Query 022450
Match_columns 297
No_of_seqs 108 out of 129
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 05:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022450.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022450hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v29a_ d.149.1.1 (A:) Cobalt- 70.0 2 0.00015 36.5 4.3 44 144-187 26-75 (203)
2 d1ugpa_ d.149.1.1 (A:) Cobalt- 67.0 2.1 0.00015 36.4 3.8 69 124-198 10-84 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 55.0 2.7 0.0002 35.5 2.3 44 145-188 22-71 (197)
4 d1x3zb1 a.189.1.1 (B:253-309) 40.6 4.1 0.0003 28.0 0.9 29 168-196 28-56 (57)
5 d1b0na1 a.34.1.1 (A:74-108) Si 29.0 15 0.0011 22.9 2.2 22 141-163 9-30 (35)
6 d2c5ra1 a.251.1.1 (A:66-129) E 17.0 65 0.0047 22.2 3.7 43 124-166 7-50 (64)
7 d1r4wa_ c.47.1.13 (A:) Mitocho 15.1 1.1E+02 0.0077 22.6 5.0 84 124-222 118-205 (221)
8 d1lnza1 b.117.1.1 (A:1-157) Ob 14.4 52 0.0038 25.7 3.0 10 79-88 10-19 (157)
9 d1riqa1 a.203.1.1 (A:237-457) 14.1 35 0.0026 28.2 1.9 78 144-230 43-124 (221)
10 d1udxa1 b.117.1.1 (A:1-156) Ob 13.8 51 0.0037 25.8 2.8 13 77-89 8-20 (156)
No 1
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=69.98 E-value=2 Score=36.49 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=33.1
Q ss_pred HHHHcCCCHHHHHHHHhh-hCCcchh---HHHHHHh--hhhHHHHhcCcc
Q 022450 144 AAKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (297)
Q Consensus 144 A~~~g~I~~~~L~rfl~L-~asp~~l---~~L~r~f--~gfR~RlLADP~ 187 (297)
.++.|.|+++.+.+.++. +..-.|. +-+.|++ +.||.|||+|+.
T Consensus 26 LieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 26 LIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPE 75 (203)
T ss_dssp HHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 467889999999999984 4432333 4566666 999999999964
No 2
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=67.04 E-value=2.1 Score=36.42 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhh-hCCcchh---HHHHHHh--hhhHHHHhcCcchhHHHhHHhh
Q 022450 124 EEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSFLFKVGTEIV 197 (297)
Q Consensus 124 ~~Vl~ea~rr~~sLPaDl~~A~~~g~I~~~~L~rfl~L-~asp~~l---~~L~r~f--~gfR~RlLADP~FlfKl~iE~~ 197 (297)
++.-.+...|...|=.= .++.|.|+++.+.++++. +....|. +-+.|++ +.||.|||+|+. +.+-|.+
T Consensus 10 e~~~~~~~~RvkAle~l---LieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~---aA~~e~G 83 (203)
T d1ugpa_ 10 EEIQKEITARVKALESM---LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT---EACKELG 83 (203)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH---HHHHTTT
T ss_pred hhccccHHHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHH---HHHHHcC
Confidence 44455555555444332 357889999999999995 3332233 4566666 999999999974 4444444
Q ss_pred h
Q 022450 198 I 198 (297)
Q Consensus 198 I 198 (297)
+
T Consensus 84 ~ 84 (203)
T d1ugpa_ 84 I 84 (203)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=55.01 E-value=2.7 Score=35.53 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=32.2
Q ss_pred HHHcCCCHHHHHHHHhh-hCCcchh---HHHHHHh--hhhHHHHhcCcch
Q 022450 145 AKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSF 188 (297)
Q Consensus 145 ~~~g~I~~~~L~rfl~L-~asp~~l---~~L~r~f--~gfR~RlLADP~F 188 (297)
++.|.|+++.+.+.++. +..-.|. +.+.|++ +.||.|||+|+.=
T Consensus 22 ieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~a 71 (197)
T d2qdya1 22 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTA 71 (197)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35688899999999984 5543333 4555666 8999999999753
No 4
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.59 E-value=4.1 Score=28.02 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=23.2
Q ss_pred hHHHHHHhhhhHHHHhcCcchhHHHhHHh
Q 022450 168 LGFLMRYCFMLRDRMLADPSFLFKVGTEI 196 (297)
Q Consensus 168 l~~L~r~f~gfR~RlLADP~FlfKl~iE~ 196 (297)
+--++.+++-+|+.+++||.-...+..|-
T Consensus 28 le~ls~ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 28 LENISARYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp HHHHHTTCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHhCHHHHHHHHHhh
Confidence 34566667999999999999887777764
No 5
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=29.01 E-value=15 Score=22.95 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhhhC
Q 022450 141 MMEAAKTVGIRKMFLLRYLDLQG 163 (297)
Q Consensus 141 l~~A~~~g~I~~~~L~rfl~L~a 163 (297)
.++|.. -+||+++...||+.++
