHS 169 (299)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999886532 23345799999999999999999999986654
Q ss_pred Cchh---HHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHH
Q 022445 164 DSTN---IYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYN-QLATNTLERVAPLTH 239 (297)
Q Consensus 164 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~ 239 (297)
++.. ...+....+.+...+.....|++..... ...+.+ ...+..+++.++++.... ...++.+++.++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~ 244 (299)
T PRK11453 170 TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIH----SLVTID-MTTILSLMYLAFVATIVGYGIWGTLLGRYETWRV 244 (299)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhh----hhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4433 3344444443333333333333221100 011112 233556666666666544 455678899999999
Q ss_pred hHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 240 AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 240 s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
+....++|+++.++|++++||+++..+++|+++++.|+.+..+.++
T Consensus 245 s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 245 APLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999988765543
No 10
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.95 E-value=1.3e-25 Score=195.16 Aligned_cols=271 Identities=19% Similarity=0.291 Sum_probs=218.4
Q ss_pred HHHHHhHHHhhc-C-C-chHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhh
Q 022445 8 IFNILNKRIYNY-F-P-YPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVS 84 (297)
Q Consensus 8 ~~~~~~K~~~~~-~-~-~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 84 (297)
...+.++.+.++ . . +|.++++.|+....+...+.....+ +++.++..++...+.++++..+..+.+.|++|+|.+
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p 91 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYP 91 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 344566666653 2 2 6999999999999887776554433 222344456778899999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc----cc------hHHHHHHHHHHHHHHHHHHH
Q 022445 85 FTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL----SF------NWTGFISAMISNISFTYRSI 154 (297)
Q Consensus 85 ~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~----~~------~~~G~l~~l~a~~~~a~~~v 154 (297)
..++.+++.|+++++++.+++|||++++++.++++..+|+++...+|. +. ...|+++.+++.++.|...+
T Consensus 92 ~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~ 171 (303)
T PF08449_consen 92 TQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGV 171 (303)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876542 11 12399999999999999999
Q ss_pred HHHHhhcc--CCchhHHHHHHHHHHHHHHHHHHHhc--chhhhhcchhhhhhh-hchhHHHHHHHHHHHHHHHHHHHHHH
Q 022445 155 YSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIVE--GPQLIKHGLSDAISK-VGMVKFISDLFWVGMFYHLYNQLATN 229 (297)
Q Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ 229 (297)
++||..++ .++.+.++|.+..+.+...+.....+ +... ..+. ...+..+..+...+......+...+.
T Consensus 172 ~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~-------~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~ 244 (303)
T PF08449_consen 172 YQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRS-------AIRFISAHPSVLLYLLLFSLTGALGQFFIFY 244 (303)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999854 56789999999999998888777632 1111 1111 12223455556666666666666677
Q ss_pred HhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHH
Q 022445 230 TLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 287 (297)
Q Consensus 230 ~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 287 (297)
..++.+|.+.++...+|.+.++++|++++||++++.++.|.++++.|..++++.++++
T Consensus 245 ~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 245 LIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 8899999999999999999999999999999999999999999999999999876654
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=3.8e-26 Score=197.01 Aligned_cols=273 Identities=12% Similarity=0.123 Sum_probs=214.2
Q ss_pred HHHHHHhHHHhhc-CCchHHHHHHHHHHHHHHHHHHHhhCCC--CCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchh
Q 022445 7 VIFNILNKRIYNY-FPYPYFVSVIHLLVGVVYCLVSWAVGLP--KRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAV 83 (297)
Q Consensus 7 ~~~~~~~K~~~~~-~~~p~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 83 (297)
.+.+..+..+-++ .+.|.+.+++.+....+...+....+.. +..+..++.++..+..++++..++.+.+.|++|+++
T Consensus 26 ~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsv 105 (334)
T PF06027_consen 26 TGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSV 105 (334)
T ss_pred HhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 3444555555553 6779888888877665554443322221 222223345666777899999999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc---------cchHHHHHHHHHHHHHHHHHHH
Q 022445 84 SFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL---------SFNWTGFISAMISNISFTYRSI 154 (297)
Q Consensus 84 ~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~---------~~~~~G~l~~l~a~~~~a~~~v 154 (297)
+.++++.++..+++++++++++|+|+++.|+.|++++++|+++....|. +....|+++++.|+++||.+++
T Consensus 106 tS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV 185 (334)
T PF06027_consen 106 TSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNV 185 (334)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998766542 2357999999999999999999
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022445 155 YSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERV 234 (297)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 234 (297)
..|+..++.|..+......+.+.++..+.....|..+....+++ .......+..+++.+......-..++..
T Consensus 186 ~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--------~~~~~~~v~~~~~lf~~y~l~p~~l~~s 257 (334)
T PF06027_consen 186 LEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWT--------SQVIGLLVGYALCLFLFYSLVPIVLRMS 257 (334)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--------hhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998888777776654332221 2223333433444444444555578999
Q ss_pred chhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHH
Q 022445 235 APLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 287 (297)
Q Consensus 235 ~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 287 (297)
+|+..++......+.+++++++++|+++++..++|.++++.|.++|+..++++
T Consensus 258 sAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 258 SATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred ccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 99988888888899999999999999999999999999999999998765543
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=1.4e-25 Score=194.16 Aligned_cols=253 Identities=13% Similarity=0.096 Sum_probs=193.6
Q ss_pred HHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHH
Q 022445 9 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHT 88 (297)
Q Consensus 9 ~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 88 (297)
.....|+.+++.+ |..+.++|+.++.+++.+....+ +.+.++++++.....|.+....+.+.+++++++|++.+++
T Consensus 27 ~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~ 102 (293)
T PRK10532 27 GASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPW---RLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA 102 (293)
T ss_pred hHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHH---hccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3447899998876 88899999999988877654321 1234556677777888888888889999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc--c-ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 022445 89 IKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT--E-LSFNWTGFISAMISNISFTYRSIYSKKAMTDMDS 165 (297)
Q Consensus 89 l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~--~-~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~ 165 (297)
+..+.|+++.+++ +||++++ .++.++++|+.++... + .+.+..|++++++++++||.|.+..||..++.++
T Consensus 103 l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~ 176 (293)
T PRK10532 103 LEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGAEHGP 176 (293)
T ss_pred HHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 9999999999887 3666554 4566778999877532 2 2335679999999999999999999999877777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHhHHhh
Q 022445 166 TNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYN-QLATNTLERVAPLTHAVGNV 244 (297)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~s~~~~ 244 (297)
... .+....++..+.|.....+.... .+ ...+...++.++++.... ...++++++.++.+.++..+
T Consensus 177 ~~~-~~~~~~~~~~l~~~~~~~~~~~~-----------~~-~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~ 243 (293)
T PRK10532 177 ATV-AIGSLIAALIFVPIGALQAGEAL-----------WH-WSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMS 243 (293)
T ss_pred hHH-HHHHHHHHHHHHHHHHHccCccc-----------CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHH
Confidence 665 45666777777776554332100 01 111223345565554444 45678999999999999999
Q ss_pred hhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 245 LKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 245 ~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
++|+++.++|++++||+++..+++|+++++.|.+......
T Consensus 244 l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 244 MEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987554
No 13
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.95 E-value=6.5e-25 Score=190.20 Aligned_cols=260 Identities=13% Similarity=0.071 Sum_probs=182.8
Q ss_pred HHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCC----CCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhH
Q 022445 10 NILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRA----PIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSF 85 (297)
Q Consensus 10 ~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 85 (297)
....|.. ++.+ |..++++|+.++.+++.+.....++++. ..+++.+......++..+.++.+.++|++++|++.
T Consensus 24 ~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 101 (296)
T PRK15430 24 PAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLE 101 (296)
T ss_pred HHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 4455765 4455 8999999999998766655432221110 11233333344555667788999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Q 022445 86 THTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMD- 164 (297)
Q Consensus 86 ~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~- 164 (297)
++++..+.|+++.+++++++|||++++++.++++++.|++++..++.+.. ..++.++++||.|.+..||..++..
T Consensus 102 a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~r~~~~~~~~ 177 (296)
T PRK15430 102 ASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAFYGLVRKKIAVEAQT 177 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999998865433222 4678899999999999999743221
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHh
Q 022445 165 -STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGN 243 (297)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~ 243 (297)
......+....+.....+. .+.+. .+ ........+..+...++.+...+....+++++.+|.+.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~-------~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~ 246 (296)
T PRK15430 178 GMLIETMWLLPVAAIYLFAI---ADSST-SH-------MGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQ 246 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHH---ccCCc-cc-------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1222233333333222111 11110 00 000001112333434544555566778899999999999999
Q ss_pred hhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 244 VLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 244 ~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
+++|++++++|++++||++++.+++|++++++|+.+...+...
T Consensus 247 ~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~ 289 (296)
T PRK15430 247 YIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIY 289 (296)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877655433
No 14
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=188.11 Aligned_cols=280 Identities=20% Similarity=0.284 Sum_probs=238.5
Q ss_pred CchhhhHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhh-CC---CCCCCC-CHHHHHHHHHHHHHHHHHHHhhh
Q 022445 1 MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAV-GL---PKRAPI-DSKLLKLLIPVAVCHALGHVTSN 75 (297)
Q Consensus 1 ~w~~~s~~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~-~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (297)
+||++|.++.+++|+.-.+|++|++++.+|.++-.++.....+. +. ++|.+. +++..+...+.++..+...++.|
T Consensus 23 ~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN 102 (349)
T KOG1443|consen 23 LYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSN 102 (349)
T ss_pred HHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhccccccc
Confidence 59999999999999999999999999999998877766543222 22 222233 34577888899999999999999
Q ss_pred hhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHH
Q 022445 76 VSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIY 155 (297)
Q Consensus 76 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~ 155 (297)
++++|++++.+++.++..++|+.+++.++--||.++.-.+.+.++.+|+.+..+.+.+++..|+.++..|.++.++...+
T Consensus 103 ~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~ 182 (349)
T KOG1443|consen 103 WSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAF 182 (349)
T ss_pred ceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc-----CCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchh---HHHHHHHHHHHHHHHHHHHH
Q 022445 156 SKKAMTD-----MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMV---KFISDLFWVGMFYHLYNQLA 227 (297)
Q Consensus 156 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~ 227 (297)
.|+.+++ -+|....+.........++|....+|++.... +...+...+.. .....+...|..++......
T Consensus 183 tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~--~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sE 260 (349)
T KOG1443|consen 183 TQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLIT--SSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSE 260 (349)
T ss_pred HHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccch--hhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998854 35888999999999999999999999876442 11222222221 22334445577888888899
Q ss_pred HHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 228 TNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 228 ~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
+....+++..+.++.+..+.+.+.+++..+.+|+++...++|..++..|+..+..
T Consensus 261 flLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 261 FLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999944
No 15
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.92 E-value=2.9e-23 Score=178.72 Aligned_cols=260 Identities=14% Similarity=0.118 Sum_probs=180.2
Q ss_pred HHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhC--CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhh
Q 022445 7 VIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVG--LPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVS 84 (297)
Q Consensus 7 ~~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 84 (297)
......+|...++- .+ ..+.+.....+.+.+....+ .++.++.+++.+......+........+.+.++++.|++
T Consensus 14 a~~~~~~k~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 90 (281)
T TIGR03340 14 AGWNLMAKSHADKE-PD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVG 90 (281)
T ss_pred HHHHHHHhhcCCch-hH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 34455677665542 23 34566655555555544332 222233344555566666667788899999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc-cchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 022445 85 FTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-SFNWTGFISAMISNISFTYRSIYSKKAMTDM 163 (297)
Q Consensus 85 ~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~-~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~ 163 (297)
.+..+.++.|+++.+++++++|||+++++|.|+.+++.|+.++..++. +.+..|+.+++.++++|+.|.+..|+..++.
T Consensus 91 ~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~ 170 (281)
T TIGR03340 91 LVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAALGV 170 (281)
T ss_pred hhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccccch
Confidence 999999999999999999999999999999999999999998765432 3345788899999999999999998875555
Q ss_pred CchhHHHHHHHHHHHHH-HHHHHHh---cchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 022445 164 DSTNIYAYISIIALFVC-IPPAIIV---EGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTH 239 (297)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 239 (297)
++..........+.... .|..... +.... . ......+......++.+...+...++++++.++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~ 240 (281)
T TIGR03340 171 PAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSM---------F-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATV 240 (281)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHhccch---------h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEE
Confidence 54321111111221111 2222211 11110 0 001112233333344444445566789999999999
Q ss_pred hHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHH
Q 022445 240 AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 279 (297)
Q Consensus 240 s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~ 279 (297)
+...+++|+++.++|++++||+++..+++|+++++.|+.+
T Consensus 241 ~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 241 VALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred EeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999875
No 16
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.91 E-value=4.4e-23 Score=162.33 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=236.1
Q ss_pred chhhhHHHHHHhHHHhhc--CCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022445 2 WYFLNVIFNILNKRIYNY--FPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFA 79 (297)
Q Consensus 2 w~~~s~~~~~~~K~~~~~--~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 79 (297)
||+.|..+++.||++++. |.-...+.+.|...+...+....+.+..+- +....|.+++.+++.........-+++
T Consensus 14 Yc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~f---R~t~aK~WfpiSfLLv~MIyt~SKsLq 90 (309)
T COG5070 14 YCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEF---RLTKAKKWFPISFLLVVMIYTSSKSLQ 90 (309)
T ss_pred HHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhe---ehhhhhhhcCHHHHHHHHHHhccccee
Confidence 688899999999999985 555678889999888777666554443332 244556778999999999999999999
Q ss_pred cchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeeccccc-------chHHHHHHHHHHHHHHHHH
Q 022445 80 AVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS-------FNWTGFISAMISNISFTYR 152 (297)
Q Consensus 80 ~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~-------~~~~G~l~~l~a~~~~a~~ 152 (297)
|.+++.+++.+++..+.++.....++|.|.+..+..+.++++...+...++|.+ .-..|+++....++..|.+
T Consensus 91 yL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~Nclssaaf 170 (309)
T COG5070 91 YLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAF 170 (309)
T ss_pred eeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHH
Confidence 999999999999999999999999999999999999999999999999888762 1236999999999999999
Q ss_pred HHHHHHhh--ccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022445 153 SIYSKKAM--TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNT 230 (297)
Q Consensus 153 ~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 230 (297)
....||.. .+....+.++|.++.+.++++.+...+|++.... . ...-.......++..|+++.+..+..-++
T Consensus 171 VL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n--~----annl~~d~l~am~ISgl~svgiSy~saWc 244 (309)
T COG5070 171 VLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGN--L----ANNLSVDSLMAMFISGLCSVGISYCSAWC 244 (309)
T ss_pred HHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcch--h----hcCCChHHHHHHHHHHHHHhhhhhcccee
Confidence 99999876 4677889999999999999999999988765321 1 11111223567888899999999999999
Q ss_pred hhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHHHHH
Q 022445 231 LERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEE 290 (297)
Q Consensus 231 ~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~~ 290 (297)
++-++++++++++.++.....+.|.++|||+.+...+..+.+-..+..+|..++.+++++
T Consensus 245 vrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~ 304 (309)
T COG5070 245 VRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQN 304 (309)
T ss_pred EeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999886664433
No 17
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.9e-24 Score=174.97 Aligned_cols=284 Identities=19% Similarity=0.300 Sum_probs=241.1
Q ss_pred hhhHHHHHHhHHHhhc----CCchHHHHHHHHHHHHHHHHHHHhhC--CC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Q 022445 4 FLNVIFNILNKRIYNY----FPYPYFVSVIHLLVGVVYCLVSWAVG--LP-----KRAPIDSKLLKLLIPVAVCHALGHV 72 (297)
Q Consensus 4 ~~s~~~~~~~K~~~~~----~~~p~~~~~~~~~~~~l~l~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (297)
..|++..+.||++++. .+.|.++++.|++....++...-... .| ...+.+.+..+...+.++.+..+..
T Consensus 38 v~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~ 117 (347)
T KOG1442|consen 38 VTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMIS 117 (347)
T ss_pred eeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehh
Confidence 5688999999999985 56899999999999988877643221 11 1123666788999999999999999
Q ss_pred hhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeeccc---ccchHHHHHHHHHHHHHH
Q 022445 73 TSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTGFISAMISNISF 149 (297)
Q Consensus 73 ~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~---~~~~~~G~l~~l~a~~~~ 149 (297)
+.+..++|+|++.+++=+++..+|+.+++++++|+|-+.....+..+++.|.-+-...| .+..+.|.++++.|.++-
T Consensus 118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~v 197 (347)
T KOG1442|consen 118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAV 197 (347)
T ss_pred ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877666 356789999999999999
Q ss_pred HHHHHHHHHhhccCC--chhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q 022445 150 TYRSIYSKKAMTDMD--STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLA 227 (297)
Q Consensus 150 a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (297)
|+..+..||.....+ -+....|+++.+.++.+|.....+..+...+ ++..+....|..+...|++++..++..
