BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022451
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 153/231 (66%), Gaps = 5/231 (2%)
Query: 46 LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
+ ++ +G+T +QD L ++K FGK L++D +QS E DE+IYHE+LVHPA+L HP PK
Sbjct: 21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVIND 164
+ I+GGGEG+T RE+L+H TVEK VM DID E+VE K ++ ++ AF DPR LVI+D
Sbjct: 81 VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
ARA LE +E YDV+I DL DP+ E P LYT FY +VK LNP G+ QAG
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAGMI- 198
Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS-IYNPHSHS 273
+ +H V ++ T+R+ F+YV Y HIP F +G+++ S ++P + S
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFS 249
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 152/231 (65%), Gaps = 5/231 (2%)
Query: 46 LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
+ ++ +G+T +QD L ++K FGK L++D +QS E DE+IYHE+LVHPA+L HP PK
Sbjct: 21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVIND 164
+ I+GGGEG+T RE+L+H TVEK VM DID E+VE K ++ ++ AF DPR LVI+D
Sbjct: 81 VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
ARA LE +E YDV+I DL DP+ E P LYT FY +VK LNP G+ Q G
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQTGMI- 198
Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS-IYNPHSHS 273
+ +H V ++ T+R+ F+YV Y HIP F +G+++ S ++P + S
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFS 249
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 10/252 (3%)
Query: 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFI 87
K W+E + + FA++++L+ +T +QD+ + + FG+ + +DG +Q+ E DEFI
Sbjct: 10 KKQWHET-LHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 68
Query: 88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
YHE + H LL H + K + I+GGG+G+ RE+ RHK VE + M +ID VV FC+ YL
Sbjct: 69 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128
Query: 148 V-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206
N ++ DPR +LVI+D + +++DVII D DPI GP L+T +FYE K
Sbjct: 129 NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYE-GCK 185
Query: 207 PRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSI 266
LNP GIFV Q G + + S + L F V Y A IP++ +G IM
Sbjct: 186 RCLNPGGIFVAQNGVCFLQQEEAIDS--HRKLSHYFSDVGFYQAAIPTY---YGGIMTFA 240
Query: 267 YNPHSHSILSLS 278
+ + ++ LS
Sbjct: 241 WATDNDALRHLS 252
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 130/230 (56%), Gaps = 8/230 (3%)
Query: 43 SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
S + +L G++ YQD+ + + +GK LV+DG +Q E DE Y E + H L PN
Sbjct: 61 SLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPN 120
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
PK + ++GGG+G RE+ RH ++E++ C+ID+ VV+ K + + DPR+ LVI
Sbjct: 121 PKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNLVI 180
Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
D A L++ E SYD +I D +DPI GP +L+ K F++ V + L P G+ TQA
Sbjct: 181 GDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQA-- 235
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADTWGWIMVSIYNP 269
++ H ++ I + R++FK V Y+ +P++ + G+ + S P
Sbjct: 236 ESLWLHXDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFXLCSTEGP 285
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 132/226 (58%), Gaps = 5/226 (2%)
Query: 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
WY E+ +N + +N LHT +T +Q + +++T+ FG L +DG + ++E DEF+YH
Sbjct: 3 LWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYH 62
Query: 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
E + H L HPNP+ + ++GGG+G REIL+H +V+K + DID +V+E+ K +L
Sbjct: 63 EMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI 122
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
DPR+++ ++D + + YDVI+ D +P+ GP L+TK FY + K L
Sbjct: 123 AGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-AL 179
Query: 210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255
+GIFV Q + E+ + + ++++F Y+A+IP++
Sbjct: 180 KEDGIFVAQTD--NPWFTPELITNVQRDVKEIFPITKLYTANIPTY 223
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 13/227 (5%)
Query: 43 SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
+F + ++ ++YQ I + +T+ FG+ L +DG +Q + E YHE LVHPA+L HP
Sbjct: 16 AFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPK 75
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK---EAFSDPRLE 159
PK + ++GGG+G T RE+L+H V++V+M +IDE+V+ K + ++ EA + + E
Sbjct: 76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHE 134
Query: 160 ---LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
L I D E +DVII D DP+ GP L+++ FY +V NP GI+V
Sbjct: 135 KAKLTIGDG-FEFIKNNRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNP-GIYV 190
Query: 217 TQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIM 263
