Query 022451
Match_columns 297
No_of_seqs 241 out of 2588
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02823 spermine synthase 100.0 7.7E-50 1.7E-54 371.4 27.1 266 3-269 3-270 (336)
2 PF01564 Spermine_synth: Sperm 100.0 3.5E-48 7.5E-53 347.4 24.8 236 30-270 1-241 (246)
3 PLN02366 spermidine synthase 100.0 1.2E-47 2.6E-52 353.3 25.6 238 26-268 13-255 (308)
4 PRK00811 spermidine synthase; 100.0 1.3E-47 2.9E-52 350.6 24.9 263 28-297 2-268 (283)
5 PRK00536 speE spermidine synth 100.0 1.1E-47 2.4E-52 344.6 20.5 242 30-297 1-242 (262)
6 COG0421 SpeE Spermidine syntha 100.0 1.7E-46 3.6E-51 340.6 22.8 261 28-296 2-265 (282)
7 TIGR00417 speE spermidine synt 100.0 1.2E-43 2.6E-48 322.6 24.5 232 31-267 1-233 (270)
8 PRK01581 speE spermidine synth 100.0 4.7E-43 1E-47 325.0 25.5 257 5-270 50-317 (374)
9 COG4262 Predicted spermidine s 100.0 5.9E-40 1.3E-44 298.2 16.7 236 38-279 226-464 (508)
10 PRK03612 spermidine synthase; 100.0 2.8E-38 6.2E-43 310.8 22.1 254 31-297 223-483 (521)
11 KOG1562 Spermidine synthase [A 100.0 4.4E-36 9.5E-41 266.9 10.4 269 24-297 38-317 (337)
12 PRK04457 spermidine synthase; 100.0 1.9E-27 4E-32 215.4 23.0 204 51-270 10-220 (262)
13 COG2521 Predicted archaeal met 99.7 1.1E-16 2.4E-21 139.0 13.2 170 70-246 102-274 (287)
14 PF12847 Methyltransf_18: Meth 99.6 1.1E-15 2.4E-20 119.9 8.5 110 102-219 1-111 (112)
15 PF13659 Methyltransf_26: Meth 99.5 6.8E-14 1.5E-18 110.6 10.0 111 104-219 2-115 (117)
16 COG4123 Predicted O-methyltran 99.5 8.7E-13 1.9E-17 117.4 18.0 136 97-243 39-188 (248)
17 PF05175 MTS: Methyltransferas 99.5 5.7E-14 1.2E-18 119.2 10.1 129 102-248 31-160 (170)
18 PRK00107 gidB 16S rRNA methylt 99.5 2.6E-12 5.6E-17 110.8 17.3 142 101-266 44-186 (187)
19 PRK00121 trmB tRNA (guanine-N( 99.5 1.2E-12 2.6E-17 114.2 14.9 130 101-241 39-172 (202)
20 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.2E-12 4.7E-17 111.8 14.8 130 101-241 15-148 (194)
21 PRK14966 unknown domain/N5-glu 99.4 8E-12 1.7E-16 119.0 19.5 190 54-265 208-417 (423)
22 PF01596 Methyltransf_3: O-met 99.4 2.3E-12 5E-17 112.6 13.0 105 101-218 44-154 (205)
23 COG4122 Predicted O-methyltran 99.4 8E-12 1.7E-16 109.6 15.6 106 100-218 57-165 (219)
24 PF13847 Methyltransf_31: Meth 99.4 6.6E-13 1.4E-17 110.3 8.3 107 101-219 2-110 (152)
25 PRK15128 23S rRNA m(5)C1962 me 99.4 8E-11 1.7E-15 112.6 23.6 116 101-222 219-342 (396)
26 TIGR00138 gidB 16S rRNA methyl 99.4 4.6E-12 9.9E-17 108.7 13.4 102 102-220 42-143 (181)
27 COG4106 Tam Trans-aconitate me 99.4 1.1E-12 2.5E-17 113.0 9.2 109 90-219 21-129 (257)
28 PLN02476 O-methyltransferase 99.4 1.2E-11 2.5E-16 112.5 16.3 106 100-218 116-227 (278)
29 PRK08287 cobalt-precorrin-6Y C 99.4 1.4E-11 3.1E-16 105.8 16.2 125 100-247 29-154 (187)
30 TIGR02469 CbiT precorrin-6Y C5 99.4 3.4E-12 7.4E-17 101.3 11.3 105 101-219 18-122 (124)
31 PRK15001 SAM-dependent 23S rib 99.4 5.8E-12 1.3E-16 119.4 14.2 131 103-247 229-359 (378)
32 KOG2352 Predicted spermine/spe 99.4 8.7E-13 1.9E-17 125.9 8.5 192 87-296 273-480 (482)
33 PRK00377 cbiT cobalt-precorrin 99.4 3.7E-11 8E-16 104.4 17.1 131 99-249 37-169 (198)
34 COG2242 CobL Precorrin-6B meth 99.4 2.1E-11 4.6E-16 103.6 14.9 125 97-243 29-153 (187)
35 TIGR03533 L3_gln_methyl protei 99.4 2.2E-11 4.8E-16 111.7 16.2 157 56-220 77-252 (284)
36 TIGR00536 hemK_fam HemK family 99.4 6.5E-11 1.4E-15 108.5 19.1 192 55-265 69-281 (284)
37 PLN02781 Probable caffeoyl-CoA 99.4 5.5E-12 1.2E-16 112.5 11.2 105 101-218 67-177 (234)
38 PRK09328 N5-glutamine S-adenos 99.4 7.1E-11 1.5E-15 107.2 18.6 176 69-264 77-273 (275)
39 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.8E-11 4E-16 115.8 14.9 130 101-241 121-251 (390)
40 COG2813 RsmC 16S RNA G1207 met 99.3 8.9E-12 1.9E-16 113.3 12.0 128 102-248 158-286 (300)
41 COG2519 GCD14 tRNA(1-methylade 99.3 1.4E-11 3E-16 109.2 12.8 128 99-249 91-220 (256)
42 PRK14103 trans-aconitate 2-met 99.3 5.8E-12 1.3E-16 113.5 10.7 100 100-219 27-126 (255)
43 COG2890 HemK Methylase of poly 99.3 7.6E-11 1.6E-15 107.9 17.7 155 54-220 66-239 (280)
44 PRK01544 bifunctional N5-gluta 99.3 6.3E-11 1.4E-15 116.8 18.0 192 54-267 69-307 (506)
45 PRK11805 N5-glutamine S-adenos 99.3 3.7E-11 8E-16 111.3 15.5 158 55-220 88-264 (307)
46 COG2226 UbiE Methylase involve 99.3 3.2E-11 6.9E-16 107.3 14.3 107 101-219 50-156 (238)
47 PRK11036 putative S-adenosyl-L 99.3 1.5E-11 3.3E-16 110.8 12.5 107 101-219 43-149 (255)
48 PRK09489 rsmC 16S ribosomal RN 99.3 3.1E-11 6.7E-16 113.4 14.5 127 102-248 196-323 (342)
49 PRK01683 trans-aconitate 2-met 99.3 1.2E-11 2.6E-16 111.4 11.1 101 101-219 30-130 (258)
50 TIGR03534 RF_mod_PrmC protein- 99.3 1.1E-10 2.3E-15 104.4 17.1 112 101-219 86-217 (251)
51 PRK07402 precorrin-6B methylas 99.3 9.8E-11 2.1E-15 101.4 16.1 104 101-219 39-142 (196)
52 TIGR03704 PrmC_rel_meth putati 99.3 6.4E-11 1.4E-15 106.8 15.3 124 102-240 86-230 (251)
53 PRK10909 rsmD 16S rRNA m(2)G96 99.3 1.4E-10 3.1E-15 100.8 16.8 145 59-219 12-159 (199)
54 PRK15451 tRNA cmo(5)U34 methyl 99.3 2.1E-11 4.5E-16 109.6 11.4 108 101-219 55-164 (247)
55 COG1092 Predicted SAM-dependen 99.3 9.4E-11 2E-15 111.2 16.2 115 102-222 217-339 (393)
56 TIGR00537 hemK_rel_arch HemK-r 99.3 7.7E-11 1.7E-15 100.6 13.9 124 101-241 18-156 (179)
57 PF01209 Ubie_methyltran: ubiE 99.3 8.5E-12 1.8E-16 111.2 7.6 108 100-219 45-153 (233)
58 TIGR02752 MenG_heptapren 2-hep 99.3 3.8E-11 8.3E-16 106.3 11.7 108 100-219 43-151 (231)
59 PF08241 Methyltransf_11: Meth 99.3 7.3E-12 1.6E-16 94.3 5.9 95 107-217 1-95 (95)
60 PLN02589 caffeoyl-CoA O-methyl 99.3 6.2E-11 1.3E-15 106.3 11.9 106 100-218 77-189 (247)
61 PRK00517 prmA ribosomal protei 99.3 5.5E-10 1.2E-14 100.6 18.1 161 70-266 88-249 (250)
62 PLN03075 nicotianamine synthas 99.3 1.7E-10 3.8E-15 105.5 15.0 109 101-219 122-233 (296)
63 PLN02233 ubiquinone biosynthes 99.2 4.1E-11 8.8E-16 108.6 10.7 110 101-219 72-182 (261)
64 PLN02672 methionine S-methyltr 99.2 2.7E-10 5.8E-15 119.6 18.2 171 69-251 86-305 (1082)
65 PF13649 Methyltransf_25: Meth 99.2 1.1E-11 2.3E-16 95.9 5.9 96 106-213 1-101 (101)
66 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.2E-10 2.7E-15 119.0 15.3 117 101-221 537-658 (702)
67 PLN02244 tocopherol O-methyltr 99.2 4.6E-11 9.9E-16 112.3 10.6 107 101-219 117-223 (340)
68 PF08704 GCD14: tRNA methyltra 99.2 7.5E-11 1.6E-15 105.6 11.3 132 97-249 35-171 (247)
69 PRK14967 putative methyltransf 99.2 6.1E-10 1.3E-14 98.5 16.7 110 101-219 35-159 (223)
70 TIGR00406 prmA ribosomal prote 99.2 5.1E-10 1.1E-14 102.9 16.7 121 101-244 158-278 (288)
71 PLN02396 hexaprenyldihydroxybe 99.2 5.9E-11 1.3E-15 110.5 10.1 105 102-219 131-235 (322)
72 COG2518 Pcm Protein-L-isoaspar 99.2 1.2E-10 2.6E-15 101.0 11.1 103 98-220 68-170 (209)
73 COG2227 UbiG 2-polyprenyl-3-me 99.2 4.5E-11 9.8E-16 105.2 8.5 103 101-219 58-161 (243)
74 PRK11188 rrmJ 23S rRNA methylt 99.2 1.7E-10 3.6E-15 101.3 12.2 127 101-249 50-189 (209)
75 PRK13944 protein-L-isoaspartat 99.2 1.1E-10 2.4E-15 102.0 11.0 102 101-219 71-173 (205)
76 TIGR00740 methyltransferase, p 99.2 1.6E-10 3.5E-15 103.1 12.2 108 101-219 52-161 (239)
77 TIGR00080 pimt protein-L-isoas 99.2 8.5E-11 1.8E-15 103.4 10.2 102 100-219 75-177 (215)
78 PRK04266 fibrillarin; Provisio 99.2 5.6E-10 1.2E-14 99.1 15.1 132 100-246 70-207 (226)
79 PRK14902 16S rRNA methyltransf 99.2 5.1E-10 1.1E-14 108.8 16.3 117 100-221 248-381 (444)
80 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.7E-09 3.8E-14 98.1 18.4 136 100-245 69-221 (264)
81 PRK13942 protein-L-isoaspartat 99.2 1.3E-10 2.7E-15 102.2 10.6 102 100-219 74-176 (212)
82 PF08242 Methyltransf_12: Meth 99.2 5E-12 1.1E-16 97.2 1.2 98 107-215 1-99 (99)
83 PRK11207 tellurite resistance 99.2 1.4E-10 3E-15 100.8 10.3 104 101-217 29-132 (197)
84 PF05401 NodS: Nodulation prot 99.2 5.4E-10 1.2E-14 95.9 13.5 134 99-250 40-180 (201)
85 PRK10258 biotin biosynthesis p 99.2 1.7E-10 3.7E-15 103.6 10.6 99 102-219 42-140 (251)
86 TIGR00438 rrmJ cell division p 99.2 4.7E-10 1E-14 96.5 12.8 126 101-248 31-169 (188)
87 smart00828 PKS_MT Methyltransf 99.2 9.8E-11 2.1E-15 103.2 8.7 104 104-219 1-104 (224)
88 PF10672 Methyltrans_SAM: S-ad 99.2 3.3E-10 7.1E-15 103.5 12.1 115 101-222 122-241 (286)
89 PF02390 Methyltransf_4: Putat 99.2 3.1E-10 6.7E-15 98.5 11.3 126 105-241 20-149 (195)
90 PRK10901 16S rRNA methyltransf 99.2 1.8E-09 4E-14 104.4 17.7 116 100-221 242-374 (427)
91 TIGR02072 BioC biotin biosynth 99.2 2.8E-10 6.1E-15 100.4 10.9 103 101-219 33-135 (240)
92 PRK14903 16S rRNA methyltransf 99.1 1.5E-09 3.2E-14 105.1 16.2 138 99-245 234-388 (431)
93 PTZ00098 phosphoethanolamine N 99.1 3.5E-10 7.5E-15 102.6 10.2 107 99-219 49-156 (263)
94 PRK11873 arsM arsenite S-adeno 99.1 5.1E-10 1.1E-14 101.7 11.3 106 101-218 76-182 (272)
95 COG0742 N6-adenine-specific me 99.1 2.7E-09 5.9E-14 91.2 14.7 148 60-220 2-155 (187)
96 PF02353 CMAS: Mycolic acid cy 99.1 3.3E-10 7.1E-15 103.3 9.6 106 100-219 60-166 (273)
97 PRK14904 16S rRNA methyltransf 99.1 2E-09 4.4E-14 104.7 15.6 134 100-244 248-398 (445)
98 PF06325 PrmA: Ribosomal prote 99.1 3.2E-10 6.9E-15 104.2 9.3 136 100-266 159-294 (295)
99 PHA03411 putative methyltransf 99.1 1.7E-09 3.6E-14 97.9 13.5 105 102-218 64-182 (279)
100 PRK14901 16S rRNA methyltransf 99.1 4.5E-09 9.7E-14 102.0 17.2 137 99-244 249-405 (434)
101 TIGR00477 tehB tellurite resis 99.1 6.1E-10 1.3E-14 96.6 10.1 103 101-217 29-131 (195)
102 PRK14968 putative methyltransf 99.1 5.1E-09 1.1E-13 89.3 15.1 111 101-219 22-148 (188)
103 PF03602 Cons_hypoth95: Conser 99.1 5.4E-10 1.2E-14 96.0 8.9 109 101-220 41-154 (183)
104 PTZ00146 fibrillarin; Provisio 99.1 4.5E-09 9.7E-14 96.0 15.2 152 100-268 130-288 (293)
105 PF01135 PCMT: Protein-L-isoas 99.1 4.7E-10 1E-14 98.3 8.4 103 100-220 70-173 (209)
106 TIGR00095 RNA methyltransferas 99.1 6.7E-09 1.5E-13 89.7 15.4 107 102-219 49-159 (189)
107 COG2230 Cfa Cyclopropane fatty 99.1 9E-10 1.9E-14 99.9 10.3 107 99-219 69-176 (283)
108 PLN02490 MPBQ/MSBQ methyltrans 99.1 9.1E-10 2E-14 103.1 10.4 132 101-247 112-254 (340)
109 PHA03412 putative methyltransf 99.1 1.7E-09 3.7E-14 95.8 11.6 103 102-217 49-160 (241)
110 PRK08317 hypothetical protein; 99.1 1.7E-09 3.7E-14 95.2 11.6 107 100-219 17-124 (241)
111 TIGR00563 rsmB ribosomal RNA s 99.0 7.5E-09 1.6E-13 100.2 16.8 138 99-244 235-389 (426)
112 PLN02336 phosphoethanolamine N 99.0 9.9E-10 2.2E-14 107.6 10.7 105 101-219 265-369 (475)
113 PRK00216 ubiE ubiquinone/menaq 99.0 1.6E-09 3.4E-14 95.7 11.0 107 101-218 50-157 (239)
114 COG2264 PrmA Ribosomal protein 99.0 2.8E-09 6.1E-14 97.5 12.7 123 101-245 161-284 (300)
115 TIGR01177 conserved hypothetic 99.0 1.4E-09 3E-14 101.8 11.0 112 100-219 180-294 (329)
116 KOG1270 Methyltransferases [Co 99.0 1.8E-10 3.8E-15 102.3 4.4 102 103-219 90-195 (282)
117 PRK12335 tellurite resistance 99.0 1.3E-09 2.7E-14 100.2 9.8 103 101-217 119-221 (287)
118 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2E-09 4.3E-14 94.1 10.7 106 100-219 37-143 (223)
119 PRK15068 tRNA mo(5)U34 methylt 99.0 2.8E-09 6E-14 99.5 11.6 106 101-219 121-226 (322)
120 COG0220 Predicted S-adenosylme 99.0 4.5E-09 9.7E-14 93.2 12.0 111 104-219 50-164 (227)
121 cd02440 AdoMet_MTases S-adenos 99.0 3.4E-09 7.4E-14 79.5 9.7 103 105-218 1-103 (107)
122 PRK00312 pcm protein-L-isoaspa 99.0 3E-09 6.5E-14 93.2 10.7 101 100-220 76-176 (212)
123 TIGR03587 Pse_Me-ase pseudamin 99.0 2.9E-09 6.3E-14 93.1 10.2 94 100-209 41-134 (204)
124 smart00650 rADc Ribosomal RNA 99.0 5.2E-09 1.1E-13 88.6 11.1 101 101-219 12-113 (169)
125 PRK06922 hypothetical protein; 99.0 3E-09 6.4E-14 106.1 10.7 112 102-219 418-537 (677)
126 PRK03522 rumB 23S rRNA methylu 99.0 7.6E-09 1.6E-13 96.3 12.8 104 102-221 173-276 (315)
127 PRK11705 cyclopropane fatty ac 99.0 3.8E-09 8.3E-14 100.8 10.9 101 101-219 166-267 (383)
128 PRK11088 rrmA 23S rRNA methylt 99.0 2.7E-09 5.9E-14 97.1 9.3 95 101-219 84-181 (272)
129 KOG1540 Ubiquinone biosynthesi 99.0 4.7E-09 1E-13 92.9 10.3 108 101-217 99-212 (296)
130 PRK13943 protein-L-isoaspartat 98.9 5.9E-09 1.3E-13 97.1 11.1 101 101-219 79-180 (322)
131 PRK05134 bifunctional 3-demeth 98.9 5.8E-09 1.3E-13 92.5 10.5 105 101-219 47-151 (233)
132 TIGR02085 meth_trns_rumB 23S r 98.9 1E-08 2.3E-13 97.6 12.8 103 102-220 233-335 (374)
133 TIGR00452 methyltransferase, p 98.9 7.8E-09 1.7E-13 96.0 11.5 106 101-219 120-225 (314)
134 KOG2899 Predicted methyltransf 98.9 5.1E-09 1.1E-13 92.0 9.6 111 102-218 58-208 (288)
135 TIGR02716 C20_methyl_CrtF C-20 98.9 6.2E-09 1.3E-13 96.3 10.7 107 101-219 148-254 (306)
136 TIGR01983 UbiG ubiquinone bios 98.9 8.7E-09 1.9E-13 90.6 10.6 106 101-219 44-149 (224)
137 PRK04338 N(2),N(2)-dimethylgua 98.9 8.6E-09 1.9E-13 98.2 11.1 101 103-219 58-158 (382)
138 KOG4300 Predicted methyltransf 98.9 5.1E-09 1.1E-13 90.0 8.3 106 102-219 76-182 (252)
139 PRK05785 hypothetical protein; 98.9 1.6E-08 3.5E-13 89.8 11.9 92 101-213 50-141 (226)
140 PRK13168 rumA 23S rRNA m(5)U19 98.9 5.4E-08 1.2E-12 94.7 16.5 104 101-221 296-402 (443)
141 TIGR03840 TMPT_Se_Te thiopurin 98.9 9.9E-09 2.2E-13 90.3 9.4 111 101-218 33-151 (213)
142 TIGR03438 probable methyltrans 98.9 2.8E-08 6E-13 92.0 12.7 112 101-220 62-178 (301)
143 TIGR00479 rumA 23S rRNA (uraci 98.9 4.3E-08 9.2E-13 95.0 14.4 103 101-219 291-396 (431)
144 KOG2904 Predicted methyltransf 98.9 1.5E-07 3.3E-12 84.2 16.1 117 100-220 146-286 (328)
145 PLN02336 phosphoethanolamine N 98.9 1.4E-08 3E-13 99.6 10.5 106 101-219 36-142 (475)
146 COG2263 Predicted RNA methylas 98.8 3.8E-08 8.2E-13 83.8 11.5 101 101-218 44-144 (198)
147 TIGR00308 TRM1 tRNA(guanine-26 98.8 2.6E-08 5.6E-13 94.6 11.7 101 104-219 46-147 (374)
148 TIGR02021 BchM-ChlM magnesium 98.8 2.8E-08 6.1E-13 87.4 10.8 102 101-217 54-156 (219)
149 PF03848 TehB: Tellurite resis 98.8 1.4E-08 3.1E-13 87.6 8.5 106 100-219 28-133 (192)
150 PF13489 Methyltransf_23: Meth 98.8 1E-08 2.3E-13 84.7 7.5 96 100-219 20-115 (161)
151 PRK05031 tRNA (uracil-5-)-meth 98.8 3E-07 6.6E-12 87.2 18.4 100 103-220 207-321 (362)
152 TIGR02143 trmA_only tRNA (urac 98.8 4.2E-07 9E-12 86.0 18.4 100 103-220 198-312 (353)
153 KOG1663 O-methyltransferase [S 98.8 3.1E-07 6.7E-12 80.5 15.9 149 101-266 72-236 (237)
154 KOG1271 Methyltransferases [Ge 98.8 7E-08 1.5E-12 81.6 11.1 114 101-221 66-183 (227)
155 PRK13255 thiopurine S-methyltr 98.8 2.8E-08 6.1E-13 87.8 8.7 109 101-216 36-152 (218)
156 smart00138 MeTrc Methyltransfe 98.8 1.8E-08 4E-13 91.5 7.6 112 102-219 99-242 (264)
157 PRK06202 hypothetical protein; 98.8 4.3E-08 9.4E-13 87.0 9.5 104 101-219 59-166 (232)
158 PRK07580 Mg-protoporphyrin IX 98.7 1.8E-07 4E-12 82.4 12.2 100 101-215 62-162 (230)
159 PF02475 Met_10: Met-10+ like- 98.7 2.7E-08 5.9E-13 86.6 6.4 100 101-216 100-199 (200)
160 KOG3010 Methyltransferase [Gen 98.7 4.4E-08 9.5E-13 86.2 6.9 107 100-220 31-138 (261)
161 PRK11933 yebU rRNA (cytosine-C 98.7 7.6E-07 1.6E-11 87.0 16.1 135 101-244 112-263 (470)
162 PRK01544 bifunctional N5-gluta 98.6 6E-07 1.3E-11 88.8 14.5 129 101-240 346-477 (506)
163 PF07021 MetW: Methionine bios 98.6 1.1E-07 2.4E-12 81.5 8.0 73 100-184 11-84 (193)
164 PF05891 Methyltransf_PK: AdoM 98.6 1.2E-07 2.6E-12 82.7 8.3 103 102-219 55-161 (218)
165 PLN02585 magnesium protoporphy 98.6 4.9E-07 1.1E-11 84.1 12.8 103 102-217 144-248 (315)
166 PRK11727 23S rRNA mA1618 methy 98.6 3.2E-07 7E-12 85.3 11.5 81 102-185 114-199 (321)
167 COG3963 Phospholipid N-methylt 98.6 5.6E-07 1.2E-11 75.2 11.1 109 100-222 46-159 (194)
168 PF08003 Methyltransf_9: Prote 98.6 6E-07 1.3E-11 82.0 11.9 123 73-219 93-219 (315)
169 COG4976 Predicted methyltransf 98.6 1.4E-08 3E-13 88.7 0.5 99 103-219 126-225 (287)
170 PTZ00338 dimethyladenosine tra 98.6 7.7E-07 1.7E-11 82.0 11.9 101 101-218 35-136 (294)
171 PF05185 PRMT5: PRMT5 arginine 98.5 4.1E-07 9E-12 88.4 10.3 105 103-217 187-295 (448)
172 COG2520 Predicted methyltransf 98.5 2.3E-06 4.9E-11 80.0 14.4 147 101-263 187-335 (341)
173 PF09445 Methyltransf_15: RNA 98.5 3.3E-07 7.1E-12 77.1 7.6 75 105-184 2-78 (163)
174 PF00891 Methyltransf_2: O-met 98.5 2.6E-07 5.7E-12 82.4 7.5 98 101-219 99-199 (241)
175 TIGR02081 metW methionine bios 98.5 3.2E-07 7E-12 79.3 7.7 92 101-211 12-104 (194)
176 PRK14896 ksgA 16S ribosomal RN 98.5 5E-07 1.1E-11 81.7 8.4 74 101-185 28-101 (258)
177 KOG1661 Protein-L-isoaspartate 98.4 7.5E-07 1.6E-11 77.0 7.9 118 87-219 68-193 (237)
178 PRK00274 ksgA 16S ribosomal RN 98.4 7.2E-07 1.6E-11 81.4 8.0 74 101-184 41-114 (272)
179 COG2265 TrmA SAM-dependent met 98.4 2.2E-06 4.8E-11 82.9 11.3 104 102-221 293-398 (432)
180 COG0030 KsgA Dimethyladenosine 98.4 2E-06 4.3E-11 77.4 10.0 75 102-184 30-104 (259)
181 KOG1541 Predicted protein carb 98.4 1.2E-06 2.6E-11 76.3 7.9 125 103-245 51-183 (270)
182 KOG3191 Predicted N6-DNA-methy 98.4 9.3E-06 2E-10 68.8 13.0 127 101-241 42-184 (209)
183 COG1041 Predicted DNA modifica 98.4 1.4E-06 3E-11 81.1 8.7 122 87-219 184-310 (347)
184 PF10294 Methyltransf_16: Puta 98.4 1.5E-06 3.3E-11 73.9 8.5 109 100-218 43-155 (173)
185 PRK13256 thiopurine S-methyltr 98.4 2.1E-06 4.6E-11 76.1 9.6 111 101-218 42-162 (226)
186 PF01728 FtsJ: FtsJ-like methy 98.4 1E-06 2.2E-11 75.2 7.0 125 102-249 23-163 (181)
187 TIGR00755 ksgA dimethyladenosi 98.3 3.7E-06 7.9E-11 75.8 10.2 73 101-184 28-103 (253)
188 PF05430 Methyltransf_30: S-ad 98.3 1.7E-06 3.7E-11 69.7 7.1 92 157-266 32-123 (124)
189 PF05724 TPMT: Thiopurine S-me 98.3 2.1E-06 4.7E-11 75.8 8.1 109 100-215 35-151 (218)
190 KOG1709 Guanidinoacetate methy 98.3 7.5E-06 1.6E-10 71.1 11.1 105 101-218 100-205 (271)
191 PRK00050 16S rRNA m(4)C1402 me 98.3 4E-06 8.7E-11 77.2 9.6 78 101-184 18-99 (296)
192 PF01170 UPF0020: Putative RNA 98.3 4.2E-06 9.1E-11 71.7 8.5 112 101-218 27-150 (179)
193 PRK01747 mnmC bifunctional tRN 98.2 8.1E-06 1.8E-10 83.4 11.6 114 102-219 57-206 (662)
194 PF05219 DREV: DREV methyltran 98.2 5.3E-06 1.1E-10 74.3 8.9 94 102-219 94-188 (265)
195 PF05958 tRNA_U5-meth_tr: tRNA 98.2 4.5E-05 9.7E-10 72.2 14.5 78 102-185 196-288 (352)
196 PF13578 Methyltransf_24: Meth 98.2 1.9E-06 4E-11 67.0 4.2 97 107-218 1-104 (106)
197 PRK10742 putative methyltransf 98.2 2.9E-05 6.3E-10 69.4 12.0 81 105-187 91-176 (250)
198 KOG2915 tRNA(1-methyladenosine 98.2 2.5E-05 5.3E-10 70.2 11.5 131 97-248 100-234 (314)
199 KOG1499 Protein arginine N-met 98.1 7.2E-06 1.6E-10 76.1 7.1 105 102-216 60-164 (346)
200 KOG0820 Ribosomal RNA adenine 98.1 1.1E-05 2.3E-10 72.5 7.9 77 101-185 57-133 (315)
201 COG0144 Sun tRNA and rRNA cyto 98.1 6.6E-05 1.4E-09 71.1 13.6 138 99-245 153-310 (355)
202 KOG2940 Predicted methyltransf 98.1 5.7E-06 1.2E-10 72.6 5.8 101 101-218 71-173 (325)
203 PLN02232 ubiquinone biosynthes 98.1 9.6E-06 2.1E-10 68.1 6.5 81 130-219 1-81 (160)
204 KOG1975 mRNA cap methyltransfe 98.1 2.2E-05 4.8E-10 72.0 9.2 116 100-219 115-237 (389)
205 PF03291 Pox_MCEL: mRNA cappin 98.0 8E-06 1.7E-10 76.5 6.2 114 102-219 62-186 (331)
206 TIGR02987 met_A_Alw26 type II 98.0 3.7E-05 8E-10 76.5 10.7 79 102-184 31-121 (524)
207 PF02384 N6_Mtase: N-6 DNA Met 98.0 9.2E-06 2E-10 75.2 5.9 139 99-241 43-204 (311)
208 PF02527 GidB: rRNA small subu 98.0 0.00011 2.3E-09 63.3 11.7 100 104-220 50-149 (184)
209 COG0293 FtsJ 23S rRNA methylas 97.9 0.00011 2.3E-09 64.0 10.8 127 101-249 44-183 (205)
210 PF03059 NAS: Nicotianamine sy 97.9 6.4E-05 1.4E-09 68.5 9.6 108 102-219 120-230 (276)
211 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 0.00013 2.7E-09 67.1 11.5 139 99-246 82-242 (283)
212 PF01269 Fibrillarin: Fibrilla 97.9 0.00031 6.7E-09 61.7 13.1 144 101-265 72-226 (229)
213 TIGR00478 tly hemolysin TlyA f 97.9 8.1E-05 1.8E-09 66.2 9.4 40 101-141 74-113 (228)
214 PF00398 RrnaAD: Ribosomal RNA 97.8 3.4E-05 7.4E-10 70.0 6.4 76 101-184 29-106 (262)
215 PF02005 TRM: N2,N2-dimethylgu 97.8 6.4E-05 1.4E-09 71.7 8.0 104 103-219 50-154 (377)
216 KOG3420 Predicted RNA methylas 97.8 3.3E-05 7.3E-10 63.2 4.9 98 101-210 47-144 (185)
217 COG4076 Predicted RNA methylas 97.8 3.4E-05 7.5E-10 65.8 4.9 98 104-218 34-134 (252)
218 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.00013 2.8E-09 75.1 10.0 81 102-185 190-313 (702)
219 PRK04148 hypothetical protein; 97.7 7.9E-05 1.7E-09 60.6 6.4 70 101-183 15-85 (134)
220 COG1867 TRM1 N2,N2-dimethylgua 97.7 0.00025 5.5E-09 66.4 9.8 102 103-219 53-154 (380)
221 COG0357 GidB Predicted S-adeno 97.7 0.0013 2.9E-08 57.7 13.7 133 103-255 68-201 (215)
222 PF12147 Methyltransf_20: Puta 97.7 0.0006 1.3E-08 62.2 11.6 128 100-240 133-265 (311)
223 PRK11760 putative 23S rRNA C24 97.7 0.00028 6E-09 65.9 9.5 71 101-185 210-280 (357)
224 KOG1500 Protein arginine N-met 97.7 0.00035 7.5E-09 64.7 9.9 102 102-218 177-281 (517)
225 PF01739 CheR: CheR methyltran 97.7 0.0002 4.4E-09 62.2 8.1 112 102-219 31-175 (196)
226 KOG4589 Cell division protein 97.5 0.0017 3.6E-08 55.6 11.7 144 101-268 68-227 (232)
227 PF06080 DUF938: Protein of un 97.5 0.00042 9.1E-09 60.3 8.3 136 101-243 23-166 (204)
228 COG1889 NOP1 Fibrillarin-like 97.5 0.0039 8.4E-08 54.0 13.3 148 100-264 74-227 (231)
229 PF01861 DUF43: Protein of unk 97.5 0.00047 1E-08 61.3 8.0 98 102-213 44-142 (243)
230 KOG2361 Predicted methyltransf 97.4 0.00024 5.2E-09 62.9 5.4 107 102-219 71-183 (264)
231 KOG3178 Hydroxyindole-O-methyl 97.4 0.00052 1.1E-08 63.9 7.2 97 103-219 178-275 (342)
232 PRK10611 chemotaxis methyltran 97.3 0.00052 1.1E-08 63.1 6.8 111 102-218 115-261 (287)
233 TIGR01444 fkbM_fam methyltrans 97.3 0.00091 2E-08 54.3 6.9 55 106-164 2-56 (143)
234 PF04816 DUF633: Family of unk 97.2 0.0031 6.7E-08 55.2 10.4 115 106-241 1-115 (205)
235 PF07942 N2227: N2227-like pro 97.1 0.0017 3.8E-08 59.0 7.6 110 102-221 56-203 (270)
236 PF08123 DOT1: Histone methyla 97.1 0.0052 1.1E-07 53.8 10.3 109 101-217 41-156 (205)
237 COG0116 Predicted N6-adenine-s 97.0 0.0035 7.7E-08 59.4 9.2 112 102-219 191-344 (381)
238 TIGR00006 S-adenosyl-methyltra 97.0 0.0052 1.1E-07 56.9 10.2 79 101-184 19-101 (305)
239 COG1352 CheR Methylase of chem 97.0 0.0034 7.4E-08 57.1 8.6 111 102-218 96-240 (268)
240 KOG1122 tRNA and rRNA cytosine 97.0 0.01 2.2E-07 56.7 11.8 140 100-248 239-396 (460)
241 KOG2730 Methylase [General fun 96.9 0.0018 3.9E-08 56.8 5.8 78 102-184 94-174 (263)
242 PF09243 Rsm22: Mitochondrial 96.9 0.0059 1.3E-07 55.8 8.9 123 101-240 32-158 (274)
243 KOG0822 Protein kinase inhibit 96.8 0.0038 8.3E-08 61.0 7.5 106 103-219 368-478 (649)
244 COG0500 SmtA SAM-dependent met 96.8 0.015 3.3E-07 45.1 9.8 102 106-220 52-156 (257)
245 PF04445 SAM_MT: Putative SAM- 96.8 0.0021 4.6E-08 57.2 5.2 82 104-187 77-163 (234)
246 cd00315 Cyt_C5_DNA_methylase C 96.8 0.038 8.3E-07 50.4 13.5 148 105-268 2-165 (275)
247 KOG2187 tRNA uracil-5-methyltr 96.7 0.0051 1.1E-07 60.0 7.8 105 100-219 381-490 (534)
248 KOG1253 tRNA methyltransferase 96.7 0.0017 3.7E-08 62.9 4.5 105 101-219 108-216 (525)
249 PF05971 Methyltransf_10: Prot 96.7 0.0028 6E-08 58.4 5.7 80 103-185 103-187 (299)
250 COG2384 Predicted SAM-dependen 96.7 0.018 3.8E-07 50.6 10.1 105 101-218 15-119 (226)
251 KOG1562 Spermidine synthase [A 96.7 0.00093 2E-08 60.9 2.0 162 46-219 124-293 (337)
252 PF04672 Methyltransf_19: S-ad 96.6 0.013 2.9E-07 53.1 9.3 127 102-243 68-212 (267)
253 KOG3115 Methyltransferase-like 96.6 0.0094 2E-07 51.7 7.7 115 103-219 61-183 (249)
254 PF04989 CmcI: Cephalosporin h 96.6 0.0042 9E-08 54.2 5.6 105 101-219 31-147 (206)
255 TIGR03439 methyl_EasF probable 96.5 0.038 8.1E-07 51.6 11.9 111 101-219 75-197 (319)
256 KOG1099 SAM-dependent methyltr 96.5 0.019 4.1E-07 50.8 9.1 147 102-275 41-213 (294)
257 PF07091 FmrO: Ribosomal RNA m 96.4 0.012 2.6E-07 52.7 7.6 76 100-182 103-178 (251)
258 KOG1596 Fibrillarin and relate 96.4 0.017 3.8E-07 51.3 8.4 145 100-265 154-309 (317)
259 PF01795 Methyltransf_5: MraW 96.4 0.0095 2.1E-07 55.2 7.1 79 101-184 19-102 (310)
260 COG1063 Tdh Threonine dehydrog 96.4 0.029 6.3E-07 53.0 10.3 99 102-219 168-269 (350)
261 PF03141 Methyltransf_29: Puta 96.4 0.014 3E-07 57.0 8.1 129 73-222 87-221 (506)
262 COG1189 Predicted rRNA methyla 96.3 0.021 4.6E-07 50.7 8.1 98 100-217 77-176 (245)
263 COG0275 Predicted S-adenosylme 96.2 0.034 7.4E-07 51.1 9.6 79 101-184 22-105 (314)
264 PF13679 Methyltransf_32: Meth 96.2 0.012 2.6E-07 48.2 6.1 63 101-165 24-91 (141)
265 COG0286 HsdM Type I restrictio 96.2 0.051 1.1E-06 53.8 11.2 135 101-240 185-346 (489)
266 PF05148 Methyltransf_8: Hypot 96.1 0.011 2.4E-07 51.7 5.6 107 100-241 70-176 (219)
267 KOG2198 tRNA cytosine-5-methyl 96.1 0.044 9.6E-07 51.6 9.6 139 100-243 153-320 (375)
268 COG4121 Uncharacterized conser 96.1 0.0096 2.1E-07 53.5 5.1 113 103-219 59-208 (252)
269 PF06962 rRNA_methylase: Putat 95.9 0.032 6.9E-07 45.8 7.1 107 128-241 1-113 (140)
270 COG1064 AdhP Zn-dependent alco 95.8 0.067 1.4E-06 50.3 9.6 93 101-221 165-261 (339)
271 PRK09424 pntA NAD(P) transhydr 95.7 0.07 1.5E-06 52.9 9.6 110 101-219 163-285 (509)
272 KOG0024 Sorbitol dehydrogenase 95.6 0.072 1.6E-06 49.5 8.9 102 101-218 168-272 (354)
273 PF11599 AviRa: RRNA methyltra 95.6 0.09 2E-06 46.1 8.7 115 101-218 50-213 (246)
274 KOG3045 Predicted RNA methylas 95.5 0.041 8.9E-07 49.6 6.6 86 101-219 179-264 (325)
275 PTZ00357 methyltransferase; Pr 95.4 0.034 7.3E-07 56.3 6.4 104 105-214 703-830 (1072)
276 KOG3987 Uncharacterized conser 95.4 0.0035 7.5E-08 54.5 -0.5 94 101-218 111-206 (288)
277 KOG3201 Uncharacterized conser 95.4 0.025 5.4E-07 47.5 4.4 127 102-241 29-157 (201)
278 PRK09880 L-idonate 5-dehydroge 95.3 0.1 2.2E-06 48.6 9.2 97 102-219 169-266 (343)
279 cd08283 FDH_like_1 Glutathione 95.2 0.23 4.9E-06 47.3 11.3 111 101-219 183-306 (386)
280 PRK11524 putative methyltransf 95.2 0.044 9.6E-07 50.2 6.1 65 155-220 6-81 (284)
281 COG3897 Predicted methyltransf 95.1 0.026 5.6E-07 48.8 4.0 98 102-218 79-177 (218)
282 COG0686 Ald Alanine dehydrogen 94.5 0.27 5.8E-06 45.6 9.2 98 102-216 167-265 (371)
283 PRK13699 putative methylase; P 94.5 0.089 1.9E-06 46.7 6.0 61 158-219 2-72 (227)
284 PF14314 Methyltrans_Mon: Viru 94.5 0.13 2.8E-06 52.3 7.8 162 101-268 321-502 (675)
285 COG1568 Predicted methyltransf 94.5 0.071 1.5E-06 48.5 5.2 79 102-185 152-231 (354)
286 KOG2352 Predicted spermine/spe 94.3 0.26 5.6E-06 48.1 9.0 107 104-219 50-161 (482)
287 PRK05562 precorrin-2 dehydroge 94.3 0.11 2.4E-06 46.0 6.0 84 86-185 8-95 (223)
288 PF00145 DNA_methylase: C-5 cy 94.2 0.68 1.5E-05 42.4 11.5 148 105-269 2-165 (335)
289 TIGR00518 alaDH alanine dehydr 94.0 0.55 1.2E-05 44.8 10.7 98 102-216 166-264 (370)
290 PHA01634 hypothetical protein 93.7 0.23 5E-06 40.1 6.2 75 101-184 27-101 (156)
291 PF07279 DUF1442: Protein of u 93.7 1.7 3.6E-05 38.3 12.0 113 89-218 30-147 (218)
292 PRK07502 cyclohexadienyl dehyd 93.5 1.9 4E-05 39.8 13.0 89 104-216 7-97 (307)
293 COG5459 Predicted rRNA methyla 93.3 0.12 2.6E-06 48.6 4.6 109 101-219 112-225 (484)
294 PF06460 NSP13: Coronavirus NS 93.2 0.72 1.6E-05 41.6 9.2 141 100-266 59-208 (299)
295 KOG0821 Predicted ribosomal RN 93.1 0.078 1.7E-06 46.7 3.0 60 103-168 51-110 (326)
296 PF01555 N6_N4_Mtase: DNA meth 93.1 0.25 5.5E-06 42.6 6.3 44 99-144 188-231 (231)
297 TIGR00561 pntA NAD(P) transhyd 93.1 0.99 2.1E-05 44.9 10.9 106 102-216 163-281 (511)
298 PLN02353 probable UDP-glucose 93.1 2.4 5.2E-05 41.8 13.6 112 105-222 3-130 (473)
299 TIGR03366 HpnZ_proposed putati 93.0 1.9 4.2E-05 38.9 12.2 97 101-219 119-218 (280)
300 KOG2078 tRNA modification enzy 92.9 0.31 6.8E-06 46.9 6.8 66 101-171 248-314 (495)
301 PF12692 Methyltransf_17: S-ad 92.9 0.22 4.9E-06 41.1 5.1 106 98-217 24-132 (160)
302 PRK09260 3-hydroxybutyryl-CoA 92.7 0.46 1E-05 43.4 7.7 102 104-220 2-118 (288)
303 TIGR01202 bchC 2-desacetyl-2-h 92.6 0.66 1.4E-05 42.7 8.6 88 101-219 143-231 (308)
304 PRK11524 putative methyltransf 92.6 0.36 7.8E-06 44.2 6.7 47 99-147 205-251 (284)
305 COG0270 Dcm Site-specific DNA 92.5 1.6 3.5E-05 40.8 11.2 124 103-241 3-138 (328)
306 cd08230 glucose_DH Glucose deh 92.4 0.85 1.9E-05 42.6 9.2 95 101-219 171-269 (355)
307 COG0287 TyrA Prephenate dehydr 92.4 1.6 3.4E-05 40.1 10.6 109 104-244 4-114 (279)
308 PF02826 2-Hacid_dh_C: D-isome 92.3 4.8 0.0001 34.0 12.9 109 101-240 34-143 (178)
309 PRK10309 galactitol-1-phosphat 92.0 1 2.2E-05 41.8 9.2 100 101-219 159-260 (347)
310 TIGR02356 adenyl_thiF thiazole 91.9 0.84 1.8E-05 39.6 7.9 34 102-136 20-55 (202)
311 cd08281 liver_ADH_like1 Zinc-d 91.9 1 2.2E-05 42.4 9.2 99 101-219 190-290 (371)
312 PRK11064 wecC UDP-N-acetyl-D-m 91.8 2.7 5.8E-05 40.7 12.0 103 104-220 4-120 (415)
313 TIGR00936 ahcY adenosylhomocys 91.7 6.7 0.00014 38.0 14.5 118 101-249 193-311 (406)
314 PF04378 RsmJ: Ribosomal RNA s 91.7 1.5 3.2E-05 39.5 9.3 124 107-247 62-189 (245)
315 TIGR00675 dcm DNA-methyltransf 91.6 0.49 1.1E-05 44.0 6.5 120 106-241 1-131 (315)
316 PRK05476 S-adenosyl-L-homocyst 91.6 3.6 7.8E-05 40.0 12.5 118 101-249 210-328 (425)
317 PF03269 DUF268: Caenorhabditi 91.5 0.44 9.6E-06 40.0 5.4 104 103-219 2-111 (177)
318 KOG1501 Arginine N-methyltrans 91.5 0.35 7.5E-06 46.8 5.3 54 105-162 69-122 (636)
319 PRK12475 thiamine/molybdopteri 91.5 0.85 1.9E-05 43.0 8.0 34 102-136 23-58 (338)
320 PF01262 AlaDh_PNT_C: Alanine 91.5 0.59 1.3E-05 39.2 6.3 104 102-216 19-136 (168)
321 TIGR03451 mycoS_dep_FDH mycoth 91.4 1.4 2.9E-05 41.4 9.4 99 101-219 175-276 (358)
322 cd08293 PTGR2 Prostaglandin re 91.3 1.5 3.3E-05 40.5 9.6 95 104-218 156-253 (345)
323 cd08285 NADP_ADH NADP(H)-depen 91.3 1.6 3.5E-05 40.6 9.7 99 100-218 164-265 (351)
324 KOG4058 Uncharacterized conser 91.3 0.29 6.3E-06 40.6 4.0 76 89-168 58-134 (199)
325 COG2961 ComJ Protein involved 91.2 2.3 5.1E-05 38.2 9.9 123 107-246 93-219 (279)
326 PF00670 AdoHcyase_NAD: S-aden 91.2 2.9 6.2E-05 35.2 10.0 90 101-222 21-112 (162)
327 PF02719 Polysacc_synt_2: Poly 91.2 0.76 1.6E-05 42.4 7.1 75 106-184 1-86 (293)
328 PF03721 UDPG_MGDP_dh_N: UDP-g 90.8 0.86 1.9E-05 39.1 6.8 109 105-221 2-122 (185)
329 PRK05808 3-hydroxybutyryl-CoA 90.8 0.88 1.9E-05 41.4 7.2 101 104-220 4-119 (282)
330 cd08237 ribitol-5-phosphate_DH 90.8 2.1 4.5E-05 40.0 9.9 93 101-219 162-256 (341)
331 KOG1098 Putative SAM-dependent 90.7 0.4 8.8E-06 48.1 5.1 126 100-248 42-181 (780)
332 TIGR03201 dearomat_had 6-hydro 90.7 2.7 5.8E-05 39.2 10.5 99 101-219 165-272 (349)
333 cd08239 THR_DH_like L-threonin 90.4 3.2 7E-05 38.3 10.8 98 101-219 162-262 (339)
334 PF11968 DUF3321: Putative met 90.4 3.2 7E-05 36.6 9.9 91 103-219 52-149 (219)
335 COG4017 Uncharacterized protei 90.4 0.37 8E-06 41.6 4.0 39 99-139 41-80 (254)
336 PF02254 TrkA_N: TrkA-N domain 90.4 2.6 5.7E-05 32.4 8.7 91 106-219 1-96 (116)
337 cd05188 MDR Medium chain reduc 90.3 5.1 0.00011 34.9 11.6 98 101-219 133-232 (271)
338 PF00107 ADH_zinc_N: Zinc-bind 90.2 0.58 1.2E-05 36.8 4.9 88 112-220 1-90 (130)
339 PF02737 3HCDH_N: 3-hydroxyacy 90.2 2.3 4.9E-05 36.2 8.8 100 105-220 1-115 (180)
340 TIGR01470 cysG_Nterm siroheme 90.1 0.94 2E-05 39.5 6.5 74 96-185 2-79 (205)
341 PRK05597 molybdopterin biosynt 90.1 1.3 2.9E-05 41.9 8.0 35 102-136 27-62 (355)
342 PRK08644 thiamine biosynthesis 90.1 1.6 3.4E-05 38.3 7.9 33 102-135 27-61 (212)
343 PRK07066 3-hydroxybutyryl-CoA 90.0 1.8 4E-05 40.5 8.7 103 103-220 7-120 (321)
344 PF01210 NAD_Gly3P_dh_N: NAD-d 89.9 3 6.6E-05 34.5 9.2 143 105-267 1-153 (157)
345 KOG1331 Predicted methyltransf 89.6 0.26 5.6E-06 45.0 2.6 101 100-219 43-143 (293)
346 PRK07819 3-hydroxybutyryl-CoA 89.5 2.1 4.6E-05 39.2 8.7 101 104-220 6-122 (286)
347 PLN02494 adenosylhomocysteinas 89.5 7.8 0.00017 38.2 12.8 118 101-249 252-371 (477)
348 PLN02740 Alcohol dehydrogenase 89.4 3.9 8.4E-05 38.7 10.7 99 101-219 197-300 (381)
349 PRK10637 cysG siroheme synthas 89.3 1 2.2E-05 44.2 6.8 76 94-185 3-82 (457)
350 KOG1269 SAM-dependent methyltr 89.2 0.59 1.3E-05 44.5 4.8 105 101-218 109-214 (364)
351 cd08254 hydroxyacyl_CoA_DH 6-h 89.2 2.7 5.8E-05 38.4 9.1 98 101-219 164-263 (338)
352 PRK13699 putative methylase; P 89.0 1.4 3E-05 39.1 6.7 46 100-147 161-206 (227)
353 COG0569 TrkA K+ transport syst 88.9 2.6 5.6E-05 37.3 8.5 71 104-185 1-76 (225)
354 PRK07530 3-hydroxybutyryl-CoA 88.8 2.4 5.1E-05 38.8 8.4 102 103-220 4-120 (292)
355 PRK08293 3-hydroxybutyryl-CoA 88.7 4.5 9.8E-05 36.9 10.2 101 104-219 4-120 (287)
356 cd01492 Aos1_SUMO Ubiquitin ac 88.6 2.6 5.6E-05 36.5 8.1 36 102-137 20-56 (197)
357 PRK07688 thiamine/molybdopteri 88.5 2.6 5.6E-05 39.8 8.6 34 102-136 23-58 (339)
358 PRK06035 3-hydroxyacyl-CoA deh 88.5 2.9 6.2E-05 38.2 8.8 100 104-219 4-121 (291)
359 cd08232 idonate-5-DH L-idonate 88.4 6.6 0.00014 36.1 11.3 96 102-218 165-261 (339)
360 cd01485 E1-1_like Ubiquitin ac 88.4 2.7 5.8E-05 36.4 8.1 35 102-136 18-53 (198)
361 cd05278 FDH_like Formaldehyde 88.4 3.5 7.5E-05 38.0 9.4 98 101-218 166-266 (347)
362 PF10354 DUF2431: Domain of un 88.4 0.53 1.1E-05 39.7 3.5 110 107-219 1-125 (166)
363 PF10237 N6-adenineMlase: Prob 88.2 4.8 0.0001 33.8 9.1 100 101-219 24-123 (162)
364 PRK03562 glutathione-regulated 88.1 2.2 4.8E-05 43.5 8.5 70 103-185 400-474 (621)
365 PF02636 Methyltransf_28: Puta 88.1 0.4 8.7E-06 43.0 2.8 45 103-147 19-71 (252)
366 PRK06719 precorrin-2 dehydroge 88.0 0.93 2E-05 37.8 4.8 76 92-184 2-79 (157)
367 COG1086 Predicted nucleoside-d 87.8 2 4.4E-05 43.0 7.6 79 102-184 249-334 (588)
368 PF05711 TylF: Macrocin-O-meth 87.6 6.1 0.00013 35.6 10.0 108 101-219 73-212 (248)
369 cd08238 sorbose_phosphate_red 87.6 6 0.00013 37.9 10.7 103 102-218 175-287 (410)
370 cd00755 YgdL_like Family of ac 87.5 3.4 7.4E-05 36.8 8.3 35 102-136 10-45 (231)
371 PLN02545 3-hydroxybutyryl-CoA 87.5 3.1 6.8E-05 38.0 8.4 102 103-220 4-120 (295)
372 cd05298 GH4_GlvA_pagL_like Gly 87.5 4.3 9.3E-05 39.7 9.7 42 105-147 2-54 (437)
373 PRK08762 molybdopterin biosynt 87.3 2.2 4.8E-05 40.7 7.4 34 102-135 134-168 (376)
374 cd05213 NAD_bind_Glutamyl_tRNA 87.1 8.9 0.00019 35.5 11.2 96 102-222 177-275 (311)
375 PRK08268 3-hydroxy-acyl-CoA de 87.1 3.4 7.5E-05 41.1 8.9 103 102-220 6-123 (507)
376 cd08294 leukotriene_B4_DH_like 87.0 5.2 0.00011 36.4 9.6 96 101-218 142-240 (329)
377 PLN03154 putative allyl alcoho 86.7 5.2 0.00011 37.4 9.6 98 101-219 157-258 (348)
378 PF01488 Shikimate_DH: Shikima 86.7 4.6 0.0001 32.5 8.0 74 101-186 10-86 (135)
379 cd05285 sorbitol_DH Sorbitol d 86.6 10 0.00022 35.0 11.4 99 100-218 160-264 (343)
380 PLN02827 Alcohol dehydrogenase 86.5 6.5 0.00014 37.2 10.3 99 101-219 192-295 (378)
381 TIGR02825 B4_12hDH leukotriene 86.4 6.5 0.00014 36.0 10.0 97 101-219 137-237 (325)
382 COG4798 Predicted methyltransf 86.4 1.1 2.4E-05 38.9 4.3 116 100-219 46-166 (238)
383 cd00757 ThiF_MoeB_HesA_family 86.4 2.9 6.4E-05 36.9 7.3 35 102-136 20-55 (228)
384 TIGR02822 adh_fam_2 zinc-bindi 86.3 6.7 0.00015 36.3 10.1 89 101-219 164-254 (329)
385 PRK00066 ldh L-lactate dehydro 86.3 12 0.00026 34.8 11.7 112 101-219 4-122 (315)
386 PRK12749 quinate/shikimate deh 86.0 9.7 0.00021 35.0 10.7 102 75-184 98-205 (288)
387 COG0604 Qor NADPH:quinone redu 85.9 5 0.00011 37.5 8.9 98 101-220 141-242 (326)
388 PRK06130 3-hydroxybutyryl-CoA 85.9 5.5 0.00012 36.6 9.2 101 104-219 5-115 (311)
389 PF03141 Methyltransf_29: Puta 85.9 3.4 7.3E-05 40.8 7.9 103 101-219 364-467 (506)
390 KOG2798 Putative trehalase [Ca 85.9 1.2 2.6E-05 41.4 4.5 106 103-220 151-296 (369)
391 PF01408 GFO_IDH_MocA: Oxidore 85.8 14 0.0003 28.4 11.9 110 105-243 2-114 (120)
392 COG1748 LYS9 Saccharopine dehy 85.8 3.9 8.5E-05 39.3 8.2 73 104-185 2-78 (389)
393 cd08233 butanediol_DH_like (2R 85.8 11 0.00025 34.8 11.4 99 101-219 171-272 (351)
394 PRK07340 ornithine cyclodeamin 85.8 19 0.00041 33.3 12.6 76 99-185 121-198 (304)
395 PRK03659 glutathione-regulated 85.8 8.4 0.00018 39.2 11.1 93 104-219 401-498 (601)
396 PRK07417 arogenate dehydrogena 85.6 4.6 0.0001 36.7 8.4 87 105-219 2-90 (279)
397 PRK09496 trkA potassium transp 85.6 5.4 0.00012 38.6 9.3 73 102-185 230-307 (453)
398 cd05291 HicDH_like L-2-hydroxy 85.4 13 0.00028 34.3 11.4 109 104-219 1-117 (306)
399 PRK08618 ornithine cyclodeamin 85.2 24 0.00053 32.8 13.2 115 58-185 85-202 (325)
400 PRK10458 DNA cytosine methylas 85.2 3.2 6.9E-05 40.9 7.5 127 103-241 88-250 (467)
401 cd08277 liver_alcohol_DH_like 85.2 11 0.00024 35.3 11.0 99 101-219 183-286 (365)
402 cd00401 AdoHcyase S-adenosyl-L 85.0 8.9 0.00019 37.2 10.3 88 101-218 200-288 (413)
403 PRK12549 shikimate 5-dehydroge 84.9 14 0.00031 33.7 11.3 98 75-184 101-201 (284)
404 cd05197 GH4_glycoside_hydrolas 84.8 8.9 0.00019 37.3 10.3 42 105-147 2-54 (425)
405 TIGR00497 hsdM type I restrict 84.4 7.9 0.00017 38.4 10.0 113 103-218 218-354 (501)
406 PRK08306 dipicolinate synthase 84.4 8.8 0.00019 35.4 9.7 86 102-216 151-238 (296)
407 KOG2671 Putative RNA methylase 84.3 0.66 1.4E-05 43.6 2.1 82 100-185 206-294 (421)
408 PRK00045 hemA glutamyl-tRNA re 84.1 13 0.00029 36.0 11.2 101 101-222 180-282 (423)
409 COG1565 Uncharacterized conser 84.1 1.9 4.2E-05 40.8 5.1 48 100-147 75-130 (370)
410 TIGR02818 adh_III_F_hyde S-(hy 84.0 13 0.00028 35.0 11.0 99 101-219 184-287 (368)
411 PRK10669 putative cation:proto 83.7 5.6 0.00012 40.0 8.7 93 104-219 418-515 (558)
412 cd08300 alcohol_DH_class_III c 83.7 16 0.00034 34.3 11.4 99 101-219 185-288 (368)
413 COG5379 BtaA S-adenosylmethion 83.7 2.3 5E-05 39.2 5.3 73 101-182 62-139 (414)
414 cd05297 GH4_alpha_glucosidase_ 83.6 3.7 8E-05 39.9 7.1 75 105-184 2-83 (423)
415 cd08295 double_bond_reductase_ 83.6 11 0.00024 34.8 10.1 97 101-218 150-250 (338)
416 PRK06249 2-dehydropantoate 2-r 83.5 7.6 0.00016 35.9 8.9 98 102-217 4-104 (313)
417 PRK09422 ethanol-active dehydr 83.5 15 0.00033 33.6 11.0 98 101-218 161-260 (338)
418 COG0499 SAM1 S-adenosylhomocys 83.4 43 0.00093 32.0 13.9 119 101-249 207-325 (420)
419 cd05292 LDH_2 A subgroup of L- 83.3 23 0.0005 32.7 12.1 107 105-219 2-116 (308)
420 KOG1227 Putative methyltransfe 83.3 0.29 6.4E-06 45.0 -0.6 78 101-184 193-271 (351)
421 cd05279 Zn_ADH1 Liver alcohol 83.2 9.5 0.00021 35.7 9.7 98 101-218 182-284 (365)
422 PTZ00117 malate dehydrogenase; 83.0 15 0.00033 34.2 10.8 109 102-219 4-122 (319)
423 COG3129 Predicted SAM-dependen 82.6 4.3 9.3E-05 36.3 6.4 82 102-186 78-164 (292)
424 cd08278 benzyl_alcohol_DH Benz 82.6 17 0.00038 34.0 11.2 99 101-219 185-285 (365)
425 cd01488 Uba3_RUB Ubiquitin act 82.5 4.5 9.7E-05 37.4 6.9 34 105-138 1-35 (291)
426 PRK05708 2-dehydropantoate 2-r 82.5 4.8 0.0001 37.1 7.2 93 104-216 3-101 (305)
427 TIGR01408 Ube1 ubiquitin-activ 82.5 4.4 9.5E-05 43.7 7.7 52 84-136 3-58 (1008)
428 PLN02586 probable cinnamyl alc 82.4 11 0.00023 35.5 9.6 93 101-218 182-277 (360)
429 TIGR02819 fdhA_non_GSH formald 82.3 14 0.0003 35.4 10.5 108 101-219 184-299 (393)
430 cd08301 alcohol_DH_plants Plan 82.3 11 0.00024 35.3 9.7 99 101-219 186-289 (369)
431 COG4565 CitB Response regulato 82.2 16 0.00034 32.3 9.6 76 128-219 2-82 (224)
432 PRK08328 hypothetical protein; 82.1 2 4.3E-05 38.2 4.3 35 102-136 26-61 (231)
433 PRK08507 prephenate dehydrogen 82.0 10 0.00022 34.3 9.0 87 105-219 2-90 (275)
434 PLN02256 arogenate dehydrogena 81.9 39 0.00085 31.2 13.0 107 101-244 34-143 (304)
435 PRK06223 malate dehydrogenase; 81.8 20 0.00044 32.8 11.1 109 104-220 3-120 (307)
436 TIGR01809 Shik-DH-AROM shikima 81.8 14 0.00031 33.7 9.9 64 75-139 97-162 (282)
437 PRK06949 short chain dehydroge 81.7 11 0.00024 32.9 9.1 77 102-184 8-95 (258)
438 PRK15181 Vi polysaccharide bio 81.7 3.7 8E-05 38.4 6.2 81 102-184 14-99 (348)
439 PF06690 DUF1188: Protein of u 81.3 3.9 8.5E-05 36.5 5.7 64 101-184 40-104 (252)
440 PRK10083 putative oxidoreducta 81.3 13 0.00028 34.1 9.7 98 101-218 159-258 (339)
441 cd08286 FDH_like_ADH2 formalde 81.3 17 0.00037 33.4 10.5 98 101-218 165-265 (345)
442 PRK06718 precorrin-2 dehydroge 81.2 5.8 0.00013 34.4 6.8 37 96-134 3-41 (202)
443 PLN02427 UDP-apiose/xylose syn 81.1 6.4 0.00014 37.3 7.7 78 102-184 13-95 (386)
444 cd05293 LDH_1 A subgroup of L- 81.1 32 0.00068 32.0 12.1 110 102-220 2-121 (312)
445 TIGR01035 hemA glutamyl-tRNA r 81.0 21 0.00046 34.5 11.3 99 101-222 178-279 (417)
446 TIGR01381 E1_like_apg7 E1-like 80.6 2.1 4.5E-05 43.7 4.2 35 102-137 337-373 (664)
447 PTZ00082 L-lactate dehydrogena 80.6 31 0.00068 32.1 11.9 77 103-186 6-85 (321)
448 TIGR02279 PaaC-3OHAcCoADH 3-hy 80.3 8.9 0.00019 38.2 8.6 104 102-221 4-122 (503)
449 PRK06153 hypothetical protein; 80.1 2.1 4.6E-05 41.0 3.9 34 102-135 175-209 (393)
450 PRK06046 alanine dehydrogenase 80.1 42 0.0009 31.3 12.6 113 59-185 88-203 (326)
451 cd08234 threonine_DH_like L-th 80.1 16 0.00035 33.3 9.8 95 101-218 158-256 (334)
452 PF02153 PDH: Prephenate dehyd 79.8 27 0.00058 31.3 10.9 76 116-216 1-76 (258)
453 PRK14806 bifunctional cyclohex 79.8 18 0.00039 37.6 11.0 89 104-216 4-94 (735)
454 PRK06141 ornithine cyclodeamin 79.7 52 0.0011 30.5 13.7 112 59-184 84-198 (314)
455 cd01065 NAD_bind_Shikimate_DH 79.3 15 0.00033 29.5 8.5 74 101-186 17-92 (155)
456 COG0169 AroE Shikimate 5-dehyd 79.2 12 0.00026 34.4 8.4 71 76-147 99-171 (283)
457 cd05290 LDH_3 A subgroup of L- 79.2 32 0.0007 31.9 11.4 110 105-220 1-120 (307)
458 PRK06194 hypothetical protein; 79.0 16 0.00035 32.6 9.4 77 102-185 5-93 (287)
459 PRK08945 putative oxoacyl-(acy 79.0 14 0.0003 32.2 8.7 77 101-184 10-101 (247)
460 PLN02662 cinnamyl-alcohol dehy 78.9 7.3 0.00016 35.5 7.1 79 102-184 3-85 (322)
461 cd01487 E1_ThiF_like E1_ThiF_l 78.8 3.1 6.6E-05 35.2 4.2 31 105-136 1-33 (174)
462 PRK05600 thiamine biosynthesis 78.7 12 0.00026 35.7 8.6 35 101-135 39-74 (370)
463 PRK06129 3-hydroxyacyl-CoA deh 78.7 15 0.00033 33.8 9.2 98 104-216 3-115 (308)
464 PRK07102 short chain dehydroge 78.7 14 0.00031 32.1 8.6 74 104-184 2-85 (243)
465 PRK14027 quinate/shikimate deh 78.6 36 0.00077 31.2 11.4 64 75-141 101-166 (283)
466 PF03807 F420_oxidored: NADP o 78.6 16 0.00034 27.0 7.7 87 105-216 1-91 (96)
467 PF00106 adh_short: short chai 78.5 23 0.0005 28.5 9.4 76 104-185 1-90 (167)