T Consensus 198 Alnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~-----~~~l~a~~Fw~~mtLsglfgF~mgyvT 272 (347)
T KOG1442|consen 198 ALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVG-----FPHLPAIKFWILMTLSGLFGFAMGYVT 272 (347)
T ss_pred HHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcC-----cccchHHHHHHHHHHHHHHHHHhhhee
Confidence 999999998775543 4478899999999999998776544332211 123444567888889999999999999
Q ss_pred HHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 022445 228 TNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKR 292 (297)
Q Consensus 228 ~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~~~~ 292 (297)
.+-+|-+||.++.+....+.....+++..+++|..+..-|-|-.+++.|...|.+.++++.+++.
T Consensus 273 g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 273 GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999998777655543
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=3.9e-20 Score=159.82 Aligned_cols=259 Identities=18% Similarity=0.194 Sum_probs=188.7
Q ss_pred HHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHH
Q 022445 11 ILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIK 90 (297)
Q Consensus 11 ~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~ 90 (297)
...|...++...+......|...+.....+....++.++++..++.++.....++.......+.+.++++++++.++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (292)
T COG0697 24 IALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLII 103 (292)
T ss_pred HHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34444444433345566669888887744444332211222222234456666666788899999999999999999999
Q ss_pred hhHHHHHHHHHH-HHhCCcCChHHHHHHHHHHhhhheeecccccch---HHHHHHHHHHHHHHHHHHHHHHHhhccCCch
Q 022445 91 ALEPFFNAAASQ-FILGQQLPLTLWLSLAPVVIGVSMASLTELSFN---WTGFISAMISNISFTYRSIYSKKAMTDMDST 166 (297)
Q Consensus 91 ~~~pi~~~i~~~-~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~---~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~ 166 (297)
++.|+++.+++. +++|||++++++.++++++.|+.++..++...+ ..|+.+++.+++++|.+.+..|+.. +.++.
T Consensus 104 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~ 182 (292)
T COG0697 104 GLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS-RLGPV 182 (292)
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChH
Confidence 999999999997 777999999999999999999999988765442 5899999999999999999999987 66666
Q ss_pred hHHH-HHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHH-HHHHHHHHhhccchhHHhHHhh
Q 022445 167 NIYA-YISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHL-YNQLATNTLERVAPLTHAVGNV 244 (297)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~s~~~~ 244 (297)
.... +..........+... ...+ .. .....+......++.... .+...+..+++.++...+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~----------~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 249 (292)
T COG0697 183 TLALLLQLLLALLLLLLFFL--SGFG-AP----------ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSL 249 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cccc-cc----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 6665 443322222222111 1111 00 011123444445555553 4566677899999999999999
Q ss_pred hhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHh
Q 022445 245 LKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 245 ~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
.+|+++.+++++++||+++..+++|+.+++.|+.+.+..
T Consensus 250 ~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 250 LEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998765
No 19
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.88 E-value=4.9e-20 Score=156.60 Aligned_cols=229 Identities=11% Similarity=0.048 Sum_probs=159.8
Q ss_pred HHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHh-hCCCC----C-CCC-CHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022445 8 IFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWA-VGLPK----R-API-DSKLLKLLIPVAVCHALGHVTSNVSFAA 80 (297)
Q Consensus 8 ~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~-~~~~~----~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~ 80 (297)
......|. .++.+ |..++++|+.++.+++.+... .++++ + ++. +++.+......|++...++.+.++|+++
T Consensus 16 ~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~ 93 (256)
T TIGR00688 16 YMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNN 93 (256)
T ss_pred HHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567787 44554 899999999999877665432 22211 0 111 1222344666777788899999999999
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022445 81 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAM 160 (297)
Q Consensus 81 ~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~ 160 (297)
+++++++++.++.|+++++++++++|||++++++.+++++++|++++..++.+.+ .+++.++++||.|.+..||..
T Consensus 94 ~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~~~ 169 (256)
T TIGR00688 94 GSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKALK 169 (256)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999998754433222 357889999999999999975
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHH----HhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 022445 161 TDMDSTNIYAYISIIALFVCIPPAI----IVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAP 236 (297)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 236 (297)
++ +..+... +.....|... ..+.... +.......|..++..|+++...+.+...++|+.++
T Consensus 170 ~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a 234 (256)
T TIGR00688 170 NT-DLAGFCL-----ETLSLMPVAIYYLLQTDFATV---------QQTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPL 234 (256)
T ss_pred CC-CcchHHH-----HHHHHHHHHHHHHHHhccCcc---------cccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 43 3332221 1122222221 1111110 00011112445555566655566777889999999
Q ss_pred hHHhHHhhhhhHHHhhhhHhh
Q 022445 237 LTHAVGNVLKRVFVIGFSILA 257 (297)
Q Consensus 237 ~~~s~~~~~~~v~~~~~~~~~ 257 (297)
.+.+...+++|+++.+++.+.
T Consensus 235 ~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 235 NLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999764
No 20
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.87 E-value=3.2e-20 Score=149.08 Aligned_cols=251 Identities=15% Similarity=0.172 Sum_probs=202.6
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhH
Q 022445 14 KRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALE 93 (297)
Q Consensus 14 K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~ 93 (297)
|.++...+ |.-.+++|..++.+.+.+.. +|.+++.+++.++.....|+.....+.+++.+++.+|.+++..+-.+.
T Consensus 32 k~LFP~vG-~~g~t~lRl~~aaLIll~l~---RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~G 107 (292)
T COG5006 32 KSLFPLVG-AAGVTALRLAIAALILLALF---RPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTG 107 (292)
T ss_pred HHHccccC-hhhHHHHHHHHHHHHHHHHh---hHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcc
Confidence 44443333 78999999999998887776 477788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc--c-ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHH
Q 022445 94 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT--E-LSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYA 170 (297)
Q Consensus 94 pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~--~-~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~ 170 (297)
|+.++.++. +|..-.-|.+ +.+.|+.++.-. + .+.|..|..+++.++.||+.|.+..||..+..+......
T Consensus 108 PL~vA~~~s----Rr~~d~vwva--LAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a 181 (292)
T COG5006 108 PLAVALLSS----RRLRDFVWVA--LAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVA 181 (292)
T ss_pred HHHHHHHhc----cchhhHHHHH--HHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHH
Confidence 999988774 5554444554 556666655432 2 366899999999999999999999999987778888999
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHhHHhhhhhHH
Q 022445 171 YISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYN-QLATNTLERVAPLTHAVGNVLKRVF 249 (297)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~v~ 249 (297)
..+.++.++.+|+.....++.... +.........++++...- .+...+++|.++-+.++...+||.+
T Consensus 182 ~gm~vAaviv~Pig~~~ag~~l~~------------p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~ 249 (292)
T COG5006 182 VGMLVAALIVLPIGAAQAGPALFS------------PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPAL 249 (292)
T ss_pred HHHHHHHHHHhhhhhhhcchhhcC------------hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHH
Confidence 999999999999887655443322 234444555566655543 4556788999999999999999999
Q ss_pred HhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 250 VIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 250 ~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
+.+.|++++||++|..||.|++.+++++.-.+...+|
T Consensus 250 aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 250 AALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999999999998876655443
No 21
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.83 E-value=8.3e-20 Score=145.13 Aligned_cols=255 Identities=16% Similarity=0.157 Sum_probs=206.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHH
Q 022445 20 FPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAA 99 (297)
Q Consensus 20 ~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i 99 (297)
|.+...+.+.|+.+..++.-..... +++.+.++..-+.....++-+.+.+...|.|++++|.++..+-+++.|+-+++
T Consensus 50 FTfalaLVf~qC~~N~vfAkvl~~i--r~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi 127 (337)
T KOG1580|consen 50 FTFALALVFFQCTANTVFAKVLFLI--RKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI 127 (337)
T ss_pred ehHHHHHHHHHHHHHHHHHHhheee--cccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence 6677889999999988876444332 33344555556778899999999999999999999999999999999999999
Q ss_pred HHHHHhCCcCChHHHHHHHHHHhhhheeecccc-------cchHHHHHHHHHHHHHHHHHHHHHHHhhccC--CchhHHH
Q 022445 100 ASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-------SFNWTGFISAMISNISFTYRSIYSKKAMTDM--DSTNIYA 170 (297)
Q Consensus 100 ~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~-------~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~ 170 (297)
++.++.|++++++++..++.++.|+++....+. +....|-++.++|-...++....+++....+ +...+++
T Consensus 128 lGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~ 207 (337)
T KOG1580|consen 128 LGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMF 207 (337)
T ss_pred eehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHH
Confidence 999999999999999999999999999876432 2235788999999999999999999987544 4568899
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHH
Q 022445 171 YISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFV 250 (297)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 250 (297)
+.++.+++.+.....+.++..-+.+ + ...-+..++.+...++.+.+-+...+..+...+|.+-|+....+..++
T Consensus 208 ~~NlwStL~Lg~g~lfTGElweF~y-F-----~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFT 281 (337)
T KOG1580|consen 208 YTNLWSTLYLGAGLLFTGELWEFFY-F-----VQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFT 281 (337)
T ss_pred HHHHHHHHHhhhhheehhhHHHHHH-H-----HHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHH
Confidence 9999999887765555433221111 0 111233456666778888888877788889999999999999999999
Q ss_pred hhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 251 IGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 251 ~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
++.|+++|+++++..||+|.++++.|...=..
T Consensus 282 il~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 282 ILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 99999999999999999999999999876443
No 22
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.83 E-value=3.7e-18 Score=140.95 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=210.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHH
Q 022445 20 FPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAA 99 (297)
Q Consensus 20 ~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i 99 (297)
|.+|.++.+.|-+.+.+.-...... .+.....++.++.....++....+..+++.|++|++-++..+.+++..+.+++
T Consensus 48 F~~~~fL~~~q~l~~~~~s~~~l~~--~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 48 FEHSLFLVFCQRLVALLVSYAMLKW--WKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhc--ccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 6789999999999988877544332 22223344566777888999999999999999999999999999999999999
Q ss_pred HHHHHhCCcCChHHHHHHHHHHhhhheeecc---cc------cchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCchhH
Q 022445 100 ASQFILGQQLPLTLWLSLAPVVIGVSMASLT---EL------SFNWTGFISAMISNISFTYRSIYSKKAMTD--MDSTNI 168 (297)
Q Consensus 100 ~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~---~~------~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~--~~~~~~ 168 (297)
.+.++.|+|++.++++...++..|+.+.... |. +....|+.+...+-++.++-+..++++.++ +++.++
T Consensus 126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~m 205 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHM 205 (327)
T ss_pred HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHH
Confidence 9999999999999999999999999976542 11 235799999999999999999999999864 678899
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhh-hchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhh
Q 022445 169 YAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISK-VGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKR 247 (297)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 247 (297)
+++.++.+++......+..+... ++++. ..-++.+..++..+.++..-+...+..+++-+|.+....+..|.
T Consensus 206 M~~vNLf~~i~~~~~li~qg~~~-------~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk 278 (327)
T KOG1581|consen 206 MFGVNLFSAILNGTYLILQGHLL-------PAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRK 278 (327)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCc-------hHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHH
Confidence 99999999988877644332221 11121 11234566677777777777877777999999999999999999
Q ss_pred HHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 248 VFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 248 v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
.+++.++.+.+|++++..|+.|..+++.|+.+=.+.+++
T Consensus 279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999888876665555
No 23
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.81 E-value=2.1e-17 Score=142.50 Aligned_cols=234 Identities=17% Similarity=0.198 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHH-HhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHh-hHHHHHHHHHHHHhCC
Q 022445 30 HLLVGVVYCLVS-WAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKA-LEPFFNAAASQFILGQ 107 (297)
Q Consensus 30 ~~~~~~l~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e 107 (297)
|..++.+++... ...+.|+ +.+++.+..-+..|+....++.+++.+.++++++.+..+.+ ++|+++.+.+.+++||
T Consensus 33 ~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e 110 (290)
T TIGR00776 33 GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGE 110 (290)
T ss_pred HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 666666555443 2223222 22355666677778888999999999999999999998887 8899999999999999
Q ss_pred cCChHH----HHHHHHHHhhhheeeccccc-------ch-HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHH---HHH
Q 022445 108 QLPLTL----WLSLAPVVIGVSMASLTELS-------FN-WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIY---AYI 172 (297)
Q Consensus 108 ~~s~~~----~~~~~~~~~Gv~~~~~~~~~-------~~-~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~---~~~ 172 (297)
|.++++ +.|+++.++|+++....+.+ .+ ..|++++++|+++|+.|.+..|+. ++||.+.. .+.
T Consensus 111 ~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g 188 (290)
T TIGR00776 111 WSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIG 188 (290)
T ss_pred ccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHH
Confidence 999999 99999999999988653221 22 679999999999999999999986 47888874 443
Q ss_pred HHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHhHHhhhhhHHHh
Q 022445 173 SIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLE-RVAPLTHAVGNVLKRVFVI 251 (297)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~v~~~ 251 (297)
...+..+..+.. ....+ ......+..+. .|++....+..++...+ +.++.+.++....+|+.+.
T Consensus 189 ~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~ 253 (290)
T TIGR00776 189 MVIGGIIFNLGH-ILAKP-------------LKKYAILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIIST 253 (290)
T ss_pred HHHHHHHHHHHH-hcccc-------------hHHHHHHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHH
Confidence 444433333222 10001 01112233333 66664444455567778 9999999999999999999
Q ss_pred hhhHhhhCCcccchhh----hHHHHHHHHHHHHHH
Q 022445 252 GFSILAFGNKISTQTG----IGTVIAIAGVAAYSY 282 (297)
Q Consensus 252 ~~~~~~~~e~~s~~~~----~G~~li~~g~~~~~~ 282 (297)
++++++++|+.++.++ +|+++++.|+.+...
T Consensus 254 ~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 254 LGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 9999999999999999 999999999988654
No 24
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.81 E-value=4.6e-21 Score=154.94 Aligned_cols=267 Identities=18% Similarity=0.136 Sum_probs=205.7
Q ss_pred hhhhHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccch
Q 022445 3 YFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVA 82 (297)
Q Consensus 3 ~~~s~~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 82 (297)
|++|+.+.+.+|-+.. .|..+...|++.-.+...++....+.. .-.++...+.++..|+..+.+..+.++|++|++
T Consensus 47 ~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~~-v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~ms 122 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQP-VIGPEGKRKWLILRGFMGFTGVMLMYYALMYMS 122 (346)
T ss_pred HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEeee-eecCCCcEEEEEeehhhhhhHHHHHHHHHhhcc
Confidence 4556666666665543 476777777666555555543222111 112223334556778887888888999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc-----c------c---cchHHHHHHHHHHHHH
Q 022445 83 VSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-----E------L---SFNWTGFISAMISNIS 148 (297)
Q Consensus 83 ~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~-----~------~---~~~~~G~l~~l~a~~~ 148 (297)
.+.++++..++|.++.++++.++||+.|+.+.++..+.+.|++++..+ | . +.+..|...++.++++
T Consensus 123 laDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf 202 (346)
T KOG4510|consen 123 LADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLF 202 (346)
T ss_pred hhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhh
Confidence 999999999999999999999999999999999999999999998642 1 1 2356788889999999
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 022445 149 FTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLAT 228 (297)
Q Consensus 149 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 228 (297)
-|.-.++.|+..|+.|..-...|..+.+.+..+.........+..+. + .-+..+...|++++..+++..
T Consensus 203 ~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~c---------g--kdr~l~~~lGvfgfigQIllT 271 (346)
T KOG4510|consen 203 GASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHC---------G--KDRWLFVNLGVFGFIGQILLT 271 (346)
T ss_pred hhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCcc---------c--cceEEEEEehhhhhHHHHHHH
Confidence 99999999999999998888888888887776665555443332211 1 114555666999999998888
Q ss_pred HHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 229 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 229 ~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
..+++-.+...++..+...+++.++.+++|||.+|+++++|+++++.+.+.....|
T Consensus 272 m~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 272 MGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 89999888889999999999999999999999999999999999998887765543
No 25
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.79 E-value=5.1e-16 Score=128.29 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=194.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hCC-CCCC--CCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHH
Q 022445 23 PYFVSVIHLLVGVVYCLVSWA-VGL-PKRA--PIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNA 98 (297)
Q Consensus 23 p~~~~~~~~~~~~l~l~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ 98 (297)
+..+...|..-+..++..... .++ ++.+ ..+++.+......+++...+...+.+|.++--+-.++.=....|++..