TQAG +F+ E+ S Y +++VF V YS + +A W +++
Sbjct: 191 TQAGSVYLFT-DELISA-YKEMKKVFDRVYYYSFPVIGYASPWAFLV 235
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 135/264 (51%), Gaps = 7/264 (2%)
Query: 11 SQANGADAKNVALTGYRKSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPF 68
S G D + + W+ E + S + +LH +RYQDI + +K +
Sbjct: 2 SMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEK 128
G LV+DG +Q E DEF Y E + + L HPNP+ + I+GGG+G RE+++H +VE
Sbjct: 62 GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188
VV C+IDE+V++ K +L +S +L L + D ++ ++++DVII D +DP+
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM- 180
Query: 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248
GP L+ +S+Y+ ++K L +G+ Q + H ++ + + +F V
Sbjct: 181 -GPAESLFKESYYQ-LMKTALKEDGVLCCQGECQWL--HLDLIKEMRQFCQSLFPVVAYA 236
Query: 249 SAHIPSFADTWGWIMVSIYNPHSH 272
IP++ M+ NP ++
Sbjct: 237 YCTIPTYPSGQIGFMLCSKNPSTN 260
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 7/260 (2%)
Query: 15 GADAKNVALTGYRKSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKAL 72
G D + + W+ E + S + +LH +RYQDI + +K +G L
Sbjct: 6 GPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVL 65
Query: 73 VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132
V+DG +Q E DEF Y E + + L HPNP+ + I+GGG+G RE+++H +VE VV C
Sbjct: 66 VLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQC 125
Query: 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPC 192
+IDE+V++ K +L +S +L L + D ++ ++++DVII D +DP+ GP
Sbjct: 126 EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPA 183
Query: 193 YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHI 252
L+ +S+Y+ ++K L +G+ Q + H ++ + + +F V I
Sbjct: 184 ESLFKESYYQ-LMKTALKEDGVLCCQGECQWL--HLDLIKEMRQFCQSLFPVVAYAYCTI 240
Query: 253 PSFADTWGWIMVSIYNPHSH 272
P++ M+ NP ++
Sbjct: 241 PTYPSGQIGFMLCSKNPSTN 260
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 6/241 (2%)
Query: 27 RKSCWY-EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
R+ WY E N+ +N ++++G++ Q I + + G +DG + E DE
Sbjct: 14 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 73
Query: 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
F+YHE L H + HPNPK + I+GGG+G T RE+L+H +VEK ++C++D V+E + Y
Sbjct: 74 FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 133
Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
L F DPR E+VI + + K +DVII D DP G + L+T+ FY+
Sbjct: 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGH-LFTEEFYQ-AC 191
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMV 264
L +G+F + F F Y + +VF Y + ++ + W +
Sbjct: 192 YDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 249
Query: 265 S 265
S
Sbjct: 250 S 250
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 130 bits (327), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 135/247 (54%), Gaps = 17/247 (6%)
Query: 42 WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
+S + +L +++YQD+ + ++ +G LV+DG +Q+ E DEF Y E L H + HP
Sbjct: 48 FSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHP 107
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
+PK + I+GGG+G RE+L+H++VEKV MC+IDE V++ K +L FS P+L+L
Sbjct: 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF 167
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
D L++ K +DVII D +DP+ GP L+ +S+YE +++ L +GI +Q
Sbjct: 168 CGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQG-- 222
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPHSHSILSLSYFE 281
++ H + + + R++F V T+ +VS Y S L +
Sbjct: 223 ESVWLHLPLIAHLVAFNRKIFPAV------------TYAQSIVSTYPSGSMGYLICAKNA 270
Query: 282 NLDSSRP 288
N D + P
Sbjct: 271 NRDVTTP 277
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 31 WYEEEIEENLRW-----SFALNSILHTGETRYQDIALLDTKP---FGKALVIDGKLQSAE 82
W+ EE N +W S + +L+ T++Q + + ++ P +G +DG +Q +
Sbjct: 19 WFREE---NDQWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTD 75
Query: 83 VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
DEF+YHE L H +L HP P+ + I+GGG+G RE+LRH TVE + DID EV E
Sbjct: 76 YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQS 135
Query: 143 KSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFY 201
K + + +DPR + + D A + ++ +YDV+I D DP GP KL+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDP--AGPASKLFGEAFY 193
Query: 202 EFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF 255
+ V++ L P+GI Q I+ E+ +R+ V Y+ H+P++
Sbjct: 194 KDVLR-ILKPDGICCNQG--ESIWLDLELIEKXSRFIRETGFASVQYALXHVPTY 245
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 42 WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
+S + IL+ +++YQ++ + ++ +GK LV+DG +Q E DEF YHE + H +
Sbjct: 18 FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 77
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
