Query 022450
Match_columns 297
No_of_seqs 108 out of 129
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 05:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 71.6 3.4 0.00012 37.7 4.1 46 144-189 47-98 (226)
2 3hht_A NitrIle hydratase alpha 63.6 6.9 0.00024 35.5 4.3 45 145-189 37-87 (216)
3 3u6r_H Antibody 1:7 (heavy cha 43.8 5.1 0.00018 32.6 0.2 11 58-68 82-92 (149)
4 4fm4_A NitrIle hydratase alpha 43.3 13 0.00045 33.5 2.7 43 145-187 21-69 (209)
5 2zzd_C Thiocyanate hydrolase s 42.5 15 0.00051 33.8 3.0 45 144-188 38-87 (243)
6 1ugp_A NitrIle hydratase alpha 39.2 19 0.00064 32.4 3.0 46 145-190 28-79 (203)
7 3a8g_A NitrIle hydratase subun 38.3 12 0.0004 33.8 1.6 46 144-189 30-81 (207)
8 3p8c_D Wiskott-aldrich syndrom 34.0 9.5 0.00033 35.6 0.3 9 140-148 220-228 (279)
9 3mn2_A Probable ARAC family tr 22.0 2.4E+02 0.008 20.6 7.6 78 123-202 4-85 (108)
10 4b4t_W RPN10, 26S proteasome r 21.5 24 0.00083 32.1 0.6 7 110-116 221-227 (268)
11 3jsj_A Putative TETR-family tr 20.6 2.8E+02 0.0097 21.0 8.3 35 124-160 16-50 (190)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=71.61 E-value=3.4 Score=37.66 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=33.5
Q ss_pred HHHHcCCCHHHHHHHHh-hhCCcchh---HHHHHHh--hhhHHHHhcCcchh
Q 022450 144 AAKTVGIRKMFLLRYLD-LQGSVWPL---GFLMRYC--FMLRDRMLADPSFL 189 (297)
Q Consensus 144 A~~~g~I~~~~L~rfl~-L~asp~~l---~~L~r~f--~gfR~RlLADP~Fl 189 (297)
.++.|.|+++.+.++++ ++..-.|. +.+-|++ +.||.|||+||.=.
T Consensus 47 L~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~aA 98 (226)
T 3qyh_A 47 LIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAG 98 (226)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHHHH
Confidence 46788999999999998 44432232 4455555 99999999998643
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=63.58 E-value=6.9 Score=35.49 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHcCCCHHHHHHHHhh-hCCcchh---HHHHHHh--hhhHHHHhcCcchh
Q 022450 145 AKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSFL 189 (297)
Q Consensus 145 ~~~g~I~~~~L~rfl~L-~asp~~l---~~L~r~f--~gfR~RlLADP~Fl 189 (297)
++.|.|+++.+.++.+. +..-.|. +-+-|++ +.||.|||+||.=.
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aA 87 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETV 87 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHH
Confidence 56788899999999986 4432332 3455555 99999999998644
No 3
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=43.84 E-value=5.1 Score=32.59 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=4.9
Q ss_pred ceeccCCCCcc
Q 022450 58 KTIEIPGKITE 68 (297)
Q Consensus 58 ~t~~i~G~~~~ 68 (297)
.+|.|....+.
T Consensus 82 ~sL~I~~lq~~ 92 (149)
T 3u6r_H 82 AYMELSSLRSE 92 (149)
T ss_dssp EEEEECSCCGG
T ss_pred EEEEECCCChh
Confidence 44555544333
No 4
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=43.29 E-value=13 Score=33.50 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHcCCCHHHHHHHHh-hhCCcchh---HHHHHHh--hhhHHHHhcCcc
Q 022450 145 AKTVGIRKMFLLRYLD-LQGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (297)
Q Consensus 145 ~~~g~I~~~~L~rfl~-L~asp~~l---~~L~r~f--~gfR~RlLADP~ 187 (297)
++.|.|+++.+..|.+ ++..-.|. +.+.|++ +.||+|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 4568899999999988 34332222 4555656 899999999974
No 5
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=42.50 E-value=15 Score=33.81 Aligned_cols=45 Identities=11% Similarity=-0.037 Sum_probs=32.2
Q ss_pred HHHHcCCCHHHHHHHHhhhCCcchh---HHHHHHh--hhhHHHHhcCcch
Q 022450 144 AAKTVGIRKMFLLRYLDLQGSVWPL---GFLMRYC--FMLRDRMLADPSF 188 (297)
Q Consensus 144 A~~~g~I~~~~L~rfl~L~asp~~l---~~L~r~f--~gfR~RlLADP~F 188 (297)
.++.|.|+++.+.++.+.-....|. +.+.|++ +.||.|||+|..=
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~a 87 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVE 87 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChHH
Confidence 4577888999999988853222333 4555666 8999999999654
No 6
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=39.24 E-value=19 Score=32.39 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=32.6
Q ss_pred HHHcCCCHHHHHHHHhhhCCc-chh---HHHHHHh--hhhHHHHhcCcchhH
Q 022450 145 AKTVGIRKMFLLRYLDLQGSV-WPL---GFLMRYC--FMLRDRMLADPSFLF 190 (297)
Q Consensus 145 ~~~g~I~~~~L~rfl~L~asp-~~l---~~L~r~f--~gfR~RlLADP~Flf 190 (297)
++.|.|+++.+.++.+.-.+. .|. +.+.|++ +.||.|||+|+.=..