468 PLN02702 L-idonate 5-dehydroge 78.4 10 0.00022 35.4 8.1 98 101-218 180-284 (364)
469 TIGR02355 moeB molybdopterin s 78.3 3.2 7E-05 37.1 4.4 38 102-139 23-61 (240)
470 PF13241 NAD_binding_7: Putati 78.3 9.6 0.00021 29.1 6.5 65 101-184 5-69 (103)
471 cd08236 sugar_DH NAD(P)-depend 78.3 28 0.00061 31.9 10.9 98 101-218 158-257 (343)
472 PRK11908 NAD-dependent epimera 78.3 6.3 0.00014 36.6 6.6 70 104-184 2-77 (347)
473 PRK08213 gluconate 5-dehydroge 77.8 14 0.0003 32.5 8.4 75 102-184 11-98 (259)
474 PRK06172 short chain dehydroge 77.7 20 0.00043 31.3 9.3 76 102-184 6-93 (253)
475 cd08245 CAD Cinnamyl alcohol d 77.5 48 0.001 30.1 12.1 95 101-219 161-256 (330)
476 cd05281 TDH Threonine dehydrog 77.4 20 0.00044 32.9 9.7 97 101-218 162-261 (341)
477 PRK12921 2-dehydropantoate 2-r 77.3 14 0.0003 33.6 8.4 92 105-216 2-99 (305)
478 TIGR01627 A_thal_3515 uncharac 77.0 27 0.00058 30.8 9.4 49 97-147 34-82 (225)
479 PF03435 Saccharop_dh: Sacchar 76.9 9.4 0.0002 36.2 7.4 72 106-184 1-76 (386)
480 COG0677 WecC UDP-N-acetyl-D-ma 76.8 72 0.0016 30.9 13.0 107 104-222 10-131 (436)
481 PF11899 DUF3419: Protein of u 76.7 5.7 0.00012 38.1 5.8 43 100-144 33-75 (380)
482 PRK07904 short chain dehydroge 76.6 21 0.00045 31.6 9.2 79 101-184 6-96 (253)
483 PRK08223 hypothetical protein; 76.3 3.7 8E-05 37.8 4.2 38 102-139 26-64 (287)
484 PLN00203 glutamyl-tRNA reducta 76.2 36 0.00078 34.1 11.5 102 102-222 265-371 (519)
485 PRK12429 3-hydroxybutyrate deh 76.1 17 0.00038 31.6 8.5 76 103-184 4-90 (258)
486 PLN02819 lysine-ketoglutarate 76.1 13 0.00029 40.2 8.9 75 102-186 568-659 (1042)
487 PRK00258 aroE shikimate 5-dehy 76.0 17 0.00037 33.0 8.5 74 101-186 121-196 (278)
488 cd08261 Zn_ADH7 Alcohol dehydr 76.0 21 0.00046 32.6 9.4 97 101-218 158-257 (337)
489 PLN02896 cinnamyl-alcohol dehy 75.7 12 0.00026 34.9 7.7 78 101-185 8-89 (353)
490 PRK15116 sulfur acceptor prote 75.7 4.3 9.3E-05 37.0 4.5 36 102-137 29-65 (268)
491 PRK07574 formate dehydrogenase 75.7 20 0.00042 34.5 9.2 108 102-240 191-300 (385)
492 cd01491 Ube1_repeat1 Ubiquitin 75.4 8.1 0.00018 35.6 6.2 35 102-137 18-54 (286)
493 PF02056 Glyco_hydro_4: Family 75.4 11 0.00024 32.4 6.6 70 105-183 1-81 (183)
494 PRK08655 prephenate dehydrogen 75.3 56 0.0012 31.9 12.4 84 105-216 2-89 (437)
495 cd08243 quinone_oxidoreductase 75.3 39 0.00084 30.2 10.8 95 101-218 141-237 (320)
496 PRK08818 prephenate dehydrogen 75.1 7.6 0.00016 37.1 6.1 79 103-220 4-88 (370)
497 PRK07589 ornithine cyclodeamin 75.1 69 0.0015 30.3 12.6 76 98-184 124-202 (346)
498 PRK07454 short chain dehydroge 74.9 30 0.00064 29.9 9.6 75 102-184 5-92 (241)
499 PRK12491 pyrroline-5-carboxyla 74.9 24 0.00052 32.0 9.2 90 104-219 3-96 (272)
500 PF05050 Methyltransf_21: Meth 74.9 7 0.00015 31.6 5.3 42 108-149 1-48 (167)
No 1
>PLN02823 spermine synthase
Probab=100.00 E-value=7.7e-50 Score=371.40 Aligned_cols=266 Identities=75% Similarity=1.265 Sum_probs=233.6
Q ss_pred ceeeecCCcccccccccccccC-CccccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccc
Q 022451 3 EISCSNGISQANGADAKNVALT-GYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSA 81 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~ 81 (297)
||--.||.|........+-++. .+-.+.|++|...++.+..+.+.++|++++|+||+|.|+++..+|++|++||..|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~ 82 (336)
T PLN02823 3 EIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSA 82 (336)
T ss_pred ceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccc
Confidence 5666777776543333333322 123557999988888999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE
Q 022451 82 EVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161 (297)
Q Consensus 82 ~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~ 161 (297)
+.+++.|||+|+|++++.+++|++||+||+|+|+++++++++.+..+|++|||||+++++||+||+.....+.+||++++
T Consensus 83 ~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~ 162 (336)
T PLN02823 83 EADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI 162 (336)
T ss_pred cchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE
Confidence 99999999999999999999999999999999999999999877889999999999999999999876555789999999
Q ss_pred EcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHH-HHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE-FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 162 ~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~-~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
.+||+.||+..+++||+|++|+++|...+|+..|++.+||+ . ++++|+|||++++|..++..+...+.++.+.+++++
T Consensus 163 ~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 163 INDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred EChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 99999999877789999999999887556667899999998 8 799999999999998765434456788999999999
Q ss_pred hCCceeEEEEecCccCCceeEEEEecCCC
Q 022451 241 VFKYVVPYSAHIPSFADTWGWIMVSIYNP 269 (297)
Q Consensus 241 ~F~~v~~~~~~vp~~~~~~~~~~as~~~~ 269 (297)
+|+.+.+|.+.+|+|++.|+|++||+.+.
T Consensus 242 vF~~v~~y~~~vPsf~~~w~f~~aS~~~~ 270 (336)
T PLN02823 242 VFKYVVPYTAHVPSFADTWGWVMASDHPF 270 (336)
T ss_pred hCCCEEEEEeecCCCCCceEEEEEeCCcc
Confidence 99999999999999988899999999764
No 2
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=3.5e-48 Score=347.45 Aligned_cols=236 Identities=45% Similarity=0.833 Sum_probs=215.3
Q ss_pred ceEEeeec---cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeE
Q 022451 30 CWYEEEIE---ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106 (297)
Q Consensus 30 ~w~~~~~~---~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~V 106 (297)
+|++|..+ ++.+..|++.+++++++|+||+|.|++++.+|++|++||.+|+++++++.|||+|+|+|++.+++|++|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V 80 (246)
T PF01564_consen 1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV 80 (246)
T ss_dssp TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence 69999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC-CceEEEEcCCC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLAD 185 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~-~yD~Ii~D~~~ 185 (297)
|+||+|+|+++++++++++..+|++|||||.|+++|++||+.....++|||++++.+||+.||+...+ +||+|++|+++
T Consensus 81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD 160 (246)
T ss_dssp EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence 99999999999999999878999999999999999999998654446799999999999999998877 99999999999
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCc-eeEEEE
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADT-WGWIMV 264 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~-~~~~~a 264 (297)
|. ++...|++.+||+. ++++|+|||++++|..+| ......++.+.++++++|+.+.+|...+|+|++. |.|++|
T Consensus 161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~ 235 (246)
T PF01564_consen 161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASA 235 (246)
T ss_dssp TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEE
T ss_pred CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEE
Confidence 77 45456999999999 899999999999998766 5677889999999999999999999999999865 789999
Q ss_pred ecCCCC
Q 022451 265 SIYNPH 270 (297)
Q Consensus 265 s~~~~~ 270 (297)
|+..+.
T Consensus 236 s~~~~~ 241 (246)
T PF01564_consen 236 SKDINL 241 (246)
T ss_dssp ESSTTT
T ss_pred eCCCCc
Confidence 988743
No 3
>PLN02366 spermidine synthase
Probab=100.00 E-value=1.2e-47 Score=353.30 Aligned_cols=238 Identities=32% Similarity=0.605 Sum_probs=214.9
Q ss_pred ccccceEEee--eccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCC
Q 022451 26 YRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNP 103 (297)
Q Consensus 26 ~~~~~w~~~~--~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~ 103 (297)
.....|++|. .+++.+..|++.++|++++|+||+|.|+++..+|++|++||.+|++++|++.|||+|+|+|++.++++
T Consensus 13 ~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~p 92 (308)
T PLN02366 13 TVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNP 92 (308)
T ss_pred hhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCC
Confidence 3447899987 35677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEc
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGD 182 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D 182 (297)
++||+||||+|+++++++++++..+|++||||++|+++||++|+.....+++||++++++||+.|++.. +++||+|++|
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D 172 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVD 172 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEc
Confidence 999999999999999999997778999999999999999999975433467899999999999999865 5689999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC-CceeEEEEecCccC-Ccee
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KYVVPYSAHIPSFA-DTWG 260 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F-~~v~~~~~~vp~~~-~~~~ 260 (297)
+++|. ++...|++.+||+. ++++|+|||++++|.++| |...+.++.+.++++++| +.+..|.+.+|+|+ +.|+
T Consensus 173 ~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~ 247 (308)
T PLN02366 173 SSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIG 247 (308)
T ss_pred CCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceE
Confidence 99887 56678999999999 899999999999998877 677888999999999999 56777788999996 4699
Q ss_pred EEEEecCC
Q 022451 261 WIMVSIYN 268 (297)
Q Consensus 261 ~~~as~~~ 268 (297)
|++||+++
T Consensus 248 f~~as~~~ 255 (308)
T PLN02366 248 FVLCSKEG 255 (308)
T ss_pred EEEEECCC
Confidence 99999984
No 4
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=1.3e-47 Score=350.58 Aligned_cols=263 Identities=38% Similarity=0.706 Sum_probs=226.1
Q ss_pred ccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEE
Q 022451 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (297)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL 107 (297)
...|++|..+++.+..+.+.++|++++|+||+|.|+++..+|++|++||..|+++++++.|||+|+|+|++.++++++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL 81 (283)
T PRK00811 2 MELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVL 81 (283)
T ss_pred CCcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEE
Confidence 35799999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCC
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~ 186 (297)
+||||+|.++++++++++..+|++||+|+.+++.|+++|+. ....+++||++++.+|++.|++..+++||+|++|+++|
T Consensus 82 ~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp 161 (283)
T PRK00811 82 IIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDP 161 (283)
T ss_pred EEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCC
Confidence 99999999999999987788999999999999999999974 33334689999999999999987678999999999988
Q ss_pred CCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEEe
Q 022451 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMVS 265 (297)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~as 265 (297)
. .+...|++.+||+. ++++|+|||+++++..+| +...+.++.+.++++++|+.+.+|...+|+|+ +.|+|++||
T Consensus 162 ~--~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as 236 (283)
T PRK00811 162 V--GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFAS 236 (283)
T ss_pred C--CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEee
Confidence 7 55568999999999 799999999999998776 45677899999999999999999999999995 559999999
Q ss_pred cCCCC-CCcccccc-cccccCCCCCCcccCCCCC
Q 022451 266 IYNPH-SHSILSLS-YFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 266 ~~~~~-~~~i~~~~-~~~~~~~~~~~~~~~~~~~ 297 (297)
+.+.. .++...+. +.+.. ....+|||+-.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~--~~~~~yy~~~~h 268 (283)
T PRK00811 237 KNDDLKFLPLDVIEARFAER--GIKTRYYNPELH 268 (283)
T ss_pred cCcccccCccccchhhHhhc--cCCCeEECHHHH
Confidence 85433 22222111 11110 113789987543
No 5
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=1.1e-47 Score=344.58 Aligned_cols=242 Identities=17% Similarity=0.242 Sum_probs=206.6
Q ss_pred ceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEE
Q 022451 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM 109 (297)
Q Consensus 30 ~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~i 109 (297)
+|++|..+++.+..+++.++|++++|+||+|.|+++..+||+|+|| ..|+++.||+.|||||+|+|++.|++|++||+|
T Consensus 1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi 79 (262)
T PRK00536 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV 79 (262)
T ss_pred CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence 5999988889999999999999999999999999999999999999 555699999999999999999999999999999
Q ss_pred ccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCC
Q 022451 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG 189 (297)
Q Consensus 110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~ 189 (297)
|+|.|+.++++++|. .+|+.||||++|+++||+||+....+++|||++++.. +.+...++||+||+|+.
T Consensus 80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~fDVIIvDs~----- 148 (262)
T PRK00536 80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKYDLIICLQE----- 148 (262)
T ss_pred cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcCCEEEEcCC-----
Confidence 999999999999985 4999999999999999999996555789999999972 33323478999999953
Q ss_pred CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCC
Q 022451 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNP 269 (297)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~ 269 (297)
++.+||+. ++++|+|||+++++.++| +...+.++.+.++++++|+.+.+|.+.+|+++ .|+|++||+...
T Consensus 149 ------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g-~wgf~~aS~~~~ 218 (262)
T PRK00536 149 ------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVAPLRILS-NKGYIYASFKTH 218 (262)
T ss_pred ------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEecCCCcc-hhhhheecCCCC
Confidence 34699999 899999999999999988 66788999999999999999999999999995 699999998753
Q ss_pred CCCcccccccccccCCCCCCcccCCCCC
Q 022451 270 HSHSILSLSYFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 270 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 297 (297)
+... ..+++ .+.....+|||+-.|
T Consensus 219 p~~~-~~~~~---~~~~~~lryy~~~~h 242 (262)
T PRK00536 219 PLKD-LMLQK---IEALKSVRYYNEDIH 242 (262)
T ss_pred Cccc-hhhhh---hcccCCceeeCHHHH
Confidence 2211 11111 222233689987543
No 6
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-46 Score=340.55 Aligned_cols=261 Identities=39% Similarity=0.728 Sum_probs=230.2
Q ss_pred ccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEE
Q 022451 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (297)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL 107 (297)
...|+.|..++..+..+++.+++++++|+||.|.++++.++|++|.+||..|+++++++.|||+++|++++.|++|++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL 81 (282)
T COG0421 2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL 81 (282)
T ss_pred CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence 46899998887888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCC
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI 187 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~ 187 (297)
+||+|+|+++++++++.+.+++++|||||+|+++||+||+.......|||++++++||.+|++...++||+||+|.++|.
T Consensus 82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence 99999999999999999899999999999999999999986543334899999999999999988789999999999995
Q ss_pred CCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCc-eeEEEEec
Q 022451 188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADT-WGWIMVSI 266 (297)
Q Consensus 188 ~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~-~~~~~as~ 266 (297)
+|+..|++.+||+. ++++|+|+|++++|+++| +.+.+....+.+.++++|+.+.+|...+|+++.+ |+|+++|.
T Consensus 162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~ 236 (282)
T COG0421 162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF 236 (282)
T ss_pred --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence 88889999999999 799999999999998887 6777888999999999999999999999999765 99999995
Q ss_pred CCCCCCccccccccc--ccCCCCCCcccCCCC
Q 022451 267 YNPHSHSILSLSYFE--NLDSSRPNSFTSPIN 296 (297)
Q Consensus 267 ~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~ 296 (297)
+.. +++.++.... .... ..++|||+-.
T Consensus 237 ~~~--~~~~~~~~~~~~~~~~-~~~~yy~~~~ 265 (282)
T COG0421 237 NKA--HPLKSLDALQARALAL-LTLKYYNEDI 265 (282)
T ss_pred CCC--CcccchhHHHHHHhhh-hhhccCcHHH
Confidence 542 3333322222 2223 5568887643
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=1.2e-43 Score=322.61 Aligned_cols=232 Identities=38% Similarity=0.753 Sum_probs=212.4
Q ss_pred eEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEc
Q 022451 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMG 110 (297)
Q Consensus 31 w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG 110 (297)
|++|..+++.+..++++++|++++|+||+|.|+++..+|++|++||..|+++.+++.|+|+++|++++.+++|++||+||
T Consensus 1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG 80 (270)
T TIGR00417 1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG 80 (270)
T ss_pred CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence 88888889999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred cchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCC
Q 022451 111 GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG 190 (297)
Q Consensus 111 ~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~ 190 (297)
||+|.++++++++.+..++++||+|+++++.|+++|+.....+.+++++++.+|++++++...++||+|++|.++|. .
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~ 158 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G 158 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence 99999999999987678999999999999999999875434467899999999999999877789999999999876 4
Q ss_pred CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEEecC
Q 022451 191 PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMVSIY 267 (297)
Q Consensus 191 p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~as~~ 267 (297)
+...|++.+||+. ++++|+|||+++++..+| +...+.++.+.++++++|+.+.+|.+.+|+|+ +.|+|++||+.
T Consensus 159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 5568999999999 899999999999997766 55678889999999999999999999999995 46999999983
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=4.7e-43 Score=324.99 Aligned_cols=257 Identities=32% Similarity=0.496 Sum_probs=214.4
Q ss_pred eeecCCc-----ccccccccccccCCcc-cc--ceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcC
Q 022451 5 SCSNGIS-----QANGADAKNVALTGYR-KS--CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDG 76 (297)
Q Consensus 5 ~~~~~~~-----~~~~~~~~~~~~~~~~-~~--~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg 76 (297)
+-+.||. |-|...++||.|-... .. .|- +.+-.. +-.+..++|++++|+||+|.|+++..+ .|++||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG 124 (374)
T PRK01581 50 KQDRGIQYAETKQDNQVQSENVVIVPTDSHNLDIWD--EISLKE-IQAGEHTNLFAEKSNYQNINLLQVSDI--RLYLDK 124 (374)
T ss_pred eeccCceeccCCccchhhccceEEeecCCCchhhhh--HHHHHH-HhhcccCEEEecCCCCceEEEEEcCCE--EEEECC
Confidence 3455664 5566777888764322 22 232 222111 112456899999999999999999976 699999
Q ss_pred ccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh---ccCCC
Q 022451 77 KLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NKEAF 153 (297)
Q Consensus 77 ~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~---~~~~~ 153 (297)
.+|++++||+.|||+|+|+++..+++|++||+||||+|.++++++++.+..+|++|||||+|+++|++++.+ +...+
T Consensus 125 ~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 125 QLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred eeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 999999999999999999999999999999999999999999999987789999999999999999986432 34456
Q ss_pred CCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHH
Q 022451 154 SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC 233 (297)
Q Consensus 154 ~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~ 233 (297)
++||++++++||++|++...++||+|++|+++|... +...|++.+||+. ++++|+|||+++++..+| +.....++.
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~-~~~~LyT~EFy~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~ 280 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATE-LLSTLYTSELFAR-IATFLTEDGAFVCQSNSP--ADAPLVYWS 280 (374)
T ss_pred CCCceEEEECcHHHHHHhcCCCccEEEEcCCCcccc-chhhhhHHHHHHH-HHHhcCCCcEEEEecCCh--hhhHHHHHH
Confidence 789999999999999988778999999999987632 3468999999999 799999999999998777 455667788
Q ss_pred HHHHHHhhCCceeEEEEecCccCCceeEEEEecCCCC
Q 022451 234 IYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPH 270 (297)
Q Consensus 234 i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~~ 270 (297)
+.++++++|+.+.+|.+.+|+|++.|+|++||+.+..
T Consensus 281 i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~~ 317 (374)
T PRK01581 281 IGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAYV 317 (374)
T ss_pred HHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCccc
Confidence 9999999999999999999999988999999997654
No 9
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=5.9e-40 Score=298.21 Aligned_cols=236 Identities=31% Similarity=0.538 Sum_probs=211.2
Q ss_pred cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHH
Q 022451 38 ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA 117 (297)
Q Consensus 38 ~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~ 117 (297)
.-.++++-.++++|..+|+||+|.|.+..+ .+.|++||..|.+.+||..|||.++++++...+..++||++|+|+|..+
T Consensus 226 ~~~eqqlygdeIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAl 304 (508)
T COG4262 226 HTSEQQLYGDEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLAL 304 (508)
T ss_pred ehHHHHhhcCceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHH
Confidence 334556667899999999999999999775 4789999999999999999999999998877788899999999999999
Q ss_pred HHHHhcCCCcEEEEEECCHHHHHHHHhhh---hhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccC
Q 022451 118 REILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYK 194 (297)
Q Consensus 118 ~~l~~~~~~~~v~~VEid~~vi~~a~~~f---~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~ 194 (297)
+++++++...+|+.||+||+|++++++.. ..++.++.|||++++..|+.+|++...+.||+||+|++||.... ...
T Consensus 305 RellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~~r 383 (508)
T COG4262 305 RELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-IGR 383 (508)
T ss_pred HHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-hhh
Confidence 99999977999999999999999999653 25677899999999999999999998899999999999997533 368
Q ss_pred cccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCCCCCcc
Q 022451 195 LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPHSHSI 274 (297)
Q Consensus 195 L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~~~~~i 274 (297)
+|+.|||.. ++++|+++|.+++|.++| +..++.++++..|+++..-.+.||.+++|+|++ |+|++|++.+..-++.
T Consensus 384 lYS~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGe-WGf~l~~~~~~~fep~ 459 (508)
T COG4262 384 LYSVEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAAPGDADFEPP 459 (508)
T ss_pred hhhHHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEEecCcccc-cceeecccccCCCCCC
Confidence 999999999 899999999999999988 778899999999999998889999999999998 9999999998776654
Q ss_pred ccccc
Q 022451 275 LSLSY 279 (297)
Q Consensus 275 ~~~~~ 279 (297)
.+..+
T Consensus 460 ~e~~~ 464 (508)
T COG4262 460 TEYRP 464 (508)
T ss_pred cccCc
Confidence 44443
No 10
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=2.8e-38 Score=310.83 Aligned_cols=254 Identities=31% Similarity=0.540 Sum_probs=211.0
Q ss_pred eEEeeeccccccccccccEEEEeeCCCCcEEEEEeCC-ce--eEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEE
Q 022451 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKP-FG--KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (297)
Q Consensus 31 w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~-~g--~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL 107 (297)
|..+.........+..++++++++|+||+|.|+++.. .| +.|++||..|++++|++.|||+++|+++..++++++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL 302 (521)
T PRK03612 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVL 302 (521)
T ss_pred HcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEE
Confidence 4555444444556677899999999999999999766 35 88999999999999999999999999998889999999
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh--h-hccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL--V-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f--~-~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
+||||+|.++++++++++..+|++||+||+|++.||+++ . .+...++|||++++.+|++++++..+++||+|++|++
T Consensus 303 ~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~ 382 (521)
T PRK03612 303 VLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP 382 (521)
T ss_pred EEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC
Confidence 999999999999999865589999999999999999954 3 2334567899999999999999877789999999998
Q ss_pred CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCceeEEE
Q 022451 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIM 263 (297)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~ 263 (297)
+|.... ...+++.|||+. ++++|+|||++++|..+| +...+.+..+.++++++ | .+.+|...+|+|+ .|+|++
T Consensus 383 ~~~~~~-~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g-~w~f~~ 456 (521)
T PRK03612 383 DPSNPA-LGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFG-EWGFVL 456 (521)
T ss_pred CCCCcc-hhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcc-hhHHHe
Confidence 876322 257999999999 899999999999998877 56678889999999999 8 8999999999996 699999
Q ss_pred EecCCCCCCcccccccccccCCCCCCcccCCCCC
Q 022451 264 VSIYNPHSHSILSLSYFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 264 as~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 297 (297)
||+.+.+... ...+ .+...+|||+-.|
T Consensus 457 as~~~~~~~~----~~~~---~~~~~~~y~~~~h 483 (521)
T PRK03612 457 AGAGARPPLA----VPTE---LPVPLRFLDPALL 483 (521)
T ss_pred eeCCCCcccc----cchh---cccCCcccCHHHH
Confidence 9987543221 1111 1245799987544
No 11
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-36 Score=266.88 Aligned_cols=269 Identities=28% Similarity=0.528 Sum_probs=235.2
Q ss_pred CCccccceEEeeec-----cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHh
Q 022451 24 TGYRKSCWYEEEIE-----ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL 98 (297)
Q Consensus 24 ~~~~~~~w~~~~~~-----~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~ 98 (297)
-.....+|+.|... |+.+.++.++++++.++|.||++.|+++..+|++|.+||..|.+++|++.|.||+.|+|++
T Consensus 38 h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~ 117 (337)
T KOG1562|consen 38 HPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALC 117 (337)
T ss_pred cCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccc
Confidence 34556789987643 2777888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD 177 (297)
.+++|++||+||+|+|+..++..+|....+|+.+|+|..+++..++|++.....+++++|.++.+|+..|++.. .++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 99999999999999999999999998889999999999999999999996655689999999999999999886 67899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA- 256 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~- 256 (297)
+||.|..+|. +|+..+|-+.+|+. +++.||+||+++++..+. |.+....+...+..+.+|+.+..--+.+|+|+
T Consensus 198 Vii~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTyps 272 (337)
T KOG1562|consen 198 VIITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAITTVPTYPS 272 (337)
T ss_pred EEEEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceeeecCCCCcc
Confidence 9999999998 88889999999999 899999999999997654 88888999999999999996543336889997
Q ss_pred CceeEEEEecCCCC---CCccccccccccc-CCCCCCcccCCCCC
Q 022451 257 DTWGWIMVSIYNPH---SHSILSLSYFENL-DSSRPNSFTSPINH 297 (297)
Q Consensus 257 ~~~~~~~as~~~~~---~~~i~~~~~~~~~-~~~~~~~~~~~~~~ 297 (297)
+.-+|.+||+..+. ..+.++++..|.. -.+++.+|||+--|
T Consensus 273 g~igf~l~s~~~~~~~~~~p~n~i~~~e~~~l~~~~L~yyn~e~h 317 (337)
T KOG1562|consen 273 GRIGFMLCSKLKPDGKYKTPGNPITCKEQLSLYEEQLLYYNVEFH 317 (337)
T ss_pred ceEEEEEecccCCCCCccCCCCccCHHHHHhhhhhhhccCCchhc
Confidence 45789999964443 5677888877776 34456699987543
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.96 E-value=1.9e-27 Score=215.37 Aligned_cols=204 Identities=21% Similarity=0.326 Sum_probs=162.1
Q ss_pred EEeeCCCCcEEEEEeCCceeEEEEcCc-ccccc----C--ChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhc
Q 022451 51 HTGETRYQDIALLDTKPFGKALVIDGK-LQSAE----V--DEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH 123 (297)
Q Consensus 51 ~~~~s~~~~i~V~~~~~~g~~L~ldg~-~q~~~----~--d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~ 123 (297)
...++.|+.|.|+|...+ |+|.+|+. .|+.. + ..+.|+++|.. .+...+++++||+||||+|.++..++++
T Consensus 10 ~~~~~~~~~i~v~e~~~~-R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l~~~ 87 (262)
T PRK04457 10 RPAKAGFPEVGVSEEGGV-RSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFIYTY 87 (262)
T ss_pred ccccccCCCcEEEecCCE-EEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHHHHh
Confidence 346678999999999874 99999884 67653 2 23579998863 4445678899999999999999999988
Q ss_pred CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHH
Q 022451 124 KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEF 203 (297)
Q Consensus 124 ~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~ 203 (297)
.|..+|++||+||++++.|+++|.... .++|++++++|+++++....++||+|++|.++.. .+...+.+.+||+.
T Consensus 88 ~p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~~ 162 (262)
T PRK04457 88 LPDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFDD 162 (262)
T ss_pred CCCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHHH
Confidence 788899999999999999999987642 3589999999999999876778999999988644 23357889999999
Q ss_pred HHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCCC
Q 022451 204 VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPH 270 (297)
Q Consensus 204 ~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~~ 270 (297)
++++|+|||++++|. +.....+..++++++++|+.+..+ +|....+|..++|++..+.
T Consensus 163 -~~~~L~pgGvlvin~-----~~~~~~~~~~l~~l~~~F~~~~~~---~~~~~~~N~v~~a~~~~~~ 220 (262)
T PRK04457 163 -CRNALSSDGIFVVNL-----WSRDKRYDRYLERLESSFEGRVLE---LPAESHGNVAVFAFKSAPK 220 (262)
T ss_pred -HHHhcCCCcEEEEEc-----CCCchhHHHHHHHHHHhcCCcEEE---EecCCCccEEEEEECCCCC
Confidence 799999999999985 334455678899999999863322 2433445777888876543
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=139.00 Aligned_cols=170 Identities=22% Similarity=0.289 Sum_probs=137.0
Q ss_pred eEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc
Q 022451 70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (297)
Q Consensus 70 ~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~ 149 (297)
-.+.+||..|.......++..++....+......++|||.+.|-|.++.++++. +..+|..||-||.|+++|+-+ ++.
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lN-PwS 179 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLN-PWS 179 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccC-CCC
Confidence 468899988776555566777777766665567999999999999999999986 456999999999999999876 333
Q ss_pred cCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCC-CcCC
Q 022451 150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG-IFSH 227 (297)
Q Consensus 150 ~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~-~~~~ 227 (297)
.. +...+++++.+|+.+++++- ++.||+||+|++.-. .+..||+.+||++ +.+.|+|||.+.-.++.|+ .+..
T Consensus 180 r~-l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 180 RE-LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred cc-ccccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence 32 23458999999999999874 567999999998432 2358999999999 8999999999999998887 3445
Q ss_pred chHHHHHHHHHHhh-CCcee
Q 022451 228 TEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 228 ~~~~~~i~~~l~~~-F~~v~ 246 (297)
....+.+.+.|+++ |-.|.
T Consensus 255 ~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 255 LDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CChhHHHHHHHHhcCceeee
Confidence 66778888999988 65443
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.63 E-value=1.1e-15 Score=119.86 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++.+|||||||+|.++.++++..+..+|++||+||.+++.|++++.... ..+|++++.+|+ .+.....++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence 3578999999999999999996567899999999999999999984322 358999999999 555455678999999
Q ss_pred cC-CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.. ..+. ... .-...++++. +++.|+|||+++++.
T Consensus 77 ~~~~~~~--~~~-~~~~~~~l~~-~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHF--LLP-LDERRRVLER-IRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGG--CCH-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCcccc--ccc-hhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 87 2111 010 0122467888 799999999999874
No 15
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.52 E-value=6.8e-14 Score=110.57 Aligned_cols=111 Identities=27% Similarity=0.384 Sum_probs=85.4
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEc
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGD 182 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D 182 (297)
.+|||+|||+|.++..+++.. ..+++++|+||..+++|++++.... -.++++++.+|.++..+. ...+||+|+.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 589999999999999999876 6899999999999999999987653 246899999999988733 46889999999
Q ss_pred CCCCCC-CCC-ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIE-GGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~-~~p-~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++-... ... ...-...+|++. +.+.|+|||++++.+
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence 974211 011 111234589999 799999999998764
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.52 E-value=8.7e-13 Score=117.42 Aligned_cols=136 Identities=19% Similarity=0.280 Sum_probs=105.2
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-CC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ES 175 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-~~ 175 (297)
....+..++|||||||.|.++..+++..+..+|++||+++++.+.|+++..++. -.+|++++++|.-++.+... .+
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehhhHHHhhhcccccc
Confidence 333445899999999999999999998666899999999999999999988754 24899999999999887644 45
Q ss_pred ceEEEEcCCC--CCCC-CC--c-------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-C
Q 022451 176 YDVIIGDLAD--PIEG-GP--C-------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-F 242 (297)
Q Consensus 176 yD~Ii~D~~~--~~~~-~p--~-------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F 242 (297)
||+|++++|- .... .+ . ..+.-.++++. ++++|+|||.+++- ...+.+..+...+++. |
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~V-------~r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAFV-------HRPERLAEIIELLKSYNL 187 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEEE-------ecHHHHHHHHHHHHhcCC
Confidence 9999999972 1111 11 0 12333568887 79999999999875 2456778889999883 4
Q ss_pred C
Q 022451 243 K 243 (297)
Q Consensus 243 ~ 243 (297)
.
T Consensus 188 ~ 188 (248)
T COG4123 188 E 188 (248)
T ss_pred C
Confidence 4
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.52 E-value=5.7e-14 Score=119.22 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=93.5
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
..++|||+|||+|.++..+++..+..+|+++|+++.+++.|++++..+.. ++++++.+|..+.+. .++||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~----~~v~~~~~d~~~~~~--~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL----ENVEVVQSDLFEALP--DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC----TTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc----ccccccccccccccc--ccceeEEEE
Confidence 67899999999999999999987777899999999999999999887641 239999999877654 578999999
Q ss_pred cCCCCCCCCCc-cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 182 D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++|-.. +.. ....-.+|++. ++++|+|||.+.+-.... .. .. ..+++.|..+...
T Consensus 105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~~~~---~~---~~---~~l~~~f~~~~~~ 160 (170)
T PF05175_consen 105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVINSH---LG---YE---RLLKELFGDVEVV 160 (170)
T ss_dssp ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEEETT---SC---HH---HHHHHHHS--EEE
T ss_pred ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEeecC---CC---hH---HHHHHhcCCEEEE
Confidence 987432 211 12234688999 799999999886543221 11 12 2277788876544
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.48 E-value=2.6e-12 Score=110.77 Aligned_cols=142 Identities=16% Similarity=0.210 Sum_probs=99.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++..... -++++++.+|+.++- . .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~-~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFG-Q-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCC-C-CCCccEEE
Confidence 45789999999999999988876667899999999999999999876543 234999999998753 3 56899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc-eeEEEEecCccCCce
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY-VVPYSAHIPSFADTW 259 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~-v~~~~~~vp~~~~~~ 259 (297)
++... . -.++++. +.+.|+|||++++..... ....+.++...+ .-. ...|...+|...+..
T Consensus 118 ~~~~~----~------~~~~l~~-~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~ 179 (187)
T PRK00107 118 SRAVA----S------LSDLVEL-CLPLLKPGGRFLALKGRD----PEEEIAELPKAL---GGKVEEVIELTLPGLDGER 179 (187)
T ss_pred Ecccc----C------HHHHHHH-HHHhcCCCeEEEEEeCCC----hHHHHHHHHHhc---CceEeeeEEEecCCCCCcE
Confidence 97531 1 1378888 799999999998875321 222222222222 222 233344567665555
Q ss_pred eEEEEec
Q 022451 260 GWIMVSI 266 (297)
Q Consensus 260 ~~~~as~ 266 (297)
-+++..|
T Consensus 180 ~~~~~~~ 186 (187)
T PRK00107 180 HLVIIRK 186 (187)
T ss_pred EEEEEec
Confidence 5666554
No 19
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.47 E-value=1.2e-12 Score=114.18 Aligned_cols=130 Identities=17% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~yD~ 178 (297)
.+..+|||||||+|..+..+++..+..+|++||+++.+++.|++.+...+ -++++++.+|+.+.+. ..+++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccce
Confidence 36789999999999999999887667799999999999999999876432 2679999999944444 23568999
Q ss_pred EEEcCCCCCCCCCc--cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 179 IIGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 179 Ii~D~~~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
|++..++|+...+. .......+++. +.+.|+|||++++.+. .......+.+.+++.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAE 172 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhC
Confidence 99987666532111 12234689999 8999999999998742 345566777777654
No 20
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.45 E-value=2.2e-12 Score=111.80 Aligned_cols=130 Identities=13% Similarity=0.165 Sum_probs=99.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~ 178 (297)
.....||+||||+|.++..+++..|..++++||+++.+++.|++.....+ -++++++.+|+..++.. ....+|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeE
Confidence 35568999999999999999987778899999999999999998765432 25899999999887643 2357999
Q ss_pred EEEcCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 179 IIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 179 Ii~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
|+++.++||.... ...+...++++. +.+.|+|||.+.+.+. .......+...+.+.
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN 148 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence 9999988873221 123556789999 8999999999988753 333455566666553
No 21
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.45 E-value=8e-12 Score=118.99 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=119.5
Q ss_pred eCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEE
Q 022451 54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCD 133 (297)
Q Consensus 54 ~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VE 133 (297)
.-|.|+|.-.... +|+.+.++-......++ ++.++...+...++..+|||||||+|.++..+++..+..+|+++|
T Consensus 208 gePlqYIlG~~~F-~G~~f~V~p~vLIPRpe----TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVD 282 (423)
T PRK14966 208 GEPVAYILGVREF-YGRRFAVNPNVLIPRPE----TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASD 282 (423)
T ss_pred CCCceeEeeeeee-cCcEEEeCCCccCCCcc----HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEE
Confidence 3466666655443 46667776555454443 333332222222355799999999999999988766678999999
Q ss_pred CCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCCC----------CCccCcc------
Q 022451 134 IDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEG----------GPCYKLY------ 196 (297)
Q Consensus 134 id~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~~----------~p~~~L~------ 196 (297)
+|+.+++.|+++....+ .+++++.+|..+.......+||+|++++|- +... .|...|+
T Consensus 283 iS~~ALe~AreNa~~~g-----~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL 357 (423)
T PRK14966 283 ISPPALETARKNAADLG-----ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGL 357 (423)
T ss_pred CCHHHHHHHHHHHHHcC-----CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchH
Confidence 99999999999976442 479999999865421123579999999972 1110 1111111
Q ss_pred --cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCceeEEEEe
Q 022451 197 --TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMVS 265 (297)
Q Consensus 197 --t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~as 265 (297)
-+.+++. +.++|+|||.+++..+. .+. ..+.+.+++. |..+.. .+.+.+...++++.
