Query 022450
Match_columns 297
No_of_seqs 108 out of 129
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11891 DUF3411: Domain of un 100.0 3.4E-47 7.3E-52 336.0 7.2 116 180-296 1-116 (180)
2 PF04285 DUF444: Protein of un 93.5 0.19 4.2E-06 50.6 6.7 72 56-131 50-128 (421)
3 PLN03138 Protein TOC75; Provis 93.4 0.2 4.3E-06 54.1 7.0 21 2-22 5-25 (796)
4 TIGR02877 spore_yhbH sporulati 93.0 0.27 5.9E-06 49.0 6.9 75 56-134 49-127 (371)
5 PRK05325 hypothetical protein; 91.2 0.6 1.3E-05 46.9 6.8 20 56-75 37-56 (401)
6 COG1512 Beta-propeller domains 89.0 0.4 8.7E-06 45.8 3.5 10 95-104 257-266 (271)
7 COG4907 Predicted membrane pro 88.2 0.39 8.4E-06 49.7 3.0 11 30-40 546-556 (595)
8 COG1512 Beta-propeller domains 82.3 1.4 3E-05 42.2 3.5 15 80-94 237-251 (271)
9 COG2718 Uncharacterized conser 77.9 5.2 0.00011 40.7 6.0 40 90-133 91-130 (423)
10 PF02979 NHase_alpha: Nitrile 67.6 4.9 0.00011 37.0 2.9 46 145-190 17-68 (188)
11 KOG3973 Uncharacterized conser 67.3 6.7 0.00015 39.7 4.0 14 69-82 324-337 (465)
12 COG3028 Uncharacterized protei 62.4 20 0.00044 33.0 5.8 52 137-188 59-133 (187)
13 KOG3973 Uncharacterized conser 57.2 15 0.00033 37.3 4.4 9 61-69 412-420 (465)
14 PTZ00146 fibrillarin; Provisio 56.3 14 0.0003 35.9 3.8 37 127-165 107-143 (293)
15 PTZ00146 fibrillarin; Provisio 53.5 16 0.00035 35.4 3.8 8 219-226 203-210 (293)
16 PF08671 SinI: Anti-repressor 52.5 13 0.00027 25.0 2.0 21 141-162 9-29 (30)
17 KOG0105 Alternative splicing f 49.3 22 0.00049 33.5 3.9 14 118-131 127-140 (241)
18 PLN03134 glycine-rich RNA-bind 41.2 30 0.00064 29.6 3.2 21 13-33 21-41 (144)
19 KOG3074 Transcriptional regula 36.6 23 0.00049 34.2 1.9 14 118-131 47-60 (263)
20 PRK05255 hypothetical protein; 34.1 1.3E+02 0.0027 27.4 6.1 57 136-192 48-127 (171)
21 PF02084 Bindin: Bindin; Inte 32.8 1.1E+02 0.0023 29.4 5.7 18 125-142 108-125 (238)
22 TIGR01323 nitrile_alph nitrile 31.6 55 0.0012 30.3 3.5 44 145-188 11-60 (185)
23 PRK12799 motB flagellar motor 31.4 36 0.00078 34.8 2.5 26 218-243 26-51 (421)
24 PF06459 RR_TM4-6: Ryanodine R 30.1 43 0.00093 32.3 2.7 10 108-117 224-233 (274)
25 PF13677 MotB_plug: Membrane M 29.8 59 0.0013 24.1 2.8 28 217-244 15-42 (58)
26 TIGR03795 chp_BMA0021 conserve 28.4 46 0.001 28.5 2.3 20 168-187 18-39 (114)
27 PF00813 FliP: FliP family; I 28.2 2.9E+02 0.0063 25.7 7.5 28 218-245 144-171 (194)
28 PRK11511 DNA-binding transcrip 26.7 3.6E+02 0.0078 22.1 7.9 82 121-204 9-92 (127)
29 PF15059 Speriolin_C: Sperioli 26.3 34 0.00074 30.6 1.2 69 129-197 24-117 (146)
30 PF04360 Serglycin: Serglycin 25.5 37 0.0008 30.4 1.2 26 18-43 4-29 (150)
31 PF15207 TMEM240: TMEM240 fami 23.3 91 0.002 28.3 3.3 25 215-240 84-108 (180)
32 TIGR03793 TOMM_pelo TOMM prope 22.9 57 0.0012 25.8 1.7 13 176-188 17-29 (77)
33 PF02084 Bindin: Bindin; Inte 22.7 1.3E+02 0.0029 28.8 4.4 19 165-184 127-145 (238)
34 KOG1456 Heterogeneous nuclear 22.5 64 0.0014 33.3 2.4 20 176-195 106-125 (494)
35 PF07631 PSD4: Protein of unkn 22.2 1.5E+02 0.0033 25.2 4.3 30 139-188 21-51 (128)
36 KOG3158 HSP90 co-chaperone p23 22.0 85 0.0018 29.0 2.9 11 35-45 70-80 (180)
37 PRK06925 flagellar motor prote 21.8 77 0.0017 29.0 2.6 26 217-242 13-38 (230)
38 PF07526 POX: Associated with 21.5 2.8E+02 0.006 24.2 5.8 16 168-183 124-139 (140)
39 PF04858 TH1: TH1 protein; In 20.9 1.7E+02 0.0037 31.2 5.2 42 118-160 29-78 (584)
40 PF12244 DUF3606: Protein of u 20.7 1.8E+02 0.004 21.5 4.0 34 127-160 23-56 (57)
41 PRK09038 flagellar motor prote 20.6 84 0.0018 29.8 2.7 26 217-242 15-40 (281)
No 1
>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.