T Consensus 34 ~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~V 113 (293)
T COG2962 34 ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNV 113 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHH
Confidence 577888888877666544322 111 1111 122334556666777788899999999999888888888899999999
Q ss_pred HHHHHHhCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 022445 99 AASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALF 178 (297)
Q Consensus 99 i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 178 (297)
+++.+++|||+++.||+++.++.+|+....+..++..+..+.+ ++.|+.|...-|+. ++|+.+-.......-.+
T Consensus 114 llG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p 187 (293)
T COG2962 114 LLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYGLLRKKL--KVDALTGLTLETLLLLP 187 (293)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHHHHHhc--CCchHHhHHHHHHHHhH
Confidence 9999999999999999999999999999888888888766655 45699999776664 67888888887777666
Q ss_pred HHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhh
Q 022445 179 VCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAF 258 (297)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~ 258 (297)
..+.+....+..... ...+....+..+...|+.+..--.+...+-|+++-.+.++..+.+|..-.+++++++
T Consensus 188 ~al~yl~~l~~~~~~--------~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~ 259 (293)
T COG2962 188 VALIYLLFLADSGQF--------LQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIF 259 (293)
T ss_pred HHHHHHHHHhcCchh--------hhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666665555433210 111223346677777877776666666688999999999999999999999999999
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHhhHHHHHH
Q 022445 259 GNKISTQTGIGTVIAIAGVAAYSYIKAQMEEE 290 (297)
Q Consensus 259 ~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~~ 290 (297)
||+++..+....+.+..|+.+|..+..+++++
T Consensus 260 ~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 260 GEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887665443
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.78 E-value=8.3e-17 Score=134.55 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc--
Q 022445 55 KLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-- 132 (297)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~-- 132 (297)
+....+..++++|..++.+.+.+++++++++++++.++..+++++++++++|||++++||.++.+.++|+++...++.
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 345566777999999999999999999999999999999999999999999999999999999999999998754211
Q ss_pred ---------------cchHHHHHHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHHHHHHHHhcchhhhhc
Q 022445 133 ---------------SFNWTGFISAMISNISFTYRSIYSKKAMTDM--DSTNIYAYISIIALFVCIPPAIIVEGPQLIKH 195 (297)
Q Consensus 133 ---------------~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (297)
+....|.++.+.++++.++..++.||..|+- +....+...+..+.+..++.....+.....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~ 174 (244)
T PF04142_consen 95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISES 174 (244)
T ss_pred cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence 1135899999999999999999999999764 33334445556666666555444444333222
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHH
Q 022445 196 GLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVI 272 (297)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~l 272 (297)
++ ++.++.. .|..++..++.+. ..-..+|+.+...-+....+..+.+.+.++++||.++|....+|..+
T Consensus 175 g~---f~G~~~~-~~~~i~~~a~gGl----lva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 175 GF---FHGYSWW-VWIVIFLQAIGGL----LVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred Cc---hhhcchH-HHHHHHHHHHhhH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 21 1122221 2222232233333 33347799999999999999999999999999999999999999765
No 27
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.74 E-value=5e-16 Score=126.76 Aligned_cols=226 Identities=18% Similarity=0.243 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc-----
Q 022445 58 KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL----- 132 (297)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~----- 132 (297)
+..++.+++...+..+.+.++.+++++.+|+++....+|+.+++.-+++++++.+||+++....+|+++....|.
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 456778999999999999999999999999999999999999999999999999999999999999998866432
Q ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHh----cc------hhhhhc
Q 022445 133 -----SFNWTGFISAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIV----EG------PQLIKH 195 (297)
Q Consensus 133 -----~~~~~G~l~~l~a~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~ 195 (297)
+.-..|+++.+++-+..|.+.++.||..+ +++|.+...|..+.+.+.+....... .+ ++-..+
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e 246 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE 246 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh
Confidence 22368999999999999999999999885 47899999999988854433332221 11 111112
Q ss_pred chhhhhhhhchhHHHHH-HHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHH
Q 022445 196 GLSDAISKVGMVKFISD-LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAI 274 (297)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~ 274 (297)
++.+.+........... +...-+....+|+......|..|+.+..+...++..+..+++.....|.+...|+.|.++.+
T Consensus 247 D~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi 326 (372)
T KOG3912|consen 247 DWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILI 326 (372)
T ss_pred hHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333332222221 22122233346677777779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 022445 275 AGVAAYSYI 283 (297)
Q Consensus 275 ~g~~~~~~~ 283 (297)
.|+++|+-.
T Consensus 327 ~Gi~lY~~i 335 (372)
T KOG3912|consen 327 MGIILYNQI 335 (372)
T ss_pred HHHHHHHHH
Confidence 999999843
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.73 E-value=4.8e-15 Score=125.97 Aligned_cols=223 Identities=13% Similarity=0.149 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc---c--
Q 022445 57 LKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT---E-- 131 (297)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~---~-- 131 (297)
......+++.|++++.+.+.++.+.+++++++..++..+.+++++.+++|||.+++||.++++...|+.+...+ +
T Consensus 92 ~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 92 TLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 44566678999998889999999999999999999999999999999999999999999999999999987621 1
Q ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhh
Q 022445 132 ------LSFNWTGFISAMISNISFTYRSIYSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISK 203 (297)
Q Consensus 132 ------~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (297)
.+..+.|....+.++...++..++.||.+|+ .+-+-.+.-.+..|.+..+.-....|+.... +.+.+..
T Consensus 172 a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~---~~gff~G 248 (345)
T KOG2234|consen 172 AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN---EYGFFYG 248 (345)
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccc---cCCcccc
Confidence 1234789999999999999999999999965 3333344444555666655555555544432 1222222
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHh
Q 022445 204 VGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
++.. .|..++..+.-+...+ ..+|+.+...-+....+..+++.+.|+.++|.++|....+|..+++.++.+|+..
T Consensus 249 ~s~~-vw~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~ 323 (345)
T KOG2234|consen 249 YSSI-VWLVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLY 323 (345)
T ss_pred ccHH-HHHHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcC
Confidence 2222 2334444444333333 3668899998899999999999999999999999999999999999999999976
Q ss_pred hHHH
Q 022445 284 KAQM 287 (297)
Q Consensus 284 ~~~~ 287 (297)
|.++
T Consensus 324 P~~~ 327 (345)
T KOG2234|consen 324 PARD 327 (345)
T ss_pred Cccc
Confidence 6654
No 29
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.71 E-value=2.2e-16 Score=133.94 Aligned_cols=224 Identities=17% Similarity=0.219 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc---
Q 022445 56 LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL--- 132 (297)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~--- 132 (297)
..+..+....+.+..+..++.|+.+++++..+++.+++-+|+..++.++..||.+..+.+++.+.+.|+++...+|.
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 44555666667788999999999999999999999999999999999999999999999999999999999977643
Q ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHHHhhccC----CchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhh
Q 022445 133 -----SFNWTGFISAMISNISFTYRSIYSKKAMTDM----DSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISK 203 (297)
Q Consensus 133 -----~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (297)
+....|.++++.+++.||.|.++.||-.++. |-.....+..+...+++-|..+..+....... +.
T Consensus 238 ~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F------~l 311 (416)
T KOG2765|consen 238 SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERF------EL 311 (416)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc------cC
Confidence 3347999999999999999999999987554 33334445555555555555444332211010 11
Q ss_pred hchhHHHHHHHHHHH-HHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 204 VGMVKFISDLFWVGM-FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 204 ~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
.+... ...++..+. ......++.-.++-.++|....+...+....+++.+.++-|.++|+.+++|...+++|.++.++
T Consensus 312 P~~~q-~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 312 PSSTQ-FSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred CCCce-eEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 11111 233333333 3344447777788899999999999999999999999999999999999999999999999987
Q ss_pred hhHH
Q 022445 283 IKAQ 286 (297)
Q Consensus 283 ~~~~ 286 (297)
....
T Consensus 391 ~~~~ 394 (416)
T KOG2765|consen 391 SSEN 394 (416)
T ss_pred cccc
Confidence 6543
No 30
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.69 E-value=1.2e-15 Score=119.46 Aligned_cols=145 Identities=32% Similarity=0.465 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------cCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhc-hhHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAMT-------DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVG-MVKF 209 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 209 (297)
|.++++.|.++.|++.++.|+..+ +.|+.++..+.+..+.+.++|.....|+++..+......-++.. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 778999999999999999999874 46788999999999999999999998887644332111100111 4456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 210 ISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
+..++..|++++..+...+.+++++||.++++.+.+|.+..++.|++++||++|..+++|.++.+.|...|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 7888888999999999999999999999999999999999999999999999999999999999999999975
No 31
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.2e-15 Score=121.53 Aligned_cols=266 Identities=17% Similarity=0.182 Sum_probs=202.6
Q ss_pred HHHhHHHhhc--C-CchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHH
Q 022445 10 NILNKRIYNY--F-PYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFT 86 (297)
Q Consensus 10 ~~~~K~~~~~--~-~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 86 (297)
.+..+.+++. | |+.|.+|+.|+++-..+-+..+..-.++++..+ ||....++.+....+.+.+-++.|++.++.
T Consensus 59 Gy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP---~rtY~~la~~t~gtmGLsn~SlgYLNYPtQ 135 (367)
T KOG1582|consen 59 GYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIP---WRTYVILAFLTVGTMGLSNGSLGYLNYPTQ 135 (367)
T ss_pred HHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecc---hhHhhhhHhhhhhccccCcCccccccCcHH
Confidence 3445555553 5 367999999999876665554433233433333 567788888989999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc----cchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022445 87 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL----SFNWTGFISAMISNISFTYRSIYSKKAMTD 162 (297)
Q Consensus 87 ~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~----~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~ 162 (297)
.+.+++..+-+++.+.++-++|+.+.++.+..++.+|.++....|. +++..|..+.-.|-++.|.-.-.+||.++.
T Consensus 136 viFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~ 215 (367)
T KOG1582|consen 136 VIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKM 215 (367)
T ss_pred HHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999999998876553 678899999999999999999999998854
Q ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhcc-hhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 022445 163 --MDSTNIYAYISIIALFVCIPPAIIVEG-PQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTH 239 (297)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 239 (297)
-+..++.+|...++.+.++......++ .+.+.. -..+........+..+..+++-.......++..++..+
T Consensus 216 ~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~f------caehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~a 289 (367)
T KOG1582|consen 216 NPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTF------CAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIA 289 (367)
T ss_pred CCCCcceEEEeeecccHHHHHHHHHhcccchhhhHH------HHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHH
Confidence 345678888888888777666555432 221111 11111112333333344444444444456688899999
Q ss_pred hHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 240 AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 240 s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
......+..+++++|+++|.+++|.+..-|..++..|+.+--+.+
T Consensus 290 atvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 290 ATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999865544
No 32
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.65 E-value=5e-16 Score=126.57 Aligned_cols=259 Identities=14% Similarity=0.110 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhccc-chhhHHHHHHhhHHHHHHHHHH
Q 022445 24 YFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAA-VAVSFTHTIKALEPFFNAAASQ 102 (297)
Q Consensus 24 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~l~~~~pi~~~i~~~ 102 (297)
..+|+.||++...-=+++. .+....+ ++-..|.+...-..++..+.++|.++++ +|.+...+.++..++.++++++
T Consensus 34 NLITFaqFlFia~eGlif~--skf~~~k-~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~ 110 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFT--SKFFTVK-PKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGW 110 (330)
T ss_pred eehHHHHHHHHHHhceeee--ccccccC-CCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHH
Confidence 7899999987655433322 1111111 2223345566666777788899999997 9999999999999999999999
Q ss_pred HHhCCcCChHHHHHHHHHHhhhheeecc---cc---------c---c----hHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 022445 103 FILGQQLPLTLWLSLAPVVIGVSMASLT---EL---------S---F----NWTGFISAMISNISFTYRSIYSKKAMTDM 163 (297)
Q Consensus 103 ~~~~e~~s~~~~~~~~~~~~Gv~~~~~~---~~---------~---~----~~~G~l~~l~a~~~~a~~~v~~~~~~~~~ 163 (297)
+..|+|+|.+|+.++++..+|+++.... |. + . -..|+.+..+|-+..|...+++|...+++
T Consensus 111 il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ky 190 (330)
T KOG1583|consen 111 ILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKY 190 (330)
T ss_pred HhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999986431 11 0 0 14789999999999999999999988764
Q ss_pred --CchhHHHHHHHHHHHHHHHHHHH-hcchhhhhcchhhhhh--hhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 022445 164 --DSTNIYAYISIIALFVCIPPAII-VEGPQLIKHGLSDAIS--KVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLT 238 (297)
Q Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 238 (297)
++.|.++|....+.+..+...-- .+........-....+ ....+..|..++...+.-+..--..+....+.++.+
T Consensus 191 GKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLT 270 (330)
T KOG1583|consen 191 GKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLT 270 (330)
T ss_pred cCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceE
Confidence 67799999998876554332100 0001000000000001 112344556666655555554444455667889999
Q ss_pred HhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 239 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 239 ~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
.++.-.+|..++.++|...|++++++..|+|..+++.|.++|+-...
T Consensus 271 VTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~ 317 (330)
T KOG1583|consen 271 VTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN 317 (330)
T ss_pred EEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999975433
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.53 E-value=2.6e-15 Score=121.12 Aligned_cols=260 Identities=9% Similarity=0.078 Sum_probs=196.7
Q ss_pred HHHhHHHhhc-CCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHH
Q 022445 10 NILNKRIYNY-FPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHT 88 (297)
Q Consensus 10 ~~~~K~~~~~-~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 88 (297)
...+.++-.+ .+-|...+++.+..-.+..-+...++. +.-+..|++.+..++...-++.+-..|.||++....+.
T Consensus 34 a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~----~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~l 109 (336)
T KOG2766|consen 34 AFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR----KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIML 109 (336)
T ss_pred hhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh----HHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHH
Confidence 3445555554 567888888887766666555544322 34445678899999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022445 89 IKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL--------SFNWTGFISAMISNISFTYRSIYSKKAM 160 (297)
Q Consensus 89 l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~--------~~~~~G~l~~l~a~~~~a~~~v~~~~~~ 160 (297)
+-+-..+.+.+++|+++|.|+.+.++.|++++..|+++....|. +....|+.+.+.++-+||..++..|.+.
T Consensus 110 LDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflv 189 (336)
T KOG2766|consen 110 LDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV 189 (336)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence 99999999999999999999999999999999999999877553 2346899999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHh
Q 022445 161 TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHA 240 (297)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s 240 (297)
++.|..+.+....+.|+++..+- +..|......-.|++ . ....+...+.-+...-+.-..+|..+++...
T Consensus 190 kn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~--------~-i~~yl~f~L~MFllYsl~pil~k~~~aT~~n 259 (336)
T KOG2766|consen 190 KNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDS--------A-IFLYLRFALTMFLLYSLAPILIKTNSATMFN 259 (336)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehH--------H-HHHHHHHHHHHHHHHHhhHHheecCCceEEE
Confidence 99999999999999998887665 333433322211111 1 1112222333333333334466888888887
Q ss_pred HHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 241 VGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 241 ~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
+.-.....+++++ ..||-+.+|...+..+.+..|.++|+.+++
T Consensus 260 lslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 260 LSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred hhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 7777778888887 677888999999999999999999965433
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.38 E-value=2.4e-12 Score=100.24 Aligned_cols=221 Identities=13% Similarity=0.069 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeeccc--ccc
Q 022445 57 LKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE--LSF 134 (297)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~--~~~ 134 (297)
.+...+.+++....++.+..+++.++++.++.+..+..-++.+++++.+|+|....++.+.++.+.|++++...| ...
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 455667888888999999999999999999999999999999999999999999999999999999999998644 355
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH-----HHhcchhhhhcchhhhhhhhchhHH
Q 022445 135 NWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA-----IIVEGPQLIKHGLSDAISKVGMVKF 209 (297)
Q Consensus 135 ~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (297)
.+.|+.+++.|+...|+|.|..|+...+-+--+...+.++.+..-+.... +.+.+.+..+ ++. ...
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~q--------sFA-~~P 203 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQ--------SFA-AAP 203 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHH--------HHh-hCC
Confidence 78999999999999999999999998776666677777776654333222 1112211111 011 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 210 ISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
|.++...+.+...+++.....+..+.|...|+-+.+...-....+.++.+-..+.....|..++..|.++.-.++.+
T Consensus 204 WG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 204 WGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred chhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 56666666667777877777888899999999998888889999998887788999999999999998876654433
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.35 E-value=8.1e-12 Score=93.91 Aligned_cols=119 Identities=16% Similarity=0.289 Sum_probs=98.3
Q ss_pred HHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCHHHHHHHHHHHHH-HHHHHHhhhhhcccchhh
Q 022445 7 VIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPK-RAPIDSKLLKLLIPVAVC-HALGHVTSNVSFAAVAVS 84 (297)
Q Consensus 7 ~~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~ 84 (297)
....+.+|...++.+ |...+.+|+..+.+ +.+......++ ....+++.+......+.+ ...+..+.+.++++.+++
T Consensus 4 a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 81 (126)
T PF00892_consen 4 AIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISAS 81 (126)
T ss_pred eeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchh
Confidence 456788999999866 88999999999987 44433322222 245555666667777777 588999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 85 FTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 85 ~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
..+.+.++.|+++.+++++++||+++++++.|+++++.|+++.