T Consensus 358 ~~yr~Ii~~-a~~~LkpgG~lilEiG~----~Q~---e~V~~ll~~~Gf~~v~v----~kDl~G~dR~v~~~ 417 (423)
T PRK14966 358 SCIRTLAQG-APDRLAEGGFLLLEHGF----DQG---AAVRGVLAENGFSGVET----LPDLAGLDRVTLGK 417 (423)
T ss_pred HHHHHHHHH-HHHhcCCCcEEEEEECc----cHH---HHHHHHHHHCCCcEEEE----EEcCCCCcEEEEEE
Confidence 2345555 57899999999887642 233 3444555443 554433 24455545666654
No 22
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.42 E-value=2.3e-12 Score=112.58 Aligned_cols=105 Identities=22% Similarity=0.348 Sum_probs=85.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---c--CC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---R--KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~--~~ 174 (297)
..|++||+||+++|..+..+++. ++..+|+.+|+||+..+.|+++|...+ -+.+++++.+|+.+++.. . .+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag---~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG---LDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---GGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---CCCcEEEEEeccHhhHHHHHhccCCC
Confidence 57899999999999999999975 456899999999999999999997543 136999999999998764 1 24
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+||+|+.- . -..++|.. +.+.|+|||++++.
T Consensus 121 ~fD~VFiDa~K--------~-~y~~y~~~-~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADK--------R-NYLEYFEK-ALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTG--------G-GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred ceeEEEEcccc--------c-chhhHHHH-HhhhccCCeEEEEc
Confidence 79999999741 1 12378888 68999999999876
No 23
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.41 E-value=8e-12 Score=109.61 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=89.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-cCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~-~~~~y 176 (297)
...+++||+||.+.|..+.+++...+ ..+++.+|+||+..+.|+++|...+ -+++++++. +|+.+.+.. ..+.|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~~~~~~f 133 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSF 133 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHhccCCCc
Confidence 35899999999999999999998655 7899999999999999999997554 256799999 699999975 46899
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+||+|+.-. ...+||+. +.+.|+|||++++-
T Consensus 134 DliFIDadK~---------~yp~~le~-~~~lLr~GGliv~D 165 (219)
T COG4122 134 DLVFIDADKA---------DYPEYLER-ALPLLRPGGLIVAD 165 (219)
T ss_pred cEEEEeCChh---------hCHHHHHH-HHHHhCCCcEEEEe
Confidence 9999997421 24589999 78999999999865
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.41 E-value=6.6e-13 Score=110.29 Aligned_cols=107 Identities=22% Similarity=0.321 Sum_probs=84.4
Q ss_pred CCCCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~ 178 (297)
....+|||+|||+|.++..++ +..+..++++||+++++++.|++.+.... -++++++++|..+ +... .++||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeE
Confidence 357899999999999999999 56667899999999999999999876442 2589999999988 5421 278999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+++..-.. .+ .-..+++. +.+.|+++|++++..
T Consensus 77 I~~~~~l~~--~~----~~~~~l~~-~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 77 IISNGVLHH--FP----DPEKVLKN-IIRLLKPGGILIISD 110 (152)
T ss_dssp EEEESTGGG--TS----HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEEcCchhh--cc----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence 999965322 11 12367888 899999999998874
No 25
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.41 E-value=8e-11 Score=112.59 Aligned_cols=116 Identities=24% Similarity=0.278 Sum_probs=87.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
..+++||++|||+|+++..++.. +..+|++||+|+.+++.|++++..++ ++.++++++.+|++++++. ..++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 35789999999999998877654 46699999999999999999998764 2225899999999999854 246899
Q ss_pred EEEEcCCCCCCCCCccCcc-----cHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+|++|+|.-. .....+. -.++++. +.++|+|||++++.++++
T Consensus 296 lVilDPP~f~--~~k~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 296 VIVMDPPKFV--ENKSQLMGACRGYKDINML-AIQLLNPGGILLTFSCSG 342 (396)
T ss_pred EEEECCCCCC--CChHHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCC
Confidence 9999987411 1101111 1234555 679999999999876554
No 26
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.41 E-value=4.6e-12 Score=108.74 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=82.2
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+++|||+|||+|.++..++...+..+|++||+++.+++.++++....+ -++++++.+|+.++. ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence 4789999999999999988876667899999999999999998875432 246999999998752 3568999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+... . -.++++. +.+.|+|||++++..+
T Consensus 116 ~~~~----~------~~~~~~~-~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 116 RALA----S------LNVLLEL-TLNLLKVGGYFLAYKG 143 (181)
T ss_pred hhhh----C------HHHHHHH-HHHhcCCCCEEEEEcC
Confidence 7521 1 1367787 7999999999998754
No 27
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=113.01 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 90 e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
+.+.++++ ..+.+|.|||||.|..+..+++.+|...|+++|.|++|++.|++.+ |++++..+|.++|
T Consensus 21 dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w- 87 (257)
T COG4106 21 DLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW- 87 (257)
T ss_pred HHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc-
Confidence 44444443 5688999999999999999999999999999999999999998864 7789999999988
Q ss_pred hccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.++..|+|+.++.-+| -| .+ .+.|.. +-..|+|||+|+++.
T Consensus 88 -~p~~~~dllfaNAvlqW--lp-dH---~~ll~r-L~~~L~Pgg~LAVQm 129 (257)
T COG4106 88 -KPEQPTDLLFANAVLQW--LP-DH---PELLPR-LVSQLAPGGVLAVQM 129 (257)
T ss_pred -CCCCccchhhhhhhhhh--cc-cc---HHHHHH-HHHhhCCCceEEEEC
Confidence 34578999999988666 33 12 266777 789999999999995
No 28
>PLN02476 O-methyltransferase
Probab=99.40 E-value=1.2e-11 Score=112.53 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=87.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-----C
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----K 173 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-----~ 173 (297)
...+++||+||+++|..+.+++.. ++..+|+++|.|++..+.|+++|...+ + .++++++.+|+.+.|..- .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l-~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--V-SHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEcCHHHHHHHHHhcccC
Confidence 357899999999999999998874 346689999999999999999997653 2 368999999999988642 3
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++||+||+|+..+ -..++|+. +.+.|+|||++++.
T Consensus 193 ~~FD~VFIDa~K~---------~Y~~y~e~-~l~lL~~GGvIV~D 227 (278)
T PLN02476 193 SSYDFAFVDADKR---------MYQDYFEL-LLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCEEEECCCHH---------HHHHHHHH-HHHhcCCCcEEEEe
Confidence 5899999997521 12478888 78999999999876
No 29
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.40 E-value=1.4e-11 Score=105.83 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=92.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++.... -++++++.+|+...+ .++||+|
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v 101 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAI 101 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEE
Confidence 356789999999999999999987667899999999999999999876442 246999999975433 3579999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~ 247 (297)
+++.... . -.++++. +.+.|+|||.+++... .......+.+.+++. |..+..
T Consensus 102 ~~~~~~~-------~--~~~~l~~-~~~~Lk~gG~lv~~~~------~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 102 FIGGSGG-------N--LTAIIDW-SLAHLHPGGRLVLTFI------LLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred EECCCcc-------C--HHHHHHH-HHHhcCCCeEEEEEEe------cHhhHHHHHHHHHHCCCCcceE
Confidence 9874311 1 2467888 7999999999988742 122345556666654 544443
No 30
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.40 E-value=3.4e-12 Score=101.29 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=84.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|||+|||.|..+..+++..+..+|+++|+++.+++.+++++.... .++++++.+|+...+....++||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEE
Confidence 45679999999999999999987666899999999999999999876442 35789999997754443446899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.... . ..++++. +.+.|+|||.++++.
T Consensus 94 ~~~~~~-------~--~~~~l~~-~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG-------L--LQEILEA-IWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch-------h--HHHHHHH-HHHHcCCCCEEEEEe
Confidence 975311 1 2378898 799999999999874
No 31
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.39 E-value=5.8e-12 Score=119.36 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=95.7
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
..+|||||||+|.++..+++..|..+|++||+|+.+++.|++++..+... ...+++++.+|+...+ ..++||+|+++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~--~~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccC--CCCCEEEEEEC
Confidence 46999999999999999998777889999999999999999998654210 1247899999986654 23579999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
++-+........ ...++|+. ++++|+|||.|.+-... .. .....+++.|+.+..
T Consensus 306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~nr-----~l----~y~~~L~~~fg~~~~ 359 (378)
T PRK15001 306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVANR-----HL----DYFHKLKKIFGNCTT 359 (378)
T ss_pred cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEec-----Cc----CHHHHHHHHcCCceE
Confidence 874331111111 23578888 79999999988776421 11 233567778887653
No 32
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.39 E-value=8.7e-13 Score=125.91 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=141.7
Q ss_pred hHHHHHHH-HHHh------cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE
Q 022451 87 IYHESLVH-PALL------HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE 159 (297)
Q Consensus 87 ~y~e~l~~-~~l~------~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~ 159 (297)
.||.+|.. .++. .+.....+|++|.|+|.+...+..+.|..++++||+||.|++.|++||++.. +.|.+
T Consensus 273 ~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~ 348 (482)
T KOG2352|consen 273 QYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNK 348 (482)
T ss_pred chhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhh
Confidence 57887752 3332 2345678999999999999999988888999999999999999999999874 34889
Q ss_pred EEEcchHHHHhcc------CCCceEEEEcCCCCCC---CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchH
Q 022451 160 LVINDARAELESR------KESYDVIIGDLADPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV 230 (297)
Q Consensus 160 ~~~~Da~~~l~~~------~~~yD~Ii~D~~~~~~---~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~ 230 (297)
++..||..|+++. +.+||+++.|...+.. ..|+..+....+++. ++..|.|.|++++|..+ .+...
T Consensus 349 V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~----r~~~~ 423 (482)
T KOG2352|consen 349 VHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVT----RNSSF 423 (482)
T ss_pred hhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEec----CCcch
Confidence 9999999998763 3579999999864322 235556778899999 89999999999999754 35566
Q ss_pred HHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCCCCCcccccccccccCCCCCCcccCCCC
Q 022451 231 FSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPHSHSILSLSYFENLDSSRPNSFTSPIN 296 (297)
Q Consensus 231 ~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 296 (297)
...+...|+++|+....+. ..++.|..++|...+.. .+- ++++...+.-.++=++|+
T Consensus 424 ~~~~~~~l~~vf~~l~~~~----~~~~~N~il~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~ 480 (482)
T KOG2352|consen 424 KDEVLMNLAKVFPQLYHHQ----LEEDVNEILIGQMPPKQ-KPG----NLENLVRKMQGGYDDAIN 480 (482)
T ss_pred hHHHHHhhhhhhHHHhhhh----ccCCCceeEEeecChhc-Cch----hhhhhhhhhccCcccccc
Confidence 7788899999999865332 23466777777765532 111 144544444444445443
No 33
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.37 E-value=3.7e-11 Score=104.38 Aligned_cols=131 Identities=19% Similarity=0.145 Sum_probs=98.1
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...+..+|||+|||+|.++.++++. .+..+|+++|+++.+++.|++++...+. .++++++.+|+.+++.....+||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~---~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV---LNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCCeEEEEechhhhHhhcCCCCC
Confidence 3456789999999999999988764 3457999999999999999998765421 26799999999887765557899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYS 249 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~ 249 (297)
.|++..... . -.++++. +.+.|+|||.+++.. ...+.+..+.+.+++. | .+....
T Consensus 114 ~V~~~~~~~-------~--~~~~l~~-~~~~LkpgG~lv~~~------~~~~~~~~~~~~l~~~g~-~~~~~~ 169 (198)
T PRK00377 114 RIFIGGGSE-------K--LKEIISA-SWEIIKKGGRIVIDA------ILLETVNNALSALENIGF-NLEITE 169 (198)
T ss_pred EEEECCCcc-------c--HHHHHHH-HHHHcCCCcEEEEEe------ecHHHHHHHHHHHHHcCC-CeEEEE
Confidence 999964211 1 1367888 789999999998863 2345567777788665 4 444443
No 34
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.37 E-value=2.1e-11 Score=103.60 Aligned_cols=125 Identities=24% Similarity=0.229 Sum_probs=102.5
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.+...+...++|||||+|+++.+++...|..+|+++|-|++++++.+++....+ -++++++.+||-++|.... ++
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~L~~~~-~~ 103 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEALPDLP-SP 103 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHhhcCCC-CC
Confidence 334456789999999999999999987889999999999999999999876443 3899999999999997654 89
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
|.||+.-.. . -.+.++. +..+|+|||.+++|. ...+....+++.+++.--
T Consensus 104 daiFIGGg~--------~--i~~ile~-~~~~l~~ggrlV~na------itlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 104 DAIFIGGGG--------N--IEEILEA-AWERLKPGGRLVANA------ITLETLAKALEALEQLGG 153 (187)
T ss_pred CEEEECCCC--------C--HHHHHHH-HHHHcCcCCeEEEEe------ecHHHHHHHHHHHHHcCC
Confidence 999998541 1 1377888 799999999999995 456777788888887633
No 35
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.37 E-value=2.2e-11 Score=111.70 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=103.2
Q ss_pred CCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECC
Q 022451 56 RYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 56 ~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid 135 (297)
|.++|.-.... +|..+.++..+-+..+......+..+. ..+....+.+|||+|||+|.++..+++..+..+|+++|+|
T Consensus 77 Pl~yi~g~~~f-~g~~f~v~~~vlipr~~te~lv~~~l~-~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis 154 (284)
T TIGR03533 77 PVAYLTNEAWF-AGLEFYVDERVLIPRSPIAELIEDGFA-PWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS 154 (284)
T ss_pred cHHHHcCCCee-cCcEEEECCCCccCCCchHHHHHHHHH-HHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence 55555543322 256677775554444431111111110 0111234679999999999999999987677899999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCCC----------CCccCc--------c
Q 022451 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEG----------GPCYKL--------Y 196 (297)
Q Consensus 136 ~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~~----------~p~~~L--------~ 196 (297)
+.+++.|+++...++ -..+++++.+|+.+.+. .++||+|++|+|- +... .|...| .
T Consensus 155 ~~al~~A~~n~~~~~---~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~ 229 (284)
T TIGR03533 155 PDALAVAEINIERHG---LEDRVTLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL 229 (284)
T ss_pred HHHHHHHHHHHHHcC---CCCcEEEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence 999999999976543 13589999999877652 3579999999862 1100 010001 1
Q ss_pred cHHHHHHHHcccCCCCcEEEEecC
Q 022451 197 TKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 197 t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+.+++. +.++|+|||.+++..+
T Consensus 230 ~~~il~~-a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 230 VRRILAE-AADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHH-HHHhcCCCCEEEEEEC
Confidence 2456777 6899999999999864
No 36
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.36 E-value=6.5e-11 Score=108.54 Aligned_cols=192 Identities=15% Similarity=0.188 Sum_probs=117.7
Q ss_pred CCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEEC
Q 022451 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134 (297)
Q Consensus 55 s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEi 134 (297)
-|.++|.-.... +|+-+.++....+..++.....+.... .+.......+|||+|||+|.++..++...+..+|+++|+
T Consensus 69 ~pl~yi~g~~~f-~g~~f~v~~~vliPr~ete~lv~~~l~-~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDi 146 (284)
T TIGR00536 69 VPVAYLLGSKEF-YGLEFFVNEHVLIPRPETEELVEKALA-SLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDI 146 (284)
T ss_pred CCHHHHhCcceE-cCeEEEECCCCcCCCCccHHHHHHHHH-HhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEEC
Confidence 455666443322 367777776655554442222222111 111122237899999999999999998777789999999
Q ss_pred CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCCC----------CCccCc--------
Q 022451 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEG----------GPCYKL-------- 195 (297)
Q Consensus 135 d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~~----------~p~~~L-------- 195 (297)
++.+++.|+++....+ ...+++++.+|..+.+. .++||+|+++++- +... .|...|
T Consensus 147 s~~al~~a~~n~~~~~---~~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~ 221 (284)
T TIGR00536 147 SPDALAVAEENAEKNQ---LEHRVEFIQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLN 221 (284)
T ss_pred CHHHHHHHHHHHHHcC---CCCcEEEEECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHH
Confidence 9999999999876443 12469999999876542 2479999999862 1110 110011
Q ss_pred ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh--hCCceeEEEEecCccCCceeEEEEe
Q 022451 196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ--VFKYVVPYSAHIPSFADTWGWIMVS 265 (297)
Q Consensus 196 ~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~--~F~~v~~~~~~vp~~~~~~~~~~as 265 (297)
..+.+++. +.+.|+|||++++..+. .+. ..+.+.+.. .|..+.. .+.+.+...++++.
T Consensus 222 ~~~~ii~~-a~~~L~~gG~l~~e~g~----~q~---~~~~~~~~~~~~~~~~~~----~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 222 ILRQIIEL-APDYLKPNGFLVCEIGN----WQQ---KSLKELLRIKFTWYDVEN----GRDLNGKERVVLGF 281 (284)
T ss_pred HHHHHHHH-HHHhccCCCEEEEEECc----cHH---HHHHHHHHhcCCCceeEE----ecCCCCCceEEEEE
Confidence 23456777 68999999999998652 222 233333442 2444432 24455545666654
No 37
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.36 E-value=5.5e-12 Score=112.54 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=85.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-----CC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-----~~ 174 (297)
..+++||+||||+|..+..+++. .+..+|+++|+|++.++.|++++...+ + .++++++.+|+.+.+..- .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l-~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--V-DHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHHhCCCCC
Confidence 56899999999999998888764 456799999999999999999997653 2 368999999999987541 46
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+|++|...+ . ..++++. +.+.|+|||++++.
T Consensus 144 ~fD~VfiDa~k~--------~-y~~~~~~-~~~ll~~GG~ii~d 177 (234)
T PLN02781 144 EFDFAFVDADKP--------N-YVHFHEQ-LLKLVKVGGIIAFD 177 (234)
T ss_pred CCCEEEECCCHH--------H-HHHHHHH-HHHhcCCCeEEEEE
Confidence 899999997521 1 1267888 78999999999863
No 38
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=7.1e-11 Score=107.21 Aligned_cols=176 Identities=17% Similarity=0.218 Sum_probs=109.6
Q ss_pred eeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 022451 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148 (297)
Q Consensus 69 g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~ 148 (297)
|..+.++-.+....+......+.+.. .....++.+|||+|||+|.++..++...+..+++++|+++.+++.|++++..
T Consensus 77 ~~~~~~~~~~lipr~~te~l~~~~~~--~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~ 154 (275)
T PRK09328 77 GLDFKVSPGVLIPRPETEELVEWALE--ALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH 154 (275)
T ss_pred CcEEEECCCceeCCCCcHHHHHHHHH--hccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 45555554444444432223332221 1123456799999999999999999877778999999999999999998762
Q ss_pred ccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCC-----------CCCccCcc--------cHHHHHHHHccc
Q 022451 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE-----------GGPCYKLY--------TKSFYEFVVKPR 208 (297)
Q Consensus 149 ~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~-----------~~p~~~L~--------t~ef~~~~~~~~ 208 (297)
. ...+++++.+|....+. .++||+|+++++- +.. ..|...++ -..+++. +.+.
T Consensus 155 ~----~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~ 227 (275)
T PRK09328 155 G----LGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRY 227 (275)
T ss_pred C----CCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHh
Confidence 1 23689999999855432 4689999999762 110 01111111 1456666 6799
Q ss_pred CCCCcEEEEecCCCCCcCCchHHHHHHHHHHh-hCCceeEEEEecCccCCceeEEEE
Q 022451 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKYVVPYSAHIPSFADTWGWIMV 264 (297)
Q Consensus 209 L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~-~F~~v~~~~~~vp~~~~~~~~~~a 264 (297)
|+|||.+++..+. ... ..+.+.+.+ -|..+..+ +.+.+...++++
T Consensus 228 Lk~gG~l~~e~g~----~~~---~~~~~~l~~~gf~~v~~~----~d~~~~~r~~~~ 273 (275)
T PRK09328 228 LKPGGWLLLEIGY----DQG---EAVRALLAAAGFADVETR----KDLAGRDRVVLG 273 (275)
T ss_pred cccCCEEEEEECc----hHH---HHHHHHHHhCCCceeEEe----cCCCCCceEEEE
Confidence 9999999997642 222 334444443 35554432 334444555554
No 39
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.35 E-value=1.8e-11 Score=115.80 Aligned_cols=130 Identities=16% Similarity=0.185 Sum_probs=102.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
.....+|+||||+|..+..+++..|...+++||+++.+++.|.+.....+ -++++++.+|++.++.. .++.+|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCCCCceeEE
Confidence 34568999999999999999987778899999999999999988765442 35799999999876543 35789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
++..++||...+...+...+|++. +.+.|+|||.+.+.+. ....+..+...+.+.
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD------~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTD------SELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEE------CHHHHHHHHHHHHhC
Confidence 999889984433345667899999 8999999999999863 334555556665543
No 40
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=8.9e-12 Score=113.27 Aligned_cols=128 Identities=18% Similarity=0.236 Sum_probs=96.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...+|||+|||.|.++..+++..|..+|+.||+|...++.||++...+.. ++.+++.+|..+-+. ++||+|++
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~----~~~~v~~s~~~~~v~---~kfd~Iis 230 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV----ENTEVWASNLYEPVE---GKFDLIIS 230 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC----CccEEEEeccccccc---ccccEEEe
Confidence 34599999999999999999988889999999999999999999886631 233788888765543 38999999
Q ss_pred cCCCCCCCCC-ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 182 DLADPIEGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 182 D~~~~~~~~p-~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++|.+. +. ...-...++++. ++++|++||-|-+-... . ...-..|.+.|.++...
T Consensus 231 NPPfh~--G~~v~~~~~~~~i~~-A~~~L~~gGeL~iVan~-----~----l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 231 NPPFHA--GKAVVHSLAQEIIAA-AARHLKPGGELWIVANR-----H----LPYEKKLKELFGNVEVL 286 (300)
T ss_pred CCCccC--CcchhHHHHHHHHHH-HHHhhccCCEEEEEEcC-----C----CChHHHHHHhcCCEEEE
Confidence 998543 21 112234589999 89999999977554321 1 12346688899987654
No 41
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.4e-11 Score=109.19 Aligned_cols=128 Identities=22% Similarity=0.321 Sum_probs=105.1
Q ss_pred cCCCCCeEEEEccchhHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...+..+|++.|.|+|.++..++. ..+..+|+.+|+.++..+.|++++.... + .+++++..+|.++.... +.||
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l-~d~v~~~~~Dv~~~~~~--~~vD 165 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--L-GDRVTLKLGDVREGIDE--EDVD 165 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--c-ccceEEEeccccccccc--cccC
Confidence 346789999999999999999996 4566899999999999999999987542 2 35599999999988643 4899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYS 249 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~ 249 (297)
+|++|.++|| ++++. +++.|+|||.+++.. | .-++.+.....|++. |-+...+.
T Consensus 166 av~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P----~veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 166 AVFLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--P----TVEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred EEEEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--C----CHHHHHHHHHHHHhcCccchhhhe
Confidence 9999999988 66777 799999999999884 4 346778888888887 76655443
No 42
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=5.8e-12 Score=113.52 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++ .+++++.+|+.++. ..++||+|
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-----------~~~~~~~~d~~~~~--~~~~fD~v 93 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-----------RGVDARTGDVRDWK--PKPDTDVV 93 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-----------cCCcEEEcChhhCC--CCCCceEE
Confidence 356789999999999999999987667799999999999999986 24788999987663 34689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-++. + . -..+++. +.++|+|||.+++..
T Consensus 94 ~~~~~l~~~--~--d--~~~~l~~-~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 94 VSNAALQWV--P--E--HADLLVR-WVDELAPGSWIAVQV 126 (255)
T ss_pred EEehhhhhC--C--C--HHHHHHH-HHHhCCCCcEEEEEc
Confidence 998764441 2 1 1468888 799999999998864
No 43
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=7.6e-11 Score=107.85 Aligned_cols=155 Identities=21% Similarity=0.248 Sum_probs=105.3
Q ss_pred eCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEE
Q 022451 54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCD 133 (297)
Q Consensus 54 ~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VE 133 (297)
.-|-++|.-... .+|..+.++-.+....+|.....+.+. .... ..+++|||||||+|.++..+++..+..+|+++|
T Consensus 66 ~~P~~yi~g~~~-f~gl~~~v~~~vliPr~dTe~Lve~~l--~~~~-~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~D 141 (280)
T COG2890 66 GEPVAYILGSAE-FGGLRFKVDEGVLIPRPDTELLVEAAL--ALLL-QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVD 141 (280)
T ss_pred CCCHhHhhccCe-ecceeeeeCCCceecCCchHHHHHHHH--Hhhh-hcCCcEEEecCChHHHHHHHHhhCcCCeEEEEE
Confidence 334455544322 236777888777777777444444332 1111 122289999999999999999988888999999
Q ss_pred CCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC-CCCC----------CCCccCc-------
Q 022451 134 IDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIE----------GGPCYKL------- 195 (297)
Q Consensus 134 id~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~-~~~~----------~~p~~~L------- 195 (297)
+||..+++|+++...++. .++.++.+|.+.-+ .++||+|++++| -|.. ..|...|
T Consensus 142 is~~Al~~A~~Na~~~~l----~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl 214 (280)
T COG2890 142 ISPDALALARENAERNGL----VRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGL 214 (280)
T ss_pred CCHHHHHHHHHHHHHcCC----ccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHH
Confidence 999999999999876531 45667777765544 348999999997 2221 0110001
Q ss_pred -ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 196 -YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 196 -~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+.|+.. +.+.|+|||++++..+
T Consensus 215 ~~~~~i~~~-a~~~l~~~g~l~le~g 239 (280)
T COG2890 215 EVYRRILGE-APDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHHHh-hHHHcCCCcEEEEEEC
Confidence 23457777 7899999999999865
No 44
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.33 E-value=6.3e-11 Score=116.77 Aligned_cols=192 Identities=18% Similarity=0.273 Sum_probs=122.5
Q ss_pred eCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhc--------------------------CCCCCeEE
Q 022451 54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLH--------------------------HPNPKTIF 107 (297)
Q Consensus 54 ~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~--------------------------~~~~~~VL 107 (297)
.-|.|+|.-.... +|+-+.+|-.+-+..++. |.++...+.. ...+.+||
T Consensus 69 ~ePlqYI~G~~~F-~g~~f~V~~~VLIPRpeT----E~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VL 143 (506)
T PRK01544 69 HEPIAYITGVKEF-YSREFIVNKHVLIPRSDT----EVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNIL 143 (506)
T ss_pred CCCHHHHhCcCEE-cCcEEEeCCCcccCCCcH----HHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEE
Confidence 3466676654444 478889998888887663 3333222110 11356899
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-C
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-P 186 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~ 186 (297)
|+|||+|.++..+++..+..+|+++|+|+.+++.|++++...+ -.++++++.+|..+.+. .++||+|+++++- +
T Consensus 144 DlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~---l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 144 ELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE---VTDRIQIIHSNWFENIE--KQKFDFIVSNPPYIS 218 (506)
T ss_pred EccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC---CccceeeeecchhhhCc--CCCccEEEECCCCCC
Confidence 9999999999998876667899999999999999999876442 13589999999876552 3579999999862 1
Q ss_pred CC-----------CCCccCcc--------cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCcee
Q 022451 187 IE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 187 ~~-----------~~p~~~L~--------t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~ 246 (297)
.. ..|...|+ -+.+++. +.+.|+|||.+++..+ ..+. ..+.+.+.+. |..+.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig----~~q~---~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIG----FKQE---EAVTQIFLDHGYNIES 290 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEEC----CchH---HHHHHHHHhcCCCceE
Confidence 10 01111122 1234556 5789999999998754 2233 3444444443 44433
Q ss_pred EEEEecCccCCceeEEEEecC
Q 022451 247 PYSAHIPSFADTWGWIMVSIY 267 (297)
Q Consensus 247 ~~~~~vp~~~~~~~~~~as~~ 267 (297)
.+ +.+.+...+++++..
T Consensus 291 ~~----~D~~g~~R~v~~~~~ 307 (506)
T PRK01544 291 VY----KDLQGHSRVILISPI 307 (506)
T ss_pred EE----ecCCCCceEEEeccc
Confidence 22 344444555555433
No 45
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=3.7e-11 Score=111.34 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=103.7
Q ss_pred CCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEEC
Q 022451 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134 (297)
Q Consensus 55 s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEi 134 (297)
-|.|+|.-.... +|..+.++..+-+..++.....+.... .......+.+|||+|||+|.++..+++..+..+|+++|+
T Consensus 88 ~Pl~yi~g~~~F-~g~~f~v~~~vlipr~~te~lv~~~l~-~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDi 165 (307)
T PRK11805 88 IPAAYLTNEAWF-CGLEFYVDERVLVPRSPIAELIEDGFA-PWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDI 165 (307)
T ss_pred ccHHHHcCcceE-cCcEEEECCCCcCCCCchHHHHHHHHH-HHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeC
Confidence 456666543333 356677776554544432111111110 111111237899999999999999998777789999999
Q ss_pred CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCC----------CCCccCc--------
Q 022451 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKL-------- 195 (297)
Q Consensus 135 d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~----------~~p~~~L-------- 195 (297)
|+.+++.|++++...+ -..+++++.+|+.+.+. .++||+|++++|- +.. ..|...|
T Consensus 166 s~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~ 240 (307)
T PRK11805 166 SPDALAVAEINIERHG---LEDRVTLIESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLD 240 (307)
T ss_pred CHHHHHHHHHHHHHhC---CCCcEEEEECchhhhCC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHH
Confidence 9999999999986542 13579999999877653 3579999999762 110 0111111
Q ss_pred ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 196 YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 196 ~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+.+.+++. +.+.|+|||.+++..+
T Consensus 241 ~~~~i~~~-a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 241 LVRRILAE-APDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 12467777 6899999999999864
No 46
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=3.2e-11 Score=107.26 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=86.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||||-++..+.+..+..+|+++|+++.|++.|++...... ...++++++||.+ |.-.++.||+|.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~-LPf~D~sFD~vt 124 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAEN-LPFPDNSFDAVT 124 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhh-CCCCCCccCEEE
Confidence 47899999999999999999998778899999999999999999875321 1229999999865 556788999999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.-.-..... -...+++ +.|+|+|||++++..
T Consensus 125 ~~fglrnv~d------~~~aL~E-~~RVlKpgG~~~vle 156 (238)
T COG2226 125 ISFGLRNVTD------IDKALKE-MYRVLKPGGRLLVLE 156 (238)
T ss_pred eeehhhcCCC------HHHHHHH-HHHhhcCCeEEEEEE
Confidence 8754322111 2368888 899999999887664
No 47
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=1.5e-11 Score=110.82 Aligned_cols=107 Identities=21% Similarity=0.334 Sum_probs=83.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++....+ ..++++++.+|+.+......++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 46789999999999999999986 4689999999999999999875432 236899999999876444457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.+...| ..+++. +.+.|+|||++++..
T Consensus 118 ~~~vl~~~~~~------~~~l~~-~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADP------KSVLQT-LWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCH------HHHHHH-HHHHcCCCeEEEEEE
Confidence 87542221122 367888 799999999998653
No 48
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.32 E-value=3.1e-11 Score=113.38 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=92.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++ -..+++.+|+...+ .++||+|++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvs 267 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIIS 267 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEE
Confidence 3568999999999999999987777799999999999999999887553 23577888876543 468999999
Q ss_pred cCCCCCCCCCc-cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 182 D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
+++-+. +.. ..-...+|++. +.++|+|||.+.+-... +.. +. ..+.+.|+.+...
T Consensus 268 NPPFH~--g~~~~~~~~~~~i~~-a~~~LkpgG~L~iVan~---~l~---y~---~~l~~~Fg~~~~l 323 (342)
T PRK09489 268 NPPFHD--GIQTSLDAAQTLIRG-AVRHLNSGGELRIVANA---FLP---YP---DLLDETFGSHEVL 323 (342)
T ss_pred CCCccC--CccccHHHHHHHHHH-HHHhcCcCCEEEEEEeC---CCC---hH---HHHHHHcCCeEEE
Confidence 986433 111 11124688999 89999999988665422 111 11 3456678876544
No 49
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.32 E-value=1.2e-11 Score=111.43 Aligned_cols=101 Identities=18% Similarity=0.295 Sum_probs=82.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++ ++++++.+|+..+. ...+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence 4578999999999999999988766789999999999999999863 46889999987664 345899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++..-++. + -...+++. +.++|+|||.+++..
T Consensus 99 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 99 ANASLQWL--P----DHLELFPR-LVSLLAPGGVLAVQM 130 (258)
T ss_pred EccChhhC--C----CHHHHHHH-HHHhcCCCcEEEEEC
Confidence 98764441 1 12478898 799999999999874
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.31 E-value=1.1e-10 Score=104.36 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=84.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++...+ -++++++.+|+.+.+ ..++||+|+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~Vi 159 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPL--PGGKFDLIV 159 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccC--cCCceeEEE
Confidence 45679999999999999999987667899999999999999999876542 247999999987754 247899999
Q ss_pred EcCCCCCCCCC---ccCc-----------------ccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGP---CYKL-----------------YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p---~~~L-----------------~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++++-.....+ .... .-..+++. +.+.|+|||.+++..
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEI 217 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEE
Confidence 99862110000 0000 01357788 789999999999875
No 51
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.31 E-value=9.8e-11 Score=101.44 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|||+|||+|.++.++++..+..+|++||+||.+++.|++++...+ -++++++.+|+.+.+......+|.|+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence 45689999999999999998876566899999999999999999886442 24799999999775544334578888
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++... + -.++++. +.++|+|||.+++..
T Consensus 115 ~~~~~-----~-----~~~~l~~-~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IEGGR-----P-----IKEILQA-VWQYLKPGGRLVATA 142 (196)
T ss_pred EECCc-----C-----HHHHHHH-HHHhcCCCeEEEEEe
Confidence 86421 1 1477888 789999999999885
No 52
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.31 E-value=6.4e-11 Score=106.77 Aligned_cols=124 Identities=13% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
.+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..+ +++++.+|..+++.. ..++||+|+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEE
Confidence 346899999999999999987666679999999999999999987643 147899998877643 235799999
Q ss_pred EcCC-CCCC-----------CCCccCcc--------cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 181 GDLA-DPIE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 181 ~D~~-~~~~-----------~~p~~~L~--------t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
+|+| .+.. ..|...|. -+.+++. +.+.|+|||.+++..+. .....+...+++
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~~-------~~~~~v~~~l~~ 230 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETSE-------RQAPLAVEAFAR 230 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEECc-------chHHHHHHHHHH
Confidence 9986 2211 01100111 2466666 68999999999987532 233556666665
No 53
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=1.4e-10 Score=100.85 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=96.3
Q ss_pred cEEEEEeCCceeEEEE-cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHH
Q 022451 59 DIALLDTKPFGKALVI-DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 59 ~i~V~~~~~~g~~L~l-dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~ 137 (297)
.++|+.....|+.|.. ++... .+....-.+.+.. .+.......+|||+|||+|.++.+++... ..+|++||+|+.
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~--Rp~~d~v~e~l~~-~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGL--RPTTDRVRETLFN-WLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCc--CcCCHHHHHHHHH-HHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 4777777766776654 21111 1111111122221 11112356799999999999999876653 579999999999
Q ss_pred HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc--ccCCCCcEE
Q 022451 138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIF 215 (297)
Q Consensus 138 vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGvl 215 (297)
+++.+++++...+ -.+++++.+|+.+++....++||+|++|+|-.. + + ..+.++. +. ..|+|+|++
T Consensus 88 a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g----~-~~~~l~~-l~~~~~l~~~~iv 155 (199)
T PRK10909 88 VAQQLIKNLATLK----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G----L-LEETINL-LEDNGWLADEALI 155 (199)
T ss_pred HHHHHHHHHHHhC----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C----h-HHHHHHH-HHHCCCcCCCcEE
Confidence 9999999987653 247999999999988544457999999987311 1 1 2344444 33 458999999
Q ss_pred EEec
Q 022451 216 VTQA 219 (297)
Q Consensus 216 ~~~~ 219 (297)
++..
T Consensus 156 ~ve~ 159 (199)
T PRK10909 156 YVES 159 (199)
T ss_pred EEEe
Confidence 9885
No 54
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.30 E-value=2.1e-11 Score=109.55 Aligned_cols=108 Identities=17% Similarity=0.289 Sum_probs=82.0
Q ss_pred CCCCeEEEEccchhHHHHHHHh--cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
++..+|||||||+|..+..+++ ..+..++++||+++.|++.|++++.... ...+++++.+|+.+.. ...+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA---IENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC---CCCCCE
Confidence 5678999999999999988876 3467899999999999999999876432 1358999999976542 245999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-+.. .+ -....+++. +.+.|+|||.+++..
T Consensus 129 vv~~~~l~~l-~~---~~~~~~l~~-i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhC-CH---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 9887543221 11 012468898 799999999998864
No 55
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.29 E-value=9.4e-11 Score=111.21 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=90.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---CCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---~~~yD~ 178 (297)
.+++||++-|=||+.+.+++.. +..+||.||+|..+++.|++++.+++ +...+++++++|+++|++.. +.+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 4899999999999999998874 56799999999999999999999885 34578999999999999764 359999
Q ss_pred EEEcCCCCCCCCCccCcc--c---HHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLY--T---KSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~--t---~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||+|||.-.. ++ ..++ . .+.... +.+.|+|||++++-+++.
T Consensus 294 IilDPPsF~r-~k-~~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 294 IILDPPSFAR-SK-KQEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEECCccccc-Cc-ccchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCC
Confidence 9999984321 12 1221 1 123444 579999999999887654
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.29 E-value=7.7e-11 Score=100.60 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=88.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++||++|||+|.++..+.+..+ +|+++|+++.+++.+++++...+ .+++++.+|..+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-----VGLDVVMTDLFKGV---RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-----CceEEEEccccccc---CCcccEEE
Confidence 4567899999999999999998643 89999999999999999886542 46889999976643 35899999
Q ss_pred EcCCCCCCCCC-c--------------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 181 GDLADPIEGGP-C--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 181 ~D~~~~~~~~p-~--------------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
++++-...... . .......+++. +.+.|+|||.+++..... .....+...+++.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~~~~------~~~~~~~~~l~~~ 156 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQSSL------NGEPDTFDKLDER 156 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEEecc------CChHHHHHHHHhC
Confidence 99763211000 0 00113568888 799999999988764221 1134556666654
No 57
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.28 E-value=8.5e-12 Score=111.19 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||+|.++..+++. .+..+|+++|+++.|++.|++...... ..+++++.+|+.+ +.-.+++||+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~-lp~~d~sfD~ 119 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAED-LPFPDNSFDA 119 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHH-hcCCCCceeE
Confidence 356789999999999999999886 345799999999999999999876442 2489999999876 4445689999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-.. .+ . -...+++ +.|+|+|||.+++-.
T Consensus 120 v~~~fglrn--~~--d--~~~~l~E-~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 120 VTCSFGLRN--FP--D--RERALRE-MYRVLKPGGRLVILE 153 (233)
T ss_dssp EEEES-GGG---S--S--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEHHhhHHh--hC--C--HHHHHHH-HHHHcCCCeEEEEee
Confidence 998753211 11 1 2367888 899999999887653
No 58
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.27 E-value=3.8e-11 Score=106.27 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=83.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+++++|||+|||+|.++..+++. .+..+|+++|+++.+++.|++.+.... -++++++.+|+.+.. ...++||+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~-~~~~~fD~ 117 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG----LHNVELVHGNAMELP-FDDNSFDY 117 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEechhcCC-CCCCCccE
Confidence 345789999999999999999876 356799999999999999999875332 357999999987642 23578999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-.+ .+ . ..++++. +.+.|+|||.+++..
T Consensus 118 V~~~~~l~~--~~--~--~~~~l~~-~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 118 VTIGFGLRN--VP--D--YMQVLRE-MYRVVKPGGKVVCLE 151 (231)
T ss_pred EEEeccccc--CC--C--HHHHHHH-HHHHcCcCeEEEEEE
Confidence 998754322 11 1 2367888 799999999998654
No 59
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.27 E-value=7.3e-12 Score=94.31 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=73.7
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~ 186 (297)
||||||+|..+..+.++ +..+++++|+++.+++.+++... ..+++++.+|+..+ .-.++.||+|++...-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhC-cccccccccccccccee
Confidence 89999999999999998 67899999999999999999754 24567999998775 44578999999876532
Q ss_pred CCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+. + --..++++ +++.|||||.+++
T Consensus 72 ~~--~----~~~~~l~e-~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL--E----DPEAALRE-IYRVLKPGGRLVI 95 (95)
T ss_dssp GS--S----HHHHHHHH-HHHHEEEEEEEEE
T ss_pred ec--c----CHHHHHHH-HHHHcCcCeEEeC
Confidence 21 1 13478898 7999999999975
No 60
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.25 E-value=6.2e-11 Score=106.34 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=87.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc------
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------ 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~------ 172 (297)
...+++||+||++.|..+..+++. ++..+|+.+|+|++..+.|+++|...+ + .++++++.+|+.+.|...
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~-~~~I~~~~G~a~e~L~~l~~~~~~ 153 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDQMIEDGKY 153 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--C-CCceEEEeccHHHHHHHHHhcccc
Confidence 357899999999999999988864 456799999999999999999997543 1 379999999999988652
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.++||+||+|..- .. ..++|+. +.+.|+|||++++-
T Consensus 154 ~~~fD~iFiDadK--------~~-Y~~y~~~-~l~ll~~GGviv~D 189 (247)
T PLN02589 154 HGTFDFIFVDADK--------DN-YINYHKR-LIDLVKVGGVIGYD 189 (247)
T ss_pred CCcccEEEecCCH--------HH-hHHHHHH-HHHhcCCCeEEEEc
Confidence 2689999999741 11 2478888 68999999999864
No 61
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.25 E-value=5.5e-10 Score=100.57 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=100.0
Q ss_pred eEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc
Q 022451 70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (297)
Q Consensus 70 ~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~ 149 (297)
..+.+|..+...... ..-..++..........+++|||+|||+|.++..+.+.. ..+|+++|+||.+++.|++++..+
T Consensus 88 ~~i~i~p~~afgtg~-h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 88 INIELDPGMAFGTGT-HPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred EEEEECCCCccCCCC-CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc
Confidence 456677655443211 112223322211123568899999999999998887753 457999999999999999998755
Q ss_pred cCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCch
Q 022451 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTE 229 (297)
Q Consensus 150 ~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~ 229 (297)
+. ..++.+..+|. +||+|+.+.... . -..+++. +.++|+|||.+++... ...
T Consensus 166 ~~---~~~~~~~~~~~---------~fD~Vvani~~~-------~--~~~l~~~-~~~~LkpgG~lilsgi------~~~ 217 (250)
T PRK00517 166 GV---ELNVYLPQGDL---------KADVIVANILAN-------P--LLELAPD-LARLLKPGGRLILSGI------LEE 217 (250)
T ss_pred CC---CceEEEccCCC---------CcCEEEEcCcHH-------H--HHHHHHH-HHHhcCCCcEEEEEEC------cHh
Confidence 31 13444444432 799999875421 1 1367777 7899999999998642 122
Q ss_pred HHHHHHHHHHhh-CCceeEEEEecCccCCceeEEEEec
Q 022451 230 VFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMVSI 266 (297)
Q Consensus 230 ~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~as~ 266 (297)
....+...+++. |..+.... .+.|..+++.+
T Consensus 218 ~~~~v~~~l~~~Gf~~~~~~~------~~~W~~~~~~~ 249 (250)
T PRK00517 218 QADEVLEAYEEAGFTLDEVLE------RGEWVALVGKK 249 (250)
T ss_pred hHHHHHHHHHHCCCEEEEEEE------eCCEEEEEEEe
Confidence 345666667665 44332211 23477666554
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.25 E-value=1.7e-10 Score=105.54 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCCCeEEEEccchhHHH-HHHH-hcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGSTA-REIL-RHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~-~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..|++|++||||.|.++ ..++ ++.+..+++++|+|+++++.||+.+.. .+ -.++++|+.+|+.+... ..++||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g---L~~rV~F~~~Da~~~~~-~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD---LSKRMFFHTADVMDVTE-SLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC---ccCCcEEEECchhhccc-ccCCcC
Confidence 47899999999977443 3333 466788999999999999999999853 22 14789999999987532 246799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++++-..+... .-.+.++. +.++|+|||++++..
T Consensus 198 lVF~~ALi~~dk~-----~k~~vL~~-l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKE-----EKVKVIEH-LGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEecccccccc-----cHHHHHHH-HHHhcCCCcEEEEec
Confidence 9999954333111 12478888 799999999999885
No 63
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.25 E-value=4.1e-11 Score=108.61 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=81.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||+|||+|.++..+.+.. +..+|++||+++.|++.|++....... ...++++++.+|+.+. .-.++.||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence 457899999999999998888753 456999999999999999876542110 0235899999998653 3345689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-+. .+ . -..++++ +.++|+|||.+++-.
T Consensus 150 ~~~~~l~~--~~--d--~~~~l~e-i~rvLkpGG~l~i~d 182 (261)
T PLN02233 150 TMGYGLRN--VV--D--RLKAMQE-MYRVLKPGSRVSILD 182 (261)
T ss_pred EEeccccc--CC--C--HHHHHHH-HHHHcCcCcEEEEEE
Confidence 98654322 11 1 2478899 899999999987653
No 64
>PLN02672 methionine S-methyltransferase
Probab=99.25 E-value=2.7e-10 Score=119.60 Aligned_cols=171 Identities=18% Similarity=0.144 Sum_probs=110.5
Q ss_pred eeEEEEcCccccccCChhhHHHHHHHHHHhcCC----CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 022451 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHP----NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (297)
Q Consensus 69 g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~----~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (297)
|..|.++..+-+..++ +|.++.. +..++ .+++|||||||+|.++..+++..+..+|+++|+|+++++.|++
T Consensus 86 ~l~~~V~p~VLIPRpe----TE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 86 KLTMMEIPSIFIPEDW----SFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred CCceeeCCCcccCchh----HHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 4455666655566554 3333322 21122 2468999999999999999987667899999999999999999
Q ss_pred hhhhccCC------------CCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCC-----------CCC---------
Q 022451 145 YLVVNKEA------------FSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE-----------GGP--------- 191 (297)
Q Consensus 145 ~f~~~~~~------------~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~-----------~~p--------- 191 (297)
+...+... ...+|++++.+|..+.+.....+||+|+++++- +.. ..|
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 98654210 012479999999988774333479999999971 110 011
Q ss_pred ccCccc-----------HHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHH-HHHHHHHhhCCceeEEEEe
Q 022451 192 CYKLYT-----------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFS-CIYNTLRQVFKYVVPYSAH 251 (297)
Q Consensus 192 ~~~L~t-----------~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~-~i~~~l~~~F~~v~~~~~~ 251 (297)
...|.. +.+++. +.++|+|||.++++.+. .+.+.+. +++.. .-|..+..|...
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~-a~~~L~pgG~l~lEiG~----~q~~~v~~~l~~~--~gf~~~~~~~~~ 305 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEE-GISVIKPMGIMIFNMGG----RPGQAVCERLFER--RGFRITKLWQTK 305 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHH-HHHhccCCCEEEEEECc----cHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence 112222 445555 57899999999999762 2333333 23332 237777777643
No 65
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.25 E-value=1.1e-11 Score=95.88 Aligned_cols=96 Identities=24% Similarity=0.427 Sum_probs=71.2
Q ss_pred EEEEccchhHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE-
Q 022451 106 IFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG- 181 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~- 181 (297)
||++|||+|..++.+.+.. +..++++||+|+++++.+++++... ..+++++++|+.++ ....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l-~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDL-PFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHC-cccCCCeeEEEEc
Confidence 7999999999999999864 3479999999999999999987643 25899999999774 445679999999
Q ss_pred cC-CCCCCCCCccCcccHHHHHHHHcccCCCCc
Q 022451 182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (297)
Q Consensus 182 D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG 213 (297)
.. .... .+ ---..+++. +.++|+|||
T Consensus 75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHL--SP---EELEALLRR-IARLLRPGG 101 (101)
T ss_dssp TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence 33 2211 11 112468888 799999998
No 66
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.25 E-value=1.2e-10 Score=118.95 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=89.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++||++|||+|+++..+++. +..+|++||+|+.+++.|++++..++ +...+++++.+|+.++++...++||+|+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEE
Confidence 35789999999999999999985 46689999999999999999998764 2235899999999999875567899999
Q ss_pred EcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 181 GDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++.-......... .-.++++. +.++|+|||++++.+++
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeCC
Confidence 998732110000010 11345666 67899999999887643
No 67
>PLN02244 tocopherol O-methyltransferase
Probab=99.23 E-value=4.6e-11 Score=112.28 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=82.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|++||+++.+++.|++.....+ ..++++++.+|+.+. ...+++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC-CCCCCCccEEE
Confidence 457899999999999999999865 5699999999999999998765332 135799999998663 23457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...... .+ -...++++ +.++|+|||.+++..
T Consensus 192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence 8644222 11 12478899 899999999998754
No 68
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.23 E-value=7.5e-11 Score=105.62 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=97.7
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHh-ccC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELE-SRK 173 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~-~~~ 173 (297)
.+...++.+||+.|.|+|+++..+++ ..|..+|...|+.++..+.|+++|...+ -..++++++.|..+ -.. ...
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~~Dv~~~g~~~~~~ 111 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHHRDVCEEGFDEELE 111 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEES-GGCG--STT-T
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEecceeccccccccc
Confidence 33457889999999999999999997 3567899999999999999999998653 24689999999853 221 224
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccC-CCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYS 249 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~ 249 (297)
..+|.|++|+++||. .+.. +.+.| ++||+++... | .-++..+....|++. |..+..+.
T Consensus 112 ~~~DavfLDlp~Pw~-----------~i~~-~~~~L~~~gG~i~~fs--P----~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWE-----------AIPH-AKRALKKPGGRICCFS--P----CIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp TSEEEEEEESSSGGG-----------GHHH-HHHHE-EEEEEEEEEE--S----SHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CcccEEEEeCCCHHH-----------HHHH-HHHHHhcCCceEEEEC--C----CHHHHHHHHHHHHHCCCeeeEEEE
Confidence 679999999999883 3445 68899 8999999884 4 456778888888874 77665553
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=99.22 E-value=6.1e-10 Score=98.49 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+ .+++++.+|....+. .++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEE
Confidence 44579999999999999998876 34699999999999999999876442 358899999877543 46899999
Q ss_pred EcCCCC-CCCC------Cc--------cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADP-IEGG------PC--------YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~-~~~~------p~--------~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++++-. .... +. ....-..+++. +.+.|+|||.+++..