Probab=100.00 E-value=3.4e-47 Score=336.04 Aligned_cols=116 Identities=47% Similarity=0.812 Sum_probs=110.4
Q ss_pred HHHhcCcchhHHHhHHhhhhhhhhhhhhHhhccccchhHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCcCCchhhhH
Q 022450 180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRI 259 (297)
Q Consensus 180 ~RlLADP~FlfKl~iE~~I~i~~~~~aE~~kRge~F~~ElDfV~adlv~g~v~dfaLVwLLAPt~s~g~~~~sag~~~~l 259 (297)
+||||||+|||||++||+||++|+++|||++|||+||+|||||++|+|+++|+||+||||||||+++++++.+.. .+.+
T Consensus 1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~-~~~~ 79 (180)
T PF11891_consen 1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSP-GGGL 79 (180)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCccccccc-chHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999998775321 2689
Q ss_pred HHHhccCCCcccccCCCCCCCchhhhHHHhhhcceee
Q 022450 260 QNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQV 296 (297)
Q Consensus 260 q~~l~~lP~n~Fq~~~pG~~fsl~QRiga~~~KG~~f 296 (297)
|+++++||+||||+++||++||++||++||+|||++|
T Consensus 80 ~~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l 116 (180)
T PF11891_consen 80 QKFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKL 116 (180)
T ss_pred HHHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHh
Confidence 9999999999999999999999999999999999987
No 2
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=93.49 E-value=0.19 Score=50.64 Aligned_cols=72 Identities=35% Similarity=0.528 Sum_probs=31.3
Q ss_pred CCceeccCCCCcccCcCCC----CccccCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHH
Q 022450 56 TPKTIEIPGKITEESADCE----PRIHSSGGDGGAGDS---PGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMK 128 (297)
Q Consensus 56 ~~~t~~i~G~~~~~s~~~~----~~i~~~~g~g~~g~~---~~~~gg~~g~~ggG~~~g~~~d~~~~efg~~l~~~~Vl~ 128 (297)
+.+++++.+.+++.-.+-. ..+..+.|++.-|+. +.+++++|+|+|+|.|+++|+|+=+ --++.||.+.
T Consensus 50 ~~V~IP~r~l~Ep~Fr~g~gg~~~~Vg~Gnge~~~GD~I~rp~~g~g~g~G~g~gag~geGeD~fe----~els~eE~~~ 125 (421)
T PF04285_consen 50 EKVSIPIRGLEEPRFRHGQGGQREHVGPGNGEFKEGDVIGRPPGGGGGGDGGGQGAGDGEGEDDFE----FELSREEFLD 125 (421)
T ss_pred ceEeecCCCCCCCceeCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCeEE----EEEEHHHHHH
Confidence 3566777666666443333 222222222222443 2233222222223344555555433 4455666555
Q ss_pred HHH
Q 022450 129 EIE 131 (297)
Q Consensus 129 ea~ 131 (297)
.-.
T Consensus 126 llf 128 (421)
T PF04285_consen 126 LLF 128 (421)
T ss_pred HhH
Confidence 443
No 3
>PLN03138 Protein TOC75; Provisional
Probab=93.42 E-value=0.2 Score=54.15 Aligned_cols=21 Identities=24% Similarity=0.176 Sum_probs=16.1
Q ss_pred CcccccccCCCCCCCCCCCCc
Q 022450 2 SACSSTFRLPNLPNISPQNHN 22 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (297)
++|.+.++-++++.-.||+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (796)
T PLN03138 5 STMVSAAASTSLSSSRPQLSS 25 (796)
T ss_pred cccceeccCCCccCCCccccc
Confidence 578888888888887777654
No 4
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=93.03 E-value=0.27 Score=48.96 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=34.8
Q ss_pred CCceeccCCCCcccCcCC---CCccccCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHH
Q 022450 56 TPKTIEIPGKITEESADC---EPRIHSSGGDGGAGDS-PGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE 131 (297)
Q Consensus 56 ~~~t~~i~G~~~~~s~~~---~~~i~~~~g~g~~g~~-~~~~gg~~g~~ggG~~~g~~~d~~~~efg~~l~~~~Vl~ea~ 131 (297)
+.+.+||.+.+++.-.+- +..++.+.|.---|+. +-..+|+||++|.|.|+|+|+|+=+ --++.||.++.-.
