Query 022445
Match_columns 297
No_of_seqs 132 out of 1416
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 05:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 3.9E-07 1.3E-11 65.7 10.0 71 61-131 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.5 3.8E-07 1.3E-11 68.2 7.2 60 225-284 45-105 (137)
3 2i68_A Protein EMRE; transmemb 98.4 4.4E-07 1.5E-11 67.8 6.7 70 61-130 34-104 (137)
4 3b5d_A Multidrug transporter E 98.1 1.3E-05 4.4E-10 57.6 8.3 59 226-284 46-105 (110)
5 3l1l_A Arginine/agmatine antip 51.8 28 0.00096 30.3 6.4 23 265-287 409-431 (445)
6 2b2h_A AMT-1, ammonium transpo 26.7 3.1E+02 0.011 23.7 19.4 74 93-171 230-304 (399)
7 3l1l_A Arginine/agmatine antip 16.9 4.8E+02 0.016 22.1 8.9 10 136-145 411-420 (445)
8 1u7g_A Probable ammonium trans 14.3 5.9E+02 0.02 21.9 24.0 80 94-177 242-323 (385)
9 2jp3_A FXYD domain-containing 9.1 2E+02 0.0067 17.9 2.1 15 267-281 23-37 (67)
10 3dh4_A Sodium/glucose cotransp 8.4 1E+03 0.035 21.1 10.9 152 136-297 329-485 (530)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.60 E-value=3.9e-07 Score=65.72 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeeccc
Q 022445 61 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 131 (297)
Q Consensus 61 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~~ 131 (297)
....+++.....+...++++.|.+.+..+ .+..|+++.+.+++++||++++.++.|+.+++.|++.....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45455678888999999999999999888 899999999999999999999999999999999999876544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.47 E-value=3.8e-07 Score=68.16 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=41.9
Q ss_pred HHHHHHhhccchhHHhHH-hhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 225 QLATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 225 ~~~~~~~~~~~~~~~s~~-~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
++...++|+.++...... ..+.|+++.++|++++||++|+.+++|++++++|+++.+..+
T Consensus 45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 444568899999877665 899999999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.43 E-value=4.4e-07 Score=67.84 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhHHHHH-HhhHHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc
Q 022445 61 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 130 (297)
Q Consensus 61 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~ 130 (297)
....+++.+...+++.+++++|++.+..+ .++.|+++.+++++++||++++.+++|+.++++|+++....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44455678889999999999999999888 89999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.11 E-value=1.3e-05 Score=57.65 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=51.2
Q ss_pred HHHHHhhccchhHHhHH-hhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhh
Q 022445 226 LATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 284 (297)
Q Consensus 226 ~~~~~~~~~~~~~~s~~-~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~ 284 (297)
....++|+.+....... ..+.|+.+.+.+++++||++|..+++|..+++.|+...+..+
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33457789888877555 899999999999999999999999999999999999987643
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=51.80 E-value=28 Score=30.33 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHH
Q 022445 265 QTGIGTVIAIAGVAAYSYIKAQM 287 (297)
Q Consensus 265 ~~~~G~~li~~g~~~~~~~~~~~ 287 (297)
....|...+..|..+|...++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 45668888899998887655443
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=26.69 E-value=3.1e+02 Score=23.73 Aligned_cols=74 Identities=11% Similarity=0.003 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeec-ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHH
Q 022445 93 EPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL-TELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAY 171 (297)
Q Consensus 93 ~pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~-~~~~~~~~G~l~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~ 171 (297)
.-+...+.+++. +|++......-. ++|.+-+.. .+.-..+...+.++++++..-....+.+|+ +-.|+......