T Consensus 28 ~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aA~ 79 (203)
T 1ugp_A 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEAC 79 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHHHH
Confidence 567888999999998863322 232 3445555 999999999976543
No 7
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=38.33 E-value=12 Score=33.82 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=31.6
Q ss_pred HHHHcCCCHHHHHHHHhhh-CCcchh---HHHHHHh--hhhHHHHhcCcchh
Q 022450 144 AAKTVGIRKMFLLRYLDLQ-GSVWPL---GFLMRYC--FMLRDRMLADPSFL 189 (297)
Q Consensus 144 A~~~g~I~~~~L~rfl~L~-asp~~l---~~L~r~f--~gfR~RlLADP~Fl 189 (297)
.++.|.|+++.+.++.+.- ....|. +-+.|++ +.||.|||+|+.=.
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~aA 81 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAA 81 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHHH
Confidence 3566788999888888853 331222 3455555 89999999997543
No 8
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=34.00 E-value=9.5 Score=35.56 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=4.3
Q ss_pred HHHHHHHHc
Q 022450 140 DMMEAAKTV 148 (297)
Q Consensus 140 Dl~~A~~~g 148 (297)
||.+||..|
T Consensus 220 ~Ll~air~g 228 (279)
T 3p8c_D 220 VLLEAIRKG 228 (279)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 455555433
No 9
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.96 E-value=2.4e+02 Score=20.60 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhhhCCcchhHHHHHH-hhhhHHHHhcCcc---hhHHHhHHhhh
Q 022450 123 FEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY-CFMLRDRMLADPS---FLFKVGTEIVI 198 (297)
Q Consensus 123 ~~~Vl~ea~rr~~sLPaDl~~A~~~g~I~~~~L~rfl~L~asp~~l~~L~r~-f~gfR~RlLADP~---FlfKl~iE~~I 198 (297)
+++|++........ |-.+.+-++.-++++..|.|.|.-...-.|..|+.+. +..-+ ++|.+.. =+..++.+++.
T Consensus 4 i~~~~~~i~~~~~~-~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~-~lL~~~~~~~si~~IA~~~Gf 81 (108)
T 3mn2_A 4 VRQVEEYIEANWMR-PITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAH-NLLSDGATPTTVTAAALSCGF 81 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHH-HHHHSSSSCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHcccC-CCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHcCCCCCCHHHHHHHhCC
Confidence 34555555555433 3455566677789999999999988666666665441 12223 4555544 45667766665
Q ss_pred hhhh
Q 022450 199 DSCC 202 (297)
Q Consensus 199 ~i~~ 202 (297)
.-..
T Consensus 82 ~~~s 85 (108)
T 3mn2_A 82 SNLG 85 (108)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 5333
No 10
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.48 E-value=24 Score=32.12 Aligned_cols=7 Identities=14% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCcccc
Q 022450 110 NDGEEKE 116 (297)
Q Consensus 110 ~d~~~~e 116 (297)
|+..|-|
T Consensus 221 dp~~dpe 227 (268)
T 4b4t_W 221 DPSMDPE 227 (268)
T ss_dssp -------
T ss_pred CCCCCHH
Confidence 4555544
No 11
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=20.57 E-value=2.8e+02 Score=21.00 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHh
Q 022450 124 EEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLD 160 (297)
Q Consensus 124 ~~Vl~ea~rr~~sLPaDl~~A~~~g~I~~~~L~rfl~ 160 (297)
++.++...+++-+ .-|.+.++..+|++..+-+||.
T Consensus 16 ~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 16 EAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcC
Confidence 4445555566666 5567777777899888888875
Done!