T Consensus 49 ~~V~IPir~l~Ep~F~~g~~~~~~Vg~Gng~~~~GD~i~rp~~~~ggg~g~gag~geGed~fe----~e~s~eE~~~~lf 124 (371)
T TIGR02877 49 KKIKVPIRGLKEYRFRYDWNKQKRVGQGDGNEKVGDVIGRERAGGEGGGGKGAGDQEGEDYYE----TEVTLEELFELLF 124 (371)
T ss_pred ceEEccCCCCccceEEeCCCCCCeecCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHH
Confidence 367777777777644332 3333322222122444 1111111222223344445555444 4567888877766
Q ss_pred HcC
Q 022450 132 LKG 134 (297)
Q Consensus 132 rr~ 134 (297)
.-.
T Consensus 125 EdL 127 (371)
T TIGR02877 125 EDL 127 (371)
T ss_pred hhc
Confidence 543
No 5
>PRK05325 hypothetical protein; Provisional
Probab=91.16 E-value=0.6 Score=46.94 Aligned_cols=20 Identities=10% Similarity=-0.165 Sum_probs=13.4
Q ss_pred CCceeccCCCCcccCcCCCC
Q 022450 56 TPKTIEIPGKITEESADCEP 75 (297)
Q Consensus 56 ~~~t~~i~G~~~~~s~~~~~ 75 (297)
+.+.++|++.+++.-.+...
T Consensus 37 ~~v~IPi~~i~Ep~F~~g~~ 56 (401)
T PRK05325 37 EVVSIPIRDIDEPKFRYGRG 56 (401)
T ss_pred ceEEecCCCCccceEEeCCC
Confidence 46777888877776555443
No 6
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=88.99 E-value=0.4 Score=45.79 Aligned_cols=10 Identities=90% Similarity=1.846 Sum_probs=3.8
Q ss_pred CCCCCCCCCC
Q 022450 95 GGGGDSGGGG 104 (297)
Q Consensus 95 g~~g~~ggG~ 104 (297)
||||+.||||
T Consensus 257 gGGgS~GGGG 266 (271)
T COG1512 257 GGGGSSGGGG 266 (271)
T ss_pred CCCCCCCCCC
Confidence 3333333333
No 7
>COG4907 Predicted membrane protein [Function unknown]
Probab=88.25 E-value=0.39 Score=49.68 Aligned_cols=11 Identities=0% Similarity=-0.067 Sum_probs=5.8
Q ss_pred eeeecccccCC
Q 022450 30 FLSLRHSTATN 40 (297)
Q Consensus 30 ~~~~~~~~~~~ 40 (297)
|.-.||+-.+.
T Consensus 546 ~~i~h~nysr~ 556 (595)
T COG4907 546 SPIFHNNYSRS 556 (595)
T ss_pred eeEEecchhhh
Confidence 34456665544
No 8
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=82.32 E-value=1.4 Score=42.21 Aligned_cols=15 Identities=53% Similarity=1.006 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCC
Q 022450 80 SGGDGGAGDSPGGGG 94 (297)
Q Consensus 80 ~~g~g~~g~~~~~~g 94 (297)
++|.|++|+++|+++
T Consensus 237 ~~g~g~~g~~gg~~~ 251 (271)
T COG1512 237 SSGSGGSGGSGGGSS 251 (271)
T ss_pred cCCCCCCCCCCCCCC
Confidence 345555555555444
No 9
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=77.92 E-value=5.2 Score=40.71 Aligned_cols=40 Identities=45% Similarity=0.764 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHc
Q 022450 90 PGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELK 133 (297)
Q Consensus 90 ~~~~gg~~g~~ggG~~~g~~~d~~~~efg~~l~~~~Vl~ea~rr 133 (297)
++||||+|-|.|+|.+++++||+ |=--++.++|+..-.+-
T Consensus 91 ~~~ggg~g~g~g~~ag~~egED~----F~~~is~~e~~dllFed 130 (423)
T COG2718 91 PQGGGGGGSGKGQAAGDGEGEDE----FVFQISREEVLDLLFED 130 (423)
T ss_pred CCCCCCCCCCCCCccCCCCCcch----hheeeehhHHHHHHHHH
Confidence 34443343333344444444443 43556667776655543
No 10
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=67.58 E-value=4.9 Score=37.02 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=32.0
Q ss_pred HHHcCCCHHHHHHHHhhhCCc-chh---HHHHHHh--hhhHHHHhcCcchhH
Q 022450 145 AKTVGIRKMFLLRYLDLQGSV-WPL---GFLMRYC--FMLRDRMLADPSFLF 190 (297)
Q Consensus 145 ~~~g~I~~~~L~rfl~L~asp-~~l---~~L~r~f--~gfR~RlLADP~Flf 190 (297)
++.|.|+++.+.+..+...+. .|. +-+-|++ +.||.||||||.=..