T Consensus 82 ~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 82 IVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.34 E-value=9.7e-12 Score=90.08 Aligned_cols=135 Identities=20% Similarity=0.136 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 217 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (297)
..+++++|++++++..++.|--.++.||........+.....+..........+... .-.+..|..++.+|
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~---------~~~~k~~lflilSG 74 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGG---------EIGPKSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceeccc---------ccCcceehhhhHHH
Confidence 457899999999999999999889999999999999988888877777665544221 11233466777788
Q ss_pred HHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 218 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 218 i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
+.+-..++.+|+++|.-.+....-.+-..+++++++|++++||++|..+++|+.++.+|.++.+
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 8888888999999999999999999999999999999999999999999999999999987654
No 37
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.26 E-value=4.4e-11 Score=89.86 Aligned_cols=124 Identities=21% Similarity=0.251 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHH-HHHHHH
Q 022445 147 ISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMF-YHLYNQ 225 (297)
Q Consensus 147 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~ 225 (297)
++||.+.+..|+..++.|+.....++...+.+ .++.....+..+. ...+... +......+.+ ......
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~ 69 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPF---------KNLSPRQ-WLWLLFLGLLGTALAYL 69 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccc---------cCCChhh-hhhhhHhhccceehHHH
Confidence 46899999999999999999999999999988 6666655544321 1111122 2333334444 345556
Q ss_pred HHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 226 LATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 226 ~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
..+.++++.++...+....++|+++.++++++++|+++..+++|+.+++.|+.+.+
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 70 LYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999998764
No 38
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.26 E-value=5.8e-11 Score=98.67 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=125.3
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc--------------------cc-------c
Q 022445 81 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT--------------------EL-------S 133 (297)
Q Consensus 81 ~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~--------------------~~-------~ 133 (297)
++++.....++..|+++++.++...+||++..++++..+...|+...... +. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 46677788888899999999988888988899999988888888742211 11 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH-HH---hcchh-hhhcchhhhhhhhchhH
Q 022445 134 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA-II---VEGPQ-LIKHGLSDAISKVGMVK 208 (297)
Q Consensus 134 ~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~-~~~~~~~~~~~~~~~~~ 208 (297)
..+.|....+.+..+.+...++.|+..++.+.. .|..........+.. .. .+... ..+.++ ..+.+.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 153 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM---FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF-----FIGYPT 153 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc---hHHHHHHHHHHHHHHHHHHHhhcccchhhccCc-----ccCCch
Confidence 345677778888888899999999986553322 333333332222221 11 11111 101000 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHH
Q 022445 209 FISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 280 (297)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~ 280 (297)
....+. ......+......+|+.++...++....+++++.++|++++||+++..++.|..+++.|+.+|
T Consensus 154 ~~~~~~---~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWIVG---LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHH---HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 111111 122223334556889999999999999999999999999999999999999999999987664
No 39
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.25 E-value=3.4e-11 Score=89.07 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC---CCCCHHHHHHHHHHHHHHH-HHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHH
Q 022445 28 VIHLLVGVVYCLVSWAVGLPKR---APIDSKLLKLLIPVAVCHA-LGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF 103 (297)
Q Consensus 28 ~~~~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~ 103 (297)
.+|+..+.+.+......+++.+ +..+++.+......|.+.. .++.+++.|+++.| +....+.++.|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 4788888877766544322111 1122334555666677654 88999999999999 58889999999999999999
Q ss_pred HhCCcCChHHHHHHHHHHhhhheeeccccc
Q 022445 104 ILGQQLPLTLWLSLAPVVIGVSMASLTELS 133 (297)
Q Consensus 104 ~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~ 133 (297)
++|||++++++.++.++++|++++..+|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999887754
No 40
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.22 E-value=1.1e-10 Score=84.66 Aligned_cols=123 Identities=21% Similarity=0.251 Sum_probs=104.2
Q ss_pred hHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCHHHHHHHHHHHHHHHHHHHhhhhhcccchh
Q 022445 6 NVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAP--IDSKLLKLLIPVAVCHALGHVTSNVSFAAVAV 83 (297)
Q Consensus 6 s~~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 83 (297)
.....+..|.-+++.+ |.+-+..|-.+...++.......++.... .+++.|......|+..+.+..+++.|++.-.+
T Consensus 15 a~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~a 93 (140)
T COG2510 15 AGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKA 93 (140)
T ss_pred HHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 3455678888888776 88999999998887776655444433333 56777888888888899999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeec
Q 022445 84 SFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 129 (297)
Q Consensus 84 ~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~ 129 (297)
|....+-.++|+++.+++++++|||+|..+|+|++++.+|+++.+.
T Consensus 94 s~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 94 SRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred ceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999998753
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.19 E-value=7.2e-09 Score=86.74 Aligned_cols=210 Identities=17% Similarity=0.182 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHH-hhHHHHHHHHHHHHhCCcCChHHHH----HHHHHHhhhheee
Q 022445 54 SKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIK-ALEPFFNAAASQFILGQQLPLTLWL----SLAPVVIGVSMAS 128 (297)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~~~~~e~~s~~~~~----~~~~~~~Gv~~~~ 128 (297)
.+.+...+..|++...++..++.|++++++|.+..+. ..+-+.+.+.+.++++|..+..++. ++++.++|+.+.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 3667788889999999999999999999999987775 7888889999999999977766655 8889999999888
Q ss_pred ccccc--------chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhh
Q 022445 129 LTELS--------FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDA 200 (297)
Q Consensus 129 ~~~~~--------~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (297)
..|.+ ...-|....+++.+.|..|.+..|- .+.|+.+...=+++-..+..+.+....+ ....
T Consensus 122 ~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~-~~~~------- 191 (269)
T PF06800_consen 122 YQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSK-KPFF------- 191 (269)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhccc-cccc-------
Confidence 75532 1246899999999999999999776 4567777766554444333333333221 1111
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccch----hhhHHHHHHHH
Q 022445 201 ISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQ----TGIGTVIAIAG 276 (297)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~----~~~G~~li~~g 276 (297)
+...+.+.. .|++-...|..++.+.++.+....-.+..+..+++.+.|.++++|+=+.. .++|+++++.|
T Consensus 192 -~k~~~~nil-----~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G 265 (269)
T PF06800_consen 192 -EKKSWKNIL-----TGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIG 265 (269)
T ss_pred -ccchHHhhH-----HHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHh
Confidence 111122222 23333344455555668888888878888999999999999999987654 56788888887
Q ss_pred HHH
Q 022445 277 VAA 279 (297)
Q Consensus 277 ~~~ 279 (297)
.++
T Consensus 266 ~il 268 (269)
T PF06800_consen 266 AIL 268 (269)
T ss_pred hhc
Confidence 654
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.05 E-value=1.7e-08 Score=87.61 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=106.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHH
Q 022445 132 LSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFIS 211 (297)
Q Consensus 132 ~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (297)
.+....|.++.+.++++|+...+..|.. ++++|.+..+++...+.+.+.+........+... ........+.
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~ 74 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLK-------TLIQTPQKIF 74 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHH-------HHHcCHHHHH
Confidence 3445679999999999999999999765 7799999999999999887776654332111100 0010111122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 212 DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
.....+......+...+.+++++++...++..+..|++..++++++++|+++..+++|.++.++|+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 75 MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 2222233334456777889999999999999999999999999999999999999999999999998754
No 43
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.01 E-value=2.3e-08 Score=84.92 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 217 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (297)
|.++.++++++|+...+..|.. ++.||.++.++.+..+.+.+.+............. ..+..+....+......|
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIE----RLKRIQKRPLILSLLLCG 77 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHhCcccchHHHHHHHHH
Confidence 7889999999999999999984 67999999999999998887765544322111000 001111112233445556
Q ss_pred HHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 218 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 218 i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
++....+...+.+++++++.+.++..+..|+++.++++++++|+++..+++|..+.++|+.+..
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 6555666777888999999999999999999999999999999999999999999999987653
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.90 E-value=5.5e-08 Score=83.81 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHH
Q 022445 139 FISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM 218 (297)
Q Consensus 139 ~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (297)
+++.+.+++++|...+..||..++.++ ...+....+.+.+.|........... +.. ....+......+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPD--FLWWALLAHSVLLTPYGLWYLAQVGW--------SRL-PATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhcccCCC--------CCc-chhhHHHHHHHHH
Confidence 567899999999999999988776444 34555566666777766543111100 001 1122334444555
Q ss_pred HHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 219 FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
.........+.+.++.++...+...+..|+++.+++++++||+++..+++|..+++.|+.+...
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5556667777888999999999999999999999999999999999999999999999987654
No 45
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.82 E-value=1.9e-07 Score=79.37 Aligned_cols=118 Identities=20% Similarity=0.120 Sum_probs=91.3
Q ss_pred HHHHHHhHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH-HHHHHHhhhhhcccchhh
Q 022445 7 VIFNILNKRIYNYFPY-PYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVC-HALGHVTSNVSFAAVAVS 84 (297)
Q Consensus 7 ~~~~~~~K~~~~~~~~-p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~ 84 (297)
...++..|+..++.+. +.....+|+.++.+.+.+......++. ..+.+.+......+.+ ...+..+++.++++.+++
T Consensus 141 a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 219 (260)
T TIGR00950 141 ALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPS 219 (260)
T ss_pred HHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 3446678888776542 345555788888887777654433332 2345555555656666 467889999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhh
Q 022445 85 FTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVS 125 (297)
Q Consensus 85 ~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~ 125 (297)
.++.+..+.|+++.+++++++||++++.++.|..+.+.|+.
T Consensus 220 ~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 220 AASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999863
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.77 E-value=4.6e-08 Score=84.43 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheee
Q 022445 65 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 128 (297)
Q Consensus 65 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~ 128 (297)
+.+..+..+.+.|+.+.|.+..+.+.+..-++.++++..++|||++++++.|..+++.|.+++.
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 3467788999999999999999999999999999999999999999999999999999998764
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.66 E-value=1.5e-06 Score=77.09 Aligned_cols=135 Identities=14% Similarity=0.208 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-ccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAM-TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 216 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (297)
-++..+..-++|+...++.|..+ ..++|....++....++++++|+....+.....+ ... ...+..+...
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~--------~~~-~~~~~~l~l~ 84 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLP--------PLS-VSILSKIGLL 84 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccC--------cch-HHHHHHHHHH
Confidence 34556778889999999999988 4589999999999999999998876653221100 001 1123444445
Q ss_pred HHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhh------hCCcccchhhhHHHHHHHHHHHHH
Q 022445 217 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILA------FGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 217 ~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~------~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
|+++..++...+..++++++...++..+..|+++.++++++ ++|+++..+++|.++.++|+.+..
T Consensus 85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 65554555567789999999999999999999999999999 699999999999999999998754
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.63 E-value=1.3e-06 Score=64.06 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheee
Q 022445 65 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 128 (297)
Q Consensus 65 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~ 128 (297)
.++.....+...++++.|.+.+..+-++.|+++.+.+++++|||++++++.|+.++++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4467788999999999999999999999999999999999999999999999999999998764
No 49
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.49 E-value=5.1e-06 Score=72.04 Aligned_cols=119 Identities=22% Similarity=0.281 Sum_probs=85.7
Q ss_pred HHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH-HHHHHHhhhhhcccchhhHH
Q 022445 8 IFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVC-HALGHVTSNVSFAAVAVSFT 86 (297)
Q Consensus 8 ~~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~ 86 (297)
...+..|+..++.+ |.... +...++.+.+.+......+ ....+...+...+..+++ ...+..+++.++++.|++.+
T Consensus 162 ~~~v~~r~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~a 238 (293)
T PRK10532 162 IYILSGQRAGAEHG-PATVA-IGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTF 238 (293)
T ss_pred HHHHHHHHHhccCC-chHHH-HHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHH
Confidence 34556677765544 55554 4445555555554333222 122344444444556666 45678899999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeec
Q 022445 87 HTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 129 (297)
Q Consensus 87 ~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~ 129 (297)
+.+..+.|++..++++++++|+++..++.|..++++|++....
T Consensus 239 s~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 239 GTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988753
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.48 E-value=7.6e-06 Score=68.51 Aligned_cols=139 Identities=16% Similarity=0.146 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHH
Q 022445 135 NWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 214 (297)
Q Consensus 135 ~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (297)
...|+++++.|-+.|+.--.+.|-+ ++.++.++..+..+.+.+..+.........+... +....+..+....
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~-------~~~~~p~~~~~~~ 76 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELK-------QLLKQPKTLLMLA 76 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHhCcHHHHHHH
Confidence 3569999999999999999888866 8889999999999999888777665543332221 2233344445555
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 215 WVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 215 ~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
..+.....-.....++..+-...++|+-.+++|.+.+++|.++++|+++..|++...+..+|+..-.
T Consensus 77 l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~ 143 (293)
T COG2962 77 LTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT 143 (293)
T ss_pred HHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 5555444444556677788888999999999999999999999999999999999999999986543
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.45 E-value=6.8e-06 Score=71.32 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHH
Q 022445 137 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 216 (297)
Q Consensus 137 ~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (297)
.++++.+.++++|+...+..|...++++|.....+.+..+.+++++... .+...+ .+.. .....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~---~~~~~~---------~~~~----~~~~~ 67 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG---FPRLRQ---------FPKR----YLLAG 67 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc---cccccc---------ccHH----HHHHH
Confidence 4677889999999999999999989999999999999998888776421 111100 0111 11111
Q ss_pred HHHHHHHHHHHHHHh----hccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 217 GMFYHLYNQLATNTL----ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 217 ~i~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
+.....+....+... +..++.+.++..++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 222222222223233 456778889999999999999999999999999999999999999987653
No 52
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.45 E-value=6.7e-06 Score=61.78 Aligned_cols=121 Identities=12% Similarity=0.015 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHH
Q 022445 137 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 216 (297)
Q Consensus 137 ~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (297)
.|+++.+.+.++.+...++.|+-+++.++.+.... . ...+. ...+ + ...+..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~----~~~~~--~~~~-p--------------------~~~i~l 53 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F----IAALL--AFGL-A--------------------LRAVLL 53 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H----HHHHH--HHhc-c--------------------HHHHHH
Confidence 37889999999999999999998877654432211 0 00000 0000 0 001222
Q ss_pred HHHHHHHH-HHHHHHhhccchhHHhHHhhhhhHHHhhhhHh--hhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 217 GMFYHLYN-QLATNTLERVAPLTHAVGNVLKRVFVIGFSIL--AFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 217 ~i~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~--~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
|+..+... .....++++.+...........++...+.++. ++||++|+.+++|++++++|+.+.++.++
T Consensus 54 gl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 54 GLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 33333322 33345778999888877777777777777774 89999999999999999999999876433
No 53
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.41 E-value=1.9e-05 Score=68.42 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHH
Q 022445 139 FISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM 218 (297)
Q Consensus 139 ~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (297)
.+..+.-.+.|+...+..|...++.||.+..++....+++++++......... . . ...+......|.
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~-----------~-~~~~~~~~~~g~ 76 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-P-----------T-LRQWLNAALIGL 76 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-C-----------c-HHHHHHHHHHHH
Confidence 44567788999999999999888999999999999999988887654422111 0 0 011222333444
Q ss_pred HHH-HHHHHHHHHh-hccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 219 FYH-LYNQLATNTL-ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 219 ~~~-~~~~~~~~~~-~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
+.. ......+... +..++...++...+.|+++.+++.+ ++|+++..+++|..+.++|+.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 332 2233344455 8888888999999999999999985 7999999999999999999987754
No 54
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.39 E-value=2e-05 Score=70.03 Aligned_cols=136 Identities=13% Similarity=0.009 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 216 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (297)
-..+++.--.+...+++..|+..++.+ |..+..++..++.+.+.+......... .+ . + .....+..++..
T Consensus 50 ~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~-~~--~----~--~~~~~~~~llp~ 120 (350)
T PTZ00343 50 LALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKI-PR--I----K--SLKLFLKNFLPQ 120 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCC-CC--C----C--CHHHHHHHHHHH
Confidence 334444455555677888898888899 999999999999776655432211100 00 0 0 011123444455
Q ss_pred HHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 217 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 217 ~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
|++....+...+.+++++++..+++....+|+++++++.++++|+++..+++|++++++|+.+...
T Consensus 121 gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 121 GLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 655555455556788999999999999999999999999999999999999999999999987653
No 55
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.39 E-value=1.2e-05 Score=69.90 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHH
Q 022445 140 ISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMF 219 (297)
Q Consensus 140 l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (297)
++.++++++|+...+..|...++.||....++....+.+.+++... ..+. . +......|..