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLVQ 159 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 997521 1000 00 00012357777 789999999998753
No 70
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=5.1e-10 Score=102.89 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=88.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..+. -..++.++.+|... ...++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~~~~---~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIYLEQ---PIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEeccccc---ccCCCceEEE
Confidence 45689999999999999888875 45799999999999999999987653 13467777776322 2346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY 244 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~ 244 (297)
++.... . -.+++.. +.+.|+|||.+++..- .......+...+++.|.-
T Consensus 231 an~~~~-------~--l~~ll~~-~~~~LkpgG~li~sgi------~~~~~~~v~~~~~~~f~~ 278 (288)
T TIGR00406 231 ANILAE-------V--IKELYPQ-FSRLVKPGGWLILSGI------LETQAQSVCDAYEQGFTV 278 (288)
T ss_pred EecCHH-------H--HHHHHHH-HHHHcCCCcEEEEEeC------cHhHHHHHHHHHHccCce
Confidence 986421 1 1367888 7999999999988631 223445666666665543
No 71
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.21 E-value=5.9e-11 Score=110.49 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=80.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+.+|||||||+|.++..+++. ..+|++||+++++++.|+++..... ...+++++.+|+.++- ...++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~-~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA-DEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh-hccCCCCEEEE
Confidence 4568999999999999988864 4689999999999999998865331 1357999999987653 34578999998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...-.....+ .+|++. ++++|+|||.+++.+
T Consensus 205 ~~vLeHv~d~------~~~L~~-l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHVANP------AEFCKS-LSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhcCCH------HHHHHH-HHHHcCCCcEEEEEE
Confidence 6432211122 378898 899999999998775
No 72
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.2e-10 Score=101.01 Aligned_cols=103 Identities=24% Similarity=0.278 Sum_probs=84.0
Q ss_pred hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
+...++.+||+||||+|..+..+++.. .+|+.||+++...+.|++++...+ -.+|.++++|+..-... ..+||
T Consensus 68 L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD 140 (209)
T COG2518 68 LELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYD 140 (209)
T ss_pred hCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcC
Confidence 344678999999999999999999874 499999999999999999987553 35699999999877643 47899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.|++.+..+. .|. . +.+.|++||++++-.+
T Consensus 141 ~I~Vtaaa~~--vP~----------~-Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAAAPE--VPE----------A-LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEEeeccCC--CCH----------H-HHHhcccCCEEEEEEc
Confidence 9999987554 341 1 4578999999998765
No 73
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.21 E-value=4.5e-11 Score=105.19 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=79.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-..++|||+|||+|.++..+++.. .+|+++|++++.++.|+.+-.... -.+++......+.... .++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~~-~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLASA-GGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHhc-CCCccEEE
Confidence 367899999999999999999863 899999999999999999865432 2355777776665543 48999999
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+--- .+. ..| ..|++. |.+++||||++++.+
T Consensus 130 cmEVlEHv-~dp------~~~~~~-c~~lvkP~G~lf~ST 161 (243)
T COG2227 130 CMEVLEHV-PDP------ESFLRA-CAKLVKPGGILFLST 161 (243)
T ss_pred EhhHHHcc-CCH------HHHHHH-HHHHcCCCcEEEEec
Confidence 8643 221 122 258888 799999999999876
No 74
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.21 E-value=1.7e-10 Score=101.25 Aligned_cols=127 Identities=20% Similarity=0.333 Sum_probs=89.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--Hh-----cc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LE-----SR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~-----~~ 172 (297)
.++.+|||||||+|.++..+++.. +..+|++||+++. . ..++++++++|+... +. ..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 567799999999999999998864 3469999999981 0 125689999998763 11 13
Q ss_pred CCCceEEEEcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
.++||+|++|....+...+.... .....++. +.+.|+|||.+++.. ...+.+..++..+++.|..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~------~~~~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV------FQGEGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE------ecCcCHHHHHHHHHhCceEEEE
Confidence 56899999997533211111000 12457788 799999999999863 2334567778889999998876
Q ss_pred EE
Q 022451 248 YS 249 (297)
Q Consensus 248 ~~ 249 (297)
+.
T Consensus 188 ~K 189 (209)
T PRK11188 188 RK 189 (209)
T ss_pred EC
Confidence 53
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.1e-10 Score=102.05 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=78.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+..+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...+ ...+++++.+|+.+.+.. ..+||+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~I 146 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG---YWGVVEVYHGDGKRGLEK-HAPFDAI 146 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEECCcccCCcc-CCCccEE
Confidence 456799999999999998887753 24689999999999999999886442 124699999999775543 4689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++...+. +.+. +.+.|+|||.|++..
T Consensus 147 i~~~~~~~------------~~~~-l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAAST------------IPSA-LVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcch------------hhHH-HHHhcCcCcEEEEEE
Confidence 99865321 1234 578899999998864
No 76
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.21 E-value=1.6e-10 Score=103.10 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=81.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
++..+|||||||+|..+..+++. .+..+++++|+++.|++.|++++.... ...+++++.+|+.++- ...+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence 46679999999999999988875 356899999999999999999875321 2357999999987652 245899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-++ .+.. --..+++. +.+.|+|||.+++..
T Consensus 126 v~~~~~l~~--~~~~--~~~~~l~~-i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQF--LPPE--DRIALLTK-IYEGLNPNGVLVLSE 161 (239)
T ss_pred Eeeecchhh--CCHH--HHHHHHHH-HHHhcCCCeEEEEee
Confidence 887654332 1100 12478899 899999999998874
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.21 E-value=8.5e-11 Score=103.38 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=79.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||||||+|..+..+++..+ ..+|++||+++.+++.|++++...+ -++++++.+|+.+.+.. ..+||+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~~-~~~fD~ 149 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWEP-LAPYDR 149 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCcc-cCCCCE
Confidence 35678999999999999998887643 4579999999999999999887542 25799999998765432 368999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+++...+. + .+. +.+.|+|||++++..
T Consensus 150 Ii~~~~~~~-------~-----~~~-~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPK-------I-----PEA-LIDQLKEGGILVMPV 177 (215)
T ss_pred EEEcCCccc-------c-----cHH-HHHhcCcCcEEEEEE
Confidence 999864321 1 133 567899999998864
No 78
>PRK04266 fibrillarin; Provisional
Probab=99.20 E-value=5.6e-10 Score=99.06 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=88.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l--~~~~~~yD 177 (297)
..+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++.... .+++.++.+|+.... ....++||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCC
Confidence 3567799999999999999999865456899999999999877665331 257899999986421 11135699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC-CCCcC--CchHHHHHHHHHHhh-CCcee
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP-AGIFS--HTEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~-p~~~~--~~~~~~~i~~~l~~~-F~~v~ 246 (297)
+|++|..+|+ . ...+++. +++.|+|||.+++.... +-.+. ....++...+.+++. |..+.
T Consensus 144 ~i~~d~~~p~--~------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 144 VIYQDVAQPN--Q------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred EEEECCCChh--H------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 9999876543 1 1245677 78999999999884210 00011 123344455667665 66543
No 79
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=5.1e-10 Score=108.81 Aligned_cols=117 Identities=21% Similarity=0.157 Sum_probs=86.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+.....++||+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKFAEKFDK 323 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchhcccCCE
Confidence 3556899999999999999988753 46799999999999999999886542 135999999998764322367999
Q ss_pred EEEcCCCCCC----CCCcc-------Cc-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 179 IIGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 179 Ii~D~~~~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|++|++-... ..|.. .+ ...++++. +.+.|+|||.++..+++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystcs 381 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcCC
Confidence 9999862110 01100 00 12467888 78999999999877653
No 80
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.19 E-value=1.7e-09 Score=98.11 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=95.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||.|+.+..+++.. +...|+++|+++.+++.+++++...+ -.+++++.+|++.+.. ..++||.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~ 143 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDA 143 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCE
Confidence 3456899999999999998887753 24589999999999999999987543 2469999999987643 2356999
Q ss_pred EEEcCCCCCC----CCCcc-------Cc-----ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 179 IIGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 179 Ii~D~~~~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
|++|++-... ..|.. .+ ...++++. +.+.|+|||+|+..+++- ..+.-+.+++.+-+.+
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs~----~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCSL----EPEENEAVVDYLLEKR 218 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCCC----ChHHHHHHHHHHHHhC
Confidence 9999872211 11110 00 12457777 789999999998776542 3344456666666666
Q ss_pred Cce
Q 022451 243 KYV 245 (297)
Q Consensus 243 ~~v 245 (297)
+..
T Consensus 219 ~~~ 221 (264)
T TIGR00446 219 PDV 221 (264)
T ss_pred CCc
Confidence 653
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=1.3e-10 Score=102.23 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=79.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+..+||+||||+|.++..+++.. +..+|+++|+++++++.|++++...+ -.+++++.+|+..... ...+||+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~ 148 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDR 148 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCE
Confidence 3567899999999999998888753 34699999999999999999886442 2579999999876443 3468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+++...+. ..+. +.+.|+|||.+++..
T Consensus 149 I~~~~~~~~------------~~~~-l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGPD------------IPKP-LIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCCccc------------chHH-HHHhhCCCcEEEEEE
Confidence 999864221 1234 567899999998864
No 82
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.18 E-value=5e-12 Score=97.18 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=59.8
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLAD 185 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~ 185 (297)
|+||||+|.++..+++..+..+++++|+|+.+++.|++.+.... ..+......+..+.... ..++||+|++...-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999999999998788999999999999999988876432 12223333222222222 22589999987654
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEE
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl 215 (297)
++. + .-.++++. +++.|+|||+|
T Consensus 77 ~~l--~----~~~~~l~~-~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--E----DIEAVLRN-IYRLLKPGGIL 99 (99)
T ss_dssp S----S-----HHHHHHH-HTTT-TSS-EE
T ss_pred hhh--h----hHHHHHHH-HHHHcCCCCCC
Confidence 331 1 12478998 89999999986
No 83
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.18 E-value=1.4e-10 Score=100.80 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=78.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.|++...... -.+++++..|..++- ..++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNLT--FDGEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhCC--cCCCcCEEE
Confidence 45689999999999999999985 4689999999999999998765432 245889999976542 245799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+...-++. .+ -....+++. +.+.|+|||.+++
T Consensus 101 ~~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence 87543221 11 113478888 8999999998543
No 84
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.18 E-value=5.4e-10 Score=95.87 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=92.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+.-.++|++|||.|.++..|+.+. .+++++|+++..++.||+.+.. -++|+++..|..++. +.++||+
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FDL 109 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFDL 109 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEE
T ss_pred CccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCeeE
Confidence 34566899999999999999999875 6899999999999999998753 278999999988775 4579999
Q ss_pred EEEcCCCCCCCCCccCcccH----HHHHHHHcccCCCCcEEEEecCCC---CCcCCchHHHHHHHHHHhhCCceeEEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTK----SFYEFVVKPRLNPEGIFVTQAGPA---GIFSHTEVFSCIYNTLRQVFKYVVPYSA 250 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~----ef~~~~~~~~L~pgGvl~~~~~~p---~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (297)
|++.-. ...|-.. .+.+. +.+.|+|||.|++-.-.. ..|.+....+.+...+.+.+-.+.-...
T Consensus 110 IV~SEV-------lYYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~ 180 (201)
T PF05401_consen 110 IVLSEV-------LYYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC 180 (201)
T ss_dssp EEEES--------GGGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred EEEehH-------hHcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence 998732 1222222 35666 679999999998764110 0134555678888899999888765543
No 85
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.17 E-value=1.7e-10 Score=103.57 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=77.4
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+.+|||||||+|.++..+.+. ..+++++|+++.+++.|++... ...++.+|+... ...+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~-~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL-PLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC-cCCCCcEEEEEE
Confidence 5689999999999999888774 4789999999999999998632 246788897653 234568999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+..-.+... -.+++.. +.+.|+|||.+++.+
T Consensus 110 ~~~l~~~~d------~~~~l~~-~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGN------LSTALRE-LYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcCC------HHHHHHH-HHHHcCCCeEEEEEe
Confidence 876444212 2377888 799999999998875
No 86
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.17 E-value=4.7e-10 Score=96.54 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=85.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-----Hh--cc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LE--SR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-----l~--~~ 172 (297)
.++.+|||||||+|.++..+++.. +..+|+++|+++.+ . .++++++.+|..+. +. ..
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 567899999999999998888753 45689999999864 1 14578888887542 11 12
Q ss_pred CCCceEEEEcCCCCCCCCCc-cCcc----cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~-~~L~----t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
.++||+|++|...+....+. ..+. ...+++. +.+.|+|||.+++... ..+.+..++..+++.|..+..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~------~~~~~~~~l~~l~~~~~~~~~ 168 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVF------QGEEIDEYLNELRKLFEKVKV 168 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEc------cCccHHHHHHHHHhhhceEEE
Confidence 45799999986422111110 0111 1467888 7999999999998642 223456777888888866554
Q ss_pred E
Q 022451 248 Y 248 (297)
Q Consensus 248 ~ 248 (297)
+
T Consensus 169 ~ 169 (188)
T TIGR00438 169 T 169 (188)
T ss_pred e
Confidence 4
No 87
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.17 E-value=9.8e-11 Score=103.16 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=80.2
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
++||+||||+|..+..+++..+..+++++|+++.+++.|++++...+ -.++++++..|..... ..++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~~--~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKDP--FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccCC--CCCCCCEeehHH
Confidence 47999999999999999887666799999999999999999876432 2368999999974431 235799999754
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.-.. .+ . ...+++. +++.|+|||.+++..
T Consensus 76 ~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHH--IK--D--KMDLFSN-ISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHh--CC--C--HHHHHHH-HHHHcCCCCEEEEEE
Confidence 3221 11 1 2478999 899999999998764
No 88
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.16 E-value=3.3e-10 Score=103.54 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=83.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~ 178 (297)
...++||++-|=+|+.+..++.. +..+|+.||++..+++.|++++.+++ ++..+++++.+|++++++. ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 46789999999999999988874 57799999999999999999998875 3446899999999999864 3569999
Q ss_pred EEEcCCCCCCCCCccCcccH---HHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~---ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||+|+|.-.. +. ..+ .+ +.+.. +.+.|+|||.|++.++++
T Consensus 199 IIlDPPsF~k-~~-~~~-~~~y~~L~~~-a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 199 IILDPPSFAK-SK-FDL-ERDYKKLLRR-AMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEE--SSEES-ST-CEH-HHHHHHHHHH-HHHTEEEEEEEEEEE--T
T ss_pred EEECCCCCCC-CH-HHH-HHHHHHHHHH-HHHhcCCCCEEEEEcCCc
Confidence 9999984211 11 111 22 34555 569999999998887766
No 89
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.16 E-value=3.1e-10 Score=98.53 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=96.8
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceEEEEc
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~Ii~D 182 (297)
-+|+||||.|..+.++++..|...+.+||+....+..|.+..... .-+|+.++.+||..++.. .++..|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 789999999999999998878999999999999999988876543 247999999999988764 35789999999
Q ss_pred CCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 183 ~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
-+|||-... ...|.+.+|++. +.++|+|||.+.+.+. ....+..+...+.+.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence 999983221 247899999999 8999999999998863 455667777777764
No 90
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=1.8e-09 Score=104.43 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=85.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
..++.+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++...+ .+++++.+|+...... ..++||.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCE
Confidence 456789999999999999999987554799999999999999999886542 2478999999764321 2467999
Q ss_pred EEEcCCCC-C---CCCCccC-cc-----------cHHHHHHHHcccCCCCcEEEEecCC
Q 022451 179 IIGDLADP-I---EGGPCYK-LY-----------TKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 179 Ii~D~~~~-~---~~~p~~~-L~-----------t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|++|++-. . ...|... .. -.++++. +.+.|+|||.++..+++
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystcs 374 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATCS 374 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC
Confidence 99999732 1 0111100 01 1357777 78999999999988754
No 91
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.15 E-value=2.8e-10 Score=100.37 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=82.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++||+||||+|.++..+++..+..+++++|+++.+++.+++.+. ++++++.+|..+.. ..+++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence 44679999999999999999987777789999999999999988643 47889999987643 2356899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-++... ...+++. +++.|+|||.+++..
T Consensus 104 ~~~~l~~~~~------~~~~l~~-~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCDD------LSQALSE-LARVLKPGGLLAFST 135 (240)
T ss_pred EhhhhhhccC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 9865443211 2368888 799999999998864
No 92
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=1.5e-09 Score=105.13 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=95.9
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++.+|||+|||+|+.+..++... +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+-....++||
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCC
Confidence 34567899999999999998888753 45799999999999999999976442 24589999999875433346799
Q ss_pred EEEEcCCCCCCC----CCcc-------C---c--ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 178 VIIGDLADPIEG----GPCY-------K---L--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 178 ~Ii~D~~~~~~~----~p~~-------~---L--~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.|++|++-...+ .|.. . + ...+.+.. +.+.|+|||+++..+++. ..+....+++.+-+.
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~----~~eEne~vv~~fl~~ 384 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV----TKEENTEVVKRFVYE 384 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC----ChhhCHHHHHHHHHh
Confidence 999998732111 1100 0 0 12456777 689999999998887643 233344555544445
Q ss_pred CCce
Q 022451 242 FKYV 245 (297)
Q Consensus 242 F~~v 245 (297)
+|..
T Consensus 385 ~~~~ 388 (431)
T PRK14903 385 QKDA 388 (431)
T ss_pred CCCc
Confidence 5554
No 93
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.12 E-value=3.5e-10 Score=102.65 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=80.5
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++.+.. .++++++.+|+.+. .-.+++||+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~ 120 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDM 120 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEE
Confidence 34567899999999999998887754 46899999999999999987542 26799999997542 223468999
Q ss_pred EEEc-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++. ...+. +.. -...+++. +.+.|+|||.+++..
T Consensus 121 V~s~~~l~h~---~~~--d~~~~l~~-i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 121 IYSRDAILHL---SYA--DKKKLFEK-CYKWLKPNGILLITD 156 (263)
T ss_pred EEEhhhHHhC---CHH--HHHHHHHH-HHHHcCCCcEEEEEE
Confidence 9984 32221 100 12468888 799999999998864
No 94
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.12 E-value=5.1e-10 Score=101.71 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=80.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||||||+|..+..+++. .+..+|+++|+++.+++.|++++.... -++++++.+|+.+ +...++.||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~-l~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEA-LPVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhh-CCCCCCceeEE
Confidence 56789999999999988776664 334589999999999999999865432 2588999999755 33335689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+++..-.. .+ -....++. +.+.|+|||.+++.
T Consensus 151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 98865322 11 12467888 79999999999875
No 95
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.7e-09 Score=91.16 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=101.3
Q ss_pred EEEEEeCCceeEE-EEcCccccccCChhhHHHHHHHHHHhc-CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHH
Q 022451 60 IALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLH-HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 60 i~V~~~~~~g~~L-~ldg~~q~~~~d~~~y~e~l~~~~l~~-~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~ 137 (297)
++|+.-+..||.| +.+|.- +.|..-.-.|.+... +.. .-...++||+-+|+|+++.+++.+ +..+++.||.|..
T Consensus 2 mRIi~G~~kgr~L~~p~~~~--~RPT~drVREalFNi-l~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~ 77 (187)
T COG0742 2 MRIIGGKYKGRKLKTPDGPG--TRPTTDRVREALFNI-LAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRK 77 (187)
T ss_pred eEEEeccccCCcccCCCCCC--cCCCchHHHHHHHHh-ccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHH
Confidence 3455555556655 445421 111111234454421 222 256889999999999999999986 5789999999999
Q ss_pred HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCC--ceEEEEcCCCCCCCCCccCcc--cHHHHHHHHcccCCCCc
Q 022451 138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YDVIIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEG 213 (297)
Q Consensus 138 vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~--yD~Ii~D~~~~~~~~p~~~L~--t~ef~~~~~~~~L~pgG 213 (297)
+..+.+++....+ ...+.+++..|+..+|+....+ ||+|++|+|-.. .+. ...+....-...|+|+|
T Consensus 78 a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 78 AVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAK------GLLDKELALLLLEENGWLKPGA 148 (187)
T ss_pred HHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCcc------chhhHHHHHHHHHhcCCcCCCc
Confidence 9999999987442 2478999999999998776555 999999997532 222 12222210257899999
Q ss_pred EEEEecC
Q 022451 214 IFVTQAG 220 (297)
Q Consensus 214 vl~~~~~ 220 (297)
.+++...
T Consensus 149 ~iv~E~~ 155 (187)
T COG0742 149 LIVVEHD 155 (187)
T ss_pred EEEEEeC
Confidence 9999863
No 96
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.11 E-value=3.3e-10 Score=103.28 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=75.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||.|+++..+++.+ ..+|++|.++++..+.|++.+...+ -..++++...|.+++ +.+||.|
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g---l~~~v~v~~~D~~~~----~~~fD~I 131 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG---LEDRVEVRLQDYRDL----PGKFDRI 131 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST---SSSTEEEEES-GGG-------S-SEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEeecccc----CCCCCEE
Confidence 4678899999999999999999976 4799999999999999999876443 136899999997654 3489998
Q ss_pred EEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++--. .+. ++ -.-..||+. +.+.|+|||.++++.
T Consensus 132 vSi~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 132 VSIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred EEEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 87532 222 11 123589999 899999999999885
No 97
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=2e-09 Score=104.66 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=93.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+. ...+||+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~--~~~~fD~ 321 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS--PEEQPDA 321 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc--cCCCCCE
Confidence 3456899999999999988877643 34689999999999999999886442 146999999998765 3467999
Q ss_pred EEEcCCCCCC----CCCcc--Cc----------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 179 IIGDLADPIE----GGPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 179 Ii~D~~~~~~----~~p~~--~L----------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
|++|++-... ..|.. .+ ...+++.. +.+.|+|||+++..+++. ..+..+..++.+-+.+
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~----~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI----EPEENELQIEAFLQRH 396 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhHHHHHHHHHHhC
Confidence 9999862111 01100 01 12357888 789999999999988653 2233344444444444
Q ss_pred Cc
Q 022451 243 KY 244 (297)
Q Consensus 243 ~~ 244 (297)
+.
T Consensus 397 ~~ 398 (445)
T PRK14904 397 PE 398 (445)
T ss_pred CC
Confidence 44
No 98
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=3.2e-10 Score=104.20 Aligned_cols=136 Identities=19% Similarity=0.250 Sum_probs=90.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++++|||+|||+|.++..+++. +..+|+++|+||..++.|+++...++. ..++.+.. ..+. ...+||+|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~---~~~~~v~~--~~~~---~~~~~dlv 229 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGV---EDRIEVSL--SEDL---VEGKFDLV 229 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT----TTCEEESC--TSCT---CCS-EEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCC---CeeEEEEE--eccc---ccccCCEE
Confidence 356789999999999999999987 578999999999999999999988752 23665531 1111 23889999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCce
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTW 259 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~ 259 (297)
+.+.... -| .+.... +.++|+|||.|++..- -.+....+.+.+++-|.-+.. . ..+.|
T Consensus 230 vANI~~~-------vL--~~l~~~-~~~~l~~~G~lIlSGI------l~~~~~~v~~a~~~g~~~~~~-----~-~~~~W 287 (295)
T PF06325_consen 230 VANILAD-------VL--LELAPD-IASLLKPGGYLILSGI------LEEQEDEVIEAYKQGFELVEE-----R-EEGEW 287 (295)
T ss_dssp EEES-HH-------HH--HHHHHH-CHHHEEEEEEEEEEEE------EGGGHHHHHHHHHTTEEEEEE-----E-EETTE
T ss_pred EECCCHH-------HH--HHHHHH-HHHhhCCCCEEEEccc------cHHHHHHHHHHHHCCCEEEEE-----E-EECCE
Confidence 9997531 12 245666 6899999999998631 123445666777553332211 1 13457
Q ss_pred eEEEEec
Q 022451 260 GWIMVSI 266 (297)
Q Consensus 260 ~~~~as~ 266 (297)
.-+.+.|
T Consensus 288 ~~l~~~K 294 (295)
T PF06325_consen 288 VALVFKK 294 (295)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7666554
No 99
>PHA03411 putative methyltransferase; Provisional
Probab=99.10 E-value=1.7e-09 Score=97.90 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...+|||+|||+|.++..+++..+..+|++||+|+.+++.|++.+ ++++++.+|++++.. .++||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence 457999999999999988887654579999999999999999853 468999999998753 468999999
Q ss_pred cCCCCCC-CC--CccCcc-----------cHHHHHHHHcccCCCCcEEEEe
Q 022451 182 DLADPIE-GG--PCYKLY-----------TKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 182 D~~~~~~-~~--p~~~L~-----------t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+++-... .. ....-+ -.+|+.. +...|+|+|.+.+-
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~ 182 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFA 182 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEE
Confidence 9873221 00 000011 2467787 78999999966443
No 100
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=4.5e-09 Score=101.97 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=93.8
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh---ccCC
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---SRKE 174 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~---~~~~ 174 (297)
...++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+.. ...+
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhcccccccccc
Confidence 34567899999999999998888753 34699999999999999999886543 2469999999987642 1236
Q ss_pred CceEEEEcCCCCC----CCCCccC-c-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHH
Q 022451 175 SYDVIIGDLADPI----EGGPCYK-L-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (297)
Q Consensus 175 ~yD~Ii~D~~~~~----~~~p~~~-L-----------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l 238 (297)
+||.|++|++-.. ...|... . ...++++. +.+.|+|||.|+..+++ ....+....+...+
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvystcs---i~~~Ene~~v~~~l 400 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYATCT---LHPAENEAQIEQFL 400 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC---CChhhHHHHHHHHH
Confidence 7999999987211 1111100 0 02567888 78999999999877653 22333333344444
Q ss_pred HhhCCc
Q 022451 239 RQVFKY 244 (297)
Q Consensus 239 ~~~F~~ 244 (297)
+ .+|+
T Consensus 401 ~-~~~~ 405 (434)
T PRK14901 401 A-RHPD 405 (434)
T ss_pred H-hCCC
Confidence 4 4454
No 101
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.09 E-value=6.1e-10 Score=96.56 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=74.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++.....+ -++++...|...+ . ..++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~-~-~~~~fD~I~ 99 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAA-A-LNEDYDFIF 99 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhc-c-ccCCCCEEE
Confidence 35789999999999999999985 3689999999999999988765332 2367777776432 1 235799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+...-.. .+. -....+++. +++.|+|||.+++
T Consensus 100 ~~~~~~~--~~~--~~~~~~l~~-~~~~LkpgG~lli 131 (195)
T TIGR00477 100 STVVFMF--LQA--GRVPEIIAN-MQAHTRPGGYNLI 131 (195)
T ss_pred Eeccccc--CCH--HHHHHHHHH-HHHHhCCCcEEEE
Confidence 8654221 110 112478888 7999999998543
No 102
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=5.1e-09 Score=89.25 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=81.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++||++|||+|.++..+++. ..+|+++|+++.+++.+++++.... +.+.+++++.+|..+.+. .++||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR--GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc--ccCceEEE
Confidence 46678999999999999999986 4799999999999999999876542 122238899999866543 34799999
Q ss_pred EcCCCCCCCCCc----------------cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPC----------------YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~----------------~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++++-... .+. .......+++. +.+.|+|||.+++..
T Consensus 96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQ 148 (188)
T ss_pred ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEE
Confidence 98752110 000 00112457888 789999999888765
No 103
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.07 E-value=5.4e-10 Score=96.03 Aligned_cols=109 Identities=19% Similarity=0.299 Sum_probs=80.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
-.+.+||||.+|+|.++.+++.+ +..+|+.||.|+..++..++++...+ ...+++++..|+..++.. ...+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCce
Confidence 46889999999999999999986 57899999999999999999987442 124799999999988855 368999
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHc--ccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGvl~~~~~ 220 (297)
+|++|+|-.. .++-.+.++. +. ..|+++|++++...
T Consensus 117 iIflDPPY~~------~~~~~~~l~~-l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 117 IIFLDPPYAK------GLYYEELLEL-LAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEEE--STTS------CHHHHHHHHH-HHHTTSEEEEEEEEEEEE
T ss_pred EEEECCCccc------chHHHHHHHH-HHHCCCCCCCEEEEEEec
Confidence 9999986322 1112345555 33 89999999999863
No 104
>PTZ00146 fibrillarin; Provisional
Probab=99.07 E-value=4.5e-09 Score=96.02 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~y 176 (297)
..+..+||+||||+|.++..++... +..+|++||+++++.+...+... ..+++..+.+|++.- .....+.+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCC
Confidence 3566799999999999999999864 34689999999976533332211 125789999998642 12123579
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCC---chHHHHHHHHHHhh-CCceeEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH---TEVFSCIYNTLRQV-FKYVVPYSAHI 252 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~---~~~~~~i~~~l~~~-F~~v~~~~~~v 252 (297)
|+|++|...|+ . ...+... +++.|+|||.|++.+........ .+.++.-++.|++. |..+... .+
T Consensus 204 DvV~~Dva~pd--q------~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v--~L 272 (293)
T PTZ00146 204 DVIFADVAQPD--Q------ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL--TL 272 (293)
T ss_pred CEEEEeCCCcc--h------HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE--ec
Confidence 99999986433 1 1234445 68899999999885422211111 22233334778776 8765433 45
Q ss_pred CccCCceeEEEEecCC
Q 022451 253 PSFADTWGWIMVSIYN 268 (297)
Q Consensus 253 p~~~~~~~~~~as~~~ 268 (297)
+.|......+++..+.
T Consensus 273 ~Py~~~h~~v~~~~~~ 288 (293)
T PTZ00146 273 EPFERDHAVVIGVYRP 288 (293)
T ss_pred CCccCCcEEEEEEEcC
Confidence 5565445556655444
No 105
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.07 E-value=4.7e-10 Score=98.32 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=76.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+..+||+||+|+|..+..++.. .+..+|++||+++.+++.|++++...+ ..+++++.+|+..-+.. ..+||.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg~~g~~~-~apfD~ 144 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDGSEGWPE-EAPFDR 144 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-GGGTTGG-G-SEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcchhhcccc-CCCcCE
Confidence 467789999999999999888875 335689999999999999999987542 35899999999876644 468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++....+. .| .. +.+.|++||+|++-..
T Consensus 145 I~v~~a~~~--ip----------~~-l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 145 IIVTAAVPE--IP----------EA-LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEESSBBSS--------------HH-HHHTEEEEEEEEEEES
T ss_pred EEEeeccch--HH----------HH-HHHhcCCCcEEEEEEc
Confidence 999875432 22 12 3567999999998653
No 106
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.06 E-value=6.7e-09 Score=89.73 Aligned_cols=107 Identities=18% Similarity=0.097 Sum_probs=81.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---CCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---~~~yD~ 178 (297)
..++|||++||+|.++.+++.+. ..+|++||+|+.+++.+++++...+. ..+++++.+|+..++... ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~---~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKS---GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---cccEEEEehhHHHHHHHhhccCCCceE
Confidence 56899999999999999999874 56899999999999999999876531 247999999998887532 234899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHH-cccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGvl~~~~ 219 (297)
|+.|++-.. .+ ..+.++.+. ...|+++|++++..
T Consensus 125 v~~DPPy~~------~~-~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFN------GA-LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCC------Cc-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999987422 11 223444411 35799999999874
No 107
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=9e-10 Score=99.92 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=85.4
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||.|+++..+++.+ ..+|++|++|+...+.+++.+...+ + ..+++++..|-+++ .++||-
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l-~~~v~v~l~d~rd~----~e~fDr 140 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--L-EDNVEVRLQDYRDF----EEPFDR 140 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--C-CcccEEEecccccc----ccccce
Confidence 34788999999999999999999987 5799999999999999999876443 1 25899999997665 355999
Q ss_pred EEEc-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++- .+.+. ++ -.-..||+. +++.|+|||.+++++
T Consensus 141 IvSvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~ 176 (283)
T COG2230 141 IVSVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS 176 (283)
T ss_pred eeehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence 8874 33433 22 123589999 899999999999886
No 108
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.06 E-value=9.1e-10 Score=103.10 Aligned_cols=132 Identities=14% Similarity=0.035 Sum_probs=91.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||||||+|.++..+++..+..+++++|+++.+++.|++... .++++++.+|+.+. ....+.||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l-p~~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL-PFPTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC-CCCCCceeEEE
Confidence 34679999999999999888876556799999999999999998753 24688999998753 33356899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec-CCCCCcC---------CchHHHHHHHHHHhh-CCceeE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-GPAGIFS---------HTEVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~-~~p~~~~---------~~~~~~~i~~~l~~~-F~~v~~ 247 (297)
+...-.. .+ -....+++ +.+.|+|||.+++.. ..|..+. ......++.+.+++. |..+..
T Consensus 184 s~~~L~~--~~----d~~~~L~e-~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 184 SAGSIEY--WP----DPQRGIKE-AYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred EcChhhh--CC----CHHHHHHH-HHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 8654221 11 11357888 899999999987642 1121110 011235566677766 776553
No 109
>PHA03412 putative methyltransferase; Provisional
Probab=99.06 E-value=1.7e-09 Score=95.76 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCCeEEEEccchhHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+.+|||+|||+|.++..+++.. +..+|++||+|+.+++.|++++ ++++++.+|+..+. ...+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence 46799999999999999887642 3468999999999999999763 45889999987543 2468999
Q ss_pred EEEcCCCC-CCC----C-CccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 179 IIGDLADP-IEG----G-PCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 179 Ii~D~~~~-~~~----~-p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
||+++|-. ... . ....+....+++. +.+.+++|+ +++
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~Ll~~G~-~IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQIARQGT-FII 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHH-HHHHcCCCE-EEe
Confidence 99999832 110 0 0112445567777 566555555 443
No 110
>PRK08317 hypothetical protein; Provisional
Probab=99.05 E-value=1.7e-09 Score=95.17 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=81.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+||++|||+|.++..+++.. +..+++++|+++.+++.|++.... ..++++++.+|+...- ...++||+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~~D~ 90 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP-FPDGSFDA 90 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC-CCCCCceE
Confidence 3567899999999999999998865 567999999999999999987322 2367899999976532 23468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-..... ...+++. +.+.|+|||.+++..
T Consensus 91 v~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 91 VRSDRVLQHLED------PARALAE-IARVLRPGGRVVVLD 124 (241)
T ss_pred EEEechhhccCC------HHHHHHH-HHHHhcCCcEEEEEe
Confidence 998754222111 2468888 799999999988653
No 111
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.05 E-value=7.5e-09 Score=100.16 Aligned_cols=138 Identities=21% Similarity=0.177 Sum_probs=92.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD 177 (297)
...++.+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++...+ +. .++.+..+|+..... ...++||
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccC
Confidence 3456789999999999999999886556799999999999999999886543 11 234446677653221 1246799
Q ss_pred EEEEcCCCCCC----CCCccC-c-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 178 VIIGDLADPIE----GGPCYK-L-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 178 ~Ii~D~~~~~~----~~p~~~-L-----------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.|++|++-... ..|... . ...+++.. +.+.|+|||.|+..+++- ..+.-..+++.+-+.
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~----~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV----LPEENSEQIKAFLQE 386 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhCHHHHHHHHHh
Confidence 99999862111 112100 0 12468888 789999999999887642 223334445555455
Q ss_pred CCc
Q 022451 242 FKY 244 (297)
Q Consensus 242 F~~ 244 (297)
++.
T Consensus 387 ~~~ 389 (426)
T TIGR00563 387 HPD 389 (426)
T ss_pred CCC
Confidence 554
No 112
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.05 E-value=9.9e-10 Score=107.57 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=80.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|+++.... ..+++++.+|+.... -.+++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~~-~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTKKT-YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCcccCC-CCCCCEEEEE
Confidence 456799999999999999888765 568999999999999999875321 357999999976532 2346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.+... ...+++. +++.|+|||.+++..
T Consensus 338 s~~~l~h~~d------~~~~l~~-~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILHIQD------KPALFRS-FFKWLKPGGKVLISD 369 (475)
T ss_pred ECCcccccCC------HHHHHHH-HHHHcCCCeEEEEEE
Confidence 8644222111 2378888 899999999998764
No 113
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.04 E-value=1.6e-09 Score=95.71 Aligned_cols=107 Identities=19% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+||++|||+|..+..+++..+ ..+++++|+++.+++.+++++.... .+++++++.+|+.... ...+.||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP-FPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC-CCCCCccEE
Confidence 4568999999999999999988654 5899999999999999999875421 2367899999987643 234689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++...-... + . ...+++. +.+.|+|||.+++.
T Consensus 126 ~~~~~l~~~--~--~--~~~~l~~-~~~~L~~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNV--P--D--IDKALRE-MYRVLKPGGRLVIL 157 (239)
T ss_pred EEecccccC--C--C--HHHHHHH-HHHhccCCcEEEEE
Confidence 876442221 1 1 2477888 79999999988764
No 114
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.8e-09 Score=97.49 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=86.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|.++..+++. +..+|.++|+||..++.|+++...++.. +.++.-..+..... ..++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~---~~~~~~~~~~~~~~--~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVE---LLVQAKGFLLLEVP--ENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCc---hhhhcccccchhhc--ccCcccEEE
Confidence 58899999999999999999997 5789999999999999999998877421 12222222222222 236899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh-hCCce
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKYV 245 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~-~F~~v 245 (297)
.+.-. .| + ..+... ++++|+|||.+++..- -.+....+...+.+ -|.-+
T Consensus 235 ANILA----~v---l--~~La~~-~~~~lkpgg~lIlSGI------l~~q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 235 ANILA----EV---L--VELAPD-IKRLLKPGGRLILSGI------LEDQAESVAEAYEQAGFEVV 284 (300)
T ss_pred ehhhH----HH---H--HHHHHH-HHHHcCCCceEEEEee------hHhHHHHHHHHHHhCCCeEe
Confidence 99752 12 1 256677 7899999999998642 12335666677744 46544
No 115
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.04 E-value=1.4e-09 Score=101.80 Aligned_cols=112 Identities=21% Similarity=0.055 Sum_probs=83.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+|||+|||+|+++.++... ..+++++|+|+.+++.|++++...+ .++++++.+|+.+. ....+.||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l-~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKL-PLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcC-CcccCCCCEE
Confidence 355678999999999999887764 4789999999999999999886542 23488999998763 3335789999
Q ss_pred EEcCCCCCCCCCccC---cccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYK---LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~---L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++|+|-......... -...++++. +++.|+|||.+++..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence 999873221111111 113578888 799999999998775
No 116
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.04 E-value=1.8e-10 Score=102.35 Aligned_cols=102 Identities=19% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCC---CeEEEEcchHHHHhccCCCceEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP---RLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~---rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
+++|||+|||+|.++..|++.. ++|+++|+++++++.|+++.... -.++.+ |+++...|+.. ..++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~----~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG----LTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh----ccccccee
Confidence 3789999999999999999974 79999999999999999994322 111222 46666677543 34569999
Q ss_pred EEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.-. .+. ..| .+|.+. +.++|+|+|.+.+.+
T Consensus 163 vcsevleHV-~dp------~~~l~~-l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLEHV-KDP------QEFLNC-LSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHHHH-hCH------HHHHHH-HHHHhCCCCceEeee
Confidence 88643 222 123 378887 799999999998875
No 117
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.02 E-value=1.3e-09 Score=100.17 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|..+..+++. ..+|+++|+++.+++.+++.....+ -++++...|....- .+++||+|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~-----l~v~~~~~D~~~~~--~~~~fD~I~ 189 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKEN-----LNIRTGLYDINSAS--IQEEYDFIL 189 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEechhccc--ccCCccEEE
Confidence 45679999999999999999885 3689999999999999998865432 36888888875532 257899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+...-.. .+. . .-..+++. ++++|+|||++++
T Consensus 190 ~~~vl~~--l~~-~-~~~~~l~~-~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMF--LNR-E-RIPAIIKN-MQEHTNPGGYNLI 221 (287)
T ss_pred Ecchhhh--CCH-H-HHHHHHHH-HHHhcCCCcEEEE
Confidence 8754221 110 1 12368888 7999999998654
No 118
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.02 E-value=2e-09 Score=94.06 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=81.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+||++|||+|..+..+++..+. .+++++|+++.+++.+++++.. .++++++.+|+.+.. ...++||+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~-~~~~~~D~ 109 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL------PLNIEFIQADAEALP-FEDNSFDA 109 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc------CCCceEEecchhcCC-CCCCcEEE
Confidence 346789999999999999998886554 6899999999999999988651 367899999987643 23468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...... .+ . ...+++. +++.|+|||.+++..
T Consensus 110 i~~~~~~~~--~~--~--~~~~l~~-~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 110 VTIAFGLRN--VT--D--IQKALRE-MYRVLKPGGRLVILE 143 (223)
T ss_pred EEEeeeeCC--cc--c--HHHHHHH-HHHHcCCCcEEEEEE
Confidence 988654221 11 1 2468888 799999999998653
No 119
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.01 E-value=2.8e-09 Score=99.50 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=76.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++|||||||+|..+..+++.. ..+|+++|+++.++..++..-.... .+++++++.+|+.+. .. .++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEE
Confidence 457899999999999999998864 4579999999998865432211111 136899999997654 33 57899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-..-.....| ..+++. +++.|+|||.+++.+
T Consensus 195 s~~vl~H~~dp------~~~L~~-l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYHRRSP------LDHLKQ-LKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhccCCH------HHHHHH-HHHhcCCCcEEEEEE
Confidence 85432211122 368888 899999999998763
No 120
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.00 E-value=4.5e-09 Score=93.15 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=94.6
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceEEEE
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~Ii~ 181 (297)
.-+|+||||.|.....+++..|...+.+||+...++..|.+.....+ -+|++++..||.+.+... ++..|-|++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 57999999999999999988888999999999999999988766442 248999999999988763 348999999
Q ss_pred cCCCCCCCCCc--cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.-+|||.-... ..|...+|++. +.+.|+|||.|.+.+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT 164 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT 164 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence 99999943222 46899999999 899999999999886
No 121
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.00 E-value=3.4e-09 Score=79.46 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=78.7
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
+++++|||.|..+..+++ .+..+++++|+++..++.+++..... ...+++++.+|..++......+||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999988 45789999999999999998532221 2367899999998876434568999999876
Q ss_pred CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.... .-....+++. +.+.|+|+|.+++.
T Consensus 76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence 3220 1123467787 78999999999764
No 122
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.00 E-value=3e-09 Score=93.20 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=77.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+..+||++|||+|..+..+.+.. .+++++|+++.+++.|++++...+ -.+++++.+|+.+.+. ..++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWP-AYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCC-cCCCcCEE
Confidence 3567899999999999998777653 489999999999999999887442 2459999999865433 23689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+++...+ . +.+. +.+.|+|||.+++...
T Consensus 149 ~~~~~~~-------~-----~~~~-l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAP-------E-----IPRA-LLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCch-------h-----hhHH-HHHhcCCCcEEEEEEc
Confidence 9986421 1 1234 5689999999988753
No 123
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.99 E-value=2.9e-09 Score=93.10 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+||++|||+|..+..+.+..+..++++||+++.+++.|++++ ++++++.+|+.+. ..+++||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEE
Confidence 35678999999999999999988656689999999999999999853 4577888997762 245789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L 209 (297)
++...-... .| .. -.++++. +.+.+
T Consensus 110 ~~~~vL~hl-~p-~~--~~~~l~e-l~r~~ 134 (204)
T TIGR03587 110 LTKGVLIHI-NP-DN--LPTAYRE-LYRCS 134 (204)
T ss_pred EECChhhhC-CH-HH--HHHHHHH-HHhhc
Confidence 987652210 12 11 2367777 67776
No 124
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.98 E-value=5.2e-09 Score=88.56 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=76.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+||+||||+|.++.++++. ..++++||+|+.+++.+++++.. .++++++.+|+.++.. .+.+||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEE
Confidence 45678999999999999999986 47899999999999999988742 3689999999987642 234699999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcc-cCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGvl~~~~ 219 (297)
++++-.. +.+.+..++.. .+.++|+++++.
T Consensus 83 ~n~Py~~---------~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 83 GNLPYNI---------STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ECCCccc---------HHHHHHHHHhcCCCcceEEEEEEH
Confidence 9975321 12333332332 355899999885
No 125
>PRK06922 hypothetical protein; Provisional
Probab=98.97 E-value=3e-09 Score=106.09 Aligned_cols=112 Identities=20% Similarity=0.106 Sum_probs=82.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~Ii 180 (297)
.+.+|||||||+|..+..+++..+..+++++|+++.|++.|++..... ..+++++.+|+.+.-. -.+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 578999999999999988887667889999999999999999875432 2568899999876321 2356899999
Q ss_pred EcCCCCCC--CCCc-----cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIE--GGPC-----YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~--~~p~-----~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-++- ..|. ..-.-..+++. +.++|+|||.+++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence 87542210 0000 00122478888 799999999999875
No 126
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.97 E-value=7.6e-09 Score=96.28 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=80.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+.+|||+|||+|.++..+++. ..+|++||+++.+++.|+++...++ -++++++.+|+.+++....++||+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 4689999999999999999984 4799999999999999999886553 257999999999887544457999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|++.. + ...+..+. + ..++|++++.+.+++
T Consensus 247 dPPr~---G-----~~~~~~~~-l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 247 NPPRR---G-----IGKELCDY-L-SQMAPRFILYSSCNA 276 (315)
T ss_pred CCCCC---C-----ccHHHHHH-H-HHcCCCeEEEEECCc
Confidence 97621 1 12344444 3 447888888877654
No 127
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.96 E-value=3.8e-09 Score=100.79 Aligned_cols=101 Identities=23% Similarity=0.366 Sum_probs=77.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++... ...+++...|.+.. .++||+|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence 567899999999999999998865 4689999999999999998753 12488888997653 46899998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+... .+. +. -.-..+++. +.+.|+|||.+++..
T Consensus 234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 7543 211 11 112478898 899999999998874
No 128
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.96 E-value=2.7e-09 Score=97.15 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=72.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCC---cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTV---EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~---~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
....+|||+|||+|.++..+.+..+. .+++++|+++.+++.|++.. +++++..+|+.+. .-.++.||
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l-p~~~~sfD 153 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-PFADQSLD 153 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC-CCcCCcee
Confidence 34578999999999999988865332 37999999999999998752 5688999997653 33457899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++... | .++++ +++.|+|||.+++..
T Consensus 154 ~I~~~~~------~-------~~~~e-~~rvLkpgG~li~~~ 181 (272)
T PRK11088 154 AIIRIYA------P-------CKAEE-LARVVKPGGIVITVT 181 (272)
T ss_pred EEEEecC------C-------CCHHH-HHhhccCCCEEEEEe
Confidence 9997431 2 22456 689999999998764
No 129
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.96 E-value=4.7e-09 Score=92.92 Aligned_cols=108 Identities=23% Similarity=0.244 Sum_probs=81.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCC------cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~ 174 (297)
...-++||++||+|-++-.++++.+. .+|+++||||.|+..+++.-.. .....++++.++.+||.+ |.-.+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~-LpFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAED-LPFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCccc-CCCCCC
Confidence 45689999999999999999987655 7999999999999999987522 112245789999999876 445678
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
.||...+.----.-..+ ...+++ +.|+|||||++..
T Consensus 177 s~D~yTiafGIRN~th~------~k~l~E-AYRVLKpGGrf~c 212 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHI------QKALRE-AYRVLKPGGRFSC 212 (296)
T ss_pred cceeEEEecceecCCCH------HHHHHH-HHHhcCCCcEEEE
Confidence 89988775431110111 256777 7999999998864
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.95 E-value=5.9e-09 Score=97.08 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=77.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+..+||+||||+|.++..+++..+ ..+|++||+++.+++.|++.+...+ .++++++.+|+.+.+.. ...||+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~-~~~fD~I 153 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPE-FAPYDVI 153 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhcccc-cCCccEE
Confidence 4568999999999999999888653 2479999999999999999876442 25799999998776543 3579999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++...+ +.... +.+.|+|||.+++..
T Consensus 154 i~~~g~~------------~ip~~-~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGVD------------EVPET-WFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCchH------------HhHHH-HHHhcCCCCEEEEEe
Confidence 9985321 11223 467899999988764
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.94 E-value=5.8e-09 Score=92.48 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=81.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+||+||||+|.++..+.+. ..+++++|+++.+++.|++++.... .+++++..|...+.....++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESG-----LKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcC-----CceEEEecCHHHhhhhcCCCccEEE
Confidence 35789999999999999988875 3689999999999999998876432 3578888998877644557899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-..... ..++++. +.+.|+|||.+++..
T Consensus 120 ~~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLEHVPD------PASFVRA-CAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhhccCC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 8643221111 2367888 799999999998764
No 132
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.94 E-value=1e-08 Score=97.57 Aligned_cols=103 Identities=10% Similarity=0.142 Sum_probs=81.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+++|||+|||+|.++..++.. ..+|++||+|+.+++.|+++...++ -++++++.+|+.+++....++||+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 4579999999999999999864 4789999999999999999987653 247999999999887543356999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+|-. + ...++.+. +. .++|++++.+.+.
T Consensus 307 DPPr~---G-----~~~~~l~~-l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 307 NPPRR---G-----IGKELCDY-LS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCCC---C-----CcHHHHHH-HH-hcCCCeEEEEEeC
Confidence 98731 1 23466676 43 5899999888753
No 133
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.94 E-value=7.8e-09 Score=95.98 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..++... ..+|++||+++.++..++..-.... .++++.+...|..+. .. ...||+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~l-p~-~~~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQL-HE-LYAFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHC-CC-CCCcCEEE
Confidence 457899999999999998888764 4589999999999865432111111 236788888886553 22 35799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.+...| .++++. +++.|+|||.|++.+
T Consensus 194 s~gvL~H~~dp------~~~L~e-l~r~LkpGG~Lvlet 225 (314)
T TIGR00452 194 SMGVLYHRKSP------LEHLKQ-LKHQLVIKGELVLET 225 (314)
T ss_pred EcchhhccCCH------HHHHHH-HHHhcCCCCEEEEEE
Confidence 87542221122 368888 899999999998764
No 134
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=5.1e-09 Score=92.02 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=79.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-----------------------------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA----------------------------- 152 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~----------------------------- 152 (297)
.++.+|||||-.|.++..++++++...|.+||||+..+..|++++......
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 578999999999999999999988899999999999999999987543110
Q ss_pred ---------CCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 153 ---------FSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 153 ---------~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...|..+-.. +||.....+||+|++-.-.-|.+-. ...| ..||+. +.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~---dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~k-is~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESD---DFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRK-ISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecc---hhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHH-HHHhhCcCcEEEEc
Confidence 00011111112 3454456789999886654332110 0123 479999 89999999999997
No 135
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.93 E-value=6.2e-09 Score=96.33 Aligned_cols=107 Identities=11% Similarity=0.113 Sum_probs=79.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|||||||+|.++..+++..|..+++++|+ |.+++.++++....+ -.+|++++.+|+.+. .-..+|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~---~~~~~D~v~ 220 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPEADAVL 220 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC---CCCCCCEEE
Confidence 4568999999999999999999878889999998 899999998876432 246899999997642 123479987
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.-.-+.. .+ -....+++. +.+.|+|||.+++..
T Consensus 221 ~~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 221 FCRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLILD 254 (306)
T ss_pred eEhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 65432110 11 112357888 799999999998774
No 136
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.92 E-value=8.7e-09 Score=90.60 Aligned_cols=106 Identities=19% Similarity=0.164 Sum_probs=81.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+||++|||+|.++..+++.. .+++++|+++.+++.+++++.... ..++++..+|+.++.....++||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEE
Confidence 347899999999999999888753 469999999999999998876432 12688999998887654457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-..... ...+++. +.+.|+|||.+++..
T Consensus 118 ~~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence 8643221111 2367888 799999999988764
No 137
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.91 E-value=8.6e-09 Score=98.24 Aligned_cols=101 Identities=23% Similarity=0.278 Sum_probs=82.4
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
..+|||++||+|..+..++...+..+|+++|+|+..++.+++++..++ -.+++++.+|+..++.. .++||+|++|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~-~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE-ERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh-cCCCCEEEEC
Confidence 358999999999999998775556799999999999999999987764 24578999999998864 4679999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++. .+ .+|+.. +.+.++++|++.+..