T Consensus 17 ~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~Dp~FK~rLLaD~~aA~ 68 (188)
T PF02979_consen 17 IEKGLITPAEVDRIIETYESRVGPRNGARVVARAWTDPAFKARLLADPTAAI 68 (188)
T ss_dssp HHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHHSHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCccccceeehhhhCCHHHHHHHHHCHHHHH
Confidence 567888999999888876543 222 3455555 999999999986543
No 11
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=67.35 E-value=6.7 Score=39.72 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=6.3
Q ss_pred cCcCCCCccccCCC
Q 022450 69 ESADCEPRIHSSGG 82 (297)
Q Consensus 69 ~s~~~~~~i~~~~g 82 (297)
++.|..+.-++.+|
T Consensus 324 qqq~~~~~~ggrgg 337 (465)
T KOG3973|consen 324 QQQHTFDRQGGRGG 337 (465)
T ss_pred HhcCCCCCCCCcCC
Confidence 33455554444333
No 12
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.38 E-value=20 Score=32.99 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHc-CCCHH--------------------HHHHHHhhhCCcch-hHHHHHHhhhhHHHHhcC-cch
Q 022450 137 LPDDMMEAAKTV-GIRKM--------------------FLLRYLDLQGSVWP-LGFLMRYCFMLRDRMLAD-PSF 188 (297)
Q Consensus 137 LPaDl~~A~~~g-~I~~~--------------------~L~rfl~L~asp~~-l~~L~r~f~gfR~RlLAD-P~F 188 (297)
||.||++|++.. +|.++ -++.+|+=-.+..- --.+.+++-.||+||+|| +.-
T Consensus 59 L~E~L~~Ai~~aqri~~~~arrRQlQyIGKlmR~~DvepI~~~Ldkl~~~~~q~~a~lHklE~~RdrLia~GD~A 133 (187)
T COG3028 59 LDEDLLEAIELAQRIKSEIARRRQLQYIGKLMRDRDVEPIRAALDKLRNRHNQQVALLHKLEQLRDRLIAEGDGA 133 (187)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 588999998765 44444 23333332222110 023445568899999998 543
No 13
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=57.22 E-value=15 Score=37.30 Aligned_cols=9 Identities=22% Similarity=0.121 Sum_probs=4.7
Q ss_pred ccCCCCccc
Q 022450 61 EIPGKITEE 69 (297)
Q Consensus 61 ~i~G~~~~~ 69 (297)
-|+|-.+|-
T Consensus 412 ~~sgsg~qg 420 (465)
T KOG3973|consen 412 WISGSGVQG 420 (465)
T ss_pred eeecccccC
Confidence 345555553
No 14
>PTZ00146 fibrillarin; Provisional
Probab=56.30 E-value=14 Score=35.89 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=20.0
Q ss_pred HHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhhhCCc
Q 022450 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSV 165 (297)
Q Consensus 127 l~ea~rr~~sLPaDl~~A~~~g~I~~~~L~rfl~L~asp 165 (297)
.+.|.-....|-+.+...++.-.|.+- .+.|||=+.+
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG--~~VLDLGaG~ 143 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPG--SKVLYLGAAS 143 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCC--CEEEEeCCcC
Confidence 456666666665555444444444333 2456666655
No 15
>PTZ00146 fibrillarin; Provisional
Probab=53.49 E-value=16 Score=35.44 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=5.2
Q ss_pred HHHHHHHH
Q 022450 219 FELYLADL 226 (297)
Q Consensus 219 lDfV~adl 226 (297)
+|+||+|+
T Consensus 203 vDvV~~Dv 210 (293)
T PTZ00146 203 VDVIFADV 210 (293)
T ss_pred CCEEEEeC
Confidence 56666665
No 16
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=52.50 E-value=13 Score=25.00 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=14.3
Q ss_pred HHHHHHHcCCCHHHHHHHHhhh
Q 022450 141 MMEAAKTVGIRKMFLLRYLDLQ 162 (297)
Q Consensus 141 l~~A~~~g~I~~~~L~rfl~L~ 162 (297)
|.+|.++ ||+.+.+.+||+.+
T Consensus 9 i~eA~~~-Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 9 IKEAKES-GLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHhC
Confidence 4556655 59999999999875
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=49.27 E-value=22 Score=33.48 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=8.6
Q ss_pred ccccCHHHHHHHHH
Q 022450 118 GPILKFEEVMKEIE 131 (297)
Q Consensus 118 g~~l~~~~Vl~ea~ 131 (297)
|..+++..-|+||+
T Consensus 127 gSWQDLKDHmReaG 140 (241)
T KOG0105|consen 127 GSWQDLKDHMREAG 140 (241)
T ss_pred CchHHHHHHHHhhC
Confidence 55556666666664
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=41.23 E-value=30 Score=29.55 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=9.8
Q ss_pred CCCCCCCCCcccccceeeeee
Q 022450 13 LPNISPQNHNIVMPTTVFLSL 33 (297)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ 33 (297)
.|.-+.+..---++++||+.=
T Consensus 21 ~~~~~~~~~~~~~~~~lfVgn 41 (144)
T PLN03134 21 VPVTSMLGSLRLMSTKLFIGG 41 (144)
T ss_pred CccccccccccCCCCEEEEeC
Confidence 344444444334455566553
No 19
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=36.58 E-value=23 Score=34.15 Aligned_cols=14 Identities=36% Similarity=0.313 Sum_probs=9.8
Q ss_pred ccccCHHHHHHHHH
Q 022450 118 GPILKFEEVMKEIE 131 (297)
Q Consensus 118 g~~l~~~~Vl~ea~ 131 (297)
|..|++.||=..|.