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~---~~~~------------~----~~~~~~~g~~ 67 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA---RPKV------------P----LNLLLGYGLT 67 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc---CCCC------------c----hHHHHHHHHH
Confidence 5678999999999999999888999999999999887766554321 1110 0 0111222332
Q ss_pred HHH-HHHHHHHHhhc-cchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 220 YHL-YNQLATNTLER-VAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 220 ~~~-~~~~~~~~~~~-~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
... .....+...++ .++...++.....|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 68 ISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 222 22233445555 5778888889999999999999999999999999999999999887653
No 56
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.37 E-value=0.00026 Score=62.03 Aligned_cols=227 Identities=12% Similarity=0.051 Sum_probs=140.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcC---C----hHHHHHHHHHHhh
Q 022445 52 IDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQL---P----LTLWLSLAPVVIG 123 (297)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~---s----~~~~~~~~~~~~G 123 (297)
.+.+.+...+..|++...++..+..+++++++|....+ ..++-+...++..++++|-. + ..-..|+++.++|
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999997766 58889999999999998633 2 3456788888899
Q ss_pred hheeec----ccc---------cchHHHHHHHHHHHHHHHHHH-------HHHHHhh-ccCCchhHHHHHHH---HHHHH
Q 022445 124 VSMASL----TEL---------SFNWTGFISAMISNISFTYRS-------IYSKKAM-TDMDSTNIYAYISI---IALFV 179 (297)
Q Consensus 124 v~~~~~----~~~---------~~~~~G~l~~l~a~~~~a~~~-------v~~~~~~-~~~~~~~~~~~~~~---~~~~~ 179 (297)
+++.+. .|. ....-|++.+++|.+.++.|. ...+... .+.|+.....-+.. .+.+.
T Consensus 148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~ 227 (345)
T PRK13499 148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAI 227 (345)
T ss_pred HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHH
Confidence 998776 332 123579999999999999999 4444321 23454443333332 33222
Q ss_pred H-HHHHHHhcchhhhhcchhhhhhhhc-----hhHHHHHHHHHHHHHHHHHHHHHHHhhccch----hHHhHHhhhhhHH
Q 022445 180 C-IPPAIIVEGPQLIKHGLSDAISKVG-----MVKFISDLFWVGMFYHLYNQLATNTLERVAP----LTHAVGNVLKRVF 249 (297)
Q Consensus 180 ~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~v~ 249 (297)
. +.........+ .+.++..+... ..+... ....|+.=+..+..+...-++.+. ....+.+.+..++
T Consensus 228 ~n~~~~~~~~~k~---~~~~~~~~~~~~~~~~~~n~l~-~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Vii 303 (345)
T PRK13499 228 TNLGFCFIRLAKN---KDLSLKADFSLAKPLLITNVLL-SALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLC 303 (345)
T ss_pred HHHHHHHHHHhhC---CCcccchhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHH
Confidence 1 11111100000 00000000000 122111 222244333444444444445522 2334555777789
Q ss_pred HhhhhHhhhCCccc------chhhhHHHHHHHHHHHHHHh
Q 022445 250 VIGFSILAFGNKIS------TQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 250 ~~~~~~~~~~e~~s------~~~~~G~~li~~g~~~~~~~ 283 (297)
+.+.|. +++|.=+ ...++|+++++.|..+....
T Consensus 304 stlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 304 GNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 999999 5999755 56799999999999887654
No 57
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.24 E-value=6e-05 Score=58.56 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=94.5
Q ss_pred hhHHHHHHhHHHhhc------CCchHHHHHHHHHHHHHHHHHH-HhhCCCCCCC-----------CCHHHHHHHHHHHHH
Q 022445 5 LNVIFNILNKRIYNY------FPYPYFVSVIHLLVGVVYCLVS-WAVGLPKRAP-----------IDSKLLKLLIPVAVC 66 (297)
Q Consensus 5 ~s~~~~~~~K~~~~~------~~~p~~~~~~~~~~~~l~l~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 66 (297)
.+..-.+..|..+++ -..|..+.......+.+.+.+. ...+.++..+ .+.+.+...+..+++
T Consensus 11 ~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (153)
T PF03151_consen 11 FSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLL 90 (153)
T ss_pred HHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 345556677877776 2356777777777776666554 2222222110 133456666777788
Q ss_pred HHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheee
Q 022445 67 HALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 128 (297)
Q Consensus 67 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~ 128 (297)
....+...+..++++++-+.+++.....+.+.+++.++++|+++.+++.|+++++.|+.+..
T Consensus 91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 88899999999999999999999999999999999999999999999999999999998754
No 58
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.24 E-value=4.6e-05 Score=56.14 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=57.8
Q ss_pred HHHHHHHHH-HHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 213 LFWVGMFYH-LYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 213 ~~~~~i~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
.+..|.+.. ......+.+.+..++ ..+....+.|+++.+++.++++|+++..++.|..++++|+.+....+.
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 333344443 444555667788885 677888899999999999999999999999999999999999877653
No 59
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.16 E-value=0.00011 Score=64.09 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q 022445 147 ISFTYRSIYSKKAMTD-MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQ 225 (297)
Q Consensus 147 ~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 225 (297)
.+....++++|...++ ..|......+...+.+...+... ...... +..... .+..+...|++......
T Consensus 12 ~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~-~~~~~~~~g~~~~~~~~ 80 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKR---------LKISSA-LLKLLLPVAIVHTIGHV 80 (302)
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCC---------CCCCHH-HHHHHHHHHHHHHHHHH
Confidence 3445566778888877 45777788887777666544311 111110 001111 23344445655555556
Q ss_pred HHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 226 LATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 226 ~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
..+.+++++++...++.....|+++.++++++++|+++..++.|.++.++|+.+..
T Consensus 81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 77789999999999999999999999999999999999999999999999997654
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.04 E-value=3.5e-05 Score=57.89 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHH--HhCCcCChHHHHHHHHHHhhhheeeccc
Q 022445 60 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF--ILGQQLPLTLWLSLAPVVIGVSMASLTE 131 (297)
Q Consensus 60 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~--~~~e~~s~~~~~~~~~~~~Gv~~~~~~~ 131 (297)
....-+++..+..++..+++..|++.+..+.+..+..+.+.++. ++||+++.++++|++++++|+++...++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 34444557788999999999999999999999999888888885 8999999999999999999999986543
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.01 E-value=8e-05 Score=64.42 Aligned_cols=132 Identities=13% Similarity=0.073 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 217 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (297)
|++++++++++|+...+..|+.. +.++.+.. ....+.++..........+. .+....+..-...|
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~------------~~~~~~~~~g~l~G 66 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPE------------FWALSIFLVGLLSG 66 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCc------------ccccHHHHHHHHHH
Confidence 67899999999999999999875 55555554 34445444443333322111 01122333344445
Q ss_pred HHHHHHHHHHHHHhhccchhHHhHHhh-hhhHHHhhhhHhhhCCcccchh----hhHHHHHHHHHHHHHHhh
Q 022445 218 MFYHLYNQLATNTLERVAPLTHAVGNV-LKRVFVIGFSILAFGNKISTQT----GIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 218 i~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~v~~~~~~~~~~~e~~s~~~----~~G~~li~~g~~~~~~~~ 284 (297)
..-...|..++.++++.+....-...+ +.++++.+++.++++|+.+..+ ++|.++++.|..+....+
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 554456677788889888877755555 7888999999999999999999 999999999998876553
No 62
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.00 E-value=3.2e-06 Score=68.74 Aligned_cols=217 Identities=14% Similarity=0.128 Sum_probs=145.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHH-hhHHHHHHHHHHHHhCCcCChHHH----HHHHHHHhhh
Q 022445 50 APIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIK-ALEPFFNAAASQFILGQQLPLTLW----LSLAPVVIGV 124 (297)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~~~~~e~~s~~~~----~~~~~~~~Gv 124 (297)
+..+...+..-+..|++...++..++-|.+++++|.+..+. .++-+-+.+++.+.+||-.+..+. .++++.+.|+
T Consensus 52 p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~ 131 (288)
T COG4975 52 PELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGI 131 (288)
T ss_pred CccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhh
Confidence 33455666677788899999999999999999999988774 778899999999999997776664 5788889999
Q ss_pred heeecccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcc
Q 022445 125 SMASLTEL--------SFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHG 196 (297)
Q Consensus 125 ~~~~~~~~--------~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (297)
.+.+..|. +....|+...+.|.+.|..|.+..+... .|..+...-+..-..+..+.+....++....++.
T Consensus 132 ~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~g~saiLPqAiGMv~~ali~~~~~~~~~~~K~t 209 (288)
T COG4975 132 YLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--VDGLSAILPQAIGMVIGALILGFFKMEKRFNKYT 209 (288)
T ss_pred eEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeecccc--ccchhhhhHHHHHHHHHHHHHhhcccccchHHHH
Confidence 99887664 1123688888899999999999888763 5555554444433333333333333223222221
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchh----hhHHHH
Q 022445 197 LSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQT----GIGTVI 272 (297)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~----~~G~~l 272 (297)
+.+. ..|..-..-|...+.+.++.+-.+.=-.+.+..+++.+-+.++++|+=|..+ ++|.++
T Consensus 210 ---------~~ni-----i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiil 275 (288)
T COG4975 210 ---------WLNI-----IPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIIL 275 (288)
T ss_pred ---------HHHH-----hhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHH
Confidence 1111 1232222334444444456655444345556778888899999999988765 567788
Q ss_pred HHHHHHHHHH
Q 022445 273 AIAGVAAYSY 282 (297)
Q Consensus 273 i~~g~~~~~~ 282 (297)
++.|..+...
T Consensus 276 ivvgai~lg~ 285 (288)
T COG4975 276 IVVGAILLGI 285 (288)
T ss_pred HHHHhhhhhe
Confidence 8887766543
No 63
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=2.6e-05 Score=66.12 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc
Q 022445 64 AVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 130 (297)
Q Consensus 64 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~ 130 (297)
-+.+.++....+.|+.+.|++..+.+.+++.+..++++..++|||.+....+|..++++|..++...
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 3447788999999999999999999999999999999999999999999999999999999988653
No 64
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.85 E-value=0.00022 Score=52.63 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeec
Q 022445 61 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 129 (297)
Q Consensus 61 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~ 129 (297)
...-+++..+..+...+++++|.+.+..+ ....-+.+.+.+.+++||+++..+++++.++++|++.+-.
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 45566678888999999999999998877 5789999999999999999999999999999999998744
No 65
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.83 E-value=0.00021 Score=52.27 Aligned_cols=56 Identities=18% Similarity=0.104 Sum_probs=49.0
Q ss_pred HHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 226 LATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 226 ~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
.....+++.+.........+.++.+.+.|++++||++|..+++|..++++|+.+..
T Consensus 53 ~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 53 LWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33457788988888776669999999999999999999999999999999998764
No 66
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.80 E-value=0.0012 Score=56.64 Aligned_cols=140 Identities=17% Similarity=0.128 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHH
Q 022445 136 WTGFISAMISNISFTYRSIYSKKAMTD-MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 214 (297)
Q Consensus 136 ~~G~l~~l~a~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (297)
..+....+..++.|+......|+..++ .+...........+.....+.... +...... ... . .+...+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~-~-~~~~~~ 74 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP--------ALR-P-WLLLLL 74 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc--------ccc-c-hHHHHH
Confidence 457778888889999999999988776 444455555666665553322221 1100000 000 0 123333
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhH-hhhCCcccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 215 WVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI-LAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 215 ~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~-~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
..+..........+..++++++...+......|++..+++. ++++|+++..++.|..+.+.|+.+....+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 33444444556667788999999999999999999999996 6779999999999999999999988765443
No 67
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.79 E-value=0.00054 Score=49.70 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 60 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 60 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
....-..+..+..+...+++++|++.+..+ .....+.+.+.+.+++||++++.++.++.+.+.|++.+
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344455677788889999999999997666 56779999999999999999999999999999999864
No 68
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.77 E-value=0.00034 Score=60.92 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhccC--C--chhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHH
Q 022445 149 FTYRSIYSKKAMTDM--D--STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYN 224 (297)
Q Consensus 149 ~a~~~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 224 (297)
+..+.+.+|++.++. + |..+.+.+.....+...+............ . .+.-....+.+.....
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~ 78 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRK---------I----PLKKYAILSFLFFLAS 78 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCc---------C----hHHHHHHHHHHHHHHH
Confidence 345778888887542 2 445666666666655555443332111100 0 1222233355555566
Q ss_pred HHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 225 QLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 225 ~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
.....+++.++..+..+....+++.+++.+.++++++.+..++.+..++.+|+.+....+.+
T Consensus 79 ~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 79 VLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred HHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 67777889999999999999999999999999999999999999999999999998876543
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.76 E-value=0.00036 Score=50.78 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeec
Q 022445 62 PVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 129 (297)
Q Consensus 62 ~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~ 129 (297)
..-+++..+..+...+++++|.+.+..+ ....-+.+.+.+++++||++++.++.++.+.++|++.+-.
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4455577778888999999999998877 5678999999999999999999999999999999998744
No 70
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.75 E-value=0.00056 Score=49.32 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheee
Q 022445 61 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 128 (297)
Q Consensus 61 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~ 128 (297)
...-.++..+..+...+++.+|.+.+..+ .....+.+.+.+.+++||++++.+++++.+.+.|++.+-
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 34456677788889999999999997766 568899999999999999999999999999999999763
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00035 Score=49.88 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheee
Q 022445 61 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 128 (297)
Q Consensus 61 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~ 128 (297)
...-+++..+..+...+++++|.+.+..+ .....+.+.+.+++++||+.+..+++++.+.++|++.+-
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 34445566777788999999999996665 677799999999999999999999999999999998753
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.63 E-value=0.0032 Score=47.95 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHH
Q 022445 139 FISAMISNISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 217 (297)
Q Consensus 139 ~l~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (297)
.++++.+..+-+.+..++-++.++.+ |..........+.+....+....+..+. +......+|. ...|
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~---------~~~~~~p~w~--~lGG 71 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSL---------ASLSSVPWWA--YLGG 71 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccccc---------chhccCChHH--hccH
Confidence 57789999999999999999988876 9999999999998888887776654421 1111111222 2246
Q ss_pred HHHHHHHHHHHHHhhccchhHHhHHhhh-hhHHHhhhhHh-hh---CCcccchhhhHHHHHHHHHHH
Q 022445 218 MFYHLYNQLATNTLERVAPLTHAVGNVL-KRVFVIGFSIL-AF---GNKISTQTGIGTVIAIAGVAA 279 (297)
Q Consensus 218 i~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~v~~~~~~~~-~~---~e~~s~~~~~G~~li~~g~~~ 279 (297)
+++..+-.......++.++......... .-+.+.+++.+ .+ ++++++.+++|..++++|+.+
T Consensus 72 ~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 72 LLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 6666655555667799999877654443 44556666665 22 357899999999999999863
No 73
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00085 Score=47.94 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=48.2
Q ss_pred Hhhccch-hHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHh
Q 022445 230 TLERVAP-LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 230 ~~~~~~~-~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
++|+.+- +.++++.-...+.+.+.|+++|||++|..+++|..++++|++..+..
T Consensus 50 alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 50 ALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 6677776 45689999999999999999999999999999999999999988754
No 74
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.62 E-value=0.00099 Score=58.34 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-chhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHH
Q 022445 136 WTGFISAMISNISFTYRSIYSKKAMTD-MD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDL 213 (297)
Q Consensus 136 ~~G~l~~l~a~~~~a~~~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (297)
+.+.+++-.-+++-+..++.+..+.++ .+ |....+..+..-.++..+......+.+. +. ..... . ++..
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~----~~---~~~~~-~-~w~y 82 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKK----WL---KVLKR-P-WWKY 82 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcccccc----ch---hhcch-h-HHHH
Confidence 345555555556666666666665533 33 4444555555544444444333222110 00 11111 1 2333
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 214 FWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 214 ~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
+..+++-...|+....+.++++.....+.+....+++.++|+++++|+.++.+++|+.+++.|+.+....+.
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 334677778888888899999999999999999999999999999999999999999999999988766543
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.56 E-value=0.00085 Score=48.86 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=48.1
Q ss_pred HHhhccch-hHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 229 NTLERVAP-LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 229 ~~~~~~~~-~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
.++|+.+. ..+++...+..+.+.+.|+++|||++|+.+++|+.++++|++..+..+
T Consensus 49 ~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 36677776 445788888999999999999999999999999999999999987643
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.54 E-value=0.00037 Score=51.45 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=47.8
Q ss_pred HHhhccch-hHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 229 NTLERVAP-LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 229 ~~~~~~~~-~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
.++|+.+. ..++++..+..+.+.+.|+++|||++|+.+++|+.+++.|++..+..+
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 35677766 445777788999999999999999999999999999999999987654
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.52 E-value=0.0042 Score=45.03 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHhhccch-hHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 229 NTLERVAP-LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 229 ~~~~~~~~-~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
.++|+.+. ..++++.-+..+.+.+.++++|||++|+.+++|+.+++.|++..+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 36677776 455889999999999999999999999999999999999998864
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.51 E-value=0.0012 Score=47.59 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=47.9
Q ss_pred HHhhccch-hHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHh
Q 022445 229 NTLERVAP-LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 229 ~~~~~~~~-~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
.++|+.+. ..++++.-+..+.+.+.|+++|||++|+.+++|+.+++.|++..+..
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 35677766 55689999999999999999999999999999999999999987643
No 79
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.49 E-value=0.0035 Score=55.05 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH-HHhcchhhhhcchhhhhhhhchhHHHHHH
Q 022445 135 NWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA-IIVEGPQLIKHGLSDAISKVGMVKFISDL 213 (297)
Q Consensus 135 ~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (297)
...|+++++++++|++...+-.|| .++.|-...-....+.+.++ .|.. .....+.. .+...+.+. ..+...