PK + ++GGG+G RE+ ++K+VE + +C+IDE V+E K Y + D R+ +
Sbjct: 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 137
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
I DA LE+ +YDVII D +DPI GP L+ ++FYE + L P G V Q
Sbjct: 138 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 192
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255
++ H + +++FK V + IP++
Sbjct: 193 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 226
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 42 WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
+S + IL+ +++YQ++ + ++ +GK LV+DG +Q E DEF YHE + H +
Sbjct: 17 FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 76
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
PK + ++GGG+G RE+ ++K+VE + +C+IDE V+E K Y + D R+ +
Sbjct: 77 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 136
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
I DA LE+ +YDVII D +DPI GP L+ ++FYE + L P G V Q
Sbjct: 137 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 191
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255
++ H + +++FK V + IP++
Sbjct: 192 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 225
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 42 WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
+S + IL+ +++YQ++ + ++ +GK LV+DG +Q E DEF YHE + H +
Sbjct: 56 FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 115
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
PK + ++GGG+G RE+ ++K+VE + +C+IDE V+E K Y + D R+ +
Sbjct: 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 175
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
I DA LE+ +YDVII D +DPI GP L+ ++FYE + L P G V Q
Sbjct: 176 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 230
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255
++ H + +++FK V + IP++
Sbjct: 231 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 264
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 12/227 (5%)
Query: 43 SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
+F + + ++ YQ I + +T+ FGK L IDG +Q E YHE LVHPA+L HPN
Sbjct: 17 AFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPN 76
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDP-- 156
P+ + I+GGG+G RE+L+H+ VE+V+M +ID++V+E Y+ ++ ++ SD
Sbjct: 77 PRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLSDKHE 136
Query: 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
+ +L+I D +E +DVII D DP+ GP L+++ FY+ + LN GI+V
Sbjct: 137 KGKLIIGDGVKFIEEN-SGFDVIIVDSTDPV--GPAEMLFSEEFYKNAYRA-LNDPGIYV 192
Query: 217 TQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIM 263
TQAG +F T+ F Y +R+VF V YS + +A W +++
Sbjct: 193 TQAGSVYLF--TDEFLTAYRKMRKVFDKVYYYSFPVIGYASPWAFLV 237
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 44 FALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNP 103
+ ++ +++ ++ YQ+I +L +K FG L++ G + AE D Y +++ +
Sbjct: 149 YDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKEDYTG- 206
Query: 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDPRLE 159
K + I+GGG+G EI++ K + V M +ID+ V++ CK Y+ + +
Sbjct: 207 KDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQ 265
Query: 160 LVINDA-----RAELESRKESYDVIIGDL-ADPIEGGPCYKLYTKSFYEF------VVKP 207
++I D R E R+ +D +I DL A PI P S +EF +
Sbjct: 266 VLIEDCIPVLKRYAKEGRE--FDYVINDLTAVPISTSP----EEDSTWEFLRLILDLSMK 319
Query: 208 RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHI---PSFADTW 259
L +G + TQ + TE S L +++ V +S I PS+ + W
Sbjct: 320 VLKQDGKYFTQGNCVNL---TEALSLYEEQLGRLY-CPVEFSKEIVCVPSYLELW 370
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164
T+ +GGG G+ + +L+H ++K+ + ++D E+VE KS D RLE++ D
Sbjct: 34 TVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKS--------IGDERLEVINED 84
Query: 165 A 165
A
Sbjct: 85 A 85
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164
T+ +GGG G+ + +L+H ++K+ + ++D E+VE KS D RLE++ D
Sbjct: 33 TVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKS--------IGDERLEVINED 83
Query: 165 A 165
A
Sbjct: 84 A 84
>pdb|1W9R|A Chain A, Solution Structure Of Choline Binding Protein A, Domain
R2, The Major Adhesin Of Streptococcus Pneumoniae
Length = 119
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK 173
K + +I E VE K+ L + KE +PR E + A+AE+ES+K
Sbjct: 40 KTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKK 85
>pdb|3IJI|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJI|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJL|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Pro-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJL|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Pro-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJQ|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
Substrate Binding.