T Consensus 47 GRflKIaE~g~~~~ 60 (263)
T KOG3074|consen 47 GRFLKIAEVGAGGR 60 (263)
T ss_pred cceEEEEEeccCCc
Confidence 88888877755544
No 20
>PRK05255 hypothetical protein; Provisional
Probab=34.11 E-value=1.3e+02 Score=27.37 Aligned_cols=57 Identities=21% Similarity=0.095 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHc-CC--------------------CHHHHHHHHhhhCCcchh-HHHHHHhhhhHHHHhc-CcchhHHH
Q 022450 136 GLPDDMMEAAKTV-GI--------------------RKMFLLRYLDLQGSVWPL-GFLMRYCFMLRDRMLA-DPSFLFKV 192 (297)
Q Consensus 136 sLPaDl~~A~~~g-~I--------------------~~~~L~rfl~L~asp~~l-~~L~r~f~gfR~RlLA-DP~FlfKl 192 (297)
.||.+|++|+... +| ..+.+..+|+......-. ....+.+-.||+||++ |+.-+..+
T Consensus 48 pL~e~L~~Ai~ea~ri~~~eA~RRqlqyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~d~al~e~ 127 (171)
T PRK05255 48 PLDEDLRDAILEAQRITSHEARRRQLQYIGKLMRNEDVEPIRAALDKLKNKHNQETARFHKLERWRDRLLAEGDDALTEF 127 (171)
T ss_pred CCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4577888887654 34 234444444444333211 2234456899999999 55544433
No 21
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=32.78 E-value=1.1e+02 Score=29.41 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCCChHHHH
Q 022450 125 EVMKEIELKGVGLPDDMM 142 (297)
Q Consensus 125 ~Vl~ea~rr~~sLPaDl~ 142 (297)
.+.+-.++|..+||-|+-
T Consensus 108 ~ikavLgaTKiDLPVDIN 125 (238)
T PF02084_consen 108 DIKAVLGATKIDLPVDIN 125 (238)
T ss_pred HHHHHhcccccccccccC
Confidence 333444566677776664
No 22
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=31.60 E-value=55 Score=30.28 Aligned_cols=44 Identities=14% Similarity=-0.005 Sum_probs=31.0
Q ss_pred HHHcCCCHHHHHHHHhhhCCc-chh---HHHHHHh--hhhHHHHhcCcch
Q 022450 145 AKTVGIRKMFLLRYLDLQGSV-WPL---GFLMRYC--FMLRDRMLADPSF 188 (297)
Q Consensus 145 ~~~g~I~~~~L~rfl~L~asp-~~l---~~L~r~f--~gfR~RlLADP~F 188 (297)
++.|.|+++.+.+.++...+- .|. +-+.|++ +.||.|||+|..-
T Consensus 11 ~eKGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~a 60 (185)
T TIGR01323 11 KSKGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWVDPEFRALLLKDATA 60 (185)
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhcCHHHHHHHHhChHH
Confidence 567788999888888765542 221 4455555 9999999999654
No 23
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=31.41 E-value=36 Score=34.76 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc
Q 022450 218 EFELYLADLLVGLVVDIALVGMLAPY 243 (297)
Q Consensus 218 ElDfV~adlv~g~v~dfaLVwLLAPt 243 (297)
.|=.-++|+|+++.+=|+|+|+++=+
T Consensus 26 aWkVAYADfvTlLMAFFlLLwsmSsv 51 (421)
T PRK12799 26 SWKIAYADFMTAMMAFFLVMWLLAVS 51 (421)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcC
Confidence 69999999999999999999999853
No 24
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=30.06 E-value=43 Score=32.25 Aligned_cols=10 Identities=40% Similarity=0.591 Sum_probs=4.5
Q ss_pred CCCCCccccc
Q 022450 108 EGNDGEEKEF 117 (297)
Q Consensus 108 ~~~d~~~~ef 117 (297)
|++|+|..||
T Consensus 224 ee~~e~~~~~ 233 (274)
T PF06459_consen 224 EEEDEEGMEY 233 (274)
T ss_pred ccccccceEE
Confidence 4444444443
No 25
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=29.81 E-value=59 Score=24.12 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccc
Q 022450 217 SEFELYLADLLVGLVVDIALVGMLAPYA 244 (297)
Q Consensus 217 ~ElDfV~adlv~g~v~dfaLVwLLAPt~ 244 (297)
..|-+-++|+++.+.+=|+++|.++-.-
T Consensus 15 ~~WlvtyaDlmTLLl~fFVlL~s~s~~d 42 (58)
T PF13677_consen 15 PRWLVTYADLMTLLLAFFVLLFSMSSVD 42 (58)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3689999999999999999999887543
No 26
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=28.42 E-value=46 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.6
Q ss_pred hHHHHHHh--hhhHHHHhcCcc
Q 022450 168 LGFLMRYC--FMLRDRMLADPS 187 (297)
Q Consensus 168 l~~L~r~f--~gfR~RlLADP~ 187 (297)
+|.+-+++ ..||+||++||.
T Consensus 18 lraIA~AW~DpaFr~eLl~DPk 39 (114)
T TIGR03795 18 LRAIALAWHSPEFKDELLADPV 39 (114)
T ss_pred HHHHHHHhCCHHHHHHHHHCHH
Confidence 56666666 899999999997
No 27
>PF00813 FliP: FliP family; InterPro: IPR005838 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia. The type III secretion system is of great interest as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis []. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. It is believed that the family of type III inner membrane proteins are used as structural moieties in a complex with several other subunits [], including the ATPase necessary for driving the secretion system. One such set of inner membrane proteins, termed "P" here for nomenclature purposes, includes the Salmonella and Shigella SpaP, the Yersinia YscR, the Erwinia HrcR, and the Xanthamonas Pro2 genes [], as well as several FliP flagellar biosynthesis genes []. FliP is an ~30Kd protein containing three or four transmembrane (TM) regions.; GO: 0009306 protein secretion, 0016020 membrane
Probab=28.17 E-value=2.9e+02 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccc
Q 022450 218 EFELYLADLLVGLVVDIALVGMLAPYAR 245 (297)
Q Consensus 218 ElDfV~adlv~g~v~dfaLVwLLAPt~s 245 (297)
=+=|++.|+|+++|+=.+=|-|+.|+.-
T Consensus 144 ylPFlvIDlvVasiLmamGMmMl~P~~I 171 (194)
T PF00813_consen 144 YLPFLVIDLVVASILMAMGMMMLPPVTI 171 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCchHH
Confidence 4568899999999999999999999764
No 28
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=26.66 E-value=3.6e+02 Score=22.12 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=53.1
Q ss_pred cCHHHHHHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhhhCCcchhHHHHHHhhh--hHHHHhcCcchhHHHhHHhhh
Q 022450 121 LKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFM--LRDRMLADPSFLFKVGTEIVI 198 (297)
Q Consensus 121 l~~~~Vl~ea~rr~~sLPaDl~~A~~~g~I~~~~L~rfl~L~asp~~l~~L~r~f~g--fR~RlLADP~FlfKl~iE~~I 198 (297)
..+.+|++........ |..+.+.++..++++..|.|.|.-...-.|..|+.+ .+- -...|+.-..=+..++.+++.
T Consensus 9 ~~i~~~~~~I~~~~~~-~~sl~~lA~~~g~S~~~l~r~Fk~~~G~s~~~~l~~-~Rl~~A~~~L~~t~~~i~eIA~~~Gf 86 (127)
T PRK11511 9 ITIHSILDWIEDNLES-PLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS-RKMTEIAQKLKESNEPILYLAERYGF 86 (127)
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHhCC
Confidence 4567777777777655 677788888899999999999998866555566533 333 344444332334666666665
Q ss_pred hhhhhh
Q 022450 199 DSCCAT 204 (297)
Q Consensus 199 ~i~~~~ 204 (297)
.-....