T Consensus 133 P~G----s~------~~~l~~-al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PFG----SP------APFLDS-AIRSVKRGGLLCVTA 158 (382)
T ss_pred CCC----Cc------HHHHHH-HHHHhcCCCEEEEEe
Confidence 862 22 267776 567899999998774
No 138
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=5.1e-09 Score=90.04 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=80.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE-EEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~-~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....||++|||+|..-...-- .|..+||++|.+|.|.+.|.+.+... ..+++. ++++|+++..+-.+.+||.|+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEE
Confidence 345789999999998776332 37889999999999999999887644 246776 999999887655678999998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.-.---....| .+.+++ +++.|+|||++++..
T Consensus 151 ~TlvLCSve~~------~k~L~e-~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 151 CTLVLCSVEDP------VKQLNE-VRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEEeccCCH------HHHHHH-HHHhcCCCcEEEEEe
Confidence 87542111122 367788 799999999998764
No 139
>PRK05785 hypothetical protein; Provisional
Probab=98.90 E-value=1.6e-08 Score=89.76 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.+.+|||||||+|.++..+.+.. ..+|+++|++++|++.|++. ...+++|+.. +.-.+++||+|+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~------------~~~~~~d~~~-lp~~d~sfD~v~ 115 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA------------DDKVVGSFEA-LPFRDKSFDVVM 115 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc------------cceEEechhh-CCCCCCCEEEEE
Confidence 347899999999999999998864 46899999999999999863 1246788765 344568899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCc
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG 213 (297)
+...-.+... -...+++ ++++|+|.+
T Consensus 116 ~~~~l~~~~d------~~~~l~e-~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASDN------IEKVIAE-FTRVSRKQV 141 (226)
T ss_pred ecChhhccCC------HHHHHHH-HHHHhcCce
Confidence 9764322111 2368888 799999953
No 140
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.90 E-value=5.4e-08 Score=94.70 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=80.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
.+..+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++..++ -.+++++.+|+.+++.. .+.+||
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCC
Confidence 456799999999999999998863 689999999999999999886553 24699999999887642 235799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++|++-. + + .+.++. +. .++|++++.+.+++
T Consensus 370 ~Vi~dPPr~---g----~--~~~~~~-l~-~~~~~~ivyvSCnp 402 (443)
T PRK13168 370 KVLLDPPRA---G----A--AEVMQA-LA-KLGPKRIVYVSCNP 402 (443)
T ss_pred EEEECcCCc---C----h--HHHHHH-HH-hcCCCeEEEEEeCh
Confidence 999998632 1 1 144555 44 47999998887643
No 141
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.87 E-value=9.9e-09 Score=90.31 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=75.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--------CCCCCCCeEEEEcchHHHHhcc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~--------~~~~~~rv~~~~~Da~~~l~~~ 172 (297)
+++.+||++|||.|..+..++++ ..+|++||+++.+++.+.+...... ......+++++++|..++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 46679999999999999999986 4689999999999998644221110 0012357999999987653222
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.++||.|+-...-.. -| .. ....+++. +.+.|+|||.+++.
T Consensus 111 ~~~fD~i~D~~~~~~--l~-~~-~R~~~~~~-l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 LGPVDAVYDRAALIA--LP-EE-MRQRYAAH-LLALLPPGARQLLI 151 (213)
T ss_pred CCCcCEEEechhhcc--CC-HH-HHHHHHHH-HHHHcCCCCeEEEE
Confidence 357998875433111 11 11 23458888 89999999965444
No 142
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.87 E-value=2.8e-08 Score=91.95 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=76.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC----C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE----S 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~----~ 175 (297)
+++.+||++|||+|..+..+++..+ ..++++||++++|++.|++.+.... ..-+++.+++|..+.+..... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhhcccccCC
Confidence 4568899999999999999998643 4789999999999999998765321 123466789998765432211 2
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+++++..-.. -+ .--...+++. ++++|+|||.+++-..
T Consensus 139 ~~~~~~gs~~~~--~~--~~e~~~~L~~-i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 139 RLGFFPGSTIGN--FT--PEEAVAFLRR-IRQLLGPGGGLLIGVD 178 (301)
T ss_pred eEEEEecccccC--CC--HHHHHHHHHH-HHHhcCCCCEEEEecc
Confidence 334444443221 11 1112468999 8999999999987653
No 143
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.87 E-value=4.3e-08 Score=95.04 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=80.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
....+|||+|||+|.++..+++. ..+|++||+++.+++.|++++..++ -.+++++.+|+.+++.. ....||
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 45579999999999999999875 4689999999999999999987553 25899999999887653 235799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++|++.. + ...++++. +. .|+|++++.+.+
T Consensus 365 ~vi~dPPr~---G-----~~~~~l~~-l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 365 VLLLDPPRK---G-----CAAEVLRT-II-ELKPERIVYVSC 396 (431)
T ss_pred EEEECcCCC---C-----CCHHHHHH-HH-hcCCCEEEEEcC
Confidence 999998631 1 13467776 44 589999877654
No 144
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=1.5e-07 Score=84.21 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=83.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE----EcchHHHHhccCCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV----INDARAELESRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~----~~Da~~~l~~~~~~ 175 (297)
+..+..+|++|||+|+++..++...+..+|++||.++.++.+|.++..... -..++.++ .+|+..-.....++
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccccccCc
Confidence 445668999999999999999987778999999999999999999875332 13577777 45544433334588
Q ss_pred ceEEEEcCCC-CCCC-----------CCccCc--------ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 176 YDVIIGDLAD-PIEG-----------GPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 176 yD~Ii~D~~~-~~~~-----------~p~~~L--------~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+|+|+++++- +..+ .|...| .-.-++.. +.++|+|||.+.++..
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEec
Confidence 9999999871 1110 111111 11235565 6799999999999875
No 145
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.85 E-value=1.4e-08 Score=99.55 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=78.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~~~yD~I 179 (297)
.+.++|||||||+|.++..+++. ..+|++||+++.+++.+++.... .++++++.+|+... +...+++||+|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~------~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGH------YKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhcc------CCceEEEEecccccccCCCCCCEEEE
Confidence 34679999999999999999986 36899999999999988763221 36799999998642 22345789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.. .+. . .-.++++. +++.|+|||++++..
T Consensus 108 ~~~~~l~~--l~~-~-~~~~~l~~-~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMY--LSD-K-EVENLAER-MVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHh--CCH-H-HHHHHHHH-HHHhcCCCeEEEEEe
Confidence 99865322 110 0 02478888 799999999998753
No 146
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=3.8e-08 Score=83.80 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=76.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-..+.|+|+|||+|.++..++.. +..+|++||+||+.+++++++.... ..+++++++|+..+ ..++|.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceEE
Confidence 46788999999999999888875 5689999999999999999987642 36899999997665 57899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+|-... ..+ .+++|+.. +.+.- +.+..+.
T Consensus 114 mNPPFG~~---~rh-aDr~Fl~~-Ale~s--~vVYsiH 144 (198)
T COG2263 114 MNPPFGSQ---RRH-ADRPFLLK-ALEIS--DVVYSIH 144 (198)
T ss_pred ECCCCccc---ccc-CCHHHHHH-HHHhh--heEEEee
Confidence 99874321 112 56788776 44433 4555554
No 147
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.84 E-value=2.6e-08 Score=94.61 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=85.3
Q ss_pred CeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 104 KTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
.+|||+.+|+|..+.+++... +..+|+++|+||..++.++++...++ -.+++++.+|+..++....++||+|++|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 589999999999999998863 56899999999999999999988763 2468999999999997766789999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++. .|. +|++. +.+.++++|+|.+..
T Consensus 122 PfG----s~~------~fld~-al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PFG----TPA------PFVDS-AIQASAERGLLLVTA 147 (374)
T ss_pred CCC----CcH------HHHHH-HHHhcccCCEEEEEe
Confidence 862 232 68888 788999999998873
No 148
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.83 E-value=2.8e-08 Score=87.42 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++|||||||+|.++..+++. ..+|+++|+|+.+++.|++.+.... ...++++..+|+.+. .++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~----~~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL----CGEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC----CCCcCEEE
Confidence 45789999999999999999875 4589999999999999999876432 124799999997653 26899998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+-.. ... +... -...++. +.+.+++++++..
T Consensus 125 ~~~~l~~~---~~~~--~~~~l~~-i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHY---PASD--MAKALGH-LASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhC---CHHH--HHHHHHH-HHHHhCCCEEEEE
Confidence 7432 221 1111 1356777 6777887766654
No 149
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.83 E-value=1.4e-08 Score=87.60 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.++||||||.|..+.++++. .-.|+++|+++..++.+++..... +-.++....|..++- .+++||+|
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~~~~yD~I 98 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--FPEEYDFI 98 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---TTTEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--ccCCcCEE
Confidence 346899999999999999999986 468999999999999887754432 134888999965542 24689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...... -+ ..+ -...++. +++.++|||++++.+
T Consensus 99 ~st~v~~f--L~-~~~-~~~i~~~-m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 99 VSTVVFMF--LQ-REL-RPQIIEN-MKAATKPGGYNLIVT 133 (192)
T ss_dssp EEESSGGG--S--GGG-HHHHHHH-HHHTEEEEEEEEEEE
T ss_pred EEEEEecc--CC-HHH-HHHHHHH-HHhhcCCcEEEEEEE
Confidence 97643211 11 122 2467888 899999999988753
No 150
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.83 E-value=1e-08 Score=84.73 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=69.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++++||+||||.|.++..+.+.. .+++++|+++.+++. .+ +.....+... ....+++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhH
Confidence 4678999999999999999997753 499999999999988 11 1111111111 22346789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.+ .+ .-..+++. +.++|+|||++++..
T Consensus 83 ~~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 83 ICNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD 115 (161)
T ss_dssp EEESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred hhHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence 99854322 11 13478888 899999999999876
No 151
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.83 E-value=3e-07 Score=87.19 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=76.9
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc----------
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------- 172 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---------- 172 (297)
+.+|||++||+|.++..+++. ..+|++||+++.+++.|+++...++ -.+++++.+|+.++++..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 357999999999999988875 4689999999999999999987653 248999999999987531
Q ss_pred -----CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 173 -----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 173 -----~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+||+|++|+|-. + ...+.++. +.+ +++++.+.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR~---G-----~~~~~l~~-l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRA---G-----LDDETLKL-VQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCC---C-----CcHHHHHH-HHc---cCCEEEEEeC
Confidence 12599999998731 2 23456565 443 7888887753
No 152
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.80 E-value=4.2e-07 Score=85.96 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---------C
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------K 173 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---------~ 173 (297)
+.+|||+|||+|.++..+.+.. .+|++||+++.+++.|++++..++ -.+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 4579999999999999888753 589999999999999999987653 247999999999988631 1
Q ss_pred ------CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 174 ------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 174 ------~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+||+|++|+|.. +. ..+.++. +. +|++++.+.+.
T Consensus 272 ~~~~~~~~~d~v~lDPPR~---G~-----~~~~l~~-l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRA---GL-----DPDTCKL-VQ---AYERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCCC---CC-----cHHHHHH-HH---cCCcEEEEEcC
Confidence 2489999998731 21 3355565 43 37888888754
No 153
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.80 E-value=3.1e-07 Score=80.45 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=102.2
Q ss_pred CCCCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----cCC
Q 022451 101 PNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-----~~~ 174 (297)
-.++++|+||.=+|..+...+ ..++..+|+++|+|+...+.+.+.....+ -+..++++++++.+-|.+ ..+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG---VDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc---ccceeeeeecchhhhHHHHHhcCCCC
Confidence 478999999999998875555 45778899999999999999987765443 357899999999887754 257
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec----C---CCCCcCCchHHHHHH---HHHHhhCCc
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA----G---PAGIFSHTEVFSCIY---NTLRQVFKY 244 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~----~---~p~~~~~~~~~~~i~---~~l~~~F~~ 244 (297)
.||++|+|+.- ..|. .+|.. +-+.|++||+|++.- + .|.. .....-..+. +.-.+....
T Consensus 149 tfDfaFvDadK--------~nY~-~y~e~-~l~Llr~GGvi~~DNvl~~G~v~~p~~-~~~~~~~~~r~~~~~n~~l~~D 217 (237)
T KOG1663|consen 149 TFDFAFVDADK--------DNYS-NYYER-LLRLLRVGGVIVVDNVLWPGVVADPDV-NTPVRGRSIREALNLNKKLARD 217 (237)
T ss_pred ceeEEEEccch--------HHHH-HHHHH-HHhhcccccEEEEeccccCCcccCccc-CCCcchhhhhhhhhhhhHhccC
Confidence 89999999641 2333 78888 679999999998762 2 2211 1111222222 444445555
Q ss_pred eeEEEEecCccCCceeEEEEec
Q 022451 245 VVPYSAHIPSFADTWGWIMVSI 266 (297)
Q Consensus 245 v~~~~~~vp~~~~~~~~~~as~ 266 (297)
.+.+...+|...+ ..+|.+
T Consensus 218 ~rV~~s~~~igdG---~~i~~k 236 (237)
T KOG1663|consen 218 PRVYISLLPIGDG---ITICRK 236 (237)
T ss_pred cceeeEeeeccCc---eeeecc
Confidence 6666666665433 455543
No 154
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.79 E-value=7e-08 Score=81.59 Aligned_cols=114 Identities=19% Similarity=0.321 Sum_probs=74.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+||+||||.|.++..|++..=...+++||.++..+++|+.-....+ .++.+++.+.|..+- ....++||+|+
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~---~~n~I~f~q~DI~~~-~~~~~qfdlvl 141 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG---FSNEIRFQQLDITDP-DFLSGQFDLVL 141 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC---CCcceeEEEeeccCC-cccccceeEEe
Confidence 34459999999999999999985323459999999999999876544332 123489999997542 22345677764
Q ss_pred EcCC-CCCC---CCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 181 GDLA-DPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 181 ~D~~-~~~~---~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
---+ +... ..+...+ .-++.. +.+.|+|||++++..+.
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEecC
Confidence 3211 1110 0221222 134455 78999999999998653
No 155
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.77 E-value=2.8e-08 Score=87.76 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=75.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--------CCCCCCCeEEEEcchHHHHhcc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~--------~~~~~~rv~~~~~Da~~~l~~~ 172 (297)
++..+||++|||.|..+..++++ ..+|++||+++..++.+.+.-.... ......+++++++|..++-...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999985 4689999999999997643211110 0123468999999988764332
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
...||+|+--..-.. -| .. ....+++. +.+.|+|||++.
T Consensus 114 ~~~fd~v~D~~~~~~--l~-~~-~R~~~~~~-l~~lL~pgG~~~ 152 (218)
T PRK13255 114 LADVDAVYDRAALIA--LP-EE-MRERYVQQ-LAALLPAGCRGL 152 (218)
T ss_pred CCCeeEEEehHhHhh--CC-HH-HHHHHHHH-HHHHcCCCCeEE
Confidence 357899885432111 11 11 23478888 899999998533
No 156
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.76 E-value=1.8e-08 Score=91.47 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=73.5
Q ss_pred CCCeEEEEccchhH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhhh-hc--cCC-----------C-----
Q 022451 102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLV-VN--KEA-----------F----- 153 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~f~-~~--~~~-----------~----- 153 (297)
.+.+|+++|||+|. ++..+++..+ ..+|+++|+|+.+++.|++..- .. ... .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4555554322 4689999999999999998431 00 000 0
Q ss_pred ----CCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 154 ----SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 154 ----~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-..+|++...|..+.- ...++||+|++.-.-.. -+ .-.....++. +.++|+|||+|++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~y--f~--~~~~~~~l~~-l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIY--FD--EPTQRKLLNR-FAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHh--CC--HHHHHHHHHH-HHHHhCCCeEEEEEC
Confidence 0136888888876532 13568999998532111 00 0012368888 899999999999863
No 157
>PRK06202 hypothetical protein; Provisional
Probab=98.75 E-value=4.3e-08 Score=87.02 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.++.+|||||||+|.++..+++. .+..+|+++|+++.+++.|++.... +++++...|+... ...+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l-~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDEL-VAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEecccc-cccCCCc
Confidence 46789999999999998887753 2345899999999999999986432 3466666655332 2245789
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|++...-+. .+... ..++++. +.+.++ |.++++.
T Consensus 131 D~V~~~~~lhh--~~d~~--~~~~l~~-~~r~~~--~~~~i~d 166 (232)
T PRK06202 131 DVVTSNHFLHH--LDDAE--VVRLLAD-SAALAR--RLVLHND 166 (232)
T ss_pred cEEEECCeeec--CChHH--HHHHHHH-HHHhcC--eeEEEec
Confidence 99999865322 11111 2368888 788887 4555553
No 158
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.71 E-value=1.8e-07 Score=82.41 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=69.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. .+++++|+++.+++.|++++.... ...+++++.+|. . ...+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~-~---~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDL-E---SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCc-h---hccCCcCEEE
Confidence 456899999999999999998763 469999999999999999876432 125789999993 2 2346799998
Q ss_pred EcCCC-CCCCCCccCcccHHHHHHHHcccCCCCcEE
Q 022451 181 GDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (297)
Q Consensus 181 ~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl 215 (297)
+...- +. +... ....++. +.+.+++++++
T Consensus 133 ~~~~l~~~---~~~~--~~~~l~~-l~~~~~~~~~i 162 (230)
T PRK07580 133 CLDVLIHY---PQED--AARMLAH-LASLTRGSLIF 162 (230)
T ss_pred EcchhhcC---CHHH--HHHHHHH-HHhhcCCeEEE
Confidence 75432 21 1111 1345566 55655544443
No 159
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.70 E-value=2.7e-08 Score=86.56 Aligned_cols=100 Identities=25% Similarity=0.398 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+...|+|+.||-|.++..++++.+...|.++|+||..++..+++...++. ..++.++.+|+++++. ...+|.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv---~~~i~~~~~D~~~~~~--~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV---ENRIEVINGDAREFLP--EGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC---CCeEEEEcCCHHHhcC--ccccCEEE
Confidence 568899999999999999999876778999999999999999999988752 3689999999999987 67899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
++++.. +.+|+.. +.+++++||++.
T Consensus 175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES----------SLEFLDA-ALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence 998631 2267777 788999999874
No 160
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.68 E-value=4.4e-08 Score=86.21 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=78.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
++.-+.++|+|||+|..++-++.++ ++|+++|+++.|+++|+++++..- .+-..++...|...++. .+++.|+|
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g-~e~SVDlI 104 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLG-GEESVDLI 104 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccC-CCcceeee
Confidence 3444589999999998888888885 689999999999999999875321 12233445555555543 36789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCc-EEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG-vl~~~~~ 220 (297)
++.-.-+|.. -.+||+. +++.|+++| +++++..
T Consensus 105 ~~Aqa~HWFd-------le~fy~~-~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 105 TAAQAVHWFD-------LERFYKE-AYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhhhhHHhhc-------hHHHHHH-HHHHcCCCCCEEEEEEc
Confidence 9876555522 2479999 899999977 8887753
No 161
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.67 E-value=7.6e-07 Score=86.96 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=95.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||+|+|.|+=+.+++... +...|+++|+++.-++..++++...+ -.++.+...|++.+.......||.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeE
Confidence 567899999999999888888753 34689999999999999999886542 3568999999987654445679999
Q ss_pred EEcCCCCCC----CCCcc-Cc-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 180 IGDLADPIE----GGPCY-KL-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 180 i~D~~~~~~----~~p~~-~L-----------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
++|++-... ..|.. .- ..++++.. +.+.|+|||+|+-.+++ ...+.-+.++..+-+.++
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT----~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCT----LNREENQAVCLWLKETYP 262 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCC----CCHHHHHHHHHHHHHHCC
Confidence 999983211 11100 01 12567777 68999999999777654 244455555655555555
Q ss_pred c
Q 022451 244 Y 244 (297)
Q Consensus 244 ~ 244 (297)
.
T Consensus 263 ~ 263 (470)
T PRK11933 263 D 263 (470)
T ss_pred C
Confidence 4
No 162
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.64 E-value=6e-07 Score=88.76 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=98.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
....-+|+||||.|..+.++++..|...+.+||+....+..|.+..... +-.|+.++.+|+..+... .+.+.|.|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 3466799999999999998888778899999999999887776654322 236788999997654433 34679999
Q ss_pred EEcCCCCCCCC--CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 180 IGDLADPIEGG--PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 180 i~D~~~~~~~~--p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
++.-+|||-.. ....+.+.+|++. +.+.|+|||.+-+.+. ..+.+..++..+.+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~TD------~~~y~~~~~~~~~~ 477 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFASD------IENYFYEAIELIQQ 477 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEcC------CHHHHHHHHHHHHh
Confidence 99999998321 1347899999999 8999999999988753 34455555555543
No 163
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.64 E-value=1.1e-07 Score=81.51 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
.++..+|||||||+|.+...+.+.. ..+..+||+|++-+..|.+. .+.++++|+-+.|.. .++.||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccE
Confidence 3678999999999999999988864 67899999999998888763 478999999888865 5789999
Q ss_pred EEEcCC
Q 022451 179 IIGDLA 184 (297)
Q Consensus 179 Ii~D~~ 184 (297)
||+.-+
T Consensus 79 VIlsqt 84 (193)
T PF07021_consen 79 VILSQT 84 (193)
T ss_pred EehHhH
Confidence 998755
No 164
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.63 E-value=1.2e-07 Score=82.72 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC-eEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r-v~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
...++||+|+|-|.++..++... ..+|+.||..+..++.|+++++.. .++ .+++..-..+|... ..+||+|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~-----~~~v~~~~~~gLQ~f~P~-~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD-----NPRVGEFYCVGLQDFTPE-EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-----GCCEEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc-----CCCcceEEecCHhhccCC-CCcEeEEE
Confidence 46799999999999999887643 689999999999999999987642 234 46666666666543 46899999
Q ss_pred EcCCCCCCCCCccCccc---HHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-..- .+|-+ .+|++. |++.|+|+|++++..
T Consensus 128 ~QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvKE 161 (218)
T PF05891_consen 128 IQWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVKE 161 (218)
T ss_dssp EES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ehHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEEe
Confidence 97542 23333 358999 699999999999874
No 165
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.63 E-value=4.9e-07 Score=84.07 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=70.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
++.+|||||||+|.++..+++. ..+|+++|+++.+++.|+++...... .....++++...|.... +++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence 4679999999999999999985 46899999999999999998653210 01134678899996542 46899998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+-.. .+. |... -.++++. +. .+.++|+++.
T Consensus 218 ~~~vL~H~---p~~~--~~~ll~~-l~-~l~~g~liIs 248 (315)
T PLN02585 218 CLDVLIHY---PQDK--ADGMIAH-LA-SLAEKRLIIS 248 (315)
T ss_pred EcCEEEec---CHHH--HHHHHHH-HH-hhcCCEEEEE
Confidence 6532 111 1111 1245665 44 4667777653
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.63 E-value=3.2e-07 Score=85.34 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=61.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEE-cchHHHHh---ccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELE---SRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~~~rv~~~~-~Da~~~l~---~~~~~y 176 (297)
...++||||||+|++...++...+..+++++|||+.+++.|++++..+ . + ..+++++. .|....+. ...++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l-~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--L-NGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--C-cCcEEEEEccchhhhhhcccccCCce
Confidence 468999999999988777665445679999999999999999998765 2 1 35788864 44433332 235689
Q ss_pred eEEEEcCCC
Q 022451 177 DVIIGDLAD 185 (297)
Q Consensus 177 D~Ii~D~~~ 185 (297)
|+|++++|-
T Consensus 191 DlivcNPPf 199 (321)
T PRK11727 191 DATLCNPPF 199 (321)
T ss_pred EEEEeCCCC
Confidence 999999973
No 167
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.60 E-value=5.6e-07 Score=75.17 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=83.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc-cCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-RKE 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~-~~~ 174 (297)
...+..||++|.|+|.+++.++++ .+...++++|.|++.+....+.+ |.++++.+|+... +.. ..+
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhcCCC
Confidence 355779999999999999999986 35678999999999999888765 4567999998653 333 457
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
.||.||+.++--. -| .-.+.+.++. +..+|.+||.++.-...|
T Consensus 117 ~~D~viS~lPll~--~P--~~~~iaile~-~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 117 FFDSVISGLPLLN--FP--MHRRIAILES-LLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred eeeeEEecccccc--Cc--HHHHHHHHHH-HHHhcCCCCeEEEEEecC
Confidence 8999999987322 22 1235578888 789999999998776443
No 168
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.59 E-value=6e-07 Score=82.02 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=81.4
Q ss_pred EEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHH---HHhhhhhc
Q 022451 73 VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF---CKSYLVVN 149 (297)
Q Consensus 73 ~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~---a~~~f~~~ 149 (297)
.+|-.+++. .-+.+..-|++ .-.+++|||||||.|..+-.+++. +...|+++|.++..... ++++++.
T Consensus 93 ~IDtEWrSd----~KW~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~- 163 (315)
T PF08003_consen 93 HIDTEWRSD----WKWDRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ- 163 (315)
T ss_pred eeccccccc----chHHHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC-
Confidence 455545433 34555444432 347899999999999999999986 46789999998877644 2323221
Q ss_pred cCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 150 ~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+ ......+.+.|.. .+.||+|++---- +. ..|. +.+.. +++.|+|||.|++.+
T Consensus 164 -----~~~-~~~lplgvE~Lp~-~~~FDtVF~MGVLYHr-r~Pl------~~L~~-Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 164 -----DPP-VFELPLGVEDLPN-LGAFDTVFSMGVLYHR-RSPL------DHLKQ-LKDSLRPGGELVLET 219 (315)
T ss_pred -----Ccc-EEEcCcchhhccc-cCCcCEEEEeeehhcc-CCHH------HHHHH-HHHhhCCCCEEEEEE
Confidence 122 2333456666766 6789999986431 11 1332 66777 899999999998775
No 169
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.56 E-value=1.4e-08 Score=88.73 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVIIG 181 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~Ii~ 181 (297)
-+++||||||||..+..+... ..++++||||..|++.|.+.=.+ =++.++|+..|+. ..+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y---------D~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY---------DTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch---------HHHHHHHHHHHhhhccCCcccchhh
Confidence 589999999999999887765 57899999999999999874211 1467788888997 45789999975
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
--.-+.- ..| ..+|.. +...|+|||.|++.+
T Consensus 195 aDVl~Yl----G~L--e~~~~~-aa~~L~~gGlfaFSv 225 (287)
T COG4976 195 ADVLPYL----GAL--EGLFAG-AAGLLAPGGLFAFSV 225 (287)
T ss_pred hhHHHhh----cch--hhHHHH-HHHhcCCCceEEEEe
Confidence 3221211 122 235555 689999999998875
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.56 E-value=7.7e-07 Score=82.05 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=73.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+||+||||.|.++..+++. ..+|+++|+|+++++.+++.+.... ..++++++.+|+.+.- -.+||.|+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~~~~d~Vv 106 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---FPYFDVCV 106 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---ccccCEEE
Confidence 45678999999999999999985 4689999999999999999876432 1368999999987642 24689999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcc-cCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGvl~~~ 218 (297)
.+++-.. -+...++. +.. ..-...+++++
T Consensus 107 aNlPY~I--------stpil~~l-l~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 107 ANVPYQI--------SSPLVFKL-LAHRPLFRCAVLMFQ 136 (294)
T ss_pred ecCCccc--------CcHHHHHH-HhcCCCCceeeeeeh
Confidence 9876322 23345554 432 22235566666
No 171
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.55 E-value=4.1e-07 Score=88.37 Aligned_cols=105 Identities=19% Similarity=0.307 Sum_probs=72.3
Q ss_pred CCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+.|||+|+|+|.+...+++. ....+|.+||-||.++...++....++ + +++|+++.+|.+++- .+++.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w-~~~V~vi~~d~r~v~--lpekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--W-GDKVTVIHGDMREVE--LPEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--T-TTTEEEEES-TTTSC--HSS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--C-CCeEEEEeCcccCCC--CCCceeE
Confidence 467999999999998776653 235799999999998887766543332 2 368999999998863 3569999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
|++-+.... + ... ...|-+.. ..+.|+|||+++=
T Consensus 262 IVSElLGsf--g-~nE-l~pE~Lda-~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 262 IVSELLGSF--G-DNE-LSPECLDA-ADRFLKPDGIMIP 295 (448)
T ss_dssp EEE---BTT--B-TTT-SHHHHHHH-GGGGEEEEEEEES
T ss_pred EEEeccCCc--c-ccc-cCHHHHHH-HHhhcCCCCEEeC
Confidence 999987432 1 123 34567777 7899999998863
No 172
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=2.3e-06 Score=79.99 Aligned_cols=147 Identities=21% Similarity=0.189 Sum_probs=102.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++..|||+-+|-|.++..++++.. .+|.++||||..++..++++.++.. ..++..+.+|++++.... ..+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v---~~~v~~i~gD~rev~~~~-~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKV---EGRVEPILGDAREVAPEL-GVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCc---cceeeEEeccHHHhhhcc-ccCCEEE
Confidence 4589999999999999999998754 3499999999999999999988852 356999999999988654 7799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE-EecCcc-CCc
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADT 258 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~-~~vp~~-~~~ 258 (297)
+..+.. +.+|+.. +.+.|+++|++-.....+...........+.....+.-..+.... -.+.+| ++.
T Consensus 262 m~~p~~----------a~~fl~~-A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v 330 (341)
T COG2520 262 MGLPKS----------AHEFLPL-ALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGV 330 (341)
T ss_pred eCCCCc----------chhhHHH-HHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCe
Confidence 987631 2367777 789999999998876544211111123333333333322233332 345666 455
Q ss_pred eeEEE
Q 022451 259 WGWIM 263 (297)
Q Consensus 259 ~~~~~ 263 (297)
|.+.+
T Consensus 331 ~hv~v 335 (341)
T COG2520 331 YHVVV 335 (341)
T ss_pred eEEEE
Confidence 55543
No 173
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.52 E-value=3.3e-07 Score=77.08 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=55.8
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-C-CceEEEEc
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-~-~yD~Ii~D 182 (297)
.|+|+.||.|+-+.++++.+ .+|++||+||.-++.|+.+....+ -..|++++++|..+.++... . .||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 58999999999999999974 689999999999999999977543 14789999999999886532 2 28999999
Q ss_pred CC
Q 022451 183 LA 184 (297)
Q Consensus 183 ~~ 184 (297)
+|
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 85
No 174
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.51 E-value=2.6e-07 Score=82.41 Aligned_cols=98 Identities=22% Similarity=0.233 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
...++|+|||+|.|.++..+++.+|..++++.|+ |.+++.+++ .+|++++.+|.+ ...+. +|+|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence 4567999999999999999999888999999999 999999988 279999999965 33344 99998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCC--cEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pg--Gvl~~~~ 219 (297)
+--. +.|. + =-....++. +++.|+|| |.|++..
T Consensus 164 l~~vLh~~~--d---~~~~~iL~~-~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 164 LRHVLHDWS--D---EDCVKILRN-AAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEEE
T ss_pred eehhhhhcc--h---HHHHHHHHH-HHHHhCCCCCCeEEEEe
Confidence 8654 2231 1 112467888 79999998 9888774
No 175
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.51 E-value=3.2e-07 Score=79.26 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=65.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~I 179 (297)
+++.+|||||||+|.++..+++.. ..+++++|+++.+++.|++ .+++++.+|+.+.+. ..+++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccccCCCCcCEE
Confidence 456799999999999998887654 4578999999999998874 246788899876443 235689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP 211 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p 211 (297)
++...-.+... ...++++ +.+.+++
T Consensus 80 i~~~~l~~~~d------~~~~l~e-~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRN------PEEILDE-MLRVGRH 104 (194)
T ss_pred EEhhHhHcCcC------HHHHHHH-HHHhCCe
Confidence 99864322111 2356666 5665543
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.48 E-value=5e-07 Score=81.72 Aligned_cols=74 Identities=18% Similarity=0.364 Sum_probs=61.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+||+||||.|.++..+++. ..+|++||+|+.+++.+++.+.. .++++++.+|+.++- -..||.|+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv 96 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVV 96 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEE
Confidence 45689999999999999999987 36899999999999999987642 368999999987641 23589999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
.+++-
T Consensus 97 ~NlPy 101 (258)
T PRK14896 97 SNLPY 101 (258)
T ss_pred EcCCc
Confidence 99763
No 177
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.5e-07 Score=76.96 Aligned_cols=118 Identities=20% Similarity=0.224 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCCCCe
Q 022451 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSDPRL 158 (297)
Q Consensus 87 ~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~~rv 158 (297)
.|.+.|-.+-- ...++-+.|++|.|+|.++.-+... .+.....+||.-|++++.+++++... ...++..++
T Consensus 68 mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 68 MHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 45555543221 1257789999999999997666643 23344489999999999999987532 233667899
Q ss_pred EEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 159 ELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 159 ~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.++++|++.--. ...+||.|.+-+..+. .-+. +-..|++||.+++-.
T Consensus 147 ~ivvGDgr~g~~-e~a~YDaIhvGAaa~~------------~pq~-l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 147 SIVVGDGRKGYA-EQAPYDAIHVGAAASE------------LPQE-LLDQLKPGGRLLIPV 193 (237)
T ss_pred EEEeCCccccCC-ccCCcceEEEccCccc------------cHHH-HHHhhccCCeEEEee
Confidence 999999987543 4578999999875432 2234 567899999888754
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.42 E-value=7.2e-07 Score=81.37 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=59.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. .+|+++|+|+.+++.+++.+. +++++++.+|+.++- ..+-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~-~~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVD-LSELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCC-HHHcCcceEE
Confidence 466799999999999999999874 389999999999999998652 268999999987652 1111158899
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
.+++
T Consensus 111 ~NlP 114 (272)
T PRK00274 111 ANLP 114 (272)
T ss_pred EeCC
Confidence 8875
No 179
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2.2e-06 Score=82.91 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=85.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~I 179 (297)
...++||+=||.|.++..+++. ..+|++||+++.+++.|+++...++ -.|++++.+|+.++.... ...+|+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHHhhhccccCCCCEE
Confidence 4578999999999999999964 6899999999999999999987764 355999999999998764 3578999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
++|++.. -..+++.+. + ..++|..++.+.+++
T Consensus 367 vvDPPR~--------G~~~~~lk~-l-~~~~p~~IvYVSCNP 398 (432)
T COG2265 367 VVDPPRA--------GADREVLKQ-L-AKLKPKRIVYVSCNP 398 (432)
T ss_pred EECCCCC--------CCCHHHHHH-H-HhcCCCcEEEEeCCH
Confidence 9998742 124578887 3 688999999888654
No 180
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=2e-06 Score=77.44 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++..||+||+|.|.++..+++. ..+|++||+|+.+++..++.+.. .++++++.+|+..+=-..-.+++.|+.
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~~~l~~~~~vVa 101 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDFPSLAQPYKVVA 101 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcchhhcCCCEEEE
Confidence 3689999999999999999996 46899999999999999998752 278999999986642111116899999
Q ss_pred cCC
Q 022451 182 DLA 184 (297)
Q Consensus 182 D~~ 184 (297)
+++
T Consensus 102 NlP 104 (259)
T COG0030 102 NLP 104 (259)
T ss_pred cCC
Confidence 986
No 181
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.39 E-value=1.2e-06 Score=76.33 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=86.9
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+.=|||||||+|..+..+... .-...+|||+|.|++.|.+. ... -.++.+|--+-+....+.||.+|+-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEEe
Confidence 667999999999999887764 36789999999999999862 111 2366677656666677899987765
Q ss_pred CCCCC-------CCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHH-HHHhhCCce
Q 022451 183 LADPI-------EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN-TLRQVFKYV 245 (297)
Q Consensus 183 ~~~~~-------~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~-~l~~~F~~v 245 (297)
..-.| ...|...| ..||.. +..+|++|+..+++..+. +..+...+.+ ++++-|..-
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl--~~FF~t-Ly~~l~rg~raV~QfYpe----n~~q~d~i~~~a~~aGF~GG 183 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRL--LRFFGT-LYSCLKRGARAVLQFYPE----NEAQIDMIMQQAMKAGFGGG 183 (270)
T ss_pred eeeeeecccCccccChHHHH--HHHhhh-hhhhhccCceeEEEeccc----chHHHHHHHHHHHhhccCCc
Confidence 54332 12232233 368998 899999999999997643 3344444444 455557653
No 182
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=9.3e-06 Score=68.80 Aligned_cols=127 Identities=21% Similarity=0.216 Sum_probs=91.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++=+|+||||+|.++..+.+. .+.....+.||||...+..++-...+ .-++..+..|...-++. ++.|++
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~--~~VDvL 114 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN--ESVDVL 114 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc--CCccEE
Confidence 34788999999999998888874 45667889999999999877765443 35688999998888865 889999
Q ss_pred EEcCC-CCCCCCC--------------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLA-DPIEGGP--------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~-~~~~~~p--------------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+.+++ .|....+ ...-.+..++.+ +...|+|.|++.+.... ....+++++.+++.
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~~------~N~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVALR------ANKPKEILKILEKK 184 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeehh------hcCHHHHHHHHhhc
Confidence 99986 2321111 111224567777 78999999999887532 12235666666654
No 183
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.4e-06 Score=81.07 Aligned_cols=122 Identities=24% Similarity=0.148 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-ch
Q 022451 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DA 165 (297)
Q Consensus 87 ~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da 165 (297)
.+.+.|+.++ ...++..|||=-||||+++.++.-. ..++.+.|+|.+|++-|+.++...+ -+...++.. ||
T Consensus 184 ~lAR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da 255 (347)
T COG1041 184 RLARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDA 255 (347)
T ss_pred HHHHHHHHHh--ccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhC----cCceeEEEeccc
Confidence 3556666543 3356789999999999999998865 4789999999999999999997652 245656666 87
Q ss_pred HHHHhccCCCceEEEEcCCCCCCCC-C---ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 166 RAELESRKESYDVIIGDLADPIEGG-P---CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 166 ~~~l~~~~~~yD~Ii~D~~~~~~~~-p---~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.. ++-.+.++|.|+.|+|-...+. . ...|+ .++++. +.++|++||.+++..
T Consensus 256 ~~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~-~~evLk~gG~~vf~~ 310 (347)
T COG1041 256 TN-LPLRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALES-ASEVLKPGGRIVFAA 310 (347)
T ss_pred cc-CCCCCCccceEEecCCCCcccccccccHHHHH-HHHHHH-HHHHhhcCcEEEEec
Confidence 54 4433457999999998432211 1 12344 478888 899999999999874
No 184
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.38 E-value=1.5e-06 Score=73.91 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=65.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--h-ccCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--E-SRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l--~-~~~~~y 176 (297)
...+++||+||||+|..+..+++..+..+|++-|.++ +++.++.+...+.. ...+++++..-|.-+.+ . ....+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccC
Confidence 3568899999999999998888875678999999999 99999998876532 23467777665532212 1 124689
Q ss_pred eEEEEc-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+.. ..- . .-.-..+++. +++.|+++|.+++.
T Consensus 121 D~IlasDv~Y----~---~~~~~~L~~t-l~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 121 DVILASDVLY----D---EELFEPLVRT-LKRLLKPNGKVLLA 155 (173)
T ss_dssp SEEEEES--S--------GGGHHHHHHH-HHHHBTT-TTEEEE
T ss_pred CEEEEecccc----h---HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 998864 221 1 1123467777 79999999875544
No 185
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.38 E-value=2.1e-06 Score=76.05 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=77.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--------cCCCCCCCeEEEEcchHHHHh--
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEAFSDPRLELVINDARAELE-- 170 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~--------~~~~~~~rv~~~~~Da~~~l~-- 170 (297)
+++.+||+.|||.|.-+..|++. .-+|++||+++..++.+.+..... ...+...+++++++|.+++=.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999986 357999999999999886632110 001234579999999887521
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
...++||+|+--.+-.. -| .. ....+.+. +.+.|+|||.+++-
T Consensus 120 ~~~~~fD~VyDra~~~A--lp-p~-~R~~Y~~~-l~~lL~pgg~llll 162 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIA--LP-ND-LRTNYAKM-MLEVCSNNTQILLL 162 (226)
T ss_pred cccCCcCeeeeehhHhc--CC-HH-HHHHHHHH-HHHHhCCCcEEEEE
Confidence 12357999875544211 12 12 24567888 89999999977654
No 186
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.36 E-value=1e-06 Score=75.22 Aligned_cols=125 Identities=19% Similarity=0.299 Sum_probs=73.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-----HHHHhc----
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES---- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-----~~~l~~---- 171 (297)
.+.+|||||++.|+++..++++. +..+|.+||+.+. .- .+.+..+.+|. .+.+..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~---------~~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP---------LQNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc---------ccceeeeecccchhhHHHhhhhhccc
Confidence 56899999999999999999875 4689999999877 10 12333333442 122222
Q ss_pred cCCCceEEEEcCCCCCCCCCc------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 172 RKESYDVIIGDLADPIEGGPC------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
..+++|+|++|........+. ..|. ..-+.. +.+.|+|||.+++..- ..... ..++..++..|..+
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~-a~~~L~~gG~~v~K~~-----~~~~~-~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLI-LSQLLL-ALELLKPGGTFVIKVF-----KGPEI-EELIYLLKRCFSKV 159 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHHH-HHHHHH-HHHHHCTTEEEEEEES-----SSTTS-HHHHHHHHHHHHHE
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHHH-HHHHHH-HHhhhcCCCEEEEEec-----cCccH-HHHHHHHHhCCeEE
Confidence 236899999998532211110 0111 112223 4578999998888752 22222 37777788888887
Q ss_pred eEEE
Q 022451 246 VPYS 249 (297)
Q Consensus 246 ~~~~ 249 (297)
..+.
T Consensus 160 ~~~K 163 (181)
T PF01728_consen 160 KIVK 163 (181)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.33 E-value=3.7e-06 Score=75.81 Aligned_cols=73 Identities=22% Similarity=0.371 Sum_probs=59.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce---
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD--- 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD--- 177 (297)
.++.+||+||||+|.++..+++.. .+++++|+|+.+++.+++.+.. .++++++.+|+.++-. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence 467899999999999999999875 4699999999999999987642 3689999999866421 2466
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+|+.+++
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888865
No 188
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.33 E-value=1.7e-06 Score=69.65 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=65.1
Q ss_pred CeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHH
Q 022451 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN 236 (297)
Q Consensus 157 rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~ 236 (297)
+++++.+|+++.++....++|+|+.|.++|.. . ..+++.++|+. +.++++|||+++..+.. ..+.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-n--PelWs~e~~~~-l~~~~~~~~~l~Tys~a----------~~Vr~ 97 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-N--PELWSEELFKK-LARLSKPGGTLATYSSA----------GAVRR 97 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-S--GGGSSHHHHHH-HHHHEEEEEEEEES--B----------HHHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-C--cccCCHHHHHH-HHHHhCCCcEEEEeech----------HHHHH
Confidence 46789999999998877899999999998862 3 47999999999 89999999999987421 35667
Q ss_pred HHHhhCCceeEEEEecCccCCceeEEEEec
Q 022451 237 TLRQVFKYVVPYSAHIPSFADTWGWIMVSI 266 (297)
Q Consensus 237 ~l~~~F~~v~~~~~~vp~~~~~~~~~~as~ 266 (297)
.|.+..=.|. ..|.++.-...+.|++
T Consensus 98 ~L~~aGF~v~----~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 98 ALQQAGFEVE----KVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHCTEEEE----EEE-STTSSEEEEEEC
T ss_pred HHHHcCCEEE----EcCCCCCcchheEEEc
Confidence 7777633332 4566766566676665
No 189
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.31 E-value=2.1e-06 Score=75.77 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=76.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hhhhcc-------CCCCCCCeEEEEcchHHHHhc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS-YLVVNK-------EAFSDPRLELVINDARAELES 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~-~f~~~~-------~~~~~~rv~~~~~Da~~~l~~ 171 (297)
.+.+.+||+.|||.|.-+..+++. .-+|++||+++..++.+.+ +..... ....+.+++++++|.+++-..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456679999999999999999986 3689999999999999843 221110 012356899999998875433
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEE
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl 215 (297)
..++||+|+=-.+-.. .| .-...++.+. +.+.|+|||.+
T Consensus 113 ~~g~fD~iyDr~~l~A--lp--p~~R~~Ya~~-l~~ll~p~g~~ 151 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCA--LP--PEMRERYAQQ-LASLLKPGGRG 151 (218)
T ss_dssp CHHSEEEEEECSSTTT--S---GGGHHHHHHH-HHHCEEEEEEE
T ss_pred hcCCceEEEEeccccc--CC--HHHHHHHHHH-HHHHhCCCCcE
Confidence 3357999986544221 22 2235578888 89999999983
No 190
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.31 E-value=7.5e-06 Score=71.14 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=80.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
.++.+||.+|.|-|.+...+.+..|. +-+.+|-.|.|....|..-.. +..+|.+..+-..+.+.. .++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence 67899999999999999888887655 557799999999999987432 236777777655555543 34669999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.|.+.+.. --.++|++. +-+.|||+|++...
T Consensus 174 ~yDTy~e~y------Edl~~~hqh-~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDTYSELY------EDLRHFHQH-VVRLLKPEGVFSYF 205 (271)
T ss_pred EeechhhHH------HHHHHHHHH-HhhhcCCCceEEEe
Confidence 999985431 124589998 89999999999754
No 191
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.29 E-value=4e-06 Score=77.15 Aligned_cols=78 Identities=23% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC---Cc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE---SY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~---~y 176 (297)
.++..++|++||.|+.+..+++..+ ..+|+++|.||.+++.|++.+.. ..|++++++|..++.....+ ++
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 3456899999999999999998753 67999999999999999987532 26899999999887644322 79
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|.|+.|+-
T Consensus 92 DgIl~DLG 99 (296)
T PRK00050 92 DGILLDLG 99 (296)
T ss_pred CEEEECCC
Confidence 99999984
No 192
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.26 E-value=4.2e-06 Score=71.66 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcE---------EEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEK---------VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~---------v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~ 171 (297)
.+...+||--||+|+++.+++....... +.++|+|+.+++.|++++...+ -...+.+...|++++- .
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~-~ 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP-L 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-G
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc-c
Confidence 4567899999999999988876433333 8999999999999999987543 1356899999988754 3
Q ss_pred cCCCceEEEEcCCCCCCCCC---ccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 172 RKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p---~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..+.+|+|+.|+|-....+. ...|| .+|++. +++.|++..++++.
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~-~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRE-LKRVLKPRAVFLTT 150 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHH-HHCHSTTCEEEEEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHH-HHHHCCCCEEEEEE
Confidence 45689999999974332111 11333 467788 78999995555544
No 193
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.24 E-value=8.1e-06 Score=83.35 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=79.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcC-------C-----CcEEEEEECCHHH---HHHH-----------Hhhhhh-c----c
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK-------T-----VEKVVMCDIDEEV---VEFC-----------KSYLVV-N----K 150 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-------~-----~~~v~~VEid~~v---i~~a-----------~~~f~~-~----~ 150 (297)
..-+||++|.|+|.....+.+.. + .-+++.+|.+|.. +..+ ++.... + +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999998654444221 1 2489999986622 2211 111100 0 0
Q ss_pred ---CCCCCC--CeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 151 ---EAFSDP--RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 151 ---~~~~~~--rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+.+. +++++.+|+++.++....++|+|++|.|+|.. . ..+++.++|+. +.++++|||+++..+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-n--p~~W~~~~~~~-l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-N--PDMWSPNLFNA-LARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-C--hhhccHHHHHH-HHHHhCCCCEEEEee
Confidence 012233 45688999999998766779999999998862 2 48999999999 899999999999875
No 194
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.24 E-value=5.3e-06 Score=74.29 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=67.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...++||||+|+|.++..+..++ .+|++-|+++.|....++. ..+++-.| + ..+.+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~-w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--D-WQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--h-hhccCCceEEEee
Confidence 46789999999999999998875 6799999999998665542 23444333 2 2334578999976
Q ss_pred c-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 D-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
- .-|-. ..| ...++. +++.|+|+|++++-.
T Consensus 158 LNvLDRc-~~P------~~LL~~-i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNVLDRC-DRP------LTLLRD-IRRALKPNGRLILAV 188 (265)
T ss_pred hhhhhcc-CCH------HHHHHH-HHHHhCCCCEEEEEE
Confidence 3 22321 133 256788 899999999887653
No 195
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.19 E-value=4.5e-05 Score=72.17 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---------- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---------- 171 (297)
.+.+|||+-||.|.++..+++. ..+|++||+++.+++.|+++...++ -.+++++.+++.++...
T Consensus 196 ~~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~~ 269 (352)
T PF05958_consen 196 SKGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNRL 269 (352)
T ss_dssp -TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTTG
T ss_pred CCCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHhh
Confidence 3458999999999999999986 5799999999999999999988764 36899999887655321
Q ss_pred -----cCCCceEEEEcCCC
Q 022451 172 -----RKESYDVIIGDLAD 185 (297)
Q Consensus 172 -----~~~~yD~Ii~D~~~ 185 (297)
...++|+|++|||.
T Consensus 270 ~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 270 KGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp GGS-GGCTTESEEEE---T
T ss_pred hhhhhhhcCCCEEEEcCCC
Confidence 12368999999874
No 196
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.18 E-value=1.9e-06 Score=66.97 Aligned_cols=97 Identities=22% Similarity=0.160 Sum_probs=45.2
Q ss_pred EEEccchhHHHHHHHhcCC-C--cEEEEEECCHH---HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-CCceEE
Q 022451 107 FIMGGGEGSTAREILRHKT-V--EKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI 179 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~-~--~~v~~VEid~~---vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-~~yD~I 179 (297)
|+||+..|..+..+++..+ . .++++||..+. .-+..++ ... ..+++++.+|..+++..-. ++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~------~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL------SDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------GGG-------BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC------CCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 6799889998877776422 2 37999999995 3333333 111 3579999999998887644 799999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++|..... -.....++. +.++|+|||++++.
T Consensus 74 ~iDg~H~~-------~~~~~dl~~-~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSY-------EAVLRDLEN-ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---H-------HHHHHHHHH-HGGGEEEEEEEEEE
T ss_pred EECCCCCH-------HHHHHHHHH-HHHHcCCCeEEEEe
Confidence 99975321 123456777 78999999999875
No 197
>PRK10742 putative methyltransferase; Provisional
Probab=98.17 E-value=2.9e-05 Score=69.43 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=67.0
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-c-CCCCC---CCeEEEEcchHHHHhccCCCceEE
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-K-EAFSD---PRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-~-~~~~~---~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
+|||+-+|.|..+.+++.. .++|++||-+|.+..+.++.+... . ..... .|++++.+|+.+||+...+.||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999986 356999999999999999887631 1 01111 579999999999998766789999
Q ss_pred EEcCCCCC
Q 022451 180 IGDLADPI 187 (297)
Q Consensus 180 i~D~~~~~ 187 (297)
++|++-|.
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 99998665
No 198
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.5e-05 Score=70.18 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=96.3
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhccC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK 173 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~~ 173 (297)
++...++..||+-|.|+|++..++++. .|..++...|....-.+.|++.|.... -..++++.+.|... |.. ..
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc~~GF~~-ks 175 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVCGSGFLI-KS 175 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecccCCccc-cc
Confidence 344567789999999999999999984 567899999999999999999887553 24789999988754 332 25
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh-hCCceeEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKYVVPY 248 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~-~F~~v~~~ 248 (297)
..+|.|++|++.||.+.|. +..+|+.+|.-+.+. +| .-++.++-...+++ -|-.+...