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~-~~~~~g~~~~~~f-----~~~~~~~~~-~~~~~~ 76 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLI-LPWLIAALLLPDF-----WAYYSSFSG-STLLPV 76 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHH-HHHHHHHHHhhhH-----HHHHHhcCH-HHHHHH
Confidence 357999999999999999999998 45544333311122222111 2211 11111111 111222222 223444
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHH-hHHhhhhhHHHhhhhHhhhCCcc---c----chhhhHHHHHHHHHHHHHHhhH
Q 022445 214 FWVGMFYHLYNQLATNTLERVAPLTH-AVGNVLKRVFVIGFSILAFGNKI---S----TQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 214 ~~~~i~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~v~~~~~~~~~~~e~~---s----~~~~~G~~li~~g~~~~~~~~~ 285 (297)
+..|++=..-|..++..+|+.+-... .+..-+.-+.+.+.+.+++||=. + ...++|.+++++|+.+.+++..
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44465555556666667777765443 45556677788888888888632 2 3478899999999999988544
Q ss_pred HH
Q 022445 286 QM 287 (297)
Q Consensus 286 ~~ 287 (297)
++
T Consensus 157 ~k 158 (345)
T PRK13499 157 LK 158 (345)
T ss_pred hc
Confidence 43
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.35 E-value=0.00055 Score=57.51 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 211 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
.....-+.++...|.+.+.++++.+|.++.+....+.+++.++++++++++++..||.+..+..+|+.+....+..
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 4444557778888889999999999999999999999999999999999999999999999999999988765443
No 81
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.29 E-value=0.0024 Score=45.11 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHH
Q 022445 63 VAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPV 120 (297)
Q Consensus 63 ~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~ 120 (297)
.-.++..+..+...+++++|.+.+..+ .....+.+.+.+.+++||++|..++.++.++
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 344677888899999999999997665 5689999999999999999999999998763
No 82
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0043 Score=51.20 Aligned_cols=73 Identities=29% Similarity=0.400 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 55 KLLKLLIPVAVCH-ALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
.....-+..+++. .....+...++...|..++.++.++.|.+.++.++++++|++|..||.++...+.+.+=.
T Consensus 207 ~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 207 SLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 3333344444443 346678999999999999999999999999999999999999999999999988887743
No 83
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.17 E-value=0.015 Score=44.32 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=84.4
Q ss_pred HHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHH
Q 022445 9 FNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPK-RAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTH 87 (297)
Q Consensus 9 ~~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 87 (297)
....|-.+-++...|+.-++..+..+.+.+..+....+++ ....++..| +....|++-.....+.......++++...
T Consensus 16 q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG~~~V~~~~~~vp~lG~~~~~ 94 (138)
T PF04657_consen 16 QAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLGVFFVLSNIILVPRLGAALTT 94 (138)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3446666666666699999999999988876655443332 222222223 34447888888888999999999999877
Q ss_pred HHH-hhHHHHHHHHHHH----HhCCcCChHHHHHHHHHHhhhhe
Q 022445 88 TIK-ALEPFFNAAASQF----ILGQQLPLTLWLSLAPVVIGVSM 126 (297)
Q Consensus 88 ~l~-~~~pi~~~i~~~~----~~~e~~s~~~~~~~~~~~~Gv~~ 126 (297)
.+. ..+-+...++..+ ..|+++++++..++.+.++|+.+
T Consensus 95 ~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 95 ILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 664 5567777777765 35789999999999999999864
No 84
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.72 E-value=0.015 Score=50.43 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHH
Q 022445 135 NWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 214 (297)
Q Consensus 135 ~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (297)
...|..+++.++++.+....++||-..+.+....-.-.. .. +....+.||..+.
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~---------------~~-----------~~l~~~~W~~G~~ 58 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSG---------------GR-----------SYLRRPLWWIGLL 58 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch---------------hh-----------HHHhhHHHHHHHH
Confidence 468999999999999999999999754422200000000 00 0111122333333
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 215 WVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 215 ~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
.. ..+...+ +.++...++...+..+.+..+++.+++..+++|+++...+.|+.+++.|..+..
T Consensus 59 ~~-~~g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 LM-VLGEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HH-hcchHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 22 2232333 334477788888888889999999999999999999999999999999987543
No 85
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.066 Score=41.00 Aligned_cols=137 Identities=7% Similarity=0.087 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHH
Q 022445 136 WTGFISAMISNISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 214 (297)
Q Consensus 136 ~~G~l~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (297)
....++++.++++-..+.-+.-++.+..+ |..........+++.+..+....+...... ..... .+| ..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a-----~~~~~---pwW--~~ 73 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLA-----AVASA---PWW--AW 73 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-----hccCC---chH--HH
Confidence 45678889999999999999999987766 666667777777777777666544332111 11111 112 12
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHhHHh-hhhhHHHhhhhHhhhC----CcccchhhhHHHHHHHHHHHHHH
Q 022445 215 WVGMFYHLYNQLATNTLERVAPLTHAVGN-VLKRVFVIGFSILAFG----NKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 215 ~~~i~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~v~~~~~~~~~~~----e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
..|+++..+-........|.++..+-..- .-.-+.+.+++.+=+. .+++...++|..++++|+++.+.
T Consensus 74 ~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 74 IGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred HccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 22344444444444456788887664433 3334455555544332 45899999999999999666543
No 86
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.54 E-value=7.9e-05 Score=61.57 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHH
Q 022445 136 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFW 215 (297)
Q Consensus 136 ~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (297)
..|.++.-++ .++....+..+|..++ ||.+......+.-.+...|..+..-.+-+.+. ..-.+ ++.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~-~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~------g~R~~------LiL 102 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLEN-DPMELASFRLLVRMLITYPCLIYYMQPVIGPE------GKRKW------LIL 102 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhcc-ChhHhhhhhhhhehhhhheEEEEEeeeeecCC------CcEEE------EEe
Confidence 4688887777 7777777788887655 77766666544444444454443322211110 00001 111
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 216 VGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 216 ~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
=|..++..-...|++.++.+-..+.+.....|++++++++.+++|+.|....+|..+.+.|+++..+.+
T Consensus 103 Rg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 103 RGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred ehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 122233222334446677777778888889999999999999999999999999999999999877654
No 87
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.47 E-value=0.046 Score=46.29 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHH
Q 022445 23 PYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQ 102 (297)
Q Consensus 23 p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~ 102 (297)
|+....=|..-..+...++.... +++..+++.+ .-...|+++..++.+...+.+..+++++-.+.++.++...+.+.
T Consensus 164 ~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~k~~~-~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI 240 (269)
T PF06800_consen 164 GWSAFLPQAIGMLIGAFIFNLFS--KKPFFEKKSW-KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGI 240 (269)
T ss_pred hhHhHHHHHHHHHHHHHHHhhcc--cccccccchH-HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhh
Confidence 55555444333333333333322 2223333444 44666999999999999999999999999999999999999999
Q ss_pred HHhCCcCChHHHHHHH
Q 022445 103 FILGQQLPLTLWLSLA 118 (297)
Q Consensus 103 ~~~~e~~s~~~~~~~~ 118 (297)
+++||+=+++++....
T Consensus 241 ~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 241 FILKEKKTKKEMIYTL 256 (269)
T ss_pred eEEEecCchhhHHHHH
Confidence 9999988988775443
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.31 E-value=0.043 Score=45.42 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhe
Q 022445 60 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 126 (297)
Q Consensus 60 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~ 126 (297)
.....+....+..+..+.+++.+.........+.++++.+++.++++|+++..++.|..+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344455667777899999999999999999999999999999999999999999999999988764
No 89
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.29 E-value=0.16 Score=44.27 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH-HHhcchhhhhcchhhhhhhhchhHHHHHHH
Q 022445 136 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA-IIVEGPQLIKHGLSDAISKVGMVKFISDLF 214 (297)
Q Consensus 136 ~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (297)
..|+++..+++++.+.+.+=.||. |+.+-.+.-..+.+.+-++ .|.. .....|+.. +...+.+...++...+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli-~P~~~a~l~ip~~~-----~i~~~~~~~~l~~~~l 78 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLI-VPWLWALLAIPDFF-----SIYSATPASTLFWTFL 78 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHH-HHHHHHHHhCCcHH-----HHHHhCChhHHHHHHH
Confidence 579999999999999999999987 6666656555555555443 3432 222333222 1222222222222211
Q ss_pred HH---HHHHHHHHHHHHHHhhccch-hHHhHHhhhhhHHHhhhhHhhhC-------CcccchhhhHHHHHHHHHHHHHHh
Q 022445 215 WV---GMFYHLYNQLATNTLERVAP-LTHAVGNVLKRVFVIGFSILAFG-------NKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 215 ~~---~i~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~v~~~~~~~~~~~-------e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
.. |+-+..+.. .+|+++- ...++..-+..+++.++-.++.| ++-....++|.+++++|+.+..++
T Consensus 79 ~G~lWGIGgltfGl----~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 79 FGVLWGIGGLTFGL----AMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHhcchhhHhH----HHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 11 222222222 3344432 23334333334444444333332 222346899999999999999887
Q ss_pred hHHHHHH
Q 022445 284 KAQMEEE 290 (297)
Q Consensus 284 ~~~~~~~ 290 (297)
..+|+++
T Consensus 155 G~~Ke~~ 161 (344)
T PF06379_consen 155 GSMKEKE 161 (344)
T ss_pred HHhhhhh
Confidence 6655444
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.25 E-value=0.016 Score=42.23 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 63 VAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 63 ~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
.=++...+...++..+...+.|.+..+ .++.=++|++.+++..+|..+++.+.|..+.++|+.+.
T Consensus 47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 344566778889999999999998877 58889999999998888899999999999999998764
No 91
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.11 E-value=0.4 Score=41.90 Aligned_cols=142 Identities=21% Similarity=0.196 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----cCCchhHHHHHHHHHHHHHHHHHHHhcch--hhhhcchhhhhhhhchhHHHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAMT----DMDSTNIYAYISIIALFVCIPPAIIVEGP--QLIKHGLSDAISKVGMVKFIS 211 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 211 (297)
=.+..+...+-++......|...+ ++.|.+..+..-+.-.+.++......+.. +-......+.+.... .+ ..
T Consensus 16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~-~l 93 (345)
T KOG2234|consen 16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAP-RE-TL 93 (345)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhCh-HH-HH
Confidence 344455556666666666666543 24566777777777777776665554322 100000111111111 01 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 212 DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
-+..-+.++...|-+.+...++.+|.++.+...++...+.+++.++++++++..||....+..+|+.+..
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 2233355666777788889999999999999999999999999999999999999999999999999887
No 92
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.66 E-value=0.064 Score=37.79 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=26.1
Q ss_pred HHHhhccchhHH-hHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHH
Q 022445 228 TNTLERVAPLTH-AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIA 273 (297)
Q Consensus 228 ~~~~~~~~~~~~-s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li 273 (297)
..++|+.+.... .+...+..+...+.|.++|||++|..+++|+.++
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 447788776444 7778889999999999999999999999998875
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.45 E-value=0.015 Score=48.78 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 217 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (297)
|++.+++|+++++...+=.||. +.-|+.-.+.+......+.........+.+.... ..++. |
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p------------~amlg-----G 62 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILGFPPFYP------------WAMLG-----G 62 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcCCCccee------------HHHhh-----h
Confidence 5678899999999999999887 4557766666655444444333333333222110 11111 2
Q ss_pred HHHHHHHHHHHHHhhccch-hHHhHHhhhhhHHHhhhhHh-hhCCc-----ccchhhhHHHHHHHHHHHHHHh
Q 022445 218 MFYHLYNQLATNTLERVAP-LTHAVGNVLKRVFVIGFSIL-AFGNK-----ISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 218 i~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~v~~~~~~~~-~~~e~-----~s~~~~~G~~li~~g~~~~~~~ 283 (297)
.+-..-|....-.+|+++- .-..+++..+-+.+...|-+ +||++ -....++|.+++++|..++..-
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 2222223333335555554 33456677677777777755 56543 3567899999999999988653
No 94
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.5 Score=36.28 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=77.1
Q ss_pred HHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHH
Q 022445 10 NILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPI--DSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTH 87 (297)
Q Consensus 10 ~~~~K~~~~~~~~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 87 (297)
+-.|-++-+.-..|..-++.-+..+..++......+ ++.+.. .++.-++....|++..............++++..+
T Consensus 21 ~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~ 99 (150)
T COG3238 21 AAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK-QGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTI 99 (150)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHH
Confidence 345666666666799999999999887776654442 222211 12212233444566555555666777778877765
Q ss_pred HH-HhhHHHHHHHHHHHHh----CCcCChHHHHHHHHHHhhhhee
Q 022445 88 TI-KALEPFFNAAASQFIL----GQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 88 ~l-~~~~pi~~~i~~~~~~----~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
.+ .+.+.+...++..+=. +++++..++.++++.++|+.+.
T Consensus 100 ~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 100 ALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 54 5667777777776554 4799999999999999995554
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.04 E-value=0.082 Score=45.98 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=89.9
Q ss_pred hhhhHHHHHHhHHHhhc--CC-chHHHHHHHHHHHHHHHH-HHHhhCCCCCC------CCCHHHHHHHHHHHHHHHHHHH
Q 022445 3 YFLNVIFNILNKRIYNY--FP-YPYFVSVIHLLVGVVYCL-VSWAVGLPKRA------PIDSKLLKLLIPVAVCHALGHV 72 (297)
Q Consensus 3 ~~~s~~~~~~~K~~~~~--~~-~p~~~~~~~~~~~~l~l~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 72 (297)
.+..+.-++..|.++++ .+ .+..+...+--++...++ |......+... +.+.. .......+++....+.
T Consensus 172 ~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~f~~Nl 250 (316)
T KOG1441|consen 172 NLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNSVLAFLLNL 250 (316)
T ss_pred HHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHHHHHHHHHH
Confidence 34555667777888752 11 356666666666666666 65433222221 22223 2333444577777788
Q ss_pred hhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeec
Q 022445 73 TSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 129 (297)
Q Consensus 73 ~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~ 129 (297)
..+..+..+++=+.++.....=+.+...++++++|+.++.+.+|..+.++|+.....
T Consensus 251 s~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 251 SAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999899999999999999999999999999999998653
No 96
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.44 E-value=0.065 Score=46.93 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 212 DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
..+..+.+=+..++....+++.++....+++......++..++..+-+|++|+...++.++.+.|+++.+..+.
T Consensus 161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence 34444666667788888899999999999999999999999999999999999999999999999998876544
No 97
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=92.81 E-value=0.074 Score=42.35 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=57.0
Q ss_pred HHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHH
Q 022445 223 YNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 287 (297)
Q Consensus 223 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 287 (297)
.++.+..++++++|...+-....+..+..++++..+||++....++..++.+.|+++.+|.+...
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 35666778899999999999999999999999999999999999999999999998887665543
No 98
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.58 E-value=0.99 Score=32.92 Aligned_cols=50 Identities=28% Similarity=0.220 Sum_probs=38.0
Q ss_pred HhhccchhHHh-HHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHH
Q 022445 230 TLERVAPLTHA-VGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 279 (297)
Q Consensus 230 ~~~~~~~~~~s-~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~ 279 (297)
.+++.+-.... +.+.+.-+++.+.++++.+|..+...++|+++++.|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 34555443332 446778889999998888888899999999999999864
No 99
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.30 E-value=9.7 Score=33.48 Aligned_cols=228 Identities=15% Similarity=0.175 Sum_probs=129.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhC-------CcCChHHHHHHHHHHhh
Q 022445 52 IDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILG-------QQLPLTLWLSLAPVVIG 123 (297)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~-------e~~s~~~~~~~~~~~~G 123 (297)
.+.+........|++...+...+-.+.+|++.+..+-+ ..++-.+-.++-.++.+ ++-.....+++++.++|
T Consensus 68 ~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiG 147 (344)
T PF06379_consen 68 TPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIG 147 (344)
T ss_pred CChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHH
Confidence 44556677788899999999999999999999885543 45555555555555543 23345788999999999
Q ss_pred hheeecc----c-------ccch-HHHHHHHHHHHHHHHHHHHHHHHhh--------ccCCchh----HHHHHHHHHHHH
Q 022445 124 VSMASLT----E-------LSFN-WTGFISAMISNISFTYRSIYSKKAM--------TDMDSTN----IYAYISIIALFV 179 (297)
Q Consensus 124 v~~~~~~----~-------~~~~-~~G~l~~l~a~~~~a~~~v~~~~~~--------~~~~~~~----~~~~~~~~~~~~ 179 (297)
+++.... | .+++ ..|.+.++.|.+..|..+.-.+.-. ...+|.. .......-+.+.