T Consensus 87 ~s~s~F 92 (127)
T PRK11511 87 ESQQTL 92 (127)
T ss_pred CCHHHH
Confidence 544433
No 29
>PF15059 Speriolin_C: Speriolin C-terminus
Probab=26.32 E-value=34 Score=30.57 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=46.4
Q ss_pred HHHHcCCCChHHHHHHHH-------HcCCCHHHHHHHHhhhCC-----------cchhHHHHHHhhhhHHHH------hc
Q 022450 129 EIELKGVGLPDDMMEAAK-------TVGIRKMFLLRYLDLQGS-----------VWPLGFLMRYCFMLRDRM------LA 184 (297)
Q Consensus 129 ea~rr~~sLPaDl~~A~~-------~g~I~~~~L~rfl~L~as-----------p~~l~~L~r~f~gfR~Rl------LA 184 (297)
.-+=+..++|..+.|+-- +..-+.+..+||.++.++ |.+.-+|+++|.-+|+|. .-
T Consensus 24 lyGft~sNipeKi~Q~s~~p~~~~~De~~r~~L~~ry~~im~rL~~lGY~~~~HP~lsE~lVN~yGILr~rp~l~a~~~~ 103 (146)
T PF15059_consen 24 LYGFTVSNIPEKIIQASTNPLDGKVDEEKRQTLTQRYVSIMNRLQKLGYNRRVHPGLSEFLVNTYGILRERPELAASEGG 103 (146)
T ss_pred eecccccccHHHHHhhccCccccccCHHHHHHHHHHHHHHHHHHHHcCCCCccCchHHHHHHHHccccccCcccccCcCc
Confidence 334456677888887765 333466778899888764 455577888887777764 11
Q ss_pred C-cchhHHHhHHhh
Q 022450 185 D-PSFLFKVGTEIV 197 (297)
Q Consensus 185 D-P~FlfKl~iE~~ 197 (297)
. |.||.|+.+|.+
T Consensus 104 ~yp~~L~~~v~~~v 117 (146)
T PF15059_consen 104 SYPDFLRRVVIETV 117 (146)
T ss_pred CCHHHHHHHHHHhc
Confidence 1 888888887765
No 30
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=25.49 E-value=37 Score=30.43 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=19.1
Q ss_pred CCCCcccccceeeeeecccccCCccc
Q 022450 18 PQNHNIVMPTTVFLSLRHSTATNPAL 43 (297)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (297)
+++..||+-..+.|-|.||..-.++-
T Consensus 4 ~~~~rl~LaLalil~l~ssvqG~P~r 29 (150)
T PF04360_consen 4 LQCSRLVLALALILVLDSSVQGAPAR 29 (150)
T ss_pred cccchhHHHHHHHHHhccccccCcch
Confidence 56677888888888888877665554
No 31
>PF15207 TMEM240: TMEM240 family
Probab=23.30 E-value=91 Score=28.29 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhc
Q 022450 215 FWSEFELYLADLLVGLVVDIALVGML 240 (297)
Q Consensus 215 F~~ElDfV~adlv~g~v~dfaLVwLL 240 (297)
-++|+|+++ -+++|.+..-+||||=
T Consensus 84 tkqeidlml-glllgfcisw~l~wmd 108 (180)
T PF15207_consen 84 TKQEIDLML-GLLLGFCISWFLVWMD 108 (180)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 478999987 4788888899999984
No 32
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=22.88 E-value=57 Score=25.85 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=11.7
Q ss_pred hhhHHHHhcCcch
Q 022450 176 FMLRDRMLADPSF 188 (297)
Q Consensus 176 ~gfR~RlLADP~F 188 (297)
+.||.||++||.=
T Consensus 17 p~Fr~~Ll~DPra 29 (77)
T TIGR03793 17 EAFKQALLTNPKE 29 (77)
T ss_pred HHHHHHHHHCHHH
Confidence 8999999999874
No 33
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=22.68 E-value=1.3e+02 Score=28.81 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=12.9
Q ss_pred cchhHHHHHHhhhhHHHHhc
Q 022450 165 VWPLGFLMRYCFMLRDRMLA 184 (297)
Q Consensus 165 p~~l~~L~r~f~gfR~RlLA 184 (297)
||=|+.|+|.+|- ..-|||
T Consensus 127 PYDlGLLLRhLRH-HSNLLA 145 (238)
T PF02084_consen 127 PYDLGLLLRHLRH-HSNLLA 145 (238)
T ss_pred hhhHHHHHHHHHH-HHHHHh
Confidence 7888999887754 334554
No 34
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=22.46 E-value=64 Score=33.31 Aligned_cols=20 Identities=15% Similarity=-0.227 Sum_probs=13.4
Q ss_pred hhhHHHHhcCcchhHHHhHH
Q 022450 176 FMLRDRMLADPSFLFKVGTE 195 (297)
Q Consensus 176 ~gfR~RlLADP~FlfKl~iE 195 (297)
+--.+|+--|++=+-||++=
T Consensus 106 sq~i~R~g~es~~pN~VLl~ 125 (494)
T KOG1456|consen 106 SQCIERPGDESATPNKVLLF 125 (494)
T ss_pred hhhhccCCCCCCCCCeEEEE
Confidence 55667777777777666543
No 35
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=22.22 E-value=1.5e+02 Score=25.15 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHhhhCCcchhHHHHHHhhhhHHHHhcCcch
Q 022450 139 DDMMEAAKTVGI-RKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSF 188 (297)
Q Consensus 139 aDl~~A~~~g~I-~~~~L~rfl~L~asp~~l~~L~r~f~gfR~RlLADP~F 188 (297)
+.|.+|++.|.+ ++++|. .-.+|||+||.+
T Consensus 21 ~~L~~aA~~g~L~~~~~l~--------------------~q~~RML~dpr~ 51 (128)
T PF07631_consen 21 AELLDAAAAGELRTPEQLR--------------------AQAERMLADPRA 51 (128)
T ss_pred HHHHHHHHhCCCCCHHHHH--------------------HHHHHHHcCccH
Confidence 457888888887 444433 345799999987
No 36
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=85 Score=28.97 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=4.2
Q ss_pred ccccCCccccc
Q 022450 35 HSTATNPALCK 45 (297)
Q Consensus 35 ~~~~~~~~~~~ 45 (297)
|.-.+...+|.