T Consensus 176 ~~aDaVFLDlPaPw~AiPh------------a~~~lk~~g~r~csF-SP----CIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 176 LKADAVFLDLPAPWEAIPH------------AAKILKDEGGRLCSF-SP----CIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred cccceEEEcCCChhhhhhh------------hHHHhhhcCceEEec-cH----HHHHHHHHHHHHHhCCCceEEEE
Confidence 7899999999999966552 345888888655554 23 24556666666666 36665444
No 199
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.11 E-value=7.2e-06 Score=76.06 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=74.2
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+.+.|||+|||+|.++..+++.. ..+|.+||-+..+ +.|++-+..++ -+..++++.+.+.+. .-+-++.|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~---~~~ii~vi~gkvEdi-~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG---LEDVITVIKGKVEDI-ELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC---ccceEEEeecceEEE-ecCccceeEEee
Confidence 67899999999999999999874 7899999997655 88888776554 235789998887665 223589999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
..-.-+ -..+.+++.-.|.. -+-|+|||.+.
T Consensus 134 EWMGy~--Ll~EsMldsVl~AR--dkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYF--LLYESMLDSVLYAR--DKWLKEGGLIY 164 (346)
T ss_pred hhhhHH--HHHhhhhhhhhhhh--hhccCCCceEc
Confidence 764211 00011222222332 48999999875
No 200
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.10 E-value=1.1e-05 Score=72.47 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=63.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.-||++|.|+|.++..+++. +++|.++|+||.|+....+.+.... ...+++++++| +++.....||.++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD---~lK~d~P~fd~cV 128 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGD---FLKTDLPRFDGCV 128 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEecc---cccCCCcccceee
Confidence 56778999999999999999986 5799999999999988877765321 24689999999 4655557899999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
.+++-
T Consensus 129 sNlPy 133 (315)
T KOG0820|consen 129 SNLPY 133 (315)
T ss_pred ccCCc
Confidence 98874
No 201
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=6.6e-05 Score=71.10 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC--C
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--E 174 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~--~ 174 (297)
...++.+|||++++.|+=+.+++..... ..|+++|+|+.=++..++++...+ -.++.++..|++.+..... .
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccccccC
Confidence 3456789999999999887777775433 456999999999999999876442 2458899999887654322 3
Q ss_pred CceEEEEcCCCCCC----CCCcc------------CcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHH
Q 022451 175 SYDVIIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~----~~p~~------------~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l 238 (297)
+||.|++|++-... ..|.. .-+..+++.. +.+.|+|||+|+..+++- ..+.-+.++..+
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~vV~~~ 303 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEVVERF 303 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHHHHHH
Confidence 69999999982211 11210 1123567777 689999999999887653 334445555555
Q ss_pred HhhCCce
Q 022451 239 RQVFKYV 245 (297)
Q Consensus 239 ~~~F~~v 245 (297)
-+..+..
T Consensus 304 L~~~~~~ 310 (355)
T COG0144 304 LERHPDF 310 (355)
T ss_pred HHhCCCc
Confidence 5454443
No 202
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=5.7e-06 Score=72.55 Aligned_cols=101 Identities=26% Similarity=0.425 Sum_probs=79.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe--EEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv--~~~~~Da~~~l~~~~~~yD~ 178 (297)
.....+++|||+-|.+.+.+... ++.+++.+|.+..|++.|+.- .||.+ ...++| .++|.-...++|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DL 140 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDL 140 (325)
T ss_pred hhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhh
Confidence 34567999999999999999986 488999999999999998863 34554 456777 5677666789999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|++.+.-+|.. .|- ..+.. |+..|||+|.++..
T Consensus 141 iisSlslHW~N----dLP--g~m~~-ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 141 IISSLSLHWTN----DLP--GSMIQ-CKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhc----cCc--hHHHH-HHHhcCCCccchhH
Confidence 99999878732 221 45666 69999999999754
No 203
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.06 E-value=9.6e-06 Score=68.05 Aligned_cols=81 Identities=10% Similarity=-0.018 Sum_probs=57.9
Q ss_pred EEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccC
Q 022451 130 VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209 (297)
Q Consensus 130 ~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L 209 (297)
+++|+++.|++.|++........ ..++++++.+|+.+. ...++.||+|++...-++. + --.+++++ ++++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~--~----d~~~~l~e-i~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNV--V----DRLRAMKE-MYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC-CCCCCCeeEEEecchhhcC--C----CHHHHHHH-HHHHc
Confidence 48999999999998765422100 125799999998764 4456789999987543221 1 12478899 89999
Q ss_pred CCCcEEEEec
Q 022451 210 NPEGIFVTQA 219 (297)
Q Consensus 210 ~pgGvl~~~~ 219 (297)
+|||.+++..
T Consensus 72 kpGG~l~i~d 81 (160)
T PLN02232 72 KPGSRVSILD 81 (160)
T ss_pred CcCeEEEEEE
Confidence 9999998764
No 204
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.06 E-value=2.2e-05 Score=72.02 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC--CCCeEEEEcchHHHH-----hcc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--DPRLELVINDARAEL-----ESR 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--~~rv~~~~~Da~~~l-----~~~ 172 (297)
.++...+|+||||-|+-++...+. +...++++||....++-|++.......... .=.+.++.+|...-. ...
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 366788999999999887766664 578999999999999999886542210000 013689999985432 112
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+||+|-+--.-+..-.. .---+-+++. +.++|+|||+++-..
T Consensus 194 dp~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGTI 237 (389)
T ss_pred CCCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEec
Confidence 3449998765432210000 0001246777 789999999998763
No 205
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.04 E-value=8e-06 Score=76.49 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=70.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC-----CCCeEEEEcchHHH-Hhc---
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-----DPRLELVINDARAE-LES--- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~-----~~rv~~~~~Da~~~-l~~--- 171 (297)
++.+|||||||-|+-+.-.... +..+++++||++..++-|++... ....... +=...++.+|+..- |..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999977755444443 47899999999999999988762 1110000 11356788887532 221
Q ss_pred -cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 172 -~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...+||+|-+-..-+..-. ..-..+.+++. +.++|+|||+++..+
T Consensus 141 ~~~~~FDvVScQFalHY~Fe--se~~ar~~l~N-vs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFE--SEEKARQFLKN-VSSLLKPGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGS--SHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcC--CHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 2358999988754322000 01112458888 799999999998775
No 206
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.01 E-value=3.7e-05 Score=76.46 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=56.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCC--------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH----
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKT--------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---- 169 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l---- 169 (297)
...+|||.|||+|.+...++...+ ..+++++|+|+.++..|+..+.... ....++..+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 456899999999999887775421 2578999999999999998875432 123566666643321
Q ss_pred hccCCCceEEEEcCC
Q 022451 170 ESRKESYDVIIGDLA 184 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~ 184 (297)
....++||+|+.++|
T Consensus 107 ~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 107 ESYLDLFDIVITNPP 121 (524)
T ss_pred ccccCcccEEEeCCC
Confidence 112357999999997
No 207
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.00 E-value=9.2e-06 Score=75.20 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=80.9
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-------CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~ 171 (297)
......+|||-+||+|+++.++.++ ....++.++|+|+.++.+|+-++.+.+. ......+..+|....-..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l~~~~~ 120 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSLENDKF 120 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TTTSHSC
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--cccccccccccccccccc
Confidence 3345568999999999998887763 2467999999999999999987654321 123456888986543222
Q ss_pred c-CCCceEEEEcCCCCCC--CCC-------------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHH
Q 022451 172 R-KESYDVIIGDLADPIE--GGP-------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (297)
Q Consensus 172 ~-~~~yD~Ii~D~~~~~~--~~p-------------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~ 235 (297)
. .++||+|+.++|-... ... ...-....|++. +.+.|++||.+++-.. .+..........++
T Consensus 121 ~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~Ilp-~~~L~~~~~~~~iR 198 (311)
T PF02384_consen 121 IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAIILP-NGFLFSSSSEKKIR 198 (311)
T ss_dssp TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHGSTHHHHHH
T ss_pred ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEEec-chhhhccchHHHHH
Confidence 2 4689999999873211 000 000112247788 6899999998766531 11111222334555
Q ss_pred HHHHhh
Q 022451 236 NTLRQV 241 (297)
Q Consensus 236 ~~l~~~ 241 (297)
+.|-+.
T Consensus 199 ~~ll~~ 204 (311)
T PF02384_consen 199 KYLLEN 204 (311)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555544
No 208
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.99 E-value=0.00011 Score=63.29 Aligned_cols=100 Identities=21% Similarity=0.362 Sum_probs=72.9
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
.+++|||.|+|.=+.-++=..|..+++.||....=+...+.-.... +-++++++.+.+.+ .....+||+|++-+
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEYRESFDVVTARA 123 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cccCCCccEEEeeh
Confidence 3899999999964443333346789999999998887766654422 23579999999887 34568899999998
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+. ..++.. +...|++||.++..-+
T Consensus 124 v~~l----------~~l~~~-~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 124 VAPL----------DKLLEL-ARPLLKPGGRLLAYKG 149 (184)
T ss_dssp SSSH----------HHHHHH-HGGGEEEEEEEEEEES
T ss_pred hcCH----------HHHHHH-HHHhcCCCCEEEEEcC
Confidence 7432 256677 7899999999988765
No 209
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00011 Score=63.99 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=85.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-----HHhc--c
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-----ELES--R 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-----~l~~--~ 172 (297)
.....|+|||+..|++++.+.+.. +...|++||+.|.- ..+.|.++.+|.+. -|.. .
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 567899999999999999999863 33459999998643 12568888888632 2222 2
Q ss_pred CCCceEEEEcCCCCCCCCCc-cCcc----cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~-~~L~----t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
..++|+|++|.......... .+.. ....++. +...|+|+|.+++.. .+.+....++..+++.|..+..
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~------fqg~~~~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV------FQGEDFEDLLKALRRLFRKVKI 181 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE------EeCCCHHHHHHHHHHhhceeEE
Confidence 34579999998743221110 1111 1112233 468999999998874 3455668899999999998875
Q ss_pred EE
Q 022451 248 YS 249 (297)
Q Consensus 248 ~~ 249 (297)
..
T Consensus 182 ~K 183 (205)
T COG0293 182 FK 183 (205)
T ss_pred ec
Confidence 53
No 210
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.92 E-value=6.4e-05 Score=68.47 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=64.3
Q ss_pred CCCeEEEEccchhHHHHHHH-h-cCCCcEEEEEECCHHHHHHHHhhhh-hccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREIL-R-HKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~-~-~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.|++|+.||+|.=-++.-++ + +.+...|+.+|+||+.++.+++-.. ..+ + ..+++++.+|+...-. .-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L-~~~m~f~~~d~~~~~~-dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--L-SKRMSFITADVLDVTY-DLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--SSEEEEES-GGGG-G-G----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--c-cCCeEEEecchhcccc-ccccCCE
Confidence 47899999999766654444 3 3446789999999999999998765 221 1 4789999999866432 2367999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++.+.......+ ..+.++. +.+.++||..+++-.
T Consensus 196 V~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred EEEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence 9998874321122 3578888 799999999999874
No 211
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.91 E-value=0.00013 Score=67.06 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=97.2
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCc
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESY 176 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~y 176 (297)
...+...|||+++|.|+=+.+++... ....|+++|+++.-+...++++...+ -.++.+...|++.+.... ...|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeecccccccccccccc
Confidence 34566889999999999887777753 36799999999999999998876432 367888889999886543 3469
Q ss_pred eEEEEcCCCCC----CCCCcc------------CcccHHHHHHHHcccC----CCCcEEEEecCCCCCcCCchHHHHHHH
Q 022451 177 DVIIGDLADPI----EGGPCY------------KLYTKSFYEFVVKPRL----NPEGIFVTQAGPAGIFSHTEVFSCIYN 236 (297)
Q Consensus 177 D~Ii~D~~~~~----~~~p~~------------~L~t~ef~~~~~~~~L----~pgGvl~~~~~~p~~~~~~~~~~~i~~ 236 (297)
|.|++|++-.. ...|.. .-...+.++. +.+.| +|||+++..+++ ...+.-+.+++
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS----~~~eENE~vV~ 232 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCS----LSPEENEEVVE 232 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESH----HHGGGTHHHHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEecc----HHHHHHHHHHH
Confidence 99999998221 112210 0123557777 68899 999999887753 23344455666
Q ss_pred HHHhhCCcee
Q 022451 237 TLRQVFKYVV 246 (297)
Q Consensus 237 ~l~~~F~~v~ 246 (297)
.+-+.++...
T Consensus 233 ~fl~~~~~~~ 242 (283)
T PF01189_consen 233 KFLKRHPDFE 242 (283)
T ss_dssp HHHHHSTSEE
T ss_pred HHHHhCCCcE
Confidence 6555666654
No 212
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.90 E-value=0.00031 Score=61.71 Aligned_cols=144 Identities=17% Similarity=0.240 Sum_probs=91.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHH----HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEV----VEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~v----i~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~ 173 (297)
.++.+||-||.++|++...+... .+...|.+||.+|.. +.+|+++ +|+--+.+||+.--+- --
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----------~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----------PNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------TTEEEEES-TTSGGGGTTTS
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------CceeeeeccCCChHHhhccc
Confidence 56789999999999999988875 346799999999955 4555553 7888899999754322 13
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC--CCCC-cCCchHHHHHHHHHHhh-CCceeEEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG--PAGI-FSHTEVFSCIYNTLRQV-FKYVVPYS 249 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~--~p~~-~~~~~~~~~i~~~l~~~-F~~v~~~~ 249 (297)
+..|+|+.|...|. + .+-+... ++.-|++||.+++-.. +-++ ......++...+.|++. |.-.. .
T Consensus 142 ~~VDvI~~DVaQp~------Q--a~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e--~ 210 (229)
T PF01269_consen 142 EMVDVIFQDVAQPD------Q--ARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE--Q 210 (229)
T ss_dssp --EEEEEEE-SSTT------H--HHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE--E
T ss_pred ccccEEEecCCChH------H--HHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe--E
Confidence 58999999987553 1 1234455 6789999997775531 1100 12345777778888874 54332 2
Q ss_pred EecCccCCceeEEEEe
Q 022451 250 AHIPSFADTWGWIMVS 265 (297)
Q Consensus 250 ~~vp~~~~~~~~~~as 265 (297)
..+..|......+++.
T Consensus 211 i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 211 ITLEPYERDHAMVVGR 226 (229)
T ss_dssp EE-TTTSTTEEEEEEE
T ss_pred eccCCCCCCcEEEEEE
Confidence 3455565445555554
No 213
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.88 E-value=8.1e-05 Score=66.15 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=34.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF 141 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ 141 (297)
...+.|||+|||+|.++..+++. +..+|++||+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 35678999999999999999986 57899999999977654
No 214
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.84 E-value=3.4e-05 Score=69.96 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=60.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~ 178 (297)
.....||+||.|.|.+++++++.. .++++||+|+...+..++.+. .+++++++.+|+.++-... ..+...
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceE
Confidence 367899999999999999999975 899999999999999998765 2589999999987753221 235668
Q ss_pred EEEcCC
Q 022451 179 IIGDLA 184 (297)
Q Consensus 179 Ii~D~~ 184 (297)
|+.+++
T Consensus 101 vv~NlP 106 (262)
T PF00398_consen 101 VVGNLP 106 (262)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 888765
No 215
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.81 E-value=6.4e-05 Score=71.66 Aligned_cols=104 Identities=29% Similarity=0.334 Sum_probs=76.3
Q ss_pred CCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 103 PKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+-+|||.=+|+|.=+...+ +..+..+|++-|+||+.+++.++++.+++. .+.++++...||...+.....+||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence 4589998778887654444 435678999999999999999999987752 2348999999999998656789999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++. .|. .|+.. +.+.++.||+|.+..
T Consensus 128 DPfG----Sp~------pflds-A~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFG----SPA------PFLDS-ALQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS------H------HHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCC----Ccc------HhHHH-HHHHhhcCCEEEEec
Confidence 9984 332 68888 788999999998874
No 216
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=3.3e-05 Score=63.22 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=67.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-.++++++||||.|-+..... .+....|.++||||+.+++++++..... -++.+.+.|...... ..+.||..+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~-~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLEL-KGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhc-cCCeEeeEE
Confidence 468999999999999985555 4567899999999999999999865321 234566666443322 347899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCC
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~ 210 (297)
.|++.... ..-.+.+|.+. ..+..+
T Consensus 120 iNppFGTk----~~~aDm~fv~~-al~~~~ 144 (185)
T KOG3420|consen 120 INPPFGTK----KKGADMEFVSA-ALKVAS 144 (185)
T ss_pred ecCCCCcc----cccccHHHHHH-HHHHHH
Confidence 99874321 12245677776 444444
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.77 E-value=3.4e-05 Score=65.76 Aligned_cols=98 Identities=24% Similarity=0.291 Sum_probs=74.5
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
..+.|+|+|+|.++..+++. ..+|.++|.||...+.|++++..+ .+.+++++.+||+.|= -+..|+|++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA~~y~---fe~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDARDYD---FENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC----CCcceEEEeccccccc---ccccceeHHHH
Confidence 57899999999999887765 689999999999999999998766 3679999999999872 25689999876
Q ss_pred CCCCCCCCccCcccH---HHHHHHHcccCCCCcEEEEe
Q 022451 184 ADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~---ef~~~~~~~~L~pgGvl~~~ 218 (297)
-|.. |... ..++. +.+-|+.++.++-+
T Consensus 105 lDTa-------Li~E~qVpV~n~-vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTA-------LIEEKQVPVINA-VLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHH-------hhcccccHHHHH-HHHHhhcCCccccH
Confidence 6421 1111 33444 45577788877633
No 218
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.77 E-value=0.00013 Score=75.11 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=62.4
Q ss_pred CCCeEEEEccchhHHHHHHHhc----C--------------------------------------CCcEEEEEECCHHHH
Q 022451 102 NPKTIFIMGGGEGSTAREILRH----K--------------------------------------TVEKVVMCDIDEEVV 139 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~----~--------------------------------------~~~~v~~VEid~~vi 139 (297)
....++|-+||+|+++.+++.. . ...+|+++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4578999999999999887642 0 123699999999999
Q ss_pred HHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCC
Q 022451 140 EFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLAD 185 (297)
Q Consensus 140 ~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~ 185 (297)
+.|+++....+ -..++++..+|+.+.-.. ..++||+|++|+|-
T Consensus 270 ~~A~~N~~~~g---~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 270 QAARKNARRAG---VAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHcC---CCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 99999987653 135789999998875322 12579999999873
No 219
>PRK04148 hypothetical protein; Provisional
Probab=97.74 E-value=7.9e-05 Score=60.64 Aligned_cols=70 Identities=21% Similarity=0.154 Sum_probs=50.2
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++++||+||||.|. ++..+.+. ..+|+++|+||..++.|++. .++++.+|.++-=..--+.+|+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence 356889999999996 77777764 46999999999999988764 35677777643211112457888
Q ss_pred EEcC
Q 022451 180 IGDL 183 (297)
Q Consensus 180 i~D~ 183 (297)
..--
T Consensus 82 ysir 85 (134)
T PRK04148 82 YSIR 85 (134)
T ss_pred EEeC
Confidence 7653
No 220
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00025 Score=66.39 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=82.6
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+++|||-=+|+|.=+...+...+..+|++-|+||..+++.++++..+. .....++..|+-.++.+....||+|=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence 889999888999876555554445589999999999999999998762 2455666699999998877899999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|. .|. .|++. +.+.++.+|++.+..
T Consensus 129 PFG----SPa------PFlDa-A~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFG----SPA------PFLDA-ALRSVRRGGLLCVTA 154 (380)
T ss_pred CCC----CCc------hHHHH-HHHHhhcCCEEEEEe
Confidence 984 343 67777 778889999998874
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.0013 Score=57.74 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+++++|||.|.|.=+.-++-..|..+||.+|....=+...++-... ++-++++++++-+.++-..... ||+|.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e----L~L~nv~i~~~RaE~~~~~~~~-~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE----LGLENVEIVHGRAEEFGQEKKQ-YDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH----hCCCCeEEehhhHhhccccccc-CcEEEee
Confidence 7999999999996443333223566799999998877766553321 2347899999998887533222 9999998
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC-CceeEEEEecCcc
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KYVVPYSAHIPSF 255 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F-~~v~~~~~~vp~~ 255 (297)
+..+. ..+... +...|++||.+++.-.. ...+.+....+.+.... .-...+....|..
T Consensus 143 Ava~L----------~~l~e~-~~pllk~~g~~~~~k~~----~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 143 AVASL----------NVLLEL-CLPLLKVGGGFLAYKGL----AGKDELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred hccch----------HHHHHH-HHHhcccCCcchhhhHH----hhhhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 87432 134444 68999999987654321 12334445555555443 3333344455654
No 222
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.67 E-value=0.0006 Score=62.16 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=86.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~ 175 (297)
...|-+||+|.||.|.....++...+. .+|...|.+|.-++..++.....+ + .+-+++..+||++. +..-..+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L-~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--L-EDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--C-ccceEEEecCCCCHhHhhccCCC
Confidence 457889999999999998888875544 799999999999999998776442 1 23459999999775 4444567
Q ss_pred ceEEEEcC-CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 176 YDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 176 yD~Ii~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
.+++++.- ++-. +...+.. .-++. +.++|.|||.++. ++-| | + ++++-+.+.|.+
T Consensus 210 P~l~iVsGL~ElF---~Dn~lv~-~sl~g-l~~al~pgG~lIy-TgQP--w-H-PQle~IAr~Lts 265 (311)
T PF12147_consen 210 PTLAIVSGLYELF---PDNDLVR-RSLAG-LARALEPGGYLIY-TGQP--W-H-PQLEMIARVLTS 265 (311)
T ss_pred CCEEEEecchhhC---CcHHHHH-HHHHH-HHHHhCCCcEEEE-cCCC--C-C-cchHHHHHHHhc
Confidence 88877653 3211 1112222 34555 6789999999864 4444 3 2 234455555544
No 223
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.66 E-value=0.00028 Score=65.93 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=57.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..++||||+++|+.+..+++.. .+|++||..+..-.+ ..+++|+.+.+|+..+... .+.+|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L-----------~~~~~V~h~~~d~fr~~p~-~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSL-----------MDTGQVEHLRADGFKFRPP-RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhh-----------hCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence 467899999999999999999873 499999965522111 2469999999999988653 57899999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
+|...
T Consensus 276 cDmve 280 (357)
T PRK11760 276 CDMVE 280 (357)
T ss_pred Eeccc
Confidence 99874
No 224
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.66 E-value=0.00035 Score=64.66 Aligned_cols=102 Identities=21% Similarity=0.349 Sum_probs=74.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
..+-|||+|||+|.+...++.. +.++|.+||-+ +|.+.|++-...+. -.+|+.++.|-..+ +. -+++.|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~---~~~rItVI~GKiEd-ie-LPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNN---LADRITVIPGKIED-IE-LPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCC---ccceEEEccCcccc-cc-CchhccEEEe
Confidence 4678999999999999888875 58899999995 57788888766442 34789999887544 22 3588999999
Q ss_pred cCCCCCCCCCccCcccHH---HHHHHHcccCCCCcEEEEe
Q 022451 182 DLADPIEGGPCYKLYTKS---FYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~e---f~~~~~~~~L~pgGvl~~~ 218 (297)
.+-. ..|+.+. -|-. +++-|+|.|.+.-.
T Consensus 250 EPMG-------~mL~NERMLEsYl~-Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 250 EPMG-------YMLVNERMLESYLH-ARKWLKPNGKMFPT 281 (517)
T ss_pred ccch-------hhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence 8642 1233333 3333 57999999988644
No 225
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.65 E-value=0.0002 Score=62.17 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCeEEEEccchhH----HHHHHHh---c-CC-CcEEEEEECCHHHHHHHHhh------------------h-hhccCCC
Q 022451 102 NPKTIFIMGGGEGS----TAREILR---H-KT-VEKVVMCDIDEEVVEFCKSY------------------L-VVNKEAF 153 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~---~-~~-~~~v~~VEid~~vi~~a~~~------------------f-~~~~~~~ 153 (297)
.+-+|+..||++|- ++..+.. . .+ ..+|++.|||+.+++.|++- | ...+..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56789999999995 3333333 1 11 35999999999999999882 2 1111000
Q ss_pred C-----CCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 154 S-----DPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 154 ~-----~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
. ..+|++...|..+ .....++||+|++--.--. ...-.....++. +.+.|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIY----F~~~~~~~vl~~-l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIY----FDPETQQRVLRR-LHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGG----S-HHHHHHHHHH-HGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEE----eCHHHHHHHHHH-HHHHcCCCCEEEEec
Confidence 0 1467788888766 1223578999998632100 001112457777 789999999999863
No 226
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.0017 Score=55.62 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=85.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-ch---HHHHh----c
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DA---RAELE----S 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da---~~~l~----~ 171 (297)
.+..+|||+|+..|++++.+.+.. |..-|.+|||- ++.-. +.+.++.+ |. ..+.+ .
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~------~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPP------EGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCC------CCcccccccccCCHHHHHHHHHhC
Confidence 457899999999999999988764 78899999983 22111 23344443 32 22211 1
Q ss_pred cCCCceEEEEcCCCCCCCCC--ccCcccHH----HHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 172 RKESYDVIIGDLADPIEGGP--CYKLYTKS----FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p--~~~L~t~e----f~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
.+.+.|+|++|... ..++. ..+...-+ .+.- .-..+.|+|.++... |. ......+.+.|.++|..|
T Consensus 133 p~r~VdvVlSDMap-naTGvr~~Dh~~~i~LC~s~l~~-al~~~~p~g~fvcK~-----w~-g~e~~~l~r~l~~~f~~V 204 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAP-NATGVRIRDHYRSIELCDSALLF-ALTLLIPNGSFVCKL-----WD-GSEEALLQRRLQAVFTNV 204 (232)
T ss_pred CCCcccEEEeccCC-CCcCcchhhHHHHHHHHHHHHHH-hhhhcCCCcEEEEEE-----ec-CCchHHHHHHHHHHhhhc
Confidence 35789999999873 21121 01111111 1111 236788999998774 32 233467778899999988
Q ss_pred eEEEEecCccC-CceeEEEEecCC
Q 022451 246 VPYSAHIPSFA-DTWGWIMVSIYN 268 (297)
Q Consensus 246 ~~~~~~vp~~~-~~~~~~~as~~~ 268 (297)
+.+. .-.+.. ..-.|++|.+..
T Consensus 205 k~vK-P~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 205 KKVK-PDASRDESAETYLVCLNFK 227 (232)
T ss_pred EeeC-Cccccccccceeeeeeecc
Confidence 7553 111222 223566776554
No 227
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.53 E-value=0.00042 Score=60.31 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=82.6
Q ss_pred CCCC-eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHh---ccCCC
Q 022451 101 PNPK-TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELE---SRKES 175 (297)
Q Consensus 101 ~~~~-~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-~~~l~---~~~~~ 175 (297)
++.. +||+||+|+|.-+.+++++.|..+-.--|.|+....-.+.+....+...-.+-+.+=..+. ..+.. ...+.
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 5999999999999999998888888889999999766666544221100012222222211 12210 12468
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc---CCchHHHHHHHHHHhhCC
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF---SHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~---~~~~~~~~i~~~l~~~F~ 243 (297)
||+|++--.-+. +| .-.+..+|+. +.+.|++||.|+++. |... ...+..++.-..|++.-|
T Consensus 103 ~D~i~~~N~lHI--~p--~~~~~~lf~~-a~~~L~~gG~L~~YG--PF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 103 FDAIFCINMLHI--SP--WSAVEGLFAG-AARLLKPGGLLFLYG--PFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred cceeeehhHHHh--cC--HHHHHHHHHH-HHHhCCCCCEEEEeC--CcccCCEeCCcHHHHHHHHHhcCCC
Confidence 999998755443 22 1124578888 899999999999884 2111 123344455555555433
No 228
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0039 Score=54.01 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=93.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~yD 177 (297)
...+.+||-||..+|++..++....+...|.+||.+|++.+-. +.... +.+|+--+.+||+.--+ .-=+..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL---l~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL---LDVAE---KRPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH---HHHHH---hCCCceeeecccCCcHHhhhhccccc
Confidence 3568999999999999999999876778899999999886432 22111 23677778899854211 1125699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCc--EEEEecCCCCCc-CCchHHHHHHHHHHhhC-CceeEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIF-SHTEVFSCIYNTLRQVF-KYVVPYSAHIP 253 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG--vl~~~~~~p~~~-~~~~~~~~i~~~l~~~F-~~v~~~~~~vp 253 (297)
+|+.|...|.. .+-+... +..-|+++| ++++...+-.+. ...+.+++..+.|++.+ .-.. ...+.
T Consensus 148 viy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e--~~~Le 216 (231)
T COG1889 148 VIYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE--VVDLE 216 (231)
T ss_pred EEEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE--EeccC
Confidence 99999986541 1234455 688999999 555554332212 23445666666777654 4322 13444
Q ss_pred ccCCceeEEEE
Q 022451 254 SFADTWGWIMV 264 (297)
Q Consensus 254 ~~~~~~~~~~a 264 (297)
+|......+++
T Consensus 217 Pye~DH~~i~~ 227 (231)
T COG1889 217 PYEKDHALIVA 227 (231)
T ss_pred CcccceEEEEE
Confidence 45433444433
No 229
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.48 E-value=0.00047 Score=61.28 Aligned_cols=98 Identities=23% Similarity=0.293 Sum_probs=56.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii 180 (297)
.+++||.||=.+-.....++.. ..++|+++|||+++++.-++.....+ -.++.+..|.|.-|... .++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~g-----l~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTG-LPKRITVVDIDERLLDFINRVAEEEG-----LPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcC-----CceEEEEecccccCCHHHhcCCCEEE
Confidence 5899999997776655544544 35799999999999999887765432 23999999999888653 57899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCc
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG 213 (297)
.|++-.. ..+ .-|+.. .-+.|+..|
T Consensus 118 TDPPyT~-----~G~--~LFlsR-gi~~Lk~~g 142 (243)
T PF01861_consen 118 TDPPYTP-----EGL--KLFLSR-GIEALKGEG 142 (243)
T ss_dssp E---SSH-----HHH--HHHHHH-HHHTB-STT
T ss_pred eCCCCCH-----HHH--HHHHHH-HHHHhCCCC
Confidence 9986321 111 136666 467888777
No 230
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00024 Score=62.90 Aligned_cols=107 Identities=25% Similarity=0.387 Sum_probs=71.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhc--cCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELES--RKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~~--~~~~y 176 (297)
.+.+||++|||.|.+..-+++..+. -.|.++|.+|..+++.+++-... ..++.-.+-|... -+.. ..+.+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCcc
Confidence 3458999999999999988886555 78999999999999999875433 1344444444321 1222 24678
Q ss_pred eEEEEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|++--. +.. .| ... ...+.. +.+.|||||.|+.-.
T Consensus 146 D~it~IFvLSAi--~p-ek~--~~a~~n-l~~llKPGG~llfrD 183 (264)
T KOG2361|consen 146 DIITLIFVLSAI--HP-EKM--QSVIKN-LRTLLKPGGSLLFRD 183 (264)
T ss_pred ceEEEEEEEecc--Ch-HHH--HHHHHH-HHHHhCCCcEEEEee
Confidence 87654321 111 12 121 245677 789999999998874
No 231
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.36 E-value=0.00052 Score=63.90 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=72.3
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
-...+|+|+|.|.+++.++.++| +|.+++.|..-+-.++.++. |.|+.+.+|.++- -.+-|+|++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~----~P~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD----TPKGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc----CCCcCeEEEE
Confidence 47899999999999999999764 59999999888887777653 3388888997554 2446688775
Q ss_pred CC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.- .+|.+ ..+ .+|+++ |++.|+|+|.+++-.
T Consensus 244 WiLhdwtD---edc--vkiLkn-C~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 244 WILHDWTD---EDC--VKILKN-CKKSLPPGGKIIVVE 275 (342)
T ss_pred eecccCCh---HHH--HHHHHH-HHHhCCCCCEEEEEe
Confidence 44 23321 122 379999 699999999887764
No 232
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.33 E-value=0.00052 Score=63.08 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=66.3
Q ss_pred CCCeEEEEccchhH----HHHHHHhcC----CCcEEEEEECCHHHHHHHHhhh-hhc---c-------CCC------C--
Q 022451 102 NPKTIFIMGGGEGS----TAREILRHK----TVEKVVMCDIDEEVVEFCKSYL-VVN---K-------EAF------S-- 154 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~----~~~~v~~VEid~~vi~~a~~~f-~~~---~-------~~~------~-- 154 (297)
.+-+|+..||++|- ++..+.+.. ...+|++.|||+.+++.|++-. +.. . ..+ .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35699999999995 333333321 1357999999999999999831 000 0 000 0
Q ss_pred --------CCCeEEEEcchHHHHhccCCCceEEEEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 155 --------DPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 155 --------~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..+|++...|..+.-....++||+|++--. -.. .+ -.....++. +.+.|+|||+|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~---~~~~~vl~~-l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DK---TTQERILRR-FVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence 134555556543310011367999998422 111 00 113467777 79999999999875
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.27 E-value=0.00091 Score=54.30 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=45.8
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D 164 (297)
++|||||.|..+..+++..+..+|+++|.+|.+.+.+++++..+. -++++++...
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~a 56 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAA 56 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEee
Confidence 799999999999999887666799999999999999999887542 1457777655
No 234
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.25 E-value=0.0031 Score=55.19 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=79.3
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
|.||||-=|.++.+|++.....+++++|+++.-++.|+++....+ ...+++++.+|+.+-+.. .+..|.|++.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL~~l~~-~e~~d~ivIAG-- 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGLEVLKP-GEDVDTIVIAG-- 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--G-GG---EEEEEE--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcccccCC-CCCCCEEEEec--
Confidence 689999999999999998777899999999999999999987543 246999999999988754 23478888863
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.... ...++++. ....++..-.|+++-. . ....+++.+.+.
T Consensus 75 -----MGG~-lI~~ILe~-~~~~~~~~~~lILqP~-----~---~~~~LR~~L~~~ 115 (205)
T PF04816_consen 75 -----MGGE-LIIEILEA-GPEKLSSAKRLILQPN-----T---HAYELRRWLYEN 115 (205)
T ss_dssp -----E-HH-HHHHHHHH-TGGGGTT--EEEEEES-----S----HHHHHHHHHHT
T ss_pred -----CCHH-HHHHHHHh-hHHHhccCCeEEEeCC-----C---ChHHHHHHHHHC
Confidence 2222 34577787 6777777778888721 1 234566666665
No 235
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.10 E-value=0.0017 Score=58.97 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh---cc----------------------------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NK---------------------------- 150 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~---~~---------------------------- 150 (297)
.+.+||+=|||.|.++.++++. .-.+.+.|.|--|+-..+--+.. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999987 35899999999886543321110 00
Q ss_pred -----CCCCCCCeEEEEcchHHHHhcc--CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 151 -----EAFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 151 -----~~~~~~rv~~~~~Da~~~l~~~--~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
......++.+..||..++-... ..+||+|+..-|-.. +..++ ++++. +.++|||||+. +|.+|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT----A~Ni~--~Yi~t-I~~lLkpgG~W-IN~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT----AENII--EYIET-IEHLLKPGGYW-INFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec----hHHHH--HHHHH-HHHHhccCCEE-EecCC
Confidence 0012346788889977765443 478999987755211 12333 78898 79999999955 68753
No 236
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.10 E-value=0.0052 Score=53.75 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=59.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCCCCCCeEEEEcchHHH--HhccC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARAE--LESRK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~~~~rv~~~~~Da~~~--l~~~~ 173 (297)
.+....+|||+|.|....+++...+..+..+||+.+...+.|++..... .......+++++.+|..+. ....-
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 4567899999999999877776556778999999999999887643210 0112346788999986432 22111
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
..-|+|+++..-- .+ .|. ..+.. ....|++|-.++.
T Consensus 121 s~AdvVf~Nn~~F---~~--~l~--~~L~~-~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCF---DP--DLN--LALAE-LLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT----H--HHH--HHHHH-HHTTS-TT-EEEE
T ss_pred cCCCEEEEecccc---CH--HHH--HHHHH-HHhcCCCCCEEEE
Confidence 4579999985421 11 121 22333 3467888777654
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0035 Score=59.37 Aligned_cols=112 Identities=21% Similarity=0.140 Sum_probs=80.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCC--------------------------------Cc-------EEEEEECCHHHHHHH
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKT--------------------------------VE-------KVVMCDIDEEVVEFC 142 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~--------------------------------~~-------~v~~VEid~~vi~~a 142 (297)
+...++|==||+|+++.+++.... .. .+.++|+|+.+++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 346899999999999988876432 01 377999999999999
Q ss_pred HhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCC-C--ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG-P--CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 143 ~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~-p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+....+ -.+.+++..+|+..+-. .-+.+|+||+++|=..+-+ . ...||. +|.+. +++.++--+.+++.+
T Consensus 271 k~NA~~AG---v~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPYGeRlg~~~~v~~LY~-~fg~~-lk~~~~~ws~~v~tt 344 (381)
T COG0116 271 KANARAAG---VGDLIEFKQADATDLKE-PLEEYGVVISNPPYGERLGSEALVAKLYR-EFGRT-LKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHhcC---CCceEEEEEcchhhCCC-CCCcCCEEEeCCCcchhcCChhhHHHHHH-HHHHH-HHHHhcCCceEEEEc
Confidence 99865433 24679999999876532 2278999999998322111 1 123553 67777 788888877887754
No 238
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.04 E-value=0.0052 Score=56.89 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----cCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~----~~~~y 176 (297)
.++..++|.=+|.|+-+..+++..+..+|+++|.||.+++.|++.+... ..|+++++++..++... ...++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~v 93 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKI 93 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCcc
Confidence 4557899999999999999998654589999999999999999976422 36899999998766432 12579
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|.|+.|+-
T Consensus 94 DgIl~DLG 101 (305)
T TIGR00006 94 DGILVDLG 101 (305)
T ss_pred cEEEEecc
Confidence 99999984
No 239
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.02 E-value=0.0034 Score=57.09 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=65.4
Q ss_pred CCCeEEEEccchhH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhh-h-hcc-C------------CCCC--
Q 022451 102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYL-V-VNK-E------------AFSD-- 155 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~f-~-~~~-~------------~~~~-- 155 (297)
.+-+|.-.||++|- ++..+.+..+ ..+|++.|||..+++.|++-. + ... . ...+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999994 5555555442 479999999999999998731 1 000 0 0001
Q ss_pred --------CCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 156 --------PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 156 --------~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..|++...|...--. ..+.||+|++-----.. ..-...+.++. ....|+|||+|.+-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF----d~~~q~~il~~-f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF----DEETQERILRR-FADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee----CHHHHHHHHHH-HHHHhCCCCEEEEc
Confidence 123333333211000 23569999985320000 01113456777 78999999999875
No 240
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.00 E-value=0.01 Score=56.65 Aligned_cols=140 Identities=14% Similarity=0.015 Sum_probs=95.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
.+++.+|||+++..|+=+.+++.. .....|.+-|.+..-+...+.++...+ -.+..+...|+++|-.. ...+||
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCcccc
Confidence 356789999999888766555543 345689999999999999998876543 35677888999877433 234899
Q ss_pred EEEEcCCCCC---CCCCcc-------------CcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 178 VIIGDLADPI---EGGPCY-------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 178 ~Ii~D~~~~~---~~~p~~-------------~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
-|++|++-.. ...+.. .-+.++.+.. +-+.+++||+|+-.+++- ..+.-+.+++.+-+-
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~Llls-Ai~lv~~GGvLVYSTCSI----~~~ENE~vV~yaL~K 389 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLS-AIDLVKAGGVLVYSTCSI----TVEENEAVVDYALKK 389 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHH-HHhhccCCcEEEEEeeec----chhhhHHHHHHHHHh
Confidence 9999998211 000100 1123455555 568999999998887642 344556777777778
Q ss_pred CCceeEE
Q 022451 242 FKYVVPY 248 (297)
Q Consensus 242 F~~v~~~ 248 (297)
||++...
T Consensus 390 ~p~~kL~ 396 (460)
T KOG1122|consen 390 RPEVKLV 396 (460)
T ss_pred CCceEec
Confidence 8887543
No 241
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.94 E-value=0.0018 Score=56.75 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=55.4
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~ 178 (297)
.+..|+|.-||.|+-+.+.+..+ ..|.++|+||.-+..||.+....+- ..|+++++||..+.... .+..+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI---~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGV---PDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecC---CceeEEEechHHHHHHHHhhhhheeee
Confidence 56677886666555554444433 4799999999999999999875542 24999999998765433 3455778
Q ss_pred EEEcCC
Q 022451 179 IIGDLA 184 (297)
Q Consensus 179 Ii~D~~ 184 (297)
++..++
T Consensus 169 vf~spp 174 (263)
T KOG2730|consen 169 VFLSPP 174 (263)
T ss_pred eecCCC
Confidence 877653
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.86 E-value=0.0059 Score=55.79 Aligned_cols=123 Identities=14% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
-.|++|||+|+|.|+.+..+...+ ...++++||.++.++++++.-+..... ...... .. .+... .-.+.|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~---~~~~~~-~~---~~~~~~~~~~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN---NRNAEW-RR---VLYRDFLPFPPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc---cccchh-hh---hhhcccccCCCCc
Confidence 368999999999998776666543 367899999999999999986542210 111111 11 11111 123459
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE-ecCCCCCcCCchHHHHHHHHHHh
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT-QAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~-~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
+|++.-.-.. .+ . --..++.+. +.+.+++ +|++ .-+.| ..-+.+..+.+.|.+
T Consensus 105 Lvi~s~~L~E--L~-~-~~r~~lv~~-LW~~~~~--~LVlVEpGt~---~Gf~~i~~aR~~l~~ 158 (274)
T PF09243_consen 105 LVIASYVLNE--LP-S-AARAELVRS-LWNKTAP--VLVLVEPGTP---AGFRRIAEARDQLLE 158 (274)
T ss_pred EEEEehhhhc--CC-c-hHHHHHHHH-HHHhccC--cEEEEcCCCh---HHHHHHHHHHHHHhh
Confidence 9987643111 11 1 112356666 5666665 5544 32332 334455555555544
No 243
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.0038 Score=60.96 Aligned_cols=106 Identities=18% Similarity=0.318 Sum_probs=76.4
Q ss_pred CCeEEEEccchhHHHHHHHh----cCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 103 PKTIFIMGGGEGSTAREILR----HKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~----~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...|+++|+|-|-+....++ ...--++.+||-+|.++-..+.. |.. =+.+|+++..|-|.|-. ..++.|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~-----W~~~Vtii~~DMR~w~a-p~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC-----WDNRVTIISSDMRKWNA-PREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh-----hcCeeEEEeccccccCC-chhhcc
Confidence 34577789999988765553 22345789999999998876552 221 14799999999999862 247899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++.+-... + ..=++.|=+.- +.+.|+|+|+.+-..
T Consensus 442 I~VSELLGSF--G--DNELSPECLDG-~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 442 IIVSELLGSF--G--DNELSPECLDG-AQKFLKPDGISIPSS 478 (649)
T ss_pred chHHHhhccc--c--CccCCHHHHHH-HHhhcCCCceEccch
Confidence 9999876433 1 12236677777 789999999887553
No 244
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.80 E-value=0.015 Score=45.11 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=65.2
Q ss_pred EEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccC-CCceEEEEc
Q 022451 106 IFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRK-ESYDVIIGD 182 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~-~~yD~Ii~D 182 (297)
++++|||+|... .+....+. ..++++|+++.++..++..... . ....+.+..+|.... +.... ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999976 33333222 3788899999999985554321 1 011167888887652 33333 479999333
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..... . . ....+.. +.+.|+|+|.+++...
T Consensus 127 ~~~~~--~---~--~~~~~~~-~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHL--L---P--PAKALRE-LLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhc--C---C--HHHHHHH-HHHhcCCCcEEEEEec
Confidence 32211 0 1 3467777 7899999999887754
No 245
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.79 E-value=0.0021 Score=57.16 Aligned_cols=82 Identities=21% Similarity=0.152 Sum_probs=48.9
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-----CCCeEEEEcchHHHHhccCCCceE
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-----DPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-----~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+|||.=+|-|.-+..++.. ..+|+++|-+|.+..+.+.-+.......+ -.|++++.+|+.+||+.....||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999777777766666554 36899999999999887764431110001 138999999999999866789999
Q ss_pred EEEcCCCCC
Q 022451 179 IIGDLADPI 187 (297)
Q Consensus 179 Ii~D~~~~~ 187 (297)
|.+|+-.|.
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 999987543
No 246
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.77 E-value=0.038 Score=50.43 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=89.3
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL 183 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~ 183 (297)
+|+++.||.|++...+.+. +...+.++|+|+..++..+.+++. . ++.+|..+..... ...+|+|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~---------~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN---------K-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC---------C-CccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999998777764 467789999999999999987642 1 5567766654332 45799999998
Q ss_pred CC-CCC--------CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcC--CchHHHHHHHHHHhhCCceeEEEEec
Q 022451 184 AD-PIE--------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAHI 252 (297)
Q Consensus 184 ~~-~~~--------~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~--~~~~~~~i~~~l~~~F~~v~~~~~~v 252 (297)
+= +.+ ..+...| -.++++. + +.++|.=+++=|+ ++... ..+.+..+.+.|.+..=.+.......
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L-~~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a 145 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTL-FFEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEELGYNVYWKLLNA 145 (275)
T ss_pred CChhhhHHhhcCCCCCchHHH-HHHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhCCcEEEEEEEEH
Confidence 72 111 0111122 2356665 3 5668886555443 22111 24567777777776532233222222
Q ss_pred CccC----CceeEEEEecCC
Q 022451 253 PSFA----DTWGWIMVSIYN 268 (297)
Q Consensus 253 p~~~----~~~~~~~as~~~ 268 (297)
..|+ ....|++|.+.+
T Consensus 146 ~~~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 146 SDYGVPQNRERVFIIGIRKD 165 (275)
T ss_pred HHcCCCCCCcEEEEEEEeCC
Confidence 2332 124567777655
No 247
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0051 Score=60.02 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=74.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC----CC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK----ES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~----~~ 175 (297)
.+..+-+||+.||+|.++..+++. ..+|.+||++|+.++-|+++-..++ -.+.+++.+-+.+.+..-. ..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCC
Confidence 356688999999999999999874 6899999999999999999866553 4678999996655443311 23
Q ss_pred ce-EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YD-VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD-~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
=+ ++++|++... ....+++. +.+.-++.=.+.+.+
T Consensus 455 ~~~v~iiDPpR~G--------lh~~~ik~-l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 455 ETLVAIIDPPRKG--------LHMKVIKA-LRAYKNPRRLVYVSC 490 (534)
T ss_pred CceEEEECCCccc--------ccHHHHHH-HHhccCccceEEEEc
Confidence 34 7788876421 23356666 555554655555554
No 248
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0017 Score=62.91 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=82.6
Q ss_pred CCCCeEEEEccchhHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC---CCc
Q 022451 101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK---ESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~---~~y 176 (297)
..+-+||+.=+++|.-+ +++....+..+|++-|.|++.++..+++..++. .+..++...+||...+-... ..|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence 45668888767777765 444445678899999999999999999988764 34678999999988775544 789
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|=+|++. .+. .|++. +-+.+..||+|++..
T Consensus 185 DvIDLDPyG----s~s------~FLDs-Avqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYG----SPS------PFLDS-AVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCC----Ccc------HHHHH-HHHHhhcCCEEEEEe
Confidence 999999884 222 67787 789999999998875
No 249
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.73 E-value=0.0028 Score=58.42 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=47.2
Q ss_pred CCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch----HHHHhccCCCce
Q 022451 103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA----RAELESRKESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da----~~~l~~~~~~yD 177 (297)
.-++||||+|..++ +.-..+.+ .-++++.|||+..++.|+++...+.. -..+++++...- ...+....++||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceee
Confidence 46899999998765 33333443 46999999999999999999876621 247898876532 222333457899
Q ss_pred EEEEcCCC
Q 022451 178 VIIGDLAD 185 (297)
Q Consensus 178 ~Ii~D~~~ 185 (297)
+.+++++.
T Consensus 180 ftmCNPPF 187 (299)
T PF05971_consen 180 FTMCNPPF 187 (299)
T ss_dssp EEEE----
T ss_pred EEecCCcc
Confidence 99999873
No 250
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.69 E-value=0.018 Score=50.63 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
++..++.||||--+.++.++.+..+...++++|+++.-++.|.+++..+. ..++++++.+|+..-+.. ++.+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~-~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL-EDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc-cCCcCEEE
Confidence 45556999999999999999998788999999999999999999998654 358999999999776653 46799998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.- ....+ -.+++++ -++.|+.-=.++++
T Consensus 91 IAG-------MGG~l-I~~ILee-~~~~l~~~~rlILQ 119 (226)
T COG2384 91 IAG-------MGGTL-IREILEE-GKEKLKGVERLILQ 119 (226)
T ss_pred EeC-------CcHHH-HHHHHHH-hhhhhcCcceEEEC
Confidence 863 22233 3478888 78888854567776
No 251
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.66 E-value=0.00093 Score=60.89 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=102.9
Q ss_pred cccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCC
Q 022451 46 LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKT 125 (297)
Q Consensus 46 ~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~ 125 (297)
...++..+.++++++.|.. +..+.++.+++.....+.+ ..|.+.|+. .-..++|.++|| +|....+.++..
T Consensus 124 kvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~-----gy~~~~v~l~iG-DG~~fl~~~~~~- 194 (337)
T KOG1562|consen 124 KVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC-----GYEGKKVKLLIG-DGFLFLEDLKEN- 194 (337)
T ss_pred eEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc-----ccCCCceEEEec-cHHHHHHHhccC-
Confidence 3458888888999988877 5567888888776655544 345554432 246778988886 888888888653
Q ss_pred CcEEEEEECCHHHHHHHHhh----hhhccCCCCCCCeEEEEcchHHHHhc---cCCCceEEEEcCCC-CCCCCCccCccc
Q 022451 126 VEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDLAD-PIEGGPCYKLYT 197 (297)
Q Consensus 126 ~~~v~~VEid~~vi~~a~~~----f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~Ii~D~~~-~~~~~p~~~L~t 197 (297)
...|+.+|+|..+...+..| |+....+++...+.+.++|..-+..+ ...+||-++.+..+ ++.+.|....-
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg- 273 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAITTVPTYPSG- 273 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceeeecCCCCccc-
Confidence 46899999999888877654 55444567778899999987543322 22455555555442 33223311100
Q ss_pred HHHHHHHHcccCCCCcEEEEec
Q 022451 198 KSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 198 ~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-.|.. +.. |+|+|-+....
T Consensus 274 ~igf~l-~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 274 RIGFML-CSK-LKPDGKYKTPG 293 (337)
T ss_pred eEEEEE-ecc-cCCCCCccCCC
Confidence 001112 223 99999887654
No 252
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.64 E-value=0.013 Score=53.07 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCCeEEEEccchh--HHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC--eEEEEcchHHH---Hhc--
Q 022451 102 NPKTIFIMGGGEG--STAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR--LELVINDARAE---LES-- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G--~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r--v~~~~~Da~~~---l~~-- 171 (297)
--.+.||||||-= ..++++++ ..|..+|..||.||.++..++.-+..+ ++ ..++.+|.++- |..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------PRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC------CCccEEEEeCCCCCHHHHhcCHH
Confidence 4589999999933 34666654 357899999999999999999876533 44 89999998653 321
Q ss_pred c------CCCceEEEEcCCCCC--CCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 172 R------KESYDVIIGDLADPI--EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 172 ~------~~~yD~Ii~D~~~~~--~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
. +++.=++++...... ...| .+.++. +...|.||..|++..... -..++..+.+...+.+...
