Query 022445
Match_columns 297
No_of_seqs 132 out of 1416
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 05:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022445.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022445hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 51.2 57 0.0041 26.2 24.0 80 94-176 239-320 (383)
2 d1pv7a_ f.38.1.2 (A:) Lactose 30.7 1E+02 0.0074 23.2 9.2 12 9-20 27-38 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 17.3 2.1E+02 0.015 21.9 14.2 7 99-105 198-204 (447)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 17.2 51 0.0037 14.8 3.0 17 137-153 3-19 (27)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 7.0 2.5E+02 0.018 16.9 3.9 15 266-280 68-82 (103)
6 d1iwga8 f.35.1.1 (A:513-566,A: 7.0 3.9E+02 0.028 18.7 9.6 29 248-276 95-123 (222)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 6.1 4.1E+02 0.03 18.1 9.3 49 232-280 61-109 (199)
8 d2h5na1 a.287.1.2 (A:1-132) Hy 2.5 6.6E+02 0.048 14.9 3.4 29 119-148 88-116 (132)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 2.4 1.7E+02 0.013 17.8 0.0 16 271-286 40-55 (100)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 2.4 3.8E+02 0.028 11.9 3.8 10 101-110 19-28 (30)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=51.18 E-value=57 Score=26.18 Aligned_cols=80 Identities=9% Similarity=-0.006 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCcCChHHHHHHHHHHhhhheeecc-cccchHHHHHHHHHHHHHH-HHHHHHHHHhhccCCchhHHHH
Q 022445 94 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISF-TYRSIYSKKAMTDMDSTNIYAY 171 (297)
Q Consensus 94 pi~~~i~~~~~~~e~~s~~~~~~~~~~~~Gv~~~~~~-~~~~~~~G~l~~l~a~~~~-a~~~v~~~~~~~~~~~~~~~~~ 171 (297)
-..+......+.++|.+......-. +.|.+-+... |.-..+...+.+.++++.. -.+..+.+|. +-.||......
T Consensus 239 ~~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD~~~~~~v 315 (383)
T d1u7ga_ 239 AILGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDVFGV 315 (383)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-ccccccceEee
Confidence 3333333444566778777655432 3344443322 2222333455555554443 3334343443 43455555444
Q ss_pred HHHHH
Q 022445 172 ISIIA 176 (297)
Q Consensus 172 ~~~~~ 176 (297)
-...+
T Consensus 316 Hg~~G 320 (383)
T d1u7ga_ 316 HGVCG 320 (383)
T ss_dssp HHHHH
T ss_pred hhhhH
Confidence 44333
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=30.73 E-value=1e+02 Score=23.18 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=5.6
Q ss_pred HHHHhHHHhhcC
Q 022445 9 FNILNKRIYNYF 20 (297)
Q Consensus 9 ~~~~~K~~~~~~ 20 (297)
..++..++.+++
T Consensus 27 ~~~l~~~l~~~~ 38 (417)
T d1pv7a_ 27 FPFFPIWLHDIN 38 (417)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 344555554443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.27 E-value=2.1e+02 Score=21.86 Aligned_cols=7 Identities=0% Similarity=-0.092 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 022445 99 AASQFIL 105 (297)
Q Consensus 99 i~~~~~~ 105 (297)
++.+.+.
T Consensus 198 ~~~~~~~ 204 (447)
T d1pw4a_ 198 LFAFAMM 204 (447)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 3333333
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.18 E-value=51 Score=14.76 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022445 137 TGFISAMISNISFTYRS 153 (297)
Q Consensus 137 ~G~l~~l~a~~~~a~~~ 153 (297)
.|.+..-++++++|.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777888888888775
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.02 E-value=2.5e+02 Score=16.92 Aligned_cols=15 Identities=20% Similarity=0.649 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHH
Q 022445 266 TGIGTVIAIAGVAAY 280 (297)
Q Consensus 266 ~~~G~~li~~g~~~~ 280 (297)
++++++.++.|+.++
T Consensus 68 r~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 68 RCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.00 E-value=3.9e+02 Score=18.72 Aligned_cols=29 Identities=14% Similarity=-0.018 Sum_probs=20.8
Q ss_pred HHHhhhhHhhhCCcccchhhhHHHHHHHH
Q 022445 248 VFVIGFSILAFGNKISTQTGIGTVIAIAG 276 (297)
Q Consensus 248 v~~~~~~~~~~~e~~s~~~~~G~~li~~g 276 (297)
+.+.+.+..+.|.+++....+|.++.+.-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34555677788889999888887775433
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.05 E-value=4.1e+02 Score=18.14 Aligned_cols=49 Identities=22% Similarity=0.106 Sum_probs=30.7
Q ss_pred hccchhHHhHHhhhhhHHHhhhhHhhhCCcccchhhhHHHHHHHHHHHH
Q 022445 232 ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 280 (297)
Q Consensus 232 ~~~~~~~~s~~~~~~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~~~ 280 (297)
+..-+.........-.+........++|.+++.....+..+.+....-+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 4333333444444445556666677889999988888877776655433
No 8
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.45 E-value=6.6e+02 Score=14.91 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=18.0
Q ss_pred HHHhhhheeecccccchHHHHHHHHHHHHH
Q 022445 119 PVVIGVSMASLTELSFNWTGFISAMISNIS 148 (297)
Q Consensus 119 ~~~~Gv~~~~~~~~~~~~~G~l~~l~a~~~ 148 (297)
....|+++.+-+|...+-.. ++.+++.+|
T Consensus 88 asylgvimasdgdiddnela-lwtlistlc 116 (132)
T d2h5na1 88 ASYLGVIMASDGDIDDNELA-LWTLISTLC 116 (132)
T ss_dssp HHHHHHHSCBTTBCCHHHHH-HHHHHHHHH
T ss_pred HHHhhheeccCCCCCccHhH-HHHHHHHHh
Confidence 35678888877766555333 455666555
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.42 E-value=1.7e+02 Score=17.83 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhHH
Q 022445 271 VIAIAGVAAYSYIKAQ 286 (297)
Q Consensus 271 ~li~~g~~~~~~~~~~ 286 (297)
.+.+.+.+.|...+.|
T Consensus 40 ~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 40 TIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3334444444443333
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.36 E-value=3.8e+02 Score=11.90 Aligned_cols=10 Identities=0% Similarity=-0.054 Sum_probs=5.6
Q ss_pred HHHHhCCcCC
Q 022445 101 SQFILGQQLP 110 (297)
Q Consensus 101 ~~~~~~e~~s 110 (297)
-.++++|.+.
T Consensus 19 faiffreppr 28 (30)
T d2axtt1 19 FAIFFREPPR 28 (30)
T ss_dssp HHHHTSCCCC
T ss_pred HHHHhcCCCC
Confidence 3456677553
Done!