T Consensus 70 ~k~~~r~if~i 80 (180)
T KOG3158|consen 70 HKRTSRSIFCI 80 (180)
T ss_pred ccccceEEEEE
Confidence 33333333433
No 37
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=21.78 E-value=77 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccc
Q 022450 217 SEFELYLADLLVGLVVDIALVGMLAP 242 (297)
Q Consensus 217 ~ElDfV~adlv~g~v~dfaLVwLLAP 242 (297)
.+|=.-++|+++.+.+=|+|+|.++=
T Consensus 13 ~~W~vtyaD~~TlLlafFvlL~s~s~ 38 (230)
T PRK06925 13 PKWMVTFSDLITLILVFFILLFSMSQ 38 (230)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999999999884
No 38
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=21.50 E-value=2.8e+02 Score=24.20 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.5
Q ss_pred hHHHHHHhhhhHHHHh
Q 022450 168 LGFLMRYCFMLRDRML 183 (297)
Q Consensus 168 l~~L~r~f~gfR~RlL 183 (297)
++.++|.|+-+|+++.
T Consensus 124 lqamSrhFR~LRdaI~ 139 (140)
T PF07526_consen 124 LQAMSRHFRCLRDAIS 139 (140)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4678999999999974
No 39
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.86 E-value=1.7e+02 Score=31.20 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=24.2
Q ss_pred ccccCHHHHHHHHHHcCCC--------ChHHHHHHHHHcCCCHHHHHHHHh
Q 022450 118 GPILKFEEVMKEIELKGVG--------LPDDMMEAAKTVGIRKMFLLRYLD 160 (297)
Q Consensus 118 g~~l~~~~Vl~ea~rr~~s--------LPaDl~~A~~~g~I~~~~L~rfl~ 160 (297)
+.--.-++|++++.++... +-.++.+=++.|| .++.++++|.
T Consensus 29 ~~~~~~~~~~~~~~~~l~~~D~Imep~i~~~i~~y~~~gG-~p~~vv~~Ls 78 (584)
T PF04858_consen 29 EADEEPEEVLEECLRRLSQPDAIMEPSIFDTIKRYFRAGG-DPEEVVELLS 78 (584)
T ss_pred cCCCChHHHHHHHHHhcCCCCeeeCchHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3334567888888887765 2344555555555 4445555554
No 40
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=20.71 E-value=1.8e+02 Score=21.51 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHh
Q 022450 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLD 160 (297)
Q Consensus 127 l~ea~rr~~sLPaDl~~A~~~g~I~~~~L~rfl~ 160 (297)
++-|.++.--=++.|++|++.-|-+.+-+.+||.
T Consensus 23 v~ywa~~~gvt~~~L~~AV~~vG~~~~~V~~~L~ 56 (57)
T PF12244_consen 23 VRYWAKRFGVTEEQLREAVRAVGNSRAAVRAYLG 56 (57)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHCcCHHHHHHHHc
Confidence 5678888888899999999999999999999874
No 41
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=20.55 E-value=84 Score=29.83 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccc
Q 022450 217 SEFELYLADLLVGLVVDIALVGMLAP 242 (297)
Q Consensus 217 ~ElDfV~adlv~g~v~dfaLVwLLAP 242 (297)
.+|=.-++|+++.+.+=|+|+|.++=
T Consensus 15 ~~WlvtYAD~mTLLlaFFVlL~smS~ 40 (281)
T PRK09038 15 ERWLVSYADFITLLFAFFVVMYAISS 40 (281)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999874
Done!