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~dp------~~iv~~-l~d~lapGS~L~ish~t~--d~~p~~~~~~~~~~~~~~~ 212 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDDP------AGIVAR-LRDALAPGSYLAISHATD--DGAPERAEALEAVYAQAGS 212 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCTH------HHHHHH-HHCCS-TT-EEEEEEEB---TTSHHHHHHHHHHHHHCCS
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccCH------HHHHHH-HHHhCCCCceEEEEecCC--CCCHHHHHHHHHHHHcCCC
Confidence 1 233335555443211 1122 367888 799999999999885432 1233334445555554433
No 253
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.61 E-value=0.0094 Score=51.72 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=82.3
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc----cCCCCCCCeEEEEcchHHHHhcc--CCCc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDPRLELVINDARAELESR--KESY 176 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~----~~~~~~~rv~~~~~Da~~~l~~~--~~~y 176 (297)
.-.+.|||||-|+++..+...+|..-|.+.||--.|.+..++..... +.. .-+++.+....+..|+..- ..+.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~-~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEG-QYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccc-ccccceeeeccchhhccchhhhccc
Confidence 35689999999999999999999999999999999999998876421 111 1467888889998888652 2334
Q ss_pred eEEEEcCCCCCC--CCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~--~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+=++.-.++|.. ......+.+...+.. ..=.|++||++..-+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEEe
Confidence 444444444431 111235566667777 577999999987764
No 254
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.61 E-value=0.0042 Score=54.21 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCCCeEEEEccchhHHHHHHH---hc-CCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHH--HHhc--
Q 022451 101 PNPKTIFIMGGGEGSTAREIL---RH-KTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARA--ELES-- 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~---~~-~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~-- 171 (297)
-+|+.|+++|.-.|+.+...+ +. .+.++|.+||||..-.. .|.+..++ .+|++++.||..+ .+..
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCceEEEECCCCCHHHHHHHH
Confidence 478999999998887765443 32 26689999999754432 22322122 3899999999742 2222
Q ss_pred -c--CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 172 -R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 172 -~--~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
. .....+|+.|+.+.. .+.. .-++. ....+++|+.+++..
T Consensus 105 ~~~~~~~~vlVilDs~H~~-----~hvl--~eL~~-y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTH-----EHVL--AELEA-YAPLVSPGSYLIVED 147 (206)
T ss_dssp SS----SSEEEEESS---------SSHH--HHHHH-HHHT--TT-EEEETS
T ss_pred HhhccCCceEEEECCCccH-----HHHH--HHHHH-hCccCCCCCEEEEEe
Confidence 1 245669999986432 1221 33444 578999999999873
No 255
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.54 E-value=0.038 Score=51.65 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=71.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHH---Hhc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAE---LES 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~--~~~Da~~~---l~~ 171 (297)
+++..++++|||+|.=++.+++. ....+.+.|||+...++.+.+.+... .-|.+++ +++|-.+- +..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 45568999999999866655542 22467999999999999998887621 1266766 77775443 432
Q ss_pred c--CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcc-cCCCCcEEEEec
Q 022451 172 R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (297)
Q Consensus 172 ~--~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGvl~~~~ 219 (297)
. .....+|+.--.. . +....--...|++. +++ .|+|||.|++-.
T Consensus 151 ~~~~~~~r~~~flGSs-i--GNf~~~ea~~fL~~-~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSS-I--GNFSRPEAAAFLAG-FLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCcc-c--cCCCHHHHHHHHHH-HHHhhCCCCCEEEEec
Confidence 1 2335555543221 1 11111223478888 788 999999998865
No 256
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.019 Score=50.79 Aligned_cols=147 Identities=22% Similarity=0.234 Sum_probs=92.1
Q ss_pred CCCeEEEEccchhHHHHHHHhc-C-----CCc---EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-----
Q 022451 102 NPKTIFIMGGGEGSTAREILRH-K-----TVE---KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA----- 167 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-~-----~~~---~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~----- 167 (297)
.-++|.||++..|++.+.+.+. + ... .|++||+-|.+ + -+.|.-+.+|...
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 4578999999999988777652 1 112 39999996543 1 2567777777522
Q ss_pred -HHhc-cCCCceEEEEcCCCCCCCCCccCc---cc----HHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHH
Q 022451 168 -ELES-RKESYDVIIGDLADPIEGGPCYKL---YT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (297)
Q Consensus 168 -~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L---~t----~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l 238 (297)
.++. ..++.|+|++|-.... ++.. .+ .. ...+.. ....|+|||.|+... ...+...-++..|
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDv-TGlH-d~DEy~Q~qLllaAl~i-~t~Vlk~Gg~FVaKi------fRg~~tslLysql 176 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDV-TGLH-DLDEYVQAQLLLAALNI-ATCVLKPGGSFVAKI------FRGRDTSLLYSQL 176 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCc-cccc-cHHHHHHHHHHHHHHHH-HhheecCCCeeehhh------hccCchHHHHHHH
Confidence 2322 2468999999976222 2221 11 01 122232 458999999998763 3344456778889
Q ss_pred HhhCCceeEEEEecCc--cC-CceeEEEEecCCCCCCccc
Q 022451 239 RQVFKYVVPYSAHIPS--FA-DTWGWIMVSIYNPHSHSIL 275 (297)
Q Consensus 239 ~~~F~~v~~~~~~vp~--~~-~~~~~~~as~~~~~~~~i~ 275 (297)
+..|..|..+. |. .+ ..-.|++|....++...++
T Consensus 177 ~~ff~kv~~~K---PrsSR~sSiEaFvvC~~~~pp~g~~P 213 (294)
T KOG1099|consen 177 RKFFKKVTCAK---PRSSRNSSIEAFVVCLGYCPPEGFIP 213 (294)
T ss_pred HHHhhceeeec---CCccccccceeeeeecccCCccCCCC
Confidence 99999987654 32 22 3357899988766655554
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.44 E-value=0.012 Score=52.73 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=54.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+.|.+|+|||||.--++.-.....+...+.+.|||..+++....++...+ ++.++.+.|...- ......|+.
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-----~~~~~~v~Dl~~~--~~~~~~Dla 175 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-----VPHDARVRDLLSD--PPKEPADLA 175 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT------CEEEEEE-TTTS--HTTSEESEE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-----CCcceeEeeeecc--CCCCCcchh
Confidence 356899999999998888776666667799999999999999999987653 6788888885332 235678988
Q ss_pred EEc
Q 022451 180 IGD 182 (297)
Q Consensus 180 i~D 182 (297)
++-
T Consensus 176 Lll 178 (251)
T PF07091_consen 176 LLL 178 (251)
T ss_dssp EEE
T ss_pred hHH
Confidence 875
No 258
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.43 E-value=0.017 Score=51.33 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=90.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHH----HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--c
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEV----VEFCKSYLVVNKEAFSDPRLELVINDARAELES--R 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~v----i~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~ 172 (297)
.++..+||-||++.|+....+... .|..-|.+||.++.. +..|++ .+|+--++.||+.--+- .
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeee
Confidence 367789999999999998887764 466789999998753 444443 36787888998753221 1
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc---CCchHHHHHHHHHHhh-CCceeEE
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF---SHTEVFSCIYNTLRQV-FKYVVPY 248 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~---~~~~~~~~i~~~l~~~-F~~v~~~ 248 (297)
-.-.|+||.|.+.|..+ .. -.+ . ++--|++||-+++...+++.. .....++.-.+.|++. +.-..
T Consensus 224 VgmVDvIFaDvaqpdq~----Ri---vaL-N-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~E-- 292 (317)
T KOG1596|consen 224 VGMVDVIFADVAQPDQA----RI---VAL-N-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKE-- 292 (317)
T ss_pred eeeEEEEeccCCCchhh----hh---hhh-h-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchh--
Confidence 23589999998865411 11 111 2 467899999998876544221 1233555555666653 33221
Q ss_pred EEecCccCCceeEEEEe
Q 022451 249 SAHIPSFADTWGWIMVS 265 (297)
Q Consensus 249 ~~~vp~~~~~~~~~~as 265 (297)
...+.+|.....+++..
T Consensus 293 qvtLEP~erdha~VvG~ 309 (317)
T KOG1596|consen 293 QVTLEPFERDHACVVGV 309 (317)
T ss_pred eeccccccCCceEEEEE
Confidence 12344454335565554
No 259
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.42 E-value=0.0095 Score=55.22 Aligned_cols=79 Identities=22% Similarity=0.171 Sum_probs=56.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhcc--CCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR--KES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~~--~~~ 175 (297)
.++...+|.=.|.|+.+..+++..+..+++++|.||.+++.|++.+... ++|+.++.++..++ +... -.+
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCc
Confidence 4566789988899999999998766699999999999999999877532 47999999886543 3333 258
Q ss_pred ceEEEEcCC
Q 022451 176 YDVIIGDLA 184 (297)
Q Consensus 176 yD~Ii~D~~ 184 (297)
+|.|+.|+-
T Consensus 94 ~dgiL~DLG 102 (310)
T PF01795_consen 94 VDGILFDLG 102 (310)
T ss_dssp EEEEEEE-S
T ss_pred cCEEEEccc
Confidence 999999984
No 260
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.37 E-value=0.029 Score=52.97 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=67.2
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcc-CCCceE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESR-KESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l-~~~-~~~yD~ 178 (297)
.+.+|+++|+|. |.++..+++..+..+|+++|+++.-+++|+++++.... .++.-+ |....+ ... ...+|+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~--~~~~~~----~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV--VNPSED----DAGAEILELTGGRGADV 241 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe--ecCccc----cHHHHHHHHhCCCCCCE
Confidence 344899999995 55667777877889999999999999999997653210 111111 333333 222 236999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|--.- +...++. +.+.++++|.+++..
T Consensus 242 vie~~G------------~~~~~~~-ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEAVG------------SPPALDQ-ALEALRPGGTVVVVG 269 (350)
T ss_pred EEECCC------------CHHHHHH-HHHHhcCCCEEEEEe
Confidence 985532 1245666 678999999998764
No 261
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.36 E-value=0.014 Score=56.97 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=66.6
Q ss_pred EEcCccccccCChhhHHHHHHHH-HH-hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEE--EEECCHHHHHHHHhh-hh
Q 022451 73 VIDGKLQSAEVDEFIYHESLVHP-AL-LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVV--MCDIDEEVVEFCKSY-LV 147 (297)
Q Consensus 73 ~ldg~~q~~~~d~~~y~e~l~~~-~l-~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~--~VEid~~vi~~a~~~-f~ 147 (297)
|-.|..|... ....|.+.+... ++ .....-+.+||+|||.|+++..++.+. +..+. .-|..+..++.|-+. ++
T Consensus 87 FPgggt~F~~-Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvp 164 (506)
T PF03141_consen 87 FPGGGTMFPH-GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVP 164 (506)
T ss_pred eCCCCccccC-CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcc
Confidence 3344444442 223466555432 22 123445789999999999999999852 32222 113333344444332 11
Q ss_pred hccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 148 ~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
.. +- +. +.+-|.-....||+|=+.-. .+|. +...+ ++-+ +.|.|+|||.++.. ++|
T Consensus 165 a~--------~~-~~--~s~rLPfp~~~fDmvHcsrc~i~W~--~~~g~----~l~e-vdRvLRpGGyfv~S-~pp 221 (506)
T PF03141_consen 165 AM--------IG-VL--GSQRLPFPSNAFDMVHCSRCLIPWH--PNDGF----LLFE-VDRVLRPGGYFVLS-GPP 221 (506)
T ss_pred hh--------hh-hh--ccccccCCccchhhhhcccccccch--hcccc----eeeh-hhhhhccCceEEec-CCc
Confidence 10 00 00 11123335678998855433 4552 11111 3334 68999999998755 444
No 262
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.021 Score=50.70 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
....+.+||||.-||+++..+++. +..+|.+||..-.-+.. .+. .|||+.++..-=..++.. ..+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~-----kLR----~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHW-----KLR----NDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCH-----hHh----cCCcEEEEecCChhhCCHHHcccCCC
Confidence 467899999999999999999986 58999999985433221 111 478887766543333422 235789
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+|++|...-. -...+.. +...|+|+|-++.
T Consensus 147 ~~v~DvSFIS---------L~~iLp~-l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFIS---------LKLILPA-LLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehhh---------HHHHHHH-HHHhcCCCceEEE
Confidence 9999975311 1133444 5667777765554
No 263
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.25 E-value=0.034 Score=51.07 Aligned_cols=79 Identities=23% Similarity=0.206 Sum_probs=62.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----cCCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~----~~~~ 175 (297)
.+..-.+|.=.|.|+.++.+++..+ ..+++++|.||.+++.|++.+... ++|++++++....+... .-.+
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~ 96 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGK 96 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCc
Confidence 4457788888899999999998654 567999999999999999987533 47999999876554322 2358
Q ss_pred ceEEEEcCC
Q 022451 176 YDVIIGDLA 184 (297)
Q Consensus 176 yD~Ii~D~~ 184 (297)
+|-|+.|+-
T Consensus 97 vDGiL~DLG 105 (314)
T COG0275 97 VDGILLDLG 105 (314)
T ss_pred eeEEEEecc
Confidence 999999984
No 264
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.24 E-value=0.012 Score=48.18 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=46.7
Q ss_pred CCCCeEEEEccchhHHHHHHHh-----cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch
Q 022451 101 PNPKTIFIMGGGEGSTAREILR-----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA 165 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da 165 (297)
.++.+|+|+|+|-|.++..++. . +..+|++||.++..++.++++.......+ ..++++..++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccch
Confidence 5688999999999999999887 4 56799999999999999988754321111 23455555543
No 265
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.18 E-value=0.051 Score=53.78 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC----CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----c
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----R 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~----~ 172 (297)
.+..+|.+-.||+|++.....++.. ...+.+.|+++...++|+.++-+++.. . .+.+..+|-..-... .
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--~-~~~i~~~dtl~~~~~~~~~~ 261 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--G-DANIRHGDTLSNPKHDDKDD 261 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--c-cccccccccccCCcccccCC
Confidence 3556899999999998766665421 267999999999999999998766421 1 355666664332211 3
Q ss_pred CCCceEEEEcCCCC---CCC--------------C-CccC-cccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHH
Q 022451 173 KESYDVIIGDLADP---IEG--------------G-PCYK-LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC 233 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~---~~~--------------~-p~~~-L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~ 233 (297)
..+||.|+.+++.. |.. + +... --...|++. +...|+|+|..++-. +.++.........
T Consensus 262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aaivl-~~gvlfr~~~e~~ 339 (489)
T COG0286 262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAAIVL-PDGVLFRGGAEKD 339 (489)
T ss_pred ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEEEEe-cCCcCcCCCchHH
Confidence 46799999998742 211 0 0001 111568888 789999998555443 2222233233455
Q ss_pred HHHHHHh
Q 022451 234 IYNTLRQ 240 (297)
Q Consensus 234 i~~~l~~ 240 (297)
+.+.+-+
T Consensus 340 IR~~l~~ 346 (489)
T COG0286 340 IRKDLLE 346 (489)
T ss_pred HHHHHHh
Confidence 5555544
No 266
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.15 E-value=0.011 Score=51.65 Aligned_cols=107 Identities=22% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+....|.|+|||.+.++..+-. ..+|...|+-. .+++ +...|... +.-.++..|++
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-----------------~n~~--Vtacdia~-vPL~~~svDv~ 126 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-----------------PNPR--VTACDIAN-VPLEDESVDVA 126 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SSTT--EEES-TTS--S--TT-EEEE
T ss_pred cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC-----------------CCCC--EEEecCcc-CcCCCCceeEE
Confidence 34456899999999999977542 23566666621 1233 55567532 44456889999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+..+.--. ---.+|+.+ +.|.|+|||.|.+-.. .+.-.......+.+.+.
T Consensus 127 VfcLSLMG-------Tn~~~fi~E-A~RvLK~~G~L~IAEV----~SRf~~~~~F~~~~~~~ 176 (219)
T PF05148_consen 127 VFCLSLMG-------TNWPDFIRE-ANRVLKPGGILKIAEV----KSRFENVKQFIKALKKL 176 (219)
T ss_dssp EEES---S-------S-HHHHHHH-HHHHEEEEEEEEEEEE----GGG-S-HHHHHHHHHCT
T ss_pred EEEhhhhC-------CCcHHHHHH-HHheeccCcEEEEEEe----cccCcCHHHHHHHHHHC
Confidence 98876211 112489999 8999999999977642 12222345666666654
No 267
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.044 Score=51.61 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc--CC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH----H--
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH--KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE----L-- 169 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~--~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~----l-- 169 (297)
..+..+|||+++..|+=+.++++. .. ...|.+=|.|+.-+...+.-.... ..+++.+...|+..+ +
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceecccccccc
Confidence 467789999999999988777763 11 237999999998887766544322 345565555555332 1
Q ss_pred --hccCCCceEEEEcCC---CCCC-CCC-----------cc--CcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchH
Q 022451 170 --ESRKESYDVIIGDLA---DPIE-GGP-----------CY--KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV 230 (297)
Q Consensus 170 --~~~~~~yD~Ii~D~~---~~~~-~~p-----------~~--~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~ 230 (297)
......||-|++|.+ |... ..+ .. +......+.. ..+.|++||.++-.+++-+-..+...
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccCCCchhhHHH
Confidence 112357999999987 2110 011 00 1122345555 46899999999988764321223334
Q ss_pred HHHHHHHHHhhCC
Q 022451 231 FSCIYNTLRQVFK 243 (297)
Q Consensus 231 ~~~i~~~l~~~F~ 243 (297)
.+.+++.....++
T Consensus 308 V~~~L~~~~~~~~ 320 (375)
T KOG2198|consen 308 VQEALQKVGGAVE 320 (375)
T ss_pred HHHHHHHhcCccc
Confidence 4444444444444
No 268
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0096 Score=53.52 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=78.7
Q ss_pred CCeEEEEccchhHHHHHHHhcC------------CCcEEEEEECCHHHHHHHHhh--hhh------------c-------
Q 022451 103 PKTIFIMGGGEGSTAREILRHK------------TVEKVVMCDIDEEVVEFCKSY--LVV------------N------- 149 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~------------~~~~v~~VEid~~vi~~a~~~--f~~------------~------- 149 (297)
.-.|+++|.|+|.....+.+.. ..-+++.+|.+|.....++.. ++. .
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 4467888999998655444321 234678889888655443321 100 0
Q ss_pred cCCC-CCCCeEEEEcchHHHHhccCC---CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 150 KEAF-SDPRLELVINDARAELESRKE---SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 150 ~~~~-~~~rv~~~~~Da~~~l~~~~~---~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...+ ..-.+.++++|++..+..... ++|+.++|.|.|.. .| .+++.++++. ++++..|||.++..+
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~s 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATFA 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceechH
Confidence 0112 234567899999999877655 79999999998863 33 8899999999 899999999998753
No 269
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.95 E-value=0.032 Score=45.77 Aligned_cols=107 Identities=23% Similarity=0.192 Sum_probs=64.7
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC-CceEEEEcCC-CCCCCC--CccCcccHHHHHH
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLA-DPIEGG--PCYKLYTKSFYEF 203 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~-~yD~Ii~D~~-~~~~~~--p~~~L~t~ef~~~ 203 (297)
+|.+.||-+++++.+++.+.... ...|++++.+.=......-+. +.|+++.++- -|..+. ....--|...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 58999999999999999887442 125899998876554333334 8999999874 232110 0011234567777
Q ss_pred HHcccCCCCcEEEEec--CCCCCcCCchHHHHHHHHHHhh
Q 022451 204 VVKPRLNPEGIFVTQA--GPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 204 ~~~~~L~pgGvl~~~~--~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+.+.|+|||++++-. +++ ...+....+.+.+++.
T Consensus 78 -al~lL~~gG~i~iv~Y~GH~---gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 78 -ALELLKPGGIITIVVYPGHP---GGKEESEAVEEFLASL 113 (140)
T ss_dssp -HHHHEEEEEEEEEEE--STC---HHHHHHHHHHHHHHTS
T ss_pred -HHHhhccCCEEEEEEeCCCC---CCHHHHHHHHHHHHhC
Confidence 689999999988765 333 1233444555555543
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.80 E-value=0.067 Score=50.25 Aligned_cols=93 Identities=24% Similarity=0.266 Sum_probs=63.7
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~~~~~y 176 (297)
.+.++|+++|+| .|.++.++++... .+|++++++++-.+.|++.-. -.++. .|..+-++ +.+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~~~---~~~ 230 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEAVK---EIA 230 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHHhH---hhC
Confidence 567899999887 4456777777554 899999999999999998521 12222 33333333 349
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|+|+.-.. + .-+.. .-+.|+++|.+++-..+
T Consensus 231 d~ii~tv~-~------------~~~~~-~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-P------------ATLEP-SLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-h------------hhHHH-HHHHHhcCCEEEEECCC
Confidence 99998754 2 12233 45799999999877544
No 271
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.66 E-value=0.07 Score=52.92 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC--------eEEEEcchH----H
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR--------LELVINDAR----A 167 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r--------v~~~~~Da~----~ 167 (297)
.++.+|+++|+|.-+ .+...++..+. +|+++|.+++..+.+++. +......+... ++-...|.. +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 358999999999544 45666666554 899999999999999984 31100000000 000111110 1
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+.+.-+.+|+||.-...|.. +...+++ ++ +-+.++|||+++.-.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~--~aP~lit----~~-~v~~mkpGgvIVdvg 285 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGK--PAPKLIT----AE-MVASMKPGSVIVDLA 285 (509)
T ss_pred HHHhccCCCCEEEECCCCCcc--cCcchHH----HH-HHHhcCCCCEEEEEc
Confidence 111112469999987765432 2223333 44 567888999886543
No 272
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.64 E-value=0.072 Score=49.46 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=64.7
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD 177 (297)
....+||++|+| .|..+...++..+..+|.++|+++.-+++||+ |+...- ....+-. ..++.++.++.. ...+|
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCC
Confidence 567899999999 45566667777788999999999999999999 653310 0011111 223444444332 35588
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.|--.-. . .-++. .-..|+.+|.+++-
T Consensus 245 ~~~dCsG~----~--------~~~~a-ai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 245 VTFDCSGA----E--------VTIRA-AIKATRSGGTVVLV 272 (354)
T ss_pred eEEEccCc----h--------HHHHH-HHHHhccCCEEEEe
Confidence 88754321 1 12233 45789999996544
No 273
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.55 E-value=0.09 Score=46.14 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=66.2
Q ss_pred CCCCeEEEEccchhHHHHHHH--hcCCCcEEEEEECCHHHHHHHHhhhhhccC---------------------------
Q 022451 101 PNPKTIFIMGGGEGSTAREIL--RHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------------------------- 151 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~--~~~~~~~v~~VEid~~vi~~a~~~f~~~~~--------------------------- 151 (297)
..|-.+-|-+||+|.++..+. .......|.+-|||++++++|++++.+...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 567789999999999865443 333467899999999999999998753210
Q ss_pred ----------CC-CCCCeEEEEcchHHHHh----ccCCCceEEEEcCCC----CCCC-CCccCcccHHHHHHHHcccCCC
Q 022451 152 ----------AF-SDPRLELVINDARAELE----SRKESYDVIIGDLAD----PIEG-GPCYKLYTKSFYEFVVKPRLNP 211 (297)
Q Consensus 152 ----------~~-~~~rv~~~~~Da~~~l~----~~~~~yD~Ii~D~~~----~~~~-~p~~~L~t~ef~~~~~~~~L~p 211 (297)
.. ...-..+...|.++.-. ......|+|+.|++- .|.. .+ .--...+++. +...|-+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~--~~p~~~ml~~-l~~vLp~ 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGS--GGPVAQMLNS-LAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS-----HHHHHHHHHH-HHCCS-T
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCC--CCcHHHHHHH-HHhhCCC
Confidence 00 12336688888766421 223446999999982 3432 11 1123568888 8999977
Q ss_pred CcEEEEe
Q 022451 212 EGIFVTQ 218 (297)
Q Consensus 212 gGvl~~~ 218 (297)
++++++.
T Consensus 207 ~sVV~v~ 213 (246)
T PF11599_consen 207 RSVVAVS 213 (246)
T ss_dssp T-EEEEE
T ss_pred CcEEEEe
Confidence 7888873
No 274
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.51 E-value=0.041 Score=49.57 Aligned_cols=86 Identities=24% Similarity=0.247 Sum_probs=57.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+...-|.|+|||.+-++.. . ...|...|+- ..+-+++..|.+. +.-.++..|+++
T Consensus 179 ~~~~vIaD~GCGEakiA~~---~--~~kV~SfDL~-------------------a~~~~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS---E--RHKVHSFDLV-------------------AVNERVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhhc---c--ccceeeeeee-------------------cCCCceeeccccC-CcCccCcccEEE
Confidence 4455688899999988861 1 2345555551 1223455667665 555678899988
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+.-- ...+ .+|+.+ +.+.|++||.+-+-.
T Consensus 234 ~CLSLM-----gtn~--~df~kE-a~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 234 FCLSLM-----GTNL--ADFIKE-ANRILKPGGLLYIAE 264 (325)
T ss_pred eeHhhh-----cccH--HHHHHH-HHHHhccCceEEEEe
Confidence 877521 1133 389999 899999999987654
No 275
>PTZ00357 methyltransferase; Provisional
Probab=95.42 E-value=0.034 Score=56.28 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=65.0
Q ss_pred eEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCC------CCCeEEEEcchHHHHhcc--
Q 022451 105 TIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS------DPRLELVINDARAELESR-- 172 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~------~~rv~~~~~Da~~~l~~~-- 172 (297)
.|+++|+|=|-+...+++. .-..+|.+||-||..+...+.... +...+. +.+|+++..|.|.+-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~-N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWA-NDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHh-cccccccccccCCCeEEEEeCccccccccccc
Confidence 4899999999987665542 223589999999664433333221 111121 467999999999983211
Q ss_pred --------CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCC----CcE
Q 022451 173 --------KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP----EGI 214 (297)
Q Consensus 173 --------~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p----gGv 214 (297)
-+++|+||+.+-..+. .+.| +.|=+.- +.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFG---DNEL-SPECLDG-aQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLG---DNEL-SPECLEA-FHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccc---cccC-CHHHHHH-HHHhhhhhcccccc
Confidence 1379999998764331 1222 4566666 5667765 776
No 276
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.38 E-value=0.0035 Score=54.55 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=63.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..|.++||||+|+|-++..+..++ .+|.+.|++..|....++. +.+++. ..++++ .+-+||+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~-t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQ-TDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhh-cCceeehHH
Confidence 457899999999999999888764 6799999999998876652 222222 234553 456899986
Q ss_pred Ec-CCCCCCCCCccCcccHHHHHHHHcccCCC-CcEEEEe
Q 022451 181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNP-EGIFVTQ 218 (297)
Q Consensus 181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~p-gGvl~~~ 218 (297)
+- +-|-. ..| ...++. ++.+|+| +|..++.
T Consensus 175 clNlLDRc-~~p------~kLL~D-i~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLDRC-FDP------FKLLED-IHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhh-cCh------HHHHHH-HHHHhccCCCcEEEE
Confidence 53 21211 022 156677 7889999 8866544
No 277
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.025 Score=47.48 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=73.1
Q ss_pred CCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccCCCceEE
Q 022451 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~~~yD~I 179 (297)
.+++||++|+|--++ +..++...+...|...|-+++.++-.++-...+.. ..-.+..+..-+-... .+....+||+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cccceehhhHHHHhhhHHHHhhCcccEE
Confidence 358899999984444 45555556788999999999999988876433210 0112222222211111 11234589999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+..--- ...-+.....+. ++..|+|.|.-.+. +| ...+.++...+....+
T Consensus 108 laADCl------FfdE~h~sLvdt-Ik~lL~p~g~Al~f--sP---RRg~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 108 LAADCL------FFDEHHESLVDT-IKSLLRPSGRALLF--SP---RRGQSLQKFLDEVGTV 157 (201)
T ss_pred Eeccch------hHHHHHHHHHHH-HHHHhCcccceeEe--cC---cccchHHHHHHHHHhc
Confidence 874210 001122344555 79999999986554 34 3455566665555544
No 278
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.34 E-value=0.1 Score=48.65 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=59.4
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.++||++|+| .|..+.++++..+..+|++++.+++-.+.++++ +... . +.....|..+.+.. ...+|+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~-v-----i~~~~~~~~~~~~~-~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK-L-----VNPQNDDLDHYKAE-KGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE-E-----ecCCcccHHHHhcc-CCCCCEEE
Confidence 46899999875 334456667766666899999999999999884 3210 0 00011223333322 24589887
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-. .. .+ ..++. +.+.|+++|.++.-.
T Consensus 241 d~-~G----~~-------~~~~~-~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EV-SG----HP-------SSINT-CLEVTRAKGVMVQVG 266 (343)
T ss_pred EC-CC----CH-------HHHHH-HHHHhhcCCEEEEEc
Confidence 43 31 11 34455 567899999998654
No 279
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.22 E-value=0.23 Score=47.28 Aligned_cols=111 Identities=19% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D-a~~~l~~--~~~~y 176 (297)
.+..+||++|+|+ |..+.++++..+..+|++++.+++..+.++++.+. ..+.....| ..+.+.. ..+.+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567899999887 77788888876656799999999999999986421 111122221 3333322 22469
Q ss_pred eEEEEcCCCCCCCCCccCc---------ccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKL---------YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L---------~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+--........+...+ -+...++. +.++|+++|.++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence 9887643211000000000 12245566 678999999997653
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=95.19 E-value=0.044 Score=50.22 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=44.6
Q ss_pred CCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCC--C-CCCccC-------cccHHHHHHHHcccCCCCcEEEEecC
Q 022451 155 DPRLELVINDARAELES-RKESYDVIIGDLADPI--E-GGPCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 155 ~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~--~-~~p~~~-------L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+.+++++|+.++++. .+++||+|++|++-.. . ...... -+-.+++.+ +.++|+|||.+++...
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence 35568999999998865 3578999999987311 0 011000 012467788 7999999999998753
No 281
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.13 E-value=0.026 Score=48.79 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=67.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
..++||++|.|+|..+....+. +...|...|++|..+...+-+...++ -.+.+...|.. - ++..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~ang-----v~i~~~~~d~~---g-~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANG-----VSILFTHADLI---G-SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhcc-----ceeEEeecccc---C-CCcceeEEEe
Confidence 4799999999999998888875 57889999999998888877665543 45778888753 2 5678999875
Q ss_pred -cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 182 -D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|.+-.. . .-...+. .+..|+..|.-++-
T Consensus 149 gDlfy~~--~-----~a~~l~~--~~~~l~~~g~~vlv 177 (218)
T COG3897 149 GDLFYNH--T-----EADRLIP--WKDRLAEAGAAVLV 177 (218)
T ss_pred eceecCc--h-----HHHHHHH--HHHHHHhCCCEEEE
Confidence 444111 0 0112222 35677777876663
No 282
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.54 E-value=0.27 Score=45.60 Aligned_cols=98 Identities=20% Similarity=0.347 Sum_probs=67.1
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+.+|.+||+|. |.-+..++-.. .+.|+.+|+|.+-++.....|. .|++.+......+- ..-.++|++|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~ie-e~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIE-EAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHH-HHhhhccEEE
Confidence 467899999874 44444444333 5789999999988887776553 56777777765543 3346799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
...--|....| .|.+++ +-+.++||++++
T Consensus 237 gaVLIpgakaP--kLvt~e-----~vk~MkpGsViv 265 (371)
T COG0686 237 GAVLIPGAKAP--KLVTRE-----MVKQMKPGSVIV 265 (371)
T ss_pred EEEEecCCCCc--eehhHH-----HHHhcCCCcEEE
Confidence 87665553333 676665 456789999886
No 283
>PRK13699 putative methylase; Provisional
Probab=94.50 E-value=0.089 Score=46.73 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=41.8
Q ss_pred eEEEEcchHHHHhc-cCCCceEEEEcCCCCC--CC--C-Cc-cC---cccHHHHHHHHcccCCCCcEEEEec
Q 022451 158 LELVINDARAELES-RKESYDVIIGDLADPI--EG--G-PC-YK---LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 158 v~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~--~~--~-p~-~~---L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+++.+|+.+.++. .+++.|+|+.|+|=.. .. + .. .. -+..+++++ +.++|+|||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence 36899999999876 4688999999987311 00 0 00 01 122456777 689999999998764
No 284
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=94.50 E-value=0.13 Score=52.32 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=90.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEE---EEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc--------h----
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVV---MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--------A---- 165 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~---~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D--------a---- 165 (297)
..+..+|..|=|+|+++..+++..|..++. ..|++..++.-+.-.-+..-....+.+-+++..| .
T Consensus 321 i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~ 400 (675)
T PF14314_consen 321 IKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPE 400 (675)
T ss_pred CCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCcc
Confidence 456789999999999999999988777776 4566555443322111100001112233333322 1
Q ss_pred -HHHHh----ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 166 -RAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 166 -~~~l~----~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
..|.. +.+-++|+|++|.-...... ..... ..+...+...|.++|.|+..+..... ...-..++..+.+
T Consensus 401 TW~YF~~l~~~~~~~idLiv~DmEV~d~~~--~~kIe-~~l~~~~~~ll~~~gtLIfKTYlt~l---~~~~~~il~~lg~ 474 (675)
T PF14314_consen 401 TWKYFVSLKKQHNLSIDLIVMDMEVRDDSI--IRKIE-DNLRDYVHSLLEEPGTLIFKTYLTRL---LSPDYNILDLLGR 474 (675)
T ss_pred HHHHHHHHHhhcCCcccEEEEeceecChHH--HHHHH-HHHHHHHHHhcCCCcEEEEehhHhhh---hcchhhHHHHHHh
Confidence 12222 23468999999985321100 01111 12222245788999999988732211 1112367888999
Q ss_pred hCCceeEEEEecCccCCceeEEEEecCC
Q 022451 241 VFKYVVPYSAHIPSFADTWGWIMVSIYN 268 (297)
Q Consensus 241 ~F~~v~~~~~~vp~~~~~~~~~~as~~~ 268 (297)
.|+.|..+.+...+....--++++.+..
T Consensus 475 ~F~~V~l~qT~~SSs~TSEVYlv~~~~~ 502 (675)
T PF14314_consen 475 YFKSVELVQTQFSSSFTSEVYLVFQKLK 502 (675)
T ss_pred hcCceEEEECCCCCCCceEEEEEEeccc
Confidence 9999998876665533223456665443
No 285
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.47 E-value=0.071 Score=48.49 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=55.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
.+++|+++|=-+-.....++.. -..+|.+||||+..+..-.+..... .-.+++.+.-|.|+-+.. -..+||+++
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 4688999994433333333333 3579999999999999877765432 235688888898876654 357899999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
.|++.
T Consensus 227 TDPpe 231 (354)
T COG1568 227 TDPPE 231 (354)
T ss_pred cCchh
Confidence 99874
No 286
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.30 E-value=0.26 Score=48.11 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=72.8
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
-++|.+|||.--+...+.+. +...|+.+|+|+.+++.....-. . ..+-.++...|..... -.++.||+|+.=.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~-~----~~~~~~~~~~d~~~l~-fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNA-K----ERPEMQMVEMDMDQLV-FEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccc-c----CCcceEEEEecchhcc-CCCcceeEEEecC
Confidence 38999999999888888775 46789999999999998776432 1 3467888888876533 3567899887644
Q ss_pred C-CCCCCCCccCcc----cHHHHHHHHcccCCCCcEEEEec
Q 022451 184 A-DPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 184 ~-~~~~~~p~~~L~----t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+ |..... ...++ -...+.. +.+.|++||.++.-+
T Consensus 123 tlDal~~d-e~a~~~~~~v~~~~~e-Vsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 123 TLDALFED-EDALLNTAHVSNMLDE-VSRVLAPGGKYISVT 161 (482)
T ss_pred ccccccCC-chhhhhhHHhhHHHhh-HHHHhccCCEEEEEE
Confidence 3 211111 11122 2235566 689999999876544
No 287
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.26 E-value=0.11 Score=46.02 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEE
Q 022451 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELV 161 (297)
Q Consensus 86 ~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~f~~~~~~~~~~rv~~~ 161 (297)
..|.+-+-++|.....+.++||++|+|.-+.- ..+++. .++|++| |+++++.++++. ++++++
T Consensus 8 ~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~~-----------~~i~~~ 74 (223)
T PRK05562 8 DIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKKY-----------GNLKLI 74 (223)
T ss_pred HHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHhC-----------CCEEEE
Confidence 45665555566666677899999999877664 344443 4677777 888888776552 467777
Q ss_pred EcchHHHHhccCCCceEEEEcCCC
Q 022451 162 INDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 162 ~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
..+...- .-..+++|+....+
T Consensus 75 ~r~~~~~---dl~g~~LViaATdD 95 (223)
T PRK05562 75 KGNYDKE---FIKDKHLIVIATDD 95 (223)
T ss_pred eCCCChH---HhCCCcEEEECCCC
Confidence 6543211 11357888876543
No 288
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.21 E-value=0.68 Score=42.40 Aligned_cols=148 Identities=20% Similarity=0.231 Sum_probs=87.6
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC-CceEEEEcC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDL 183 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~-~yD~Ii~D~ 183 (297)
++++|-+|.|++..-+.+. +...+.++|+|+...+.-+.+|+ .+..+|..+.-...-. ..|+|+..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence 6899999999988777765 35678999999999999998863 6778887665422111 599999988
Q ss_pred C-CCCC-C-------CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcC--CchHHHHHHHHHHhhCCceeEEEEec
Q 022451 184 A-DPIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAHI 252 (297)
Q Consensus 184 ~-~~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~--~~~~~~~i~~~l~~~F~~v~~~~~~v 252 (297)
+ .+.+ . .+...|+ .++++. + +.++|.-+++=|+. +... ....+..+...|.+.-=.+.......
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV~--~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna 144 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENVP--GLLSSKNGEVFKEILEELEELGYNVQWRVLNA 144 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEEG--GGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEG
T ss_pred CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEecccc--eeeccccccccccccccccccceeehhccccH
Confidence 7 2221 1 1112333 356665 3 57889887776652 2111 22457777788876421233222222
Q ss_pred CccCC----ceeEEEEecCCC
Q 022451 253 PSFAD----TWGWIMVSIYNP 269 (297)
Q Consensus 253 p~~~~----~~~~~~as~~~~ 269 (297)
..|+- ..-|++|.+.+.
T Consensus 145 ~~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 145 ADYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp GGGTSSBE-EEEEEEEEEGGG
T ss_pred hhCCCCCceeeEEEEEECCCC
Confidence 33431 245677777654
No 289
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.01 E-value=0.55 Score=44.78 Aligned_cols=98 Identities=24% Similarity=0.407 Sum_probs=55.5
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+.+|+++|+| .|..+...++..+ .+|+++|.+++-.+.+.+.+.. .+.....+. +.+.+.-..+|+||
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~-~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSNA-YEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCCH-HHHHHHHccCCEEE
Confidence 56789999998 3444455555444 4799999998877665544321 111112221 22222224689999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
....-+....| .+.+.+.++ .++++++++
T Consensus 236 ~a~~~~g~~~p--~lit~~~l~-----~mk~g~vIv 264 (370)
T TIGR00518 236 GAVLIPGAKAP--KLVSNSLVA-----QMKPGAVIV 264 (370)
T ss_pred EccccCCCCCC--cCcCHHHHh-----cCCCCCEEE
Confidence 87543321122 466665543 457777665
No 290
>PHA01634 hypothetical protein
Probab=93.69 E-value=0.23 Score=40.09 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-..++|++||++-|..+.+++-. ++.+|.++|.+|...+..++....+.-. | .... .+ +| ...=+.||+-.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~--D-K~v~-~~---eW-~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNIC--D-KAVM-KG---EW-NGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheee--e-ceee-cc---cc-cccCCCcceEE
Confidence 46899999999999999888864 6889999999999999999876543110 1 1100 01 11 12236799999
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
+|.-
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 9975
No 291
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.68 E-value=1.7 Score=38.26 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEccchh----HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 022451 89 HESLVHPALLHHPNPKTIFIMGGGEG----STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (297)
Q Consensus 89 ~e~l~~~~l~~~~~~~~VL~iG~G~G----~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D 164 (297)
.|.+. +|..-.+.+-+++..+++| +++..++.+....++++|-.|++-....++.+.-.+ ..+.++++++|
T Consensus 30 aEfIS--AlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFIS--ALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGE 104 (218)
T ss_pred HHHHH--HHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecC
Confidence 34443 3434456778888865544 344555555557789999999998888887765332 12457999998
Q ss_pred hH-HHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 165 AR-AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 165 a~-~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.. +.+.. -...|++++|.-.. . +..++|+. + .++|.|.+++-
T Consensus 105 ~~e~~~~~-~~~iDF~vVDc~~~-------d-~~~~vl~~-~--~~~~~GaVVV~ 147 (218)
T PF07279_consen 105 APEEVMPG-LKGIDFVVVDCKRE-------D-FAARVLRA-A--KLSPRGAVVVC 147 (218)
T ss_pred CHHHHHhh-ccCCCEEEEeCCch-------h-HHHHHHHH-h--ccCCCceEEEE
Confidence 65 45544 36799999997421 1 12355665 3 37777766554
No 292
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.48 E-value=1.9 Score=39.81 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=54.8
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+|.+||+|. +.++..+.+.....+|+++|.+++..+.+++. +. ... ...+..+.+ +..|+|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence 5899999985 34555555542224899999999988777652 11 011 122322333 35899999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
..+... ..++++. +...++++.+++
T Consensus 73 avp~~~---------~~~v~~~-l~~~l~~~~iv~ 97 (307)
T PRK07502 73 CVPVGA---------SGAVAAE-IAPHLKPGAIVT 97 (307)
T ss_pred CCCHHH---------HHHHHHH-HHhhCCCCCEEE
Confidence 875321 2456666 677888887664
No 293
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.31 E-value=0.12 Score=48.57 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh---hhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKS---YLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~---~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
-.|+++||+|.|.|..+..+-.. +...+++.+|.+|.+-++.-. +..... .+-|..=+..| +.-+. ..+.|
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~---td~r~s~vt~d-Rl~lp-~ad~y 186 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK---TDWRASDVTED-RLSLP-AADLY 186 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc---CCCCCCccchh-ccCCC-cccee
Confidence 35889999999988877666654 445689999999987665433 221111 11122212222 11121 23568
Q ss_pred eEEEEc-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++|++- ---|. +....++ ..++. +...++|||.|++-.
T Consensus 187 tl~i~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lVivE 225 (484)
T COG5459 187 TLAIVLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIVE 225 (484)
T ss_pred ehhhhhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEEe
Confidence 876653 21121 1111222 36677 789999999988764
No 294
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=93.23 E-value=0.72 Score=41.64 Aligned_cols=141 Identities=16% Similarity=0.271 Sum_probs=67.4
Q ss_pred CCCCCeEEEEccchhH--H--HHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC
Q 022451 100 HPNPKTIFIMGGGEGS--T--AREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~--~--~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~ 174 (297)
.|..-+||-+|+|+-- . +..+.+.. ..+.++-.|+++-+ . +--..+.+|.+.+. .+.
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------S-Da~~~~~~Dc~t~~--~~~ 120 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------S-DADQSIVGDCRTYM--PPD 120 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSSEEEES-GGGEE--ESS
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------c-ccCCceeccccccC--CCC
Confidence 3667899999987421 1 22233333 34455556664322 1 22356789988874 467
Q ss_pred CceEEEEcCCCCCCCCC-ccCcccHHHHHH---HHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEE
Q 022451 175 SYDVIIGDLADPIEGGP-CYKLYTKSFYEF---VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSA 250 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p-~~~L~t~ef~~~---~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (297)
++|+||+|.+++....- ....-...||.. ++++.|+-||-+++...-.. | + .++.+ +.+.|.....|-+
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S-w-~----~~Lye-l~~~F~~wt~FcT 193 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS-W-N----AQLYE-LMGYFSWWTCFCT 193 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--------HHHHH-HHTTEEEEEEEEE
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc-c-c----HHHHH-HHhhcccEEEEec
Confidence 89999999997542110 001111123332 25799999999998864211 2 1 23333 4567888888877
Q ss_pred ecCccCCceeEEEEec
Q 022451 251 HIPSFADTWGWIMVSI 266 (297)
Q Consensus 251 ~vp~~~~~~~~~~as~ 266 (297)
.+.+... -.|+++..
T Consensus 194 ~VNtSSS-EaFLigiN 208 (299)
T PF06460_consen 194 AVNTSSS-EAFLIGIN 208 (299)
T ss_dssp GGGTTSS--EEEEEEE
T ss_pred ccCcccc-ceeEEeee
Confidence 6654322 35555543
No 295
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.14 E-value=0.078 Score=46.74 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=46.9
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~ 168 (297)
..-|..||.|.|++++.++.. +..++++||+|+..+.-.+---.. .+.+..+|++|+..|
T Consensus 51 ~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc-----CCcceEEecccccee
Confidence 456889999999999999985 578999999999988765532221 245889999998654
No 296
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.14 E-value=0.25 Score=42.58 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=35.4
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (297)
...++.-|||--+|+|+++.++.+. ..+..++|+++..+++|++
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred hhccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 3466788999999999999999986 4689999999999999975
No 297
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.09 E-value=0.99 Score=44.89 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC--------CCCeEEEEcchHH----H
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--------DPRLELVINDARA----E 168 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--------~~rv~~~~~Da~~----~ 168 (297)
++.+|+++|+|.-+ .+..+++..+ ..|+++|.++...+.+++. +......+ +.-.+....|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 57899999998554 4455555443 5699999999999988873 32100000 0001111111111 1
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+.+.-+.+|+||.-..-|. .+...|.+++. -+.++||++++
T Consensus 241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~em-----v~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPG--KPAPKLITEEM-----VDSMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCC--CCCCeeehHHH-----HhhCCCCCEEE
Confidence 2222356999988775444 23336777664 34566776654
No 298
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.07 E-value=2.4 Score=41.82 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=59.4
Q ss_pred eEEEEccchhHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC-------CCCeEEEEcchHHHHhccCC
Q 022451 105 TIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-------DPRLELVINDARAELESRKE 174 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~-------~~rv~~~~~Da~~~l~~~~~ 174 (297)
+|.+||+|-.+++.. +++.....+|+++|+|++.++..++-.. .....++ ..+++ ...|..+.+ .
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i----~ 77 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV----A 77 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH----h
Confidence 689999996665433 4443224679999999999998776321 1100000 00111 111111111 3
Q ss_pred CceEEEEcCCCCCCC-C-----CccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 175 SYDVIIGDLADPIEG-G-----PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~-~-----p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
.-|+||+..+.|... + .+..-+-.+..+. +.+.|+++-++++.+..|
T Consensus 78 ~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp 130 (473)
T PLN02353 78 EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP 130 (473)
T ss_pred cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC
Confidence 478888876655421 0 1111122345555 578888877777665433
No 299
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.05 E-value=1.9 Score=38.85 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=57.8
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.+.++||++|+| .|.++.++++..+..+|++++.+++-.+.++++ +... .. +. .+..+.+.. ....+|
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~~-~i-~~------~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF-GATA-LA-EP------EVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCcE-ec-Cc------hhhHHHHHHHhCCCCCC
Confidence 356799999875 333456666666555699999999998888874 2110 00 11 111122221 234699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+--... + ..++. +.+.|+++|.++...
T Consensus 190 ~vid~~G~-----~-------~~~~~-~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSGA-----T-------AAVRA-CLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCCC-----h-------HHHHH-HHHHhcCCCEEEEec
Confidence 88743211 1 33455 568899999998654
No 300
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.90 E-value=0.31 Score=46.85 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=56.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC-eEEEEcchHHHHhc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELES 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r-v~~~~~Da~~~l~~ 171 (297)
..+.-|.|+.||.|-.+.-+++- .++|++-|++|++++..+.+.+++.- +|. ++++..||..|+++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccccc---chhheeeecccHHHHhhc
Confidence 56778999999999998887764 48999999999999999999887752 454 99999999999964
No 301
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=92.87 E-value=0.22 Score=41.10 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=56.1
Q ss_pred hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCC
Q 022451 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKE 174 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~ 174 (297)
....-+..||++|.|.|-+=..+.+..|..+|.+.|-- .+.|=.- --|.-.++.+|+++.+.. ...
T Consensus 24 ~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~------l~~hp~~-----~P~~~~~ilGdi~~tl~~~~~~g~ 92 (160)
T PF12692_consen 24 QVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA------LACHPSS-----TPPEEDLILGDIRETLPALARFGA 92 (160)
T ss_dssp HTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG--------GGGEEES-HHHHHHHHHHH-S
T ss_pred HhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee------cccCCCC-----CCchHheeeccHHHHhHHHHhcCC
Confidence 34455688999999999999888888889999999973 1222111 113446899999988765 233
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+.-++=.|.-... +.....+...+.-.+..+|.|||+++-
T Consensus 93 ~a~laHaD~G~g~---~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 93 GAALAHADIGTGD---KEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp -EEEEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 4445555543221 112232333444346799999998863
No 302
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.73 E-value=0.46 Score=43.40 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=62.5
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~-------~rv~~~~~Da~~~ 168 (297)
++|.+||+| ++.++..+++. ..+|+++|.|++.++.++++.... ...... .+++ ...|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHh
Confidence 579999998 44566666654 357999999999999887653210 000000 1222 22332222
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+ +..|+|+...++.. -...++|.. +.+.++|+.++++++.
T Consensus 79 ~----~~aD~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 V----ADADLVIEAVPEKL-------ELKKAVFET-ADAHAPAECYIATNTS 118 (288)
T ss_pred h----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCC
Confidence 2 45799998876421 113467777 6888999888878763
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.61 E-value=0.66 Score=42.66 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
...++||++|+| -|.++.++++..+...|.++|.+++-++.|+++... ++. .+ ....+|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i------~~~-----~~-------~~~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL------DPE-----KD-------PRRDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc------Chh-----hc-------cCCCCCEE
Confidence 346789999865 455667777776666788889998877776653111 110 00 13468988
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+ |... .+ ..++. +.+.|+++|.+++-.
T Consensus 205 i-d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 Y-DASG----DP-------SLIDT-LVRRLAKGGEIVLAG 231 (308)
T ss_pred E-ECCC----CH-------HHHHH-HHHhhhcCcEEEEEe
Confidence 7 4331 11 34455 568999999998653
No 304
>PRK11524 putative methyltransferase; Provisional
Probab=92.57 E-value=0.36 Score=44.21 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=41.4
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
...++.-|||--+|+|+++.++.+. ..+..++|+|++.+++|++.+.