T Consensus 9 VkeAM~-SGvSK~QFrEflef~k 30 (35)
T d1b0na1 9 VRDAMT-SGVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHH-SCCCHHHHHHHHHHHH
T ss_pred HHHHHH-ccCCHHHHHHHHHHHH
Confidence 345654 4599999999999874
No 6
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=17.04 E-value=65 Score=22.20 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHcCC-CHHHHHHHHhhhCCcc
Q 022450 124 EEVMKEIELKGVGLPDDMMEAAKTVGI-RKMFLLRYLDLQGSVW 166 (297)
Q Consensus 124 ~~Vl~ea~rr~~sLPaDl~~A~~~g~I-~~~~L~rfl~L~asp~ 166 (297)
-+||.+-+++.-.+|.|+.+-+---.+ ++..+..|.+-+-.-|
T Consensus 7 ~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~W 50 (64)
T d2c5ra1 7 VAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYW 50 (64)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCcHHHHHHHHHhhhhhHHHHHHHHHhhHhHH
Confidence 468999999999999999998877777 6777888887764333
No 7
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.08 E-value=1.1e+02 Score=22.57 Aligned_cols=84 Identities=12% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCC--hHHHHHHHHHcCCCHHHHHHHHhhhCCcchhHHHHHHhhhhHHHHhcCcchhHHHhHHhhhhhh
Q 022450 124 EEVMKEIELKGVGL--PDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSC 201 (297)
Q Consensus 124 ~~Vl~ea~rr~~sL--PaDl~~A~~~g~I~~~~L~rfl~L~asp~~l~~L~r~f~gfR~RlLADP~FlfKl~iE~~I~i~ 201 (297)
+++++..-..+.++ +..+.++++.-++....+..+++...+ ..+|+++.++ .+-+++.+|.-+
T Consensus 118 ~~l~~a~~~~g~di~d~~~l~~~a~~~gl~~~~~~~~~~~~~~-----------~~~k~~l~~~----~~~A~~~GvfGv 182 (221)
T d1r4wa_ 118 RELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKIST-----------ELVKSKLRET----TGAACKYGAFGL 182 (221)
T ss_dssp HHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTS-----------HHHHHHHHHH----HHHHHHTTCCSS
T ss_pred HHHHHHHhccCCcccchHHHHHHHHHhCccccccccccccccC-----------HHHHHHHHHH----HHHHHHCCCeEC
Confidence 55666666777655 788999999999999888888765543 3456666665 455556555433
Q ss_pred hhhhhhHhhccccch--hHHHHH
Q 022450 202 CATLAEFQKRGKDFW--SEFELY 222 (297)
Q Consensus 202 ~~~~aE~~kRge~F~--~ElDfV 222 (297)
=+.+..=..+.|-|| +=++++
T Consensus 183 Ptfvi~~~~~~e~f~G~Drl~~l 205 (221)
T d1r4wa_ 183 PTTVAHVDGKTYMLFGSDRMELL 205 (221)
T ss_dssp CEEEEEETTEEEEEESTTCHHHH
T ss_pred CEEEEccCCCcceeecccCHHHH
Confidence 334443233455677 457664
No 8
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=14.35 E-value=52 Score=25.74 Aligned_cols=10 Identities=60% Similarity=1.116 Sum_probs=6.1
Q ss_pred cCCCCCCCCC
Q 022450 79 SSGGDGGAGD 88 (297)
Q Consensus 79 ~~~g~g~~g~ 88 (297)
=.+|.||+|.
T Consensus 10 v~aG~GG~G~ 19 (157)
T d1lnza1 10 VKGGDGGNGM 19 (157)
T ss_dssp EECCCCCCCC
T ss_pred EEECCCCCcc
Confidence 3457777764
No 9
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=14.09 E-value=35 Score=28.16 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=50.3
Q ss_pred HHHHcCCCHHHHHHHHhhhCCcchhHHHHHHhhhhHHHHhcCcchhHHHhHHhhhhhhhhhhhhHhhccccchh----HH
Q 022450 144 AAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWS----EF 219 (297)
Q Consensus 144 A~~~g~I~~~~L~rfl~L~asp~~l~~L~r~f~gfR~RlLADP~FlfKl~iE~~I~i~~~~~aE~~kRge~F~~----El 219 (297)
++.+|-+++- +++.|++|-++|+---.-.+|-.+..||++++ +.+|..-....-|+.++.+...+ |=
T Consensus 43 ~i~DGv~PsN--------~grGYvlRriiRRa~r~~~~lg~~~~~l~~lv-~~v~~~~~~~ypel~~~~~~I~~ii~~EE 113 (221)
T d1riqa1 43 AISDGVIPSN--------EGRGYVIRRILRRAMRFGYKLGIENPFLYKGV-DLVVDIMKEPYPELELSREFVKGIVKGEE 113 (221)
T ss_dssp HHHTTCCCCS--------SHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH-HHHHHHHTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCc--------CCCchHHHHHHHHHHHHHHHhccccchhhhhH-HHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 4555655533 23346677777743223356777888999976 88888888888888888776544 55
Q ss_pred HHHHHHHHHHH
Q 022450 220 ELYLADLLVGL 230 (297)
Q Consensus 220 DfV~adlv~g~ 230 (297)
+-+..++-.|.
T Consensus 114 ~~f~~tl~~G~ 124 (221)
T d1riqa1 114 KRFIKTLKAGM 124 (221)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 10
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.83 E-value=51 Score=25.77 Aligned_cols=13 Identities=38% Similarity=0.739 Sum_probs=7.7
Q ss_pred cccCCCCCCCCCC
Q 022450 77 IHSSGGDGGAGDS 89 (297)
Q Consensus 77 i~~~~g~g~~g~~ 89 (297)
|.=.+|+||+|.-
T Consensus 8 i~v~~G~GG~G~~ 20 (156)
T d1udxa1 8 ITVAAGRGGDGAV 20 (156)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEecCCCCCce
Confidence 3334677777754
Done!