T Consensus 148 Iai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~t 227 (344)
T PF06379_consen 148 IAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFIT 227 (344)
T ss_pred HHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHH
Confidence 9987541 1 1222 3799999999999998887666432 1123331 112222334444
Q ss_pred HHHHHHHhcc--hhh-hhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHhHHhhhhhHHHhh
Q 022445 180 CIPPAIIVEG--PQL-IKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERV----APLTHAVGNVLKRVFVIG 252 (297)
Q Consensus 180 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~v~~~~ 252 (297)
.+...+.... .+. ...+.+.. .+....+...+.+ .|+.=+...+.+-+.-.+. +.....+.+.+..+++-+
T Consensus 228 N~~yc~~~l~~~k~~s~~~d~~~~-~~~~~~N~~~~aL-aG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snv 305 (344)
T PF06379_consen 228 NLIYCLILLAKNKNWSWKGDYSVA-KPPLLKNYLFCAL-AGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNV 305 (344)
T ss_pred HHHHHHHHHhhcCCCccccccccc-cchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHH
Confidence 5555544311 110 00000000 0111122222221 2332222222221222333 355667788888888888
Q ss_pred hhHhhhCC------cccchhhhHHHHHHHHHHHHHH
Q 022445 253 FSILAFGN------KISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 253 ~~~~~~~e------~~s~~~~~G~~li~~g~~~~~~ 282 (297)
++.. ++| +.-...++|+.+++.++.+..+
T Consensus 306 wGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 306 WGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 8874 444 3334568899888888877544
No 100
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=8.3 Score=33.42 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC-chh--HHHHHHHHHHHHHHHHHHHh--cchhhhhcchhhhhhhhchhHHHHH
Q 022445 138 GFISAMISNISFTYRSIYSKKAMTDMD-STN--IYAYISIIALFVCIPPAIIV--EGPQLIKHGLSDAISKVGMVKFISD 212 (297)
Q Consensus 138 G~l~~l~a~~~~a~~~v~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (297)
....++.-+++...-.+..|-...+++ |.. ...+|++.+.+.....-... +.+...... ..-|..
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~----------~kk~~P 82 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT----------AKKWFP 82 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH----------HHHHcc
Confidence 344555556666666777777666543 333 44588888877765554332 111111100 011111
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 213 LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 213 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
..++.++..+.....+++++-..+.++....++...+...+++|.+++...+.....+.+|......
T Consensus 83 ---~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 83 ---VSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred ---HHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 1222333334445577999999999999999999999999999999999999999999999876543
No 101
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.98 E-value=0.35 Score=39.75 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheee
Q 022445 55 KLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 128 (297)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~ 128 (297)
..+..+...++...+++.+.+.-..+-++=.-+++..+--+|+.+.+.++++..++.+||+|.++.+.|...-.
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 34567777888888888888888888777777778888899999999999999999999999999998887543
No 102
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=90.92 E-value=7.9 Score=31.85 Aligned_cols=104 Identities=11% Similarity=0.018 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hCC--CC--CCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHH
Q 022445 24 YFVSVIHLLVGVVYCLVSWA-VGL--PK--RAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNA 98 (297)
Q Consensus 24 ~~~~~~~~~~~~l~l~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ 98 (297)
....++.=+.+..+++.+-. ... ++ ...++.+....+++.|++.+.-..+.-|.++-++..+++++..+.-...+
T Consensus 186 ~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~a 265 (309)
T COG5070 186 FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIA 265 (309)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHH
Confidence 44556666666666655422 221 11 12345566677888888888888899999999999999999999999999
Q ss_pred HHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 99 AASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 99 i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
+.+.++++|..+...++++.++....++.
T Consensus 266 laGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 266 LAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred HhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888776655544
No 103
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.70 E-value=3.1 Score=35.78 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhe
Q 022445 52 IDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 126 (297)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~ 126 (297)
..++.++.++..+.+...++.+-+.-++.-++=+.+++..+--++..+++.+.++.+++..||.++.+.+.|+..
T Consensus 236 ~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 236 EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 455788999999999999999999999988888888888889999999999999999999999999988888764
No 104
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=89.86 E-value=0.17 Score=41.92 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHH
Q 022445 51 PIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAP 119 (297)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~ 119 (297)
+.+|..++ -...|+....++.+...|-+..++++.-.+.++..+...+-+.+++|||=+++|+..+..
T Consensus 204 ~~~K~t~~-nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 204 RFNKYTWL-NIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII 271 (288)
T ss_pred chHHHHHH-HHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence 34444444 455699999999999999999999999999999999999999999999999999865543
No 105
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.95 E-value=0.12 Score=44.51 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=77.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHH
Q 022445 133 SFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISD 212 (297)
Q Consensus 133 ~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (297)
+++..|..+++.+.++.+....+.||..++.... +.+..+.+... ...+ +|+.
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~----------------------~~ra~~gg~~y----l~~~-~Ww~ 69 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGAS----------------------GLRAGEGGYGY----LKEP-LWWA 69 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhhh----------------------cccccCCCcch----hhhH-HHHH
Confidence 3456888899999999998888888876552210 01111111111 1112 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHH
Q 022445 213 LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 280 (297)
Q Consensus 213 ~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~ 280 (297)
....-..+-..|+..| ...++.-.+.++.+..+.+.+++..+++|+++....+|++++++|....
T Consensus 70 G~ltm~vGei~NFaAY---aFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~i 134 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAY---AFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTI 134 (335)
T ss_pred HHHHHHHHhHhhHHHH---hhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEE
Confidence 2222333444444444 5667777778888999999999999999999999999999999998653
No 106
>PRK02237 hypothetical protein; Provisional
Probab=80.50 E-value=3.8 Score=29.39 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=34.3
Q ss_pred HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc
Q 022445 90 KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 130 (297)
Q Consensus 90 ~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~ 130 (297)
.....+...+..+.+.|+||++.++.+..++++|+.++.+.
T Consensus 66 GGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 66 GGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 34456666788899999999999999999999999887543
No 107
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.37 E-value=4.1 Score=29.15 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=35.2
Q ss_pred HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc
Q 022445 90 KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 130 (297)
Q Consensus 90 ~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~ 130 (297)
.....+...+..+.+.|+||++.++.+..++++|+.++.+.
T Consensus 64 GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 64 GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 34556777888899999999999999999999999988654
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=78.24 E-value=5.8 Score=33.82 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=47.2
Q ss_pred HHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHH
Q 022445 227 ATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 227 ~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 282 (297)
.+..+..+++....+..-...+++-++|.-+++.+++..+|.|+..+.+|+.....
T Consensus 103 m~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 103 MYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 33455667888888888888899999999999999999999999999999876543
No 109
>PRK02237 hypothetical protein; Provisional
Probab=74.75 E-value=5.7 Score=28.51 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=38.0
Q ss_pred HhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHh
Q 022445 239 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 239 ~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
++...-...+.+.++++.+-|++++...++|..++++|+.+.-+.
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 355666778888999999999999999999999999999765443
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=73.27 E-value=5.2 Score=28.62 Aligned_cols=45 Identities=22% Similarity=0.148 Sum_probs=38.3
Q ss_pred HhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHh
Q 022445 239 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 239 ~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
++...-...+.+.++++.+-|++|+...++|..+++.|+.+.-+.
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 356666778899999999999999999999999999998875543
No 111
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=73.19 E-value=7.2 Score=27.74 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeeccc
Q 022445 91 ALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 131 (297)
Q Consensus 91 ~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~ 131 (297)
........+..++..|+|+++.++.+..++++|+.++....
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 44556667778888999999999999999999998887643
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=63.27 E-value=8.9 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.8
Q ss_pred hhhhHhhhCCcccchhhhHHHHHHHHHH
Q 022445 251 IGFSILAFGNKISTQTGIGTVIAIAGVA 278 (297)
Q Consensus 251 ~~~~~~~~~e~~s~~~~~G~~li~~g~~ 278 (297)
..++.++++|++++.+..|..+++.++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 3467889999999999999999987764
No 113
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=62.50 E-value=1.4e+02 Score=28.24 Aligned_cols=26 Identities=19% Similarity=-0.032 Sum_probs=13.4
Q ss_pred hccchhHHhHHhhhhhHHHhhhhHhh
Q 022445 232 ERVAPLTHAVGNVLKRVFVIGFSILA 257 (297)
Q Consensus 232 ~~~~~~~~s~~~~~~~v~~~~~~~~~ 257 (297)
.|..+....+.....|+-+.+.|.+.
T Consensus 342 GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 342 GRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444545566566666554
No 114
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=58.55 E-value=81 Score=27.04 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecccc
Q 022445 59 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL 132 (297)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~~ 132 (297)
..+..++....++.+-..-++.-++.++..+...---.+.+++++++.|..+-...-+..+.+.|+.+-..++.
T Consensus 262 y~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 262 YAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 33444444444444333334445666777777777888999999999999999999999999999998766553
No 115
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=58.17 E-value=16 Score=31.65 Aligned_cols=138 Identities=11% Similarity=-0.001 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH-HHhcchh---hhhcchhhhhhhhchhHHHHHHHHHHH
Q 022445 143 MISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA-IIVEGPQ---LIKHGLSDAISKVGMVKFISDLFWVGM 218 (297)
Q Consensus 143 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (297)
+++.+||+.....+|-..++-...+..++=+.++.++...+. +-.+... ....++.+.+.+.+++.+ ......|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv-~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSV-LFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHH-HHHHHhhH
Confidence 345677777776666654432222334444444433322222 2211110 111223333444444443 33333466
Q ss_pred HHHHHHHHHHHHhhccchhHHhH-HhhhhhHHHhhhhHhhhCCccc--chhhhHHHHHHHHHHHHHH
Q 022445 219 FYHLYNQLATNTLERVAPLTHAV-GNVLKRVFVIGFSILAFGNKIS--TQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~v~~~~~~~~~~~e~~s--~~~~~G~~li~~g~~~~~~ 282 (297)
+..+.|++...++...+-..+-. ...+.-+.++++-++ .+++.+ ...+-|..++++++++-..
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 66666655554444443322211 111222233333342 344443 3566788888888876443
No 116
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=55.93 E-value=16 Score=26.13 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 64 AVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 64 ~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
=.+.-++..+++.-++..|.+.+.-+ .++.-.++++.+.....|...++.+.|..+.++|+.+.
T Consensus 59 FllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 59 FLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 44455677788888999998886655 56678889999987777788899999999999998653
No 117
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=51.60 E-value=1.1e+02 Score=28.53 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=33.5
Q ss_pred ccchhHHhHHhhhhhHHHhhhhHhhh------------CCcccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 233 RVAPLTHAVGNVLKRVFVIGFSILAF------------GNKISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 233 ~~~~~~~s~~~~~~~v~~~~~~~~~~------------~e~~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
+.++..-...+....+.-++.+-..+ +-+++.....|+-+-+.+..+.+.-.++
T Consensus 445 ~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~~~~~~~~~~~~~~~~g~~sipv~F~~~~ivSllt~~ 510 (529)
T COG4147 445 TAGAIAGMLLGLIVTLVLIILSPTIWVVILGHPGFGWAGFPYEGPGLFSIPVGFLGAWIVSLLTKP 510 (529)
T ss_pred HHhHHHHHHHHHHHHHHHHHhCccccccccCccccccccCCCCCcchhhhhHHHHHhHheeccCCC
Confidence 34455555555555555555554333 3356777888888888888877765443
No 118
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=50.13 E-value=21 Score=24.55 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhHHH
Q 022445 261 KISTQTGIGTVIAIAGVAAYSYIKAQM 287 (297)
Q Consensus 261 ~~s~~~~~G~~li~~g~~~~~~~~~~~ 287 (297)
..++..++|..+++.|..+|..+..++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 467889999999999999987654443
No 119
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=49.55 E-value=96 Score=22.29 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=36.7
Q ss_pred hhhhhcccchhhHHHHHH-hhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 73 TSNVSFAAVAVSFTHTIK-ALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 73 ~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
.+=+|.+..+.+.--+++ ..+...-+.++.+++||++++....|.+..++++.++
T Consensus 51 ANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 51 ANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred chhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 444455544444443443 2233444567788999999999999999998887654
No 120
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=48.99 E-value=23 Score=21.44 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 022445 267 GIGTVIAIAGVAAYSYIKAQMEEEK 291 (297)
Q Consensus 267 ~~G~~li~~g~~~~~~~~~~~~~~~ 291 (297)
.+-..++++|++.+.+.++++++-+
T Consensus 16 l~~~~~~Figiv~wa~~p~~k~~f~ 40 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRKKAFD 40 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhHH
Confidence 3345788899999998776655443
No 121
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=44.79 E-value=2.6e+02 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 022445 265 QTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 265 ~~~~G~~li~~g~~~~~~~~~ 285 (297)
....|.++...|..+|.+.++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999888776443
No 122
>PRK10666 ammonium transporter; Provisional
Probab=43.16 E-value=2.7e+02 Score=25.67 Aligned_cols=77 Identities=12% Similarity=-0.021 Sum_probs=34.9
Q ss_pred HhCCcCChHHHHHHHHHHhhhheeecc-cccchHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCchhHHHHHHHHHHHH
Q 022445 104 ILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISFTYRSIYSKKAM---TDMDSTNIYAYISIIALFV 179 (297)
Q Consensus 104 ~~~e~~s~~~~~~~~~~~~Gv~~~~~~-~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~ 179 (297)
..++|++......-++ .|.+-+... +.-..+...+.+.++++..-......|+.. +..|...+=....+.+.+.
T Consensus 273 ~~~gk~~~~~~~nG~L--aGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~ 350 (428)
T PRK10666 273 ALRGKPSLLGACSGAI--AGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCIL 350 (428)
T ss_pred HHhCCCCHHHHHHHHh--hhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCccHhhhHhHHHHHHH
Confidence 3456777665544332 444433322 222234556666666665544333344322 2233334444444444444
Q ss_pred HHH
Q 022445 180 CIP 182 (297)
Q Consensus 180 ~~~ 182 (297)
...
T Consensus 351 ~gl 353 (428)
T PRK10666 351 TGI 353 (428)
T ss_pred HHH
Confidence 333
No 123
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=42.92 E-value=1.6e+02 Score=23.01 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=39.2
Q ss_pred HHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHhhccC------CchhHHHHHHHHHHHHHHH
Q 022445 120 VVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDM------DSTNIYAYISIIALFVCIP 182 (297)
Q Consensus 120 ~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 182 (297)
.+.|+.+....+.+.-......++.++..+++..++.....++. .|..-..+..+.++++.+.
T Consensus 115 aVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSla 183 (193)
T COG4657 115 AVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLA 183 (193)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHH
Confidence 45677777655554445677778888888888777776665442 2445555555555555443
No 124
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=41.70 E-value=8.6 Score=32.69 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHhhHHHHHHHHHH-HHhCCc-CChHHHHHHHHHHhhhheeeccc--ccchHHHHHHHHHH
Q 022445 78 FAAVAVSFTHTIKALEPFFNAAASQ-FILGQQ-LPLTLWLSLAPVVIGVSMASLTE--LSFNWTGFISAMIS 145 (297)
Q Consensus 78 l~~~~~~~~~~l~~~~pi~~~i~~~-~~~~e~-~s~~~~~~~~~~~~Gv~~~~~~~--~~~~~~G~l~~l~a 145 (297)
++-.+-+-.+++.+...+.+.++-. +++|+| +-+.-.+.++++++-..+...-. .+.-+.|+++.+++
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~ 115 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLC 115 (381)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3344444555666655444443333 344554 45666666666666555544322 23345676554433
No 125
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=41.59 E-value=6.5 Score=33.08 Aligned_cols=102 Identities=12% Similarity=0.046 Sum_probs=65.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhh
Q 022445 165 STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNV 244 (297)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~ 244 (297)
|....+..++.-.++..|+..+.... . ... |-..+..+..-.-.|+....+.++++-.......-
T Consensus 48 Pt~QtFl~Y~LLalVY~~~~~fR~~~-~---------~~~-----~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDc 112 (336)
T KOG2766|consen 48 PTSQTFLNYVLLALVYGPIMLFRRKY-I---------KAK-----WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDC 112 (336)
T ss_pred ccHHHHHHHHHHHHHHhhHHHhhhHH-H---------HHH-----HHHhhheeEEeecccEEEeeehhhcchHHHHHHHH
Confidence 44556666666666666666543311 0 111 11122222222223444445567777777788887
Q ss_pred hhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHH
Q 022445 245 LKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 281 (297)
Q Consensus 245 ~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~ 281 (297)
-..+...+++|++++.+..+.++.|.++++.|+.+..
T Consensus 113 waip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 113 WAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVV 149 (336)
T ss_pred hhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEE
Confidence 7788888999999999999999999999999987653
No 126
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=40.98 E-value=14 Score=31.53 Aligned_cols=49 Identities=6% Similarity=0.057 Sum_probs=40.9
Q ss_pred HHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHHHH
Q 022445 241 VGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE 289 (297)
Q Consensus 241 ~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~ 289 (297)
++..-.++.++..++++.|.+.|..|+...+++.+|+++.+..+.++.+
T Consensus 96 IfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred EEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 4555667888999999999999999999999999999998776554433
No 127
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=40.81 E-value=77 Score=18.68 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=4.9
Q ss_pred HHHHHHHHh
Q 022445 275 AGVAAYSYI 283 (297)
Q Consensus 275 ~g~~~~~~~ 283 (297)
+|..+|..-
T Consensus 21 iGl~IyQki 29 (49)
T PF11044_consen 21 IGLSIYQKI 29 (49)
T ss_pred HHHHHHHHH
Confidence 455666543
No 128
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=40.17 E-value=4e+02 Score=26.74 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=34.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeec
Q 022445 84 SFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 129 (297)
Q Consensus 84 ~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~ 129 (297)
+-+.++..+.|+-.+.++.+...+|.+...+.+.+..++|.+.+..