pdb|3IJQ|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
Substrate Binding
Length = 338
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 136 EEVVEFCKSYLVVNKEAFSDP-RLELV---INDARAELESRKESYDVIIGDLADPIEGGP 191
E V+ F K VN E FSDP +LE + ++ + + K + D+ + DL + G P
Sbjct: 55 ESVMNFLKK---VNLEQFSDPFQLEDILSYVDSLSPKDTAAKAAVDIALHDLVGKLLGAP 111
Query: 192 CYKLY 196
YK++
Sbjct: 112 WYKIW 116
>pdb|3AFC|A Chain A, Mouse Semaphorin 6a Extracellular Domain
pdb|3AFC|B Chain B, Mouse Semaphorin 6a Extracellular Domain
pdb|3AL8|A Chain A, Plexin A2 SEMAPHORIN 6A COMPLEX
Length = 556
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 64 DTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
D K AL DGKL SA V +F+ +++++ +L P +T+
Sbjct: 154 DAKHANIALFADGKLYSATVTDFLAIDAVIYRSLGDSPTLRTV 196
>pdb|3OKW|A Chain A, Mouse Semaphorin 6a, Extracellular Domains 1-2
pdb|3OKW|B Chain B, Mouse Semaphorin 6a, Extracellular Domains 1-2
pdb|3OKY|B Chain B, Plexin A2 In Complex With Semaphorin 6a
Length = 565
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 64 DTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
D K AL DGKL SA V +F+ +++++ +L P +T+
Sbjct: 153 DAKHANIALFADGKLYSATVTDFLAIDAVIYRSLGDSPTLRTV 195
>pdb|2CMG|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMG|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|C Chain C, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
Length = 262
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 115/284 (40%), Gaps = 50/284 (17%)
Query: 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
W +EI LR + + + L + + + + +K FG+ +++ +L F++
Sbjct: 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQLL---FKNFLHI 57
Query: 90 ES--LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCD---IDEEVVEFCKS 144
ES L H K + I+ G + A ++ ++ T V D +D + F
Sbjct: 58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHF 117
Query: 145 YLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP----IEGGPCYKLYTKSF 200
+ V N + F+ A+ L+ + YD+I L +P I+G
Sbjct: 118 HEVKNNKNFT---------HAKQLLDLDIKKYDLIFC-LQEPDIHRIDG----------- 156
Query: 201 YEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWG 260
+K L +G+F++ A + H + + + N + VF +P+ A + ++ G
Sbjct: 157 ----LKRMLKEDGVFISVAKHP-LLEHVSMQNALKN-MGGVFSVAMPFVAPLRILSNK-G 209
Query: 261 WIMVS--------IYNPHSHSILSLSYFENLDSSRPNSFTSPIN 296
+I S + P ++ S+ Y+ N D R +F P N
Sbjct: 210 YIYASFKTHPLKDLMTPKIEALTSVRYY-NEDIHRA-AFALPKN 251
>pdb|3PWU|A Chain A, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule
N01801(Bola-A11)
pdb|3PWV|A Chain A, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801
(Bola-A11)
pdb|3PWV|D Chain D, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801
(Bola-A11)
Length = 274
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 29/85 (34%)
Query: 30 CW----YEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQ------ 79
CW Y EEI +L W H GE + QD+ L++T+P G DG Q
Sbjct: 202 CWALGFYPEEI--SLTWQ-------HEGEDQTQDMELVETRPSG-----DGTFQKWAALV 247
Query: 80 --SAEVDEF---IYHESLVHPALLH 99
S E + + HE L P L
Sbjct: 248 VPSGEEQRYTCRVQHEGLQEPLTLR 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,472,462
Number of Sequences: 62578
Number of extensions: 402687
Number of successful extensions: 954
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 40
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)