T Consensus 230 g~l~~~~~~~~~--gk~~~~~~~nG~--lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl-~iDD~l~a~~v 304 (399)
T 2b2h_A 230 AGFVWMVIGWIK--GKPGSLGIVSGA--IAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKK-KIDESLDAWAI 304 (399)
T ss_dssp HHHHHHHHHHHH--SCCCHHHHHHHH--HHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTCHHHH
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHH--HHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCceec
Confidence 344555566665 677766544332 333333222 222223444555555555544443444443 33344444333
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=16.91 E-value=4.8e+02 Score=22.15 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 022445 136 WTGFISAMIS 145 (297)
Q Consensus 136 ~~G~l~~l~a 145 (297)
..|..+.+.+
T Consensus 411 ~~~~~~~~~g 420 (445)
T 3l1l_A 411 MWSFVTLMVI 420 (445)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=14.29 E-value=5.9e+02 Score=21.88 Aligned_cols=80 Identities=9% Similarity=-0.053 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeec-ccccchHHHHHHHHHHHHHHHHHHH-HHHHhhccCCchhHHHH
Q 022445 94 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL-TELSFNWTGFISAMISNISFTYRSI-YSKKAMTDMDSTNIYAY 171 (297)
Q Consensus 94 pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~-~~~~~~~~G~l~~l~a~~~~a~~~v-~~~~~~~~~~~~~~~~~ 171 (297)
-+...+.+++ .++|++......-. ++|.+-+.. .+.-..+...+.++++++..-.... +.+|+ +-.|+......
T Consensus 242 ~l~~~~~~~~-~~gk~~~~~~~nG~--lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l-~iDD~l~a~~v 317 (385)
T 1u7g_A 242 ILGWIFGEWA-LRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDVFGV 317 (385)
T ss_dssp HHHHHHHHHH-HHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGHHHH
T ss_pred HHHHHHHHHH-HcCCCCHHHHHHHH--HHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCCCCCCEee
Confidence 3444455554 45677766544332 233332222 2222234555666666655444443 33443 44455555444
Q ss_pred HHHHHH
Q 022445 172 ISIIAL 177 (297)
Q Consensus 172 ~~~~~~ 177 (297)
-...+.
T Consensus 318 Hgv~Gi 323 (385)
T 1u7g_A 318 HGVCGI 323 (385)
T ss_dssp HHHHHH
T ss_pred cccccH
Confidence 444443
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=9.14 E-value=2e+02 Score=17.89 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHH
Q 022445 267 GIGTVIAIAGVAAYS 281 (297)
Q Consensus 267 ~~G~~li~~g~~~~~ 281 (297)
+++.++.+.|+++..
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 455566666766544
No 10
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=8.43 E-value=1e+03 Score=21.07 Aligned_cols=152 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC-----CchhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchhHHH
Q 022445 136 WTGFISAMISNISFTYRSIYSKKAMTDM-----DSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFI 210 (297)
Q Consensus 136 ~~G~l~~l~a~~~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (297)
...-.+.-.++...+....+.+...+++ ++.+.....-....+..+............. .........
T Consensus 329 llAA~mST~ss~l~s~st~~~~Diy~~~~~~~~s~~~~~~v~R~~~v~~~i~a~~~a~~~~~~~-------~~~~~~~~~ 401 (530)
T 3dh4_A 329 LAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIG-------QAFQYIQEY 401 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCSCSSHHHHHHHHHHHHHHHHHHHHGGGGGGCS-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHHHHhhHHHHHH
Q 022445 211 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEE 290 (297)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~~ 290 (297)
..+...+++....--+.. ||.+..-.-.......+..+.+....-+-+.-.....|..+.++..++.+...++++++
T Consensus 402 ~g~~~~~~~~~~llgl~w---kr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~vSl~t~~~~~~ 478 (530)
T 3dh4_A 402 TGLVSPGILAVFLLGLFW---KKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDD 478 (530)
T ss_dssp HTTTHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCSSSSC
T ss_pred HHHHhHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q ss_pred HHhhhhC
Q 022445 291 KRQMKAA 297 (297)
Q Consensus 291 ~~~~~~~ 297 (297)
+++.+.+
T Consensus 479 ~~~~~~~ 485 (530)
T 3dh4_A 479 PKGISVT 485 (530)
T ss_dssp TTCCCCC
T ss_pred ccccccc
Done!