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~~~ 56 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISIQP 56 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhCc
Confidence 3456778899999999999988888766667777777778775543
No 129
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.21 E-value=60 Score=27.86 Aligned_cols=105 Identities=7% Similarity=-0.030 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCC--CCC---CCC-CHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHH
Q 022445 23 PYFVSVIHLLVGVVYCLVSWAVGL--PKR---API-DSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFF 96 (297)
Q Consensus 23 p~~~~~~~~~~~~l~l~~~~~~~~--~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~ 96 (297)
-+-++++.-+.+.++.++...... .+. ++. ..+.|..+...|++.+....-..+-++-+++=+..+-.......
T Consensus 215 iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~a 294 (347)
T KOG1442|consen 215 IWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAA 294 (347)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHH
Confidence 367788888888777776544332 111 122 34556666667777665555666667777766665555555666
Q ss_pred HHHHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 97 NAAASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 97 ~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
=.+++..+++|.-+...|.+-++.+.|....
T Consensus 295 QTvlAv~~y~E~ks~lwwtsn~~vLvgs~~Y 325 (347)
T KOG1442|consen 295 QTVLAVAYYSETKSGLWWTSNIVVLVGSLAY 325 (347)
T ss_pred HHHHHHHHHHHHhhhheeeeeEEEEehhHHH
Confidence 6778889999999999999888777776654
No 130
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=38.91 E-value=2.4e+02 Score=23.89 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHH-HHH
Q 022445 22 YPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFN-AAA 100 (297)
Q Consensus 22 ~p~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~-~i~ 100 (297)
.+++..+.......+.-+....... .++ ........|.+.+.++.+..-.++.++.+....+=++.-+.+ -..
T Consensus 26 Dg~~fQw~~~~~i~~~g~~v~~~~~--~p~----f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~ 99 (254)
T PF07857_consen 26 DGFFFQWVMCSGIFLVGLVVNLILG--FPP----FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWAS 99 (254)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcC--CCc----ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444333332221 111 234566778999999999999999999999998876644443 333
Q ss_pred HHH-Hh---CC--cCChHHHHHHHHHHhhhheeecc--------------------------c-------c--------c
Q 022445 101 SQF-IL---GQ--QLPLTLWLSLAPVVIGVSMASLT--------------------------E-------L--------S 133 (297)
Q Consensus 101 ~~~-~~---~e--~~s~~~~~~~~~~~~Gv~~~~~~--------------------------~-------~--------~ 133 (297)
+.+ ++ +| +-....++|+++.++|..+...- | + +
T Consensus 100 grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~ 179 (254)
T PF07857_consen 100 GRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRK 179 (254)
T ss_pred hhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccccccccccccccccccccccccccccc
Confidence 332 23 22 34677889999999998875430 0 0 0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022445 134 FNWTGFISAMISNISFTYRSIYSKKAMTD 162 (297)
Q Consensus 134 ~~~~G~l~~l~a~~~~a~~~v~~~~~~~~ 162 (297)
....|..+++++++.|+...+=.+...++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 13679999999999999877666665544
No 131
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=38.80 E-value=1.4e+02 Score=22.93 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=13.1
Q ss_pred chhHHhHHhhhhhHHHhhhhHhh
Q 022445 235 APLTHAVGNVLKRVFVIGFSILA 257 (297)
Q Consensus 235 ~~~~~s~~~~~~~v~~~~~~~~~ 257 (297)
+....+.+.|+.|.++.+++.+.
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666655544
No 132
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=38.47 E-value=48 Score=19.91 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 022445 267 GIGTVIAIAGVAAYSYIKAQMEE 289 (297)
Q Consensus 267 ~~G~~li~~g~~~~~~~~~~~~~ 289 (297)
.+-..++++|++.+.+.++++++
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHHHHHHHcccchhh
Confidence 34455667788888876665443
No 133
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=37.63 E-value=1.4e+02 Score=20.87 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=31.7
Q ss_pred HhhccchhHHhHHhhhhhHHHhhhhHhh---hCCc-ccchhhhHHHHHHHHHHHHHHhhHH
Q 022445 230 TLERVAPLTHAVGNVLKRVFVIGFSILA---FGNK-ISTQTGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 230 ~~~~~~~~~~s~~~~~~~v~~~~~~~~~---~~e~-~s~~~~~G~~li~~g~~~~~~~~~~ 286 (297)
.+|+++-...-....+.-+.+++++.+. -++. +-...|.|.+.=+++.-++....+|
T Consensus 24 ~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r 84 (93)
T PF06946_consen 24 AIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNR 84 (93)
T ss_pred HHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhh
Confidence 5566664444455555566666665543 2332 3334577876666666666554443
No 134
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=35.76 E-value=84 Score=23.50 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=14.0
Q ss_pred chhHHhHHhhhhhHHHhhhhHhh
Q 022445 235 APLTHAVGNVLKRVFVIGFSILA 257 (297)
Q Consensus 235 ~~~~~s~~~~~~~v~~~~~~~~~ 257 (297)
+....+++.+.-|++..+++.++
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666777777666544
No 135
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=34.19 E-value=3.7e+02 Score=24.60 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc-cccchHHHHHHHHHHHHHHHHHHHHHHH
Q 022445 94 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISFTYRSIYSKK 158 (297)
Q Consensus 94 pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~-~~~~~~~G~l~~l~a~~~~a~~~v~~~~ 158 (297)
-+...+.++.. ++|++......- .++|.+-+... +.-..+...+.+.++++.+-....+.||
T Consensus 254 ~l~~~~~~~~~-~gk~~~~~~~nG--~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~ 316 (404)
T TIGR03644 254 AIAALLLTKLL-FGKADLTMVLNG--ALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDK 316 (404)
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHH--HHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555543 456776664432 23444433322 2223445556666655555444444455
No 136
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=33.29 E-value=27 Score=24.95 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=35.7
Q ss_pred hHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHh
Q 022445 240 AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 283 (297)
Q Consensus 240 s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 283 (297)
+...-...+.+..+.++.=|.+++...++|..+.++|..+....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 44555667788888898889999999999999999997665443
No 137
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=29.97 E-value=81 Score=23.42 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=14.7
Q ss_pred CCcccchhhhHHHHHHHHHHHH
Q 022445 259 GNKISTQTGIGTVIAIAGVAAY 280 (297)
Q Consensus 259 ~e~~s~~~~~G~~li~~g~~~~ 280 (297)
+++.+..++.|.++.-.|.++.
T Consensus 74 n~~~si~~~~G~vlLs~GLmlL 95 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLMLL 95 (129)
T ss_pred cCCcchhhhehHHHHHHHHHHH
Confidence 5666666777777777776554
No 138
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=28.56 E-value=1.5e+02 Score=18.37 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022445 112 TLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMT 161 (297)
Q Consensus 112 ~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~ 161 (297)
....|.++.++|+++...+.. |.+..+++-...|.+....|+..+
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp-----G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP-----GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356788889999998877653 666666777777777777777653
No 139
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=28.02 E-value=4.2e+02 Score=23.32 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhHHHHHHhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhhee
Q 022445 59 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 127 (297)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~ 127 (297)
.+...|...++.....+.-+..++.=+.++..-..-+.+.+++..+.+++++-..|.|..+...|+..-
T Consensus 245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 334444444444455566666677666666666667788899999999999999999999999999876
No 140
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=27.89 E-value=4.6e+02 Score=23.78 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhcc--cchhh-----HHHHHHhhH-HHHHHHHHHHHhCCcCChHHHHHHHHHHhh
Q 022445 52 IDSKLLKLLIPVAVCHALGHVTSNVSFA--AVAVS-----FTHTIKALE-PFFNAAASQFILGQQLPLTLWLSLAPVVIG 123 (297)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~al~--~~~~~-----~~~~l~~~~-pi~~~i~~~~~~~e~~s~~~~~~~~~~~~G 123 (297)
.+.+.........++.-.+....|-+-. ..+.+ ..+.+..+. -+...+.++ +.++|.+......-. ++|
T Consensus 185 ~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~-~~~gk~~~~~~~nG~--laG 261 (399)
T PF00909_consen 185 IPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISY-LLSGKWSMVGICNGA--LAG 261 (399)
T ss_dssp --HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHCSS--HHHHHHHH--HHH
T ss_pred CCCCcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhh-ccccccchhhhhhhh--hhh
Confidence 3444444444544444455554553322 12222 222232222 333334443 444566655544332 333
Q ss_pred hheeecccc-cchHHHHHHHHHHHHH-HHHHHHHHHHhhccCCchhHHHHHHHHH
Q 022445 124 VSMASLTEL-SFNWTGFISAMISNIS-FTYRSIYSKKAMTDMDSTNIYAYISIIA 176 (297)
Q Consensus 124 v~~~~~~~~-~~~~~G~l~~l~a~~~-~a~~~v~~~~~~~~~~~~~~~~~~~~~~ 176 (297)
.+-+..... -..+...+.+++++.. +-....+.||. +=.|+..........+
T Consensus 262 lVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~-~iDD~~~~~~vHg~~G 315 (399)
T PF00909_consen 262 LVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRL-KIDDPVGAFAVHGVGG 315 (399)
T ss_dssp HHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHH-TS-HTTGHHHHCHHHH
T ss_pred hhheecccCCCcHHHHHHhhhhHhhhhhhheeccccee-EeccccceEeeeeccH
Confidence 333332222 2234555666666433 33333355554 2223444443333333
No 141
>COG1971 Predicted membrane protein [Function unknown]
Probab=26.40 E-value=1.2e+02 Score=24.46 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=25.1
Q ss_pred hHHhHHhhhhhHHHhhhhHhhhCCcccchhhhH-HHHHHHHHHH
Q 022445 237 LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIG-TVIAIAGVAA 279 (297)
Q Consensus 237 ~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G-~~li~~g~~~ 279 (297)
...+....+.|..+...+.++-+-.-.+.+|+| ..+.+.|.-.
T Consensus 41 ~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~m 84 (190)
T COG1971 41 LIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKM 84 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777766433345556555 4455666644
No 142
>PRK10655 potE putrescine transporter; Provisional
Probab=25.14 E-value=5.2e+02 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHH
Q 022445 265 QTGIGTVIAIAGVAAYSYIKAQM 287 (297)
Q Consensus 265 ~~~~G~~li~~g~~~~~~~~~~~ 287 (297)
....|......|..+|....+|.
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (438)
T PRK10655 409 AMLYGSIVTFLGWTLYGLISPRF 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44678888999998887644443
No 143
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=24.79 E-value=3e+02 Score=21.11 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=33.2
Q ss_pred HhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhH
Q 022445 230 TLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 285 (297)
Q Consensus 230 ~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~ 285 (297)
.+++.+..+.++... .-...+++.+--..++.++.|..++..=....-.++.
T Consensus 68 lm~~kgi~rm~lG~~----vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEp 119 (144)
T PF01350_consen 68 LMRRKGIGRMSLGML----VMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEP 119 (144)
T ss_pred hhcCCCcchhhHHHH----HHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCC
Confidence 446666666654442 3334455666566789999999998876666554433
No 144
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=24.50 E-value=6.1e+02 Score=24.04 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=46.1
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHH--hCCcCChHHHHHHHHHHhhhheeecccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 022445 81 VAVSFTHTIKALEPFFNAAASQFI--LGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKK 158 (297)
Q Consensus 81 ~~~~~~~~l~~~~pi~~~i~~~~~--~~e~~s~~~~~~~~~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~~a~~~v~~~~ 158 (297)
.++..+..+.++.-+-..+.+.+. ++++.+..++........|+......-.+..+......+++++++.......+-
T Consensus 251 ~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t 330 (524)
T PF05977_consen 251 GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNT 330 (524)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777766666555555543 466777777766666666655443322222233444555666677766555544
Q ss_pred hhcc
Q 022445 159 AMTD 162 (297)
Q Consensus 159 ~~~~ 162 (297)
..++
T Consensus 331 ~~Q~ 334 (524)
T PF05977_consen 331 LVQL 334 (524)
T ss_pred HHHH
Confidence 4433
No 145
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=24.46 E-value=5.5e+02 Score=23.47 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHhhHH
Q 022445 266 TGIGTVIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 266 ~~~G~~li~~g~~~~~~~~~~ 286 (297)
...+...+..|..+|-..++|
T Consensus 410 ~~~~~~~~~~~~~~y~~~~~~ 430 (445)
T PRK10644 410 VMWSFVTLMVITAFYALNYNR 430 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555566677776544333
No 146
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=23.85 E-value=5.2e+02 Score=22.97 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=11.4
Q ss_pred cchhhhHHHHHHHHHHHHHH
Q 022445 263 STQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 263 s~~~~~G~~li~~g~~~~~~ 282 (297)
+....++.++.+.+..+..+
T Consensus 369 ~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 369 PGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666665533
No 147
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=23.62 E-value=5.7e+02 Score=23.37 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc-cccchHHHHHHHHHHHHH
Q 022445 94 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNIS 148 (297)
Q Consensus 94 pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~-~~~~~~~G~l~~l~a~~~ 148 (297)
-+...+.+++ .++|++......- .+.|.+-+... +.-..+...+.++++++.
T Consensus 240 ~l~~~~~~~~-~~gk~~~~~~~nG--~LAGLVaita~a~~v~p~~A~viG~iag~~ 292 (403)
T TIGR00836 240 GLTWLLIDWL-KHGKPTLLGACNG--ILAGLVAITPGCGVVTPWGAIIIGLVAGVL 292 (403)
T ss_pred HHHHHHHHHH-hcCCCCHHHHHhh--hhhhheeecCCCCCCCHHHHHHHHHHHHHH
Confidence 3444444443 3456776654432 33444433322 222334455555555444
No 148
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=22.17 E-value=3.3e+02 Score=20.12 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.6
Q ss_pred CCCHHHHHHHH
Q 022445 51 PIDSKLLKLLI 61 (297)
Q Consensus 51 ~~~~~~~~~~~ 61 (297)
..++..++...
T Consensus 66 ~~~~~~~~~~~ 76 (141)
T PF07331_consen 66 PFDRVDWKRVL 76 (141)
T ss_pred cccHHHHHHHH
Confidence 34444444333
No 149
>PF04039 MnhB: Domain related to MnhB subunit of Na+/H+ antiporter; InterPro: IPR007182 This domain is found in a possible subunit of the Na+/H+ antiporter [, ] as well as in the bacterial NADH dehydrogenase subunit. Usually four transmembrane regions are found in this domain.
Probab=21.17 E-value=3.4e+02 Score=19.85 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=28.2
Q ss_pred hHHhHHhhhhhHHHhhhhHhhhCCcccch-hhhHHHHHHHHHHHHHH
Q 022445 237 LTHAVGNVLKRVFVIGFSILAFGNKISTQ-TGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 237 ~~~s~~~~~~~v~~~~~~~~~~~e~~s~~-~~~G~~li~~g~~~~~~ 282 (297)
........+-|+......+++++.+.++- ...|.++.-.+.+++..
T Consensus 3 Il~~~~r~l~p~~~~~~~yl~~~Gh~sPGGGFqgG~ila~a~il~~l 49 (124)
T PF04039_consen 3 ILRTVARLLFPFILLFGLYLLLHGHLSPGGGFQGGVILAAAFILLYL 49 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHH
Confidence 33445566777777777788887766554 45555555555555443
No 150
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=20.48 E-value=1.1e+02 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=24.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022445 133 SFNWTGFISAMISNISFTYRSIYSKKAMTD 162 (297)
Q Consensus 133 ~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~ 162 (297)
+.+..|.++.-.-.+.|++|.++.|.+.++
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ed 131 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDED 131 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCC
Confidence 446788888888899999999999987544
No 151
>PRK10489 enterobactin exporter EntS; Provisional
Probab=20.37 E-value=6.2e+02 Score=22.55 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=10.4
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 022445 264 TQTGIGTVIAIAGVAAYSY 282 (297)
Q Consensus 264 ~~~~~G~~li~~g~~~~~~ 282 (297)
...+.|....+.+++....
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 380 SASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3345565656666665544
No 152
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=20.07 E-value=3.2e+02 Score=21.10 Aligned_cols=17 Identities=6% Similarity=-0.074 Sum_probs=8.2
Q ss_pred HhHHhhhhhHHHhhhhH
Q 022445 239 HAVGNVLKRVFVIGFSI 255 (297)
Q Consensus 239 ~s~~~~~~~v~~~~~~~ 255 (297)
.+++.|+-|++..+.+.
T Consensus 77 aa~lvYllPLl~li~ga 93 (154)
T PRK10862 77 SALLVYMTPLVGLFLGA 93 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555555443
Done!