T Consensus 205 ~S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 3467888999999999999998886 4789999999999999999874
No 305
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.55 E-value=1.6 Score=40.80 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=79.7
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-C-CceEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVII 180 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-~-~yD~Ii 180 (297)
..++++|-+|.|++..-+... +..-+.++|+||..++.-+.+|+. ..++..|..++....- . .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 357999988888887666654 356788999999999999987742 3566677766544322 2 789999
Q ss_pred EcCCC-CCC-C-------CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCC-chHHHHHHHHHHhh
Q 022451 181 GDLAD-PIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQV 241 (297)
Q Consensus 181 ~D~~~-~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~-~~~~~~i~~~l~~~ 241 (297)
..++= +.+ + .+-..| ..+|.+. -..++|. ++++. +.|+.... ...++.+.+.|++.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~--I~~~~P~-~fv~E-NV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL--IEQLRPK-FFVLE-NVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCcccee-eHHHHHH--HHhhCCC-EEEEe-cCchHHhcCchHHHHHHHHHHHc
Confidence 98872 221 1 122233 4577776 3688883 33333 33432222 34677778888776
No 306
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.42 E-value=0.85 Score=42.63 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=57.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEEC---CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDI---DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
..+.+||++|+|+ |.++.++++..+. +|++++. ++.-.+.+++. +... +.....|..+ .. ....+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~-Ga~~-------v~~~~~~~~~-~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL-GATY-------VNSSKTPVAE-VK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc-CCEE-------ecCCccchhh-hh-hcCCC
Confidence 3578999998763 4456677776554 7999986 67788888764 2110 1001112111 11 23468
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+||--.. .+ ..+.. ..+.|+++|.+++..
T Consensus 240 d~vid~~g-----~~-------~~~~~-~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEATG-----VP-------PLAFE-ALPALAPNGVVILFG 269 (355)
T ss_pred CEEEECcC-----CH-------HHHHH-HHHHccCCcEEEEEe
Confidence 98875432 11 34555 568999999987654
No 307
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=92.41 E-value=1.6 Score=40.09 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=68.8
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+|+++|+| +|.+++.+.+......|++.|.+....+.+.+. +.. +.. ..+ .........|+||+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~~----~~~---~~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DEL----TVA---GLAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----ccc----ccc---hhhhhcccCCEEEE
Confidence 579999988 677778777765566788888888887777642 111 110 011 11122356899999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY 244 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~ 244 (297)
..|-. .+.+++++ +...|++|-+++ -.++ . -..++..+++..+.
T Consensus 71 avPi~---------~~~~~l~~-l~~~l~~g~iv~-Dv~S-----~---K~~v~~a~~~~~~~ 114 (279)
T COG0287 71 AVPIE---------ATEEVLKE-LAPHLKKGAIVT-DVGS-----V---KSSVVEAMEKYLPG 114 (279)
T ss_pred eccHH---------HHHHHHHH-hcccCCCCCEEE-eccc-----c---cHHHHHHHHHhccC
Confidence 87522 25588888 778899887764 3322 1 14566677766654
No 308
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.25 E-value=4.8 Score=33.98 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=62.5
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
-.+++|.+||+|. |......++-+ ..+|.++|.++.....+... .+ ...+..+.+. +.|+|
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aDiv 95 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QADIV 95 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-SEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhhhh
Confidence 3578999999973 33333333334 46999999999876622221 12 2235555554 48999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
++.++... . ...+++.++|+. +++|. +++|+.- ...-...++++.+++
T Consensus 96 ~~~~plt~--~-T~~li~~~~l~~-----mk~ga-~lvN~aR----G~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 96 SLHLPLTP--E-TRGLINAEFLAK-----MKPGA-VLVNVAR----GELVDEDALLDALES 143 (178)
T ss_dssp EE-SSSST--T-TTTSBSHHHHHT-----STTTE-EEEESSS----GGGB-HHHHHHHHHT
T ss_pred hhhhcccc--c-cceeeeeeeeec-----cccce-EEEeccc----hhhhhhhHHHHHHhh
Confidence 99987422 1 247888887665 45555 5578641 112233567777765
No 309
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.98 E-value=1 Score=41.83 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
.++++||+.|+|+ |..+.++++..+...|++++.+++-.+.++++ +... . +.....+..+..+. ....+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~~-~-----i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAMQ-T-----FNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCce-E-----ecCcccCHHHHHHHhcCCCCCe
Confidence 4578999998753 33445566666555689999999988888763 2110 0 11111121222221 2346886
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++|... .+ ..+.. ..+.|+++|.+++-.
T Consensus 232 ~v~d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAG----VP-------QTVEL-AIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCC----CH-------HHHHH-HHHHhhcCCEEEEEc
Confidence 7777542 11 34455 568899999988653
No 310
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.92 E-value=0.84 Score=39.61 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=24.9
Q ss_pred CCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|+|+ |+. +..|.+ .+..+++.+|-|.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCCE
Confidence 567899999984 443 444444 4678999999983
No 311
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.87 E-value=1 Score=42.42 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=59.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
....+||++|+|. |.++.++++..+..+|++++.++.-.+.++++ +.. .-+.....|..+.+.. ....+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCE
Confidence 4568999998653 44556667766555799999999999999864 211 0011111233333332 2236898
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+-.... + +.++. +.+.|+++|.++...
T Consensus 263 vid~~G~-----~-------~~~~~-~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AFEMAGS-----V-------PALET-AYEITRRGGTTVTAG 290 (371)
T ss_pred EEECCCC-----h-------HHHHH-HHHHHhcCCEEEEEc
Confidence 8843211 1 33455 567899999987653
No 312
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.80 E-value=2.7 Score=40.75 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=58.3
Q ss_pred CeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-----------
Q 022451 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE----------- 170 (297)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~----------- 170 (297)
++|.+||+|--+ ++..+++. ..+|+++|+|++.++..++-. +.+...+..+.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence 579999998433 44555554 368999999999988644321 1111111111111
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
...+..|+||+..+.|........+ +-.+..+. +.+.|++|-+++..+.
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST 120 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence 0113579999998865321111122 22234566 6788888877776654
No 313
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.72 E-value=6.7 Score=37.97 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=61.5
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
...++|+++|+|.=+ .....++.. ..+|+++|.||.-...|+.. + .++. +..+.+ +..|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~-G----------~~v~--~leeal----~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD-G----------FRVM--TMEEAA----KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc-C----------CEeC--CHHHHH----hcCCEE
Confidence 468899999998643 334444444 45899999999654444431 1 1111 222223 347998
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS 249 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (297)
+.-. +. ..+++.+ ....+++|++++ |.+....-.+.+.+.+....-+.+-+.+..|.
T Consensus 255 ItaT------G~-~~vI~~~-----~~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 255 ITAT------GN-KDVIRGE-----HFENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred EECC------CC-HHHHHHH-----HHhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 7632 11 1222222 346788888775 55433221233333333333334556666554
No 314
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.70 E-value=1.5 Score=39.49 Aligned_cols=124 Identities=16% Similarity=0.181 Sum_probs=68.2
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceEEEEcC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL 183 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~Ii~D~ 183 (297)
|..=.|+=.+++.+++. ..+...+|+.|.-.+..+++|.. +++++++..|+.+-+.. +..+==+|++|+
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 44445777788888864 57999999999999999988753 47999999999987765 345667999998
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeE
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~ 247 (297)
+-.. +...---.+.+.. +.++- +.|+++++- | ....+..+.+.+.+.+. .+.+..
T Consensus 134 pYE~---~~dy~~v~~~l~~-a~kR~-~~G~~~iWY--P--i~~~~~~~~~~~~l~~~~~~~~l~ 189 (245)
T PF04378_consen 134 PYEQ---KDDYQRVVDALAK-ALKRW-PTGVYAIWY--P--IKDRERVDRFLRALKALGIKKVLR 189 (245)
T ss_dssp ---S---TTHHHHHHHHHHH-HHHH--TTSEEEEEE--E--ESSHHHHHHHHHHHHHH-SSE-EE
T ss_pred CCCC---chHHHHHHHHHHH-HHHhc-CCcEEEEEe--e--cccHHHHHHHHHHHHhcCCCCeEE
Confidence 5221 1111001122222 12222 579998885 3 34555667788888765 444433
No 315
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.60 E-value=0.49 Score=44.04 Aligned_cols=120 Identities=14% Similarity=0.229 Sum_probs=73.2
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC-
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA- 184 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~- 184 (297)
|+++-||.|++..-+.+. +..-+.++|+|+...+..+.+|+ . .++.+|..+.-...-...|+++..++
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~---------~-~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG---------N-KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC---------C-CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 578888888888776654 35567789999999999988763 1 34567876654322346899999877
Q ss_pred CCCC-C-------CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc--CCchHHHHHHHHHHhh
Q 022451 185 DPIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQV 241 (297)
Q Consensus 185 ~~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~--~~~~~~~~i~~~l~~~ 241 (297)
.+.+ . .+...| -.++++. + +.++|.=+++=|+ |+.. ...+.+..+++.|++.
T Consensus 70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~ 131 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEEL 131 (315)
T ss_pred cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhC
Confidence 2221 1 111122 2456665 3 5678875554443 2211 1234566777777654
No 316
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.56 E-value=3.6 Score=40.03 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=60.4
Q ss_pred CCCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
...++|+++|+|.=+. ....++..+ .+|+++|+||.-...+... + .++. +..+.+ +..|+|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v~--~l~eal----~~aDVV 271 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRVM--TMEEAA----ELGDIF 271 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEec--CHHHHH----hCCCEE
Confidence 3678999999985332 333344443 5899999998765444331 1 1111 222333 358998
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS 249 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (297)
+... +. ...++. . ..+.+++|+++ +|.+..+.-.+...+..+....+++-|++.-|.
T Consensus 272 I~aT------G~-~~vI~~----~-~~~~mK~Gail-iNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~ 328 (425)
T PRK05476 272 VTAT------GN-KDVITA----E-HMEAMKDGAIL-ANIGHFDNEIDVAALEELAVKWREIKPQVDEYT 328 (425)
T ss_pred EECC------CC-HHHHHH----H-HHhcCCCCCEE-EEcCCCCCccChHHHhhcCcceeecCCCceEEE
Confidence 7642 11 122222 2 45678888877 465543222222222222112334456665554
No 317
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.52 E-value=0.44 Score=40.02 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=60.4
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE-EEEcchHHHHhccCCCceEEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~-~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.++++++|..-=-+-..++++ +..+|..||-++--++ .. | .+|+. +...|...-.+...++||++.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~-~--------~dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EE-F--------RDRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--cc-c--------ccccccccHHHHHHHHHHhhccchhhhe
Confidence 578999998755555555555 5788999998763221 11 0 12332 2233333222334577998766
Q ss_pred cCC-CCC----CCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLA-DPI----EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~-~~~----~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-.. ++. .+.|....-+..-+.. +++.||+||.|.+-.
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLGV 111 (177)
T ss_pred echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEEe
Confidence 543 221 1223333344566777 799999999887664
No 318
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.52 E-value=0.35 Score=46.78 Aligned_cols=54 Identities=15% Similarity=0.360 Sum_probs=43.0
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~ 162 (297)
.||+||.|+|.+...+.+.. ...|+++|.-..|.+.|++-...++ -.++++++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng---~SdkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNG---MSDKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCC---Cccceeeec
Confidence 57999999999999888864 6789999999999999999765443 134566554
No 319
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.47 E-value=0.85 Score=42.96 Aligned_cols=34 Identities=29% Similarity=0.594 Sum_probs=24.9
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (297)
..++||++|+|+ |+ ++..|.+ .+..+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 467899999984 33 3444444 4678999999985
No 320
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.47 E-value=0.59 Score=39.25 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=53.8
Q ss_pred CCCeEEEEccchh-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-C--CCCCeEEEEcchHHH---------
Q 022451 102 NPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F--SDPRLELVINDARAE--------- 168 (297)
Q Consensus 102 ~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~--~~~rv~~~~~Da~~~--------- 168 (297)
+|.+|+++|.|.- .-+.+++... ..+++..|..+...+..+..+...-.. . ...+-. -|-..|
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES 94 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence 5789999999844 3456666554 468999999999888777654321000 0 000001 111111
Q ss_pred -HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 169 -LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 169 -l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+.+.-..+|+|+....-+.. ....|++++-.+. |+|+-+++
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~--~~P~lvt~~~~~~-----m~~gsvIv 136 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGK--RAPRLVTEEMVKS-----MKPGSVIV 136 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTS--S---SBEHHHHHT-----SSTTEEEE
T ss_pred HHHHHHhhCcEEeeecccCCC--CCCEEEEhHHhhc-----cCCCceEE
Confidence 11112568999986543331 2347888875444 55655554
No 321
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.40 E-value=1.4 Score=41.36 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=60.4
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCce
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~yD 177 (297)
.+..+||+.|+|+ |..+.++++..+..+|++++.++.-.+.++++ +.. .-+.....|..+.+.. . ...+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GAT------HTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------eEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4578999998753 34456666766555799999999999988764 211 1111122344444433 2 24589
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+ |... .+ +.++. ..+.|+++|.+++-.
T Consensus 248 ~vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG 276 (358)
T ss_pred EEE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 887 4331 11 33455 467899999998654
No 322
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.35 E-value=1.5 Score=40.45 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=58.5
Q ss_pred CeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 104 ~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
.+||+.|+ |.|..+.++++..+..+|++++.+++-.+.+++.++.. .-+.....|..+.+.. ..+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999985 46667777887765447999999988888777644321 1111111233333432 235699888
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|... . ..+.. +.++|+++|.++..
T Consensus 230 -d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVG----G--------EISDT-VISQMNENSHIILC 253 (345)
T ss_pred -ECCC----c--------HHHHH-HHHHhccCCEEEEE
Confidence 4321 1 11344 56889999998864
No 323
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.31 E-value=1.6 Score=40.55 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=60.1
Q ss_pred CCCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.+++||+.|+| .|..+.++++..+...+++++.+++-.+.++++ +.. .-+.....|....+.. ....+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCC
Confidence 3567899999765 334456666766666799999999988888873 221 1111111232222322 23469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+-... . ...+.. +.++|+++|.++.-
T Consensus 237 d~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGG-----G-------QDTFEQ-ALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCC-----C-------HHHHHH-HHHHhhcCCEEEEe
Confidence 98885322 1 134556 67889999988754
No 324
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=0.29 Score=40.57 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=52.1
Q ss_pred HHHHHHHH-HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 022451 89 HESLVHPA-LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (297)
Q Consensus 89 ~e~l~~~~-l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~ 167 (297)
.|.+.+.- ++...+..+.+|||.|+|.+..+++++. ...-++||+||-.+..+|-+--..+ -..++++...|...
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g---~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG---CAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh---cccchhhhhhhhhh
Confidence 35554432 2233334789999999999999998864 5678999999999999887632111 12566777777654
Q ss_pred H
Q 022451 168 E 168 (297)
Q Consensus 168 ~ 168 (297)
+
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 4
No 325
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.24 E-value=2.3 Score=38.21 Aligned_cols=123 Identities=13% Similarity=0.164 Sum_probs=85.2
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceEEEEcC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL 183 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~Ii~D~ 183 (297)
|..=+|+=-+++.+++- ..++...|+-|.=..+.++.|. .+.|+++..+|+..-+.. .+++=-+|++|+
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 66777888899998874 5789999999999999999886 358999999999888765 345678999998
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC-Ccee
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KYVV 246 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F-~~v~ 246 (297)
+-.. ....-...+-+++ ..++- ++|+++++- | ....+..+++.+.+++.- +.+.
T Consensus 165 PfE~---~~eY~rvv~~l~~-~~kRf-~~g~yaiWY--P--ik~r~~~~~f~~~L~~~~i~kiL 219 (279)
T COG2961 165 PFEL---KDEYQRVVEALAE-AYKRF-ATGTYAIWY--P--IKDRRQIRRFLRALEALGIRKIL 219 (279)
T ss_pred Cccc---ccHHHHHHHHHHH-HHHhh-cCceEEEEE--e--ecchHHHHHHHHHHhhcCcccee
Confidence 7432 1011111122233 22222 479999985 3 346677788888888763 3433
No 326
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.21 E-value=2.9 Score=35.20 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
-..++++++|.|.-+ +++.+... ..+|+++|+||.- ..+.... -.++. +..+. -...|+
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~--alqA~~d---------Gf~v~--~~~~a----~~~adi 81 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIR--ALQAAMD---------GFEVM--TLEEA----LRDADI 81 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHH--HHHHHHT---------T-EEE---HHHH----TTT-SE
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHH--HHHhhhc---------CcEec--CHHHH----HhhCCE
Confidence 468899999998543 34555443 4799999999944 3333321 12222 22222 246798
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
|+.-. +. ....+.+.|+. + + +|.++.|.++.
T Consensus 82 ~vtaT------G~-~~vi~~e~~~~-m----k-dgail~n~Gh~ 112 (162)
T PF00670_consen 82 FVTAT------GN-KDVITGEHFRQ-M----K-DGAILANAGHF 112 (162)
T ss_dssp EEE-S------SS-SSSB-HHHHHH-S------TTEEEEESSSS
T ss_pred EEECC------CC-ccccCHHHHHH-h----c-CCeEEeccCcC
Confidence 88753 22 24456666665 3 3 67777888754
No 327
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=91.21 E-value=0.76 Score=42.40 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=43.3
Q ss_pred EEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE----EEcchHHH--Hhc--cCC
Q 022451 106 IFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL----VINDARAE--LES--RKE 174 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~----~~~Da~~~--l~~--~~~ 174 (297)
||+-| |+|+++.++.++ ....+|..+|.|+.-+-..++.+.... .++++++ +.+|.++. +.. ...
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~---~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF---PDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-----TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc---cccCcccccCceeecccCHHHHHHHHhhc
Confidence 57777 457776555542 345799999999999887777663211 2355654 58898765 322 234
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
+.|+|++.+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999999876
No 328
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.83 E-value=0.86 Score=39.07 Aligned_cols=109 Identities=25% Similarity=0.287 Sum_probs=54.1
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccC--------CCCCCCeEEEEcchHHHHhccC
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKE--------AFSDPRLELVINDARAELESRK 173 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~--------~~~~~rv~~~~~Da~~~l~~~~ 173 (297)
+|-++|+|-=+ ++..+++. ..+|+++|+|++.++..++-. +.... .....|+++- .|....+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 68899998433 34444443 468999999999998877632 11100 0001232222 3333333
Q ss_pred CCceEEEEcCCCCCCC-CCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 174 ESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
...|++++..+.|... +.+..-+-.+..+. +.+.|+++-++++.+..
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSS
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEE
Confidence 3478888887754321 11111122345566 67889998888877643
No 329
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.81 E-value=0.88 Score=41.39 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=62.6
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----ccC-CCCC-------CCeEEEEcchHHH
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKE-AFSD-------PRLELVINDARAE 168 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-----~~~-~~~~-------~rv~~~~~Da~~~ 168 (297)
++|.+||+| ++.++..+++. ..+|+++|++++.++.+++.+.. ... .... .++++ ..|. +.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence 479999999 56677777765 34899999999999765543210 000 0000 13332 2332 11
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+ +..|+|+...+.. .....++|+. +.+.++|+.+++.++.
T Consensus 80 ~----~~aDlVi~av~e~-------~~~k~~~~~~-l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 L----KDADLVIEAATEN-------MDLKKKIFAQ-LDEIAKPEAILATNTS 119 (282)
T ss_pred h----ccCCeeeeccccc-------HHHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 2 4579999876421 1123588888 7889999998877654
No 330
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.81 E-value=2.1 Score=39.96 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=55.4
Q ss_pred CCCCeEEEEccchhH-HHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+..+||++|+|+=+ ++.++++. .+..+|+++|.++.-++.|++ +.. . ....+ +.. ...+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~-~~~~~----~~~-~~g~d~ 225 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------T-YLIDD----IPE-DLAVDH 225 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------e-eehhh----hhh-ccCCcE
Confidence 457899999976433 34455553 445689999999988888875 211 0 01111 111 124898
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+ |.... + .+...++. ..+.|+++|.+++-.
T Consensus 226 vi-D~~G~----~----~~~~~~~~-~~~~l~~~G~iv~~G 256 (341)
T cd08237 226 AF-ECVGG----R----GSQSAINQ-IIDYIRPQGTIGLMG 256 (341)
T ss_pred EE-ECCCC----C----ccHHHHHH-HHHhCcCCcEEEEEe
Confidence 87 44321 0 01234555 568999999987653
No 331
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=90.71 E-value=0.4 Score=48.09 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=73.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-----HHHHhc--
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES-- 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-----~~~l~~-- 171 (297)
..+...||+|||..|++.+.+.+..|. .-|++|||-|.- + -|++.-+++|. +.-++.
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------p-------~~~c~t~v~dIttd~cr~~l~k~l 106 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------P-------IPNCDTLVEDITTDECRSKLRKIL 106 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------c-------CCccchhhhhhhHHHHHHHHHHHH
Confidence 456788999999999999999886554 467799996532 1 12222223332 222222
Q ss_pred cCCCceEEEEcCCCCCCCCC------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 172 RKESYDVIIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
..-+.|+|++|..... ++. ....++...++. +-..|.-||.++..... .+.+..++..+.+.|..|
T Consensus 107 ~t~~advVLhDgapnV-g~~w~~DA~~q~~L~l~al~L-A~~~l~~~g~fvtkvfr------s~dy~~ll~v~~qLf~kv 178 (780)
T KOG1098|consen 107 KTWKADVVLHDGAPNV-GGNWVQDAFQQACLTLRALKL-ATEFLAKGGTFVTKVFR------SEDYNGLLRVFGQLFKKV 178 (780)
T ss_pred HhCCCcEEeecCCCcc-chhHHHHHHHhhHHHHHHHHH-HHHHHHhcCcccccccc------CCcchHHHHHHHHHHHHH
Confidence 1234599999976322 110 001223344444 45889999998876532 233455666666666666
Q ss_pred eEE
Q 022451 246 VPY 248 (297)
Q Consensus 246 ~~~ 248 (297)
..+
T Consensus 179 ~~t 181 (780)
T KOG1098|consen 179 EAT 181 (780)
T ss_pred Hhc
Confidence 544
No 332
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.66 E-value=2.7 Score=39.22 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhcc--CC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESR--KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~~--~~ 174 (297)
.+..+||++|+|+ |..+.++++..+. +|++++.+++-.+.++++ +.. .-+.... .|..+.+... ..
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF-GAD------LTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh-CCc------eEecCccccHHHHHHHHHhhcccC
Confidence 4578999999854 4556666766554 799999999999988763 321 0011111 1333333321 23
Q ss_pred CceE---EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDV---IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~---Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|. +++|... .+ ..++. +.++|+++|.++...
T Consensus 237 g~d~~~d~v~d~~g----~~-------~~~~~-~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIFECSG----SK-------PGQES-ALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEEECCC----Ch-------HHHHH-HHHHHhcCCeEEEEC
Confidence 4552 3445432 11 34444 467899999997654
No 333
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.45 E-value=3.2 Score=38.26 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=57.5
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.++.+||++|+|+ |..+.++++..+..+|++++.+++-.+.++++ +.. .-+.....+ .+.+.. ....+|
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGAD 233 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCC
Confidence 4578999998642 33445566666555599999999988888764 211 001111122 222222 234699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-.... ...+.. ..+.|+++|.+++..
T Consensus 234 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSGN------------TAARRL-ALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCCC------------HHHHHH-HHHHhhcCCEEEEEc
Confidence 88844321 123344 467899999998653
No 334
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=90.42 E-value=3.2 Score=36.56 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=54.6
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hh-ccCCCceEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYDVII 180 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~-~~~~~yD~Ii 180 (297)
+-++|+||+=+....... .+.-.|+.+|++++--. +...|..+. +. ...++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~~~~-------------------I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQHPG-------------------ILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCCCCC-------------------ceeeccccCCCCCCcccceeEEE
Confidence 469999998644433322 23456999999864322 334443221 11 1357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcE-----EEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI-----FVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGv-----l~~~~ 219 (297)
+.+.-.. .|. .--.-+.++. +.+.|+|+|. |.+-.
T Consensus 110 ~SLVLNf--VP~-p~~RG~Ml~r-~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 110 LSLVLNF--VPD-PKQRGEMLRR-AHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred EEEEEee--CCC-HHHHHHHHHH-HHHHhCCCCccCcceEEEEe
Confidence 8875221 121 1223367777 7899999999 76654
No 335
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.40 E-value=0.37 Score=41.62 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=31.2
Q ss_pred cCCCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHH
Q 022451 99 HHPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVV 139 (297)
Q Consensus 99 ~~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi 139 (297)
..+.+++||++|.- +|....+++.. ..+|+++|++|.+-
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r 80 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMR 80 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHH
Confidence 34789999999975 77777777753 57999999999873
No 336
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.35 E-value=2.6 Score=32.44 Aligned_cols=91 Identities=24% Similarity=0.229 Sum_probs=55.7
Q ss_pred EEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--Hhc-cCCCceEEE
Q 022451 106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LES-RKESYDVII 180 (297)
Q Consensus 106 VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~-~~~~yD~Ii 180 (297)
|+++|+|.-+ ++..+.+ ...+|+++|.|++.++.+++. .+.++.+|+.+. +++ .-++.|.|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 5777776332 2333333 235899999999999988863 267889998643 443 236799888
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...+.. . +..... ..+.+.|...+++..
T Consensus 68 ~~~~~d~-----~---n~~~~~--~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 68 ILTDDDE-----E---NLLIAL--LARELNPDIRIIARV 96 (116)
T ss_dssp EESSSHH-----H---HHHHHH--HHHHHTTTSEEEEEE
T ss_pred EccCCHH-----H---HHHHHH--HHHHHCCCCeEEEEE
Confidence 8765321 1 111112 346778888888775
No 337
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.30 E-value=5.1 Score=34.94 Aligned_cols=98 Identities=21% Similarity=0.325 Sum_probs=59.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hccCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l-~~~~~~yD~ 178 (297)
.++.+||+.|+|+ |..+.++++..+ .+|++++.++...+.+++..... -+.....+...-+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADH-------VIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCce-------eccCCcCCHHHHHHHhcCCCCCE
Confidence 5678999999885 555666666554 78999999998888876542100 0111111211111 123467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+..... + ..++. +.+.|+++|.++...
T Consensus 205 vi~~~~~-----~-------~~~~~-~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGG-----P-------ETLAQ-ALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCC-----H-------HHHHH-HHHhcccCCEEEEEc
Confidence 9865321 0 23455 567899999998664
No 338
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.21 E-value=0.58 Score=36.82 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=59.6
Q ss_pred chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceEEEEcCCCCCCC
Q 022451 112 GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEG 189 (297)
Q Consensus 112 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~Ii~D~~~~~~~ 189 (297)
|-|..+.+++++.+ .+|++++.++.-.+.++++-... -+.....|..+.++.. ...+|+||--..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence 46888888888876 89999999999999999863211 0111112244455442 247999986542
Q ss_pred CCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+.++. ..++|+++|.+++-..
T Consensus 68 -------~~~~~~~-~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 -------SGDTLQE-AIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -------SHHHHHH-HHHHEEEEEEEEEESS
T ss_pred -------cHHHHHH-HHHHhccCCEEEEEEc
Confidence 1255666 6789999999987754
No 339
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.17 E-value=2.3 Score=36.21 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=58.2
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCC-------CCCeEEEEcchHHHH
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAEL 169 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~-------~~rv~~~~~Da~~~l 169 (297)
+|.+||+|.=+ ++..++.. ..+|+.+|.|++.++.+++++... ...+. -.+++ ...| +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~d----l 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTD----L 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESS----G
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccC----H
Confidence 58899998433 44555554 579999999999999988875421 00010 02333 2233 1
Q ss_pred hccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
... ...|+|+=..+.. .=..+++|+. +.+.+.|+-+|+.|+.
T Consensus 74 ~~~-~~adlViEai~E~-------l~~K~~~~~~-l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 74 EEA-VDADLVIEAIPED-------LELKQELFAE-LDEICPPDTILASNTS 115 (180)
T ss_dssp GGG-CTESEEEE-S-SS-------HHHHHHHHHH-HHCCS-TTSEEEE--S
T ss_pred HHH-hhhheehhhcccc-------HHHHHHHHHH-HHHHhCCCceEEecCC
Confidence 222 2578888665431 1124689999 8999999999999964
No 340
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.08 E-value=0.94 Score=39.52 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=45.6
Q ss_pred HHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 022451 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (297)
Q Consensus 96 ~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~ 171 (297)
|++..-..++||++|+|.=+. ++.+++. .++|++|+.+ ++..+++++ .+++++.++.....
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~-----------~~i~~~~~~~~~~d-- 66 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ-----------GGITWLARCFDADI-- 66 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc-----------CCEEEEeCCCCHHH--
Confidence 333445678999999986544 4555553 4689988654 444444332 36777777643221
Q ss_pred cCCCceEEEEcCCC
Q 022451 172 RKESYDVIIGDLAD 185 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~ 185 (297)
-..+|+|+....+
T Consensus 67 -l~~~~lVi~at~d 79 (205)
T TIGR01470 67 -LEGAFLVIAATDD 79 (205)
T ss_pred -hCCcEEEEECCCC
Confidence 2458999887654
No 341
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.08 E-value=1.3 Score=41.90 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|||+ |+.....+...+..+++.||-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457999999985 44444444445789999999985
No 342
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.07 E-value=1.6 Score=38.28 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=24.8
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECC
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid 135 (297)
...+|+++|+|+ |+ ++..+.+ .+..+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 467899999984 44 3455554 468899999999
No 343
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.97 E-value=1.8 Score=40.45 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=65.1
Q ss_pred CCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCC----CCCCeEEEEcchHHHHhc
Q 022451 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAF----SDPRLELVINDARAELES 171 (297)
Q Consensus 103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~----~~~rv~~~~~Da~~~l~~ 171 (297)
.++|.+||+| +.+++..++.. ..+|+++|.+++.++.+++.+... ...+ ...++++. .|..+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 4789999999 55666666654 468999999999887766543210 0000 01233433 2322222
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..-|+|+-..+... -...++|+. +.+.++|+-+|+.|+.
T Consensus 82 --~~aDlViEavpE~l-------~vK~~lf~~-l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 --ADADFIQESAPERE-------ALKLELHER-ISRAAKPDAIIASSTS 120 (321)
T ss_pred --cCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCCeEEEECCC
Confidence 45799998765321 124578888 7899999998887763
No 344
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.92 E-value=3 Score=34.46 Aligned_cols=143 Identities=19% Similarity=0.172 Sum_probs=76.1
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh----ccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----NKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~----~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+|.+||+|.++.+....-.....+|+....+++.++..++.-.. .... -.+++. ...|..+.++ ..|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~-l~~~i~-~t~dl~~a~~----~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIK-LPENIK-ATTDLEEALE----DADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSB-EETTEE-EESSHHHHHT----T-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcc-cCcccc-cccCHHHHhC----cccEEE
Confidence 58899999887754433222347999999999888776653221 1100 113454 4577666663 469999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCC---
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD--- 257 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~--- 257 (297)
+-.+. ..-+++++. ++..|+++=.++.-...- .......+. +.+++.++.-.......|++..
T Consensus 75 iavPs---------~~~~~~~~~-l~~~l~~~~~ii~~~KG~-~~~~~~~~~---~~i~~~~~~~~~~~lsGP~~A~Ei~ 140 (157)
T PF01210_consen 75 IAVPS---------QAHREVLEQ-LAPYLKKGQIIISATKGF-EPGTLLLLS---EVIEEILPIPRIAVLSGPSFAEEIA 140 (157)
T ss_dssp E-S-G---------GGHHHHHHH-HTTTSHTT-EEEETS-SE-ETTEEEEHH---HHHHHHHSSCGEEEEESS--HHHHH
T ss_pred ecccH---------HHHHHHHHH-HhhccCCCCEEEEecCCc-ccCCCccHH---HHHHHHhhhcceEEeeCccHHHHHH
Confidence 87642 123588999 799996665555432110 001222333 4444555543222345677641
Q ss_pred ---ceeEEEEecC
Q 022451 258 ---TWGWIMVSIY 267 (297)
Q Consensus 258 ---~~~~~~as~~ 267 (297)
.-.+++||+.
T Consensus 141 ~~~pt~~~~as~~ 153 (157)
T PF01210_consen 141 EGKPTAVVIASKN 153 (157)
T ss_dssp TT--EEEEEEESS
T ss_pred cCCCeEEEEEecc
Confidence 2455667654
No 345
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=89.60 E-value=0.26 Score=44.99 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+...-++++|||.|-.... .|...+.+.|+....+..|++- ....+..+|+.... .....||.+
T Consensus 43 ~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~p-~~~~s~d~~ 107 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKLP-FREESFDAA 107 (293)
T ss_pred cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC----------CCceeehhhhhcCC-CCCCccccc
Confidence 35577899999999876543 2567899999999888888752 11256778876533 346789998
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++-+.-++. ....-....++. +.++|+|||...++.
T Consensus 108 lsiavihhl---sT~~RR~~~l~e-~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 108 LSIAVIHHL---STRERRERALEE-LLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhh---hhHHHHHHHHHH-HHHHhcCCCceEEEE
Confidence 887664321 123334567888 789999999876664
No 346
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.51 E-value=2.1 Score=39.18 Aligned_cols=101 Identities=12% Similarity=0.289 Sum_probs=64.2
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~-------~rv~~~~~Da~~~ 168 (297)
++|-+||+| ++.++..++.. ..+|+.+|.+++.++.+++.+... ...+.. .|++ ...|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH-HH
Confidence 589999999 56667776664 468999999999998877654311 000000 1222 22332 22
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccC-CCCcEEEEecC
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAG 220 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGvl~~~~~ 220 (297)
+ ...|+|+-..++.. -...++|.. +.+.+ +|+.+++.|+.
T Consensus 82 ~----~~~d~ViEav~E~~-------~~K~~l~~~-l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 F----ADRQLVIEAVVEDE-------AVKTEIFAE-LDKVVTDPDAVLASNTS 122 (286)
T ss_pred h----CCCCEEEEecccCH-------HHHHHHHHH-HHHhhCCCCcEEEECCC
Confidence 2 45799988766421 124567788 77888 88999988864
No 347
>PLN02494 adenosylhomocysteinase
Probab=89.48 E-value=7.8 Score=38.22 Aligned_cols=118 Identities=8% Similarity=0.013 Sum_probs=61.2
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+++|+++|+|.=+ .....++..+ .+|+++|.||.-...|... + ..+. +..+.+ +..|+|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVV 313 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIF 313 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEE
Confidence 357999999998433 2233333343 5899999998754444332 1 1111 222333 347999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHH-HHHHhhCCceeEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVFKYVVPYS 249 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~-~~l~~~F~~v~~~~ 249 (297)
+.... . ..+... . ..+.+++||+++ |.+.++...+...+...- -.-+++.+++..|.
T Consensus 314 I~tTG------t-~~vI~~----e-~L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~ 371 (477)
T PLN02494 314 VTTTG------N-KDIIMV----D-HMRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWV 371 (477)
T ss_pred EECCC------C-ccchHH----H-HHhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEE
Confidence 87321 1 123222 2 346789998885 655432122332332220 01134567777665
No 348
>PLN02740 Alcohol dehydrogenase-like
Probab=89.40 E-value=3.9 Score=38.74 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~~~y 176 (297)
....+||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. +.. .-+.... .|..+.+.. ....+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GIT------DFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CCc------EEEecccccchHHHHHHHHhCCCC
Confidence 4578999998752 33456666666555799999999999999774 211 1111111 123333332 22369
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+--.- .+ +.++. ..+.++++ |.+++-.
T Consensus 270 dvvid~~G-----~~-------~~~~~-a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 270 DYSFECAG-----NV-------EVLRE-AFLSTHDGWGLTVLLG 300 (381)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhhhcCCCEEEEEc
Confidence 98875322 11 34455 45678886 8886643
No 349
>PRK10637 cysG siroheme synthase; Provisional
Probab=89.31 E-value=1 Score=44.18 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=47.1
Q ss_pred HHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 94 HPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 94 ~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
++|++..-..++||++|+|.=+.- ..+++. .++|++| |+++++.+++.+ .+++++..+...
T Consensus 3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~~-- 67 (457)
T PRK10637 3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFDE-- 67 (457)
T ss_pred eeceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCCh--
Confidence 356666678899999999876653 344443 4678877 777777665442 456666654321
Q ss_pred hccCCCceEEEEcCCC
Q 022451 170 ESRKESYDVIIGDLAD 185 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~ 185 (297)
..-+.+++|+....+
T Consensus 68 -~dl~~~~lv~~at~d 82 (457)
T PRK10637 68 -SLLDTCWLAIAATDD 82 (457)
T ss_pred -HHhCCCEEEEECCCC
Confidence 111347777776544
No 350
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.18 E-value=0.59 Score=44.49 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=69.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++..++++|||-|...+++... ..+.+++++.++.-+..+........ -+.+-.++..|..+-. ..+..||.+-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~-fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP-FEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC-CCccccCcEE
Confidence 34557999999999999998876 46788999999888777766543211 1233344666633221 2456799874
Q ss_pred E-cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 G-DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~-D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
. |..-. .| .....|++ +.+.++|||+++..
T Consensus 184 ~ld~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 184 FLEVVCH---AP----DLEKVYAE-IYRVLKPGGLFIVK 214 (364)
T ss_pred EEeeccc---CC----cHHHHHHH-HhcccCCCceEEeH
Confidence 4 43321 12 12478888 79999999999865
No 351
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.17 E-value=2.7 Score=38.41 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=59.6
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~ 178 (297)
..+.+||+.|+| .|..+.++++..+ .+|++++.+++..+.++++ +.. .-+.....+....+. ...+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence 456799998765 3666677777654 5799999999998888763 221 001111112222221 23457998
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++..... ...++. +.+.|+++|.++...
T Consensus 236 vid~~g~------------~~~~~~-~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVGT------------QPTFED-AQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCCC------------HHHHHH-HHHHhhcCCEEEEEC
Confidence 7743211 134566 678999999998653
No 352
>PRK13699 putative methylase; Provisional
Probab=88.97 E-value=1.4 Score=39.13 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=39.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
..++.-|||--+|+|+++.++.+. ..+..++|+++...+.|++.+.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHH
Confidence 356778999999999999998886 4678999999999999988764
No 353
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.94 E-value=2.6 Score=37.26 Aligned_cols=71 Identities=32% Similarity=0.404 Sum_probs=48.7
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCceE
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD~ 178 (297)
++++++|+| +..+++.|.+. ...|+++|.|++.++....- ..-...+++|+.+ .|++. -..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 368999998 44456666664 35899999999997763320 1236778888743 45543 367999
Q ss_pred EEEcCCC
Q 022451 179 IIGDLAD 185 (297)
Q Consensus 179 Ii~D~~~ 185 (297)
++....+
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 9887653
No 354
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.77 E-value=2.4 Score=38.75 Aligned_cols=102 Identities=21% Similarity=0.317 Sum_probs=61.7
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHH
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARA 167 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~-------~rv~~~~~Da~~ 167 (297)
-++|.+||+|. ..++..+++. ..+|+++|.+++.++.+.+.+... ...+.. .++++. .|. +
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 79 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E 79 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H
Confidence 36799999984 3455666553 358999999999988765432210 000000 123322 332 2
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+ ...|+|+...++.. -....+|+. +...++|+.+++.++.
T Consensus 80 ~~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 80 DL----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTS 120 (292)
T ss_pred Hh----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCC
Confidence 22 35799998876421 123467788 7889999988876653
No 355
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.66 E-value=4.5 Score=36.85 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=61.3
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh------ccCCCC--------CCCeEEEEcchHH
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFS--------DPRLELVINDARA 167 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~--------~~rv~~~~~Da~~ 167 (297)
++|.+||+|. +.++..+++. ..+|+++|.+++.++.+++.... ....+. ..+++ ...|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHH
Confidence 5799999984 3445555543 35899999999998887765310 000000 02333 2344333
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+ +.-|+||...+... -...++|+. +.+.++++-+++.++
T Consensus 81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~snt 120 (287)
T PRK08293 81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNS 120 (287)
T ss_pred Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECc
Confidence 33 34799998876321 123467788 688888888887765
No 356
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.60 E-value=2.6 Score=36.47 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=24.7
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~ 137 (297)
...+||++|+|+ |+-....+...+..+++.+|-|.-
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 457899999885 333333333457899999998843
No 357
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.46 E-value=2.6 Score=39.76 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=24.7
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|+|+ |+ ++..|.+ .+..+|+.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence 457899999984 33 3444444 4688999999983
No 358
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.45 E-value=2.9 Score=38.22 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=59.9
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh--------c-cCCCCC-------CCeEEEEcch
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--------N-KEAFSD-------PRLELVINDA 165 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~--------~-~~~~~~-------~rv~~~~~Da 165 (297)
++|.+||+| ++.++..++.. ..+|+++|.+++.++.+++.... . ...... .+++. ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 679999999 44556666654 35899999999999876553211 0 000000 12222 1222
Q ss_pred HHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 166 ~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+ +..|+|+...+... -...++|+. +.+.++|+.+++.++
T Consensus 81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT 121 (291)
T ss_pred -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence 212 34799998865321 123578888 788899888887654
No 359
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.40 E-value=6.6 Score=36.08 Aligned_cols=96 Identities=16% Similarity=0.271 Sum_probs=57.8
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+..+||+.|+|+ |..+.++++..+..+|++++.+++..+.++++ +... -+.....+..... .....+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~~------vi~~~~~~~~~~~-~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GADE------TVNLARDPLAAYA-ADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCCE------EEcCCchhhhhhh-ccCCCccEEE
Confidence 678899988765 55666777765555799999999988887764 2110 0000001112222 1234589987
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.-.. . ...++. +.+.|+++|.++..
T Consensus 237 d~~g-----~-------~~~~~~-~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASG-----A-------PAALAS-ALRVVRPGGTVVQV 261 (339)
T ss_pred ECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence 5432 1 134455 67899999998764
No 360
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=88.40 E-value=2.7 Score=36.38 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|||+ |+-....+...+..+++.+|-|.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 346899999984 33333333345789999999874
No 361
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=88.40 E-value=3.5 Score=37.97 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
+++.+||+.|+| .|..+.++++..+...|.+++.++...+.+++. +. +.-+.....+..+.+.. ..+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA------TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 456789887654 244556666665445788889888888877753 21 11111122233333332 235699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+-... . .+.++. +.++|+++|.++.-
T Consensus 239 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEAVG-----F-------EETFEQ-AVKVVRPGGTIANV 266 (347)
T ss_pred EEEEccC-----C-------HHHHHH-HHHHhhcCCEEEEE
Confidence 8874321 1 134555 57899999988754
No 362
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.39 E-value=0.53 Score=39.74 Aligned_cols=110 Identities=21% Similarity=0.298 Sum_probs=64.7
Q ss_pred EEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhh--hccCCCCCCCeEEE-EcchHHHHhc---cCCCceEE
Q 022451 107 FIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLV--VNKEAFSDPRLELV-INDARAELES---RKESYDVI 179 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~--~~~~~~~~~rv~~~-~~Da~~~l~~---~~~~yD~I 179 (297)
|.+|=|.-+.+..+++..+ ..+|++--.|.. -++.++|-. .+-..++...++++ --||...-.. ...+||.|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 5788888889999988654 567776655554 233333310 11011233444443 3455443222 34789999
Q ss_pred EEcCCCCCCC---CC-----ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEG---GP-----CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~---~p-----~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+-|..... .. ...|. ..||+. +++.|+++|.+.+..
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll-~~Ff~S-a~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELL-RGFFKS-ASQLLKPDGEIHVTL 125 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHH-HHHHHH-HHHhcCCCCEEEEEe
Confidence 9998754310 00 01233 579999 799999999887764
No 363
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=88.18 E-value=4.8 Score=33.84 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+|+.|||=+-.....- ...+..++...|+|.+......+.|-..+ ++.|. +..+.+ ..+||+|+
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p~------~~~~~l---~~~~d~vv 91 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEPE------ELPEEL---KGKFDVVV 91 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEECC--CCChh------hhhhhc---CCCceEEE
Confidence 45689999999765554433 13456789999999887664433121110 01111 111122 46899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+|--. ....+ ..-+. ++..+++++.+++-+
T Consensus 92 ~DPPFl~-----~ec~~-k~a~t-i~~L~k~~~kii~~T 123 (162)
T PF10237_consen 92 IDPPFLS-----EECLT-KTAET-IRLLLKPGGKIILCT 123 (162)
T ss_pred ECCCCCC-----HHHHH-HHHHH-HHHHhCccceEEEec
Confidence 9986310 11111 12244 566778888877653
No 364
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.12 E-value=2.2 Score=43.52 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=48.5
Q ss_pred CCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCce
Q 022451 103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD 177 (297)
..+|+++|+|. |.. ++.+.+. ..+++++|.|++.++.++++ ..+++.+|+.+ .++.. -++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 46899999973 333 3344432 35799999999999988762 35689999854 35432 36788
Q ss_pred EEEEcCCC
Q 022451 178 VIIGDLAD 185 (297)
Q Consensus 178 ~Ii~D~~~ 185 (297)
++++-..+
T Consensus 467 ~vvv~~~d 474 (621)
T PRK03562 467 VLINAIDD 474 (621)
T ss_pred EEEEEeCC
Confidence 88887654
No 365
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.08 E-value=0.4 Score=43.03 Aligned_cols=45 Identities=31% Similarity=0.387 Sum_probs=35.0
Q ss_pred CCeEEEEccchhHHHHHHHhcC--------CCcEEEEEECCHHHHHHHHhhhh
Q 022451 103 PKTIFIMGGGEGSTAREILRHK--------TVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~--------~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
+-+|+++|+|.|.++..+++.. ...++..||++|.+.+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 5799999999999998887642 23589999999999998888764
No 366
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.03 E-value=0.93 Score=37.80 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 92 LVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 92 l~~~~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
|..+|+...-..++||++|+|.=+. ++.+++. ..+|++| +|+..+..++. +.+++... .|-
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VI--sp~~~~~l~~l----------~~i~~~~~---~~~ 64 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVV--SPEICKEMKEL----------PYITWKQK---TFS 64 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEE--cCccCHHHHhc----------cCcEEEec---ccC
Confidence 3346777777899999999985544 4455553 4688888 45544333321 23443322 222
Q ss_pred hccCCCceEEEEcCC
Q 022451 170 ESRKESYDVIIGDLA 184 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~ 184 (297)
...-+.+|+|+....
T Consensus 65 ~~dl~~a~lViaaT~ 79 (157)
T PRK06719 65 NDDIKDAHLIYAATN 79 (157)
T ss_pred hhcCCCceEEEECCC
Confidence 222356888887644
No 367
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.84 E-value=2 Score=42.96 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=56.3
Q ss_pred CCCeEEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hc--cCC
Q 022451 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ES--RKE 174 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l--~~--~~~ 174 (297)
.+|+||+-|+| |+++.++.+. ...++|...|.|+--+..-++.+... +...++.++.+|.++.= .. .+-
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 56889988854 6766554432 35689999999999888777665432 12478899999997753 22 245
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
+.|+|++.+.
T Consensus 325 kvd~VfHAAA 334 (588)
T COG1086 325 KVDIVFHAAA 334 (588)
T ss_pred CCceEEEhhh
Confidence 7999999886
No 368
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.60 E-value=6.1 Score=35.62 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=62.4
Q ss_pred CCCCeEEEEccchhHHHH---HHHhcC--CCcEEEEEECCH--------------------------HHHHHHHhhhhhc
Q 022451 101 PNPKTIFIMGGGEGSTAR---EILRHK--TVEKVVMCDIDE--------------------------EVVEFCKSYLVVN 149 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~---~l~~~~--~~~~v~~VEid~--------------------------~vi~~a~~~f~~~ 149 (297)
.-|..|+++|+--|+.+. .+++.. +..+|.+.|.=+ ...+..+++|...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 568999999998776553 333321 345677776311 1344455555422
Q ss_pred cCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 150 ~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+ +.+++++++.|+..+.+... .+++-++-+|.-- .--|.+-++. +..+|.|||++++-.
T Consensus 153 g--l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--------YesT~~aLe~-lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 G--LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--------YESTKDALEF-LYPRLSPGGIIIFDD 212 (248)
T ss_dssp T--TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--------HHHHHHHHHH-HGGGEEEEEEEEESS
T ss_pred C--CCcccEEEECCcchhhhccCCCccEEEEEEeccc--------hHHHHHHHHH-HHhhcCCCeEEEEeC
Confidence 1 24579999999998888653 4567777777420 1125677787 799999999999874
No 369
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.55 E-value=6 Score=37.92 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCCeEEEEcc--chhHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cchHHHHhc--
Q 022451 102 NPKTIFIMGG--GEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELES-- 171 (297)
Q Consensus 102 ~~~~VL~iG~--G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~----~Da~~~l~~-- 171 (297)
...+||++|+ +-|..+.++++.. +..+|+++|.+++-++.+++.++..... ......++. .|..+.+..
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~-~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS-RGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc-cCceEEEECCCccccHHHHHHHHh
Confidence 4578999973 4566667777753 2358999999999999999864321000 000111121 233333432
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
....+|+|+..... + ..++. ..+.|+++|.+++.
T Consensus 254 ~g~g~D~vid~~g~-----~-------~~~~~-a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVPV-----P-------ELVEE-ADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCCC-----H-------HHHHH-HHHHhccCCeEEEE
Confidence 23469988865321 1 34455 56788888866544
No 370
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.53 E-value=3.4 Score=36.75 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++||| .|+...+.+...+..+++.||-|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35689999997 455555555556789999999885
No 371
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.53 E-value=3.1 Score=38.01 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-----hcc-CCCCC-------CCeEEEEcchHH
Q 022451 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----VNK-EAFSD-------PRLELVINDARA 167 (297)
Q Consensus 103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-----~~~-~~~~~-------~rv~~~~~Da~~ 167 (297)
-++|.+||+| +..++..++.. ..+|+++|.+++.++.+++.+. +.. ..... .++. ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 3679999998 55566766664 3689999999999886655432 000 00000 0111 22232 2
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+ +.-|+|+...++.. . ....+|+. +.+.++|+.+++.++.
T Consensus 80 ~~----~~aD~Vieav~e~~------~-~k~~v~~~-l~~~~~~~~il~s~tS 120 (295)
T PLN02545 80 EL----RDADFIIEAIVESE------D-LKKKLFSE-LDRICKPSAILASNTS 120 (295)
T ss_pred Hh----CCCCEEEEcCccCH------H-HHHHHHHH-HHhhCCCCcEEEECCC
Confidence 22 34799998876421 1 13467777 6788999888876653
No 372
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.50 E-value=4.3 Score=39.68 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=29.1
Q ss_pred eEEEEccchhHHHHHHH----hc---CCCcEEEEEECCHHHHHH----HHhhhh
Q 022451 105 TIFIMGGGEGSTAREIL----RH---KTVEKVVMCDIDEEVVEF----CKSYLV 147 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~----~~---~~~~~v~~VEid~~vi~~----a~~~f~ 147 (297)
+|.+||+|+. .+..+. +. .+..+|..+|||++-++. |++.+.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~ 54 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFK 54 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6889999986 554433 22 356899999999977665 454443
No 373
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.26 E-value=2.2 Score=40.68 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=25.1
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECC
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid 135 (297)
..++||++|+|+ |......+...+..+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999984 4444444444578899999998
No 374
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.11 E-value=8.9 Score=35.52 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHH-HHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
..++|+++|+|.=+ .....+...+..+|++++.+++- .++|+++ + . ..+. .|..+.+ ..+|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g--------~--~~~~~~~~~~~l----~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G--------G--NAVPLDELLELL----NEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C--------C--eEEeHHHHHHHH----hcCCE
Confidence 57899999986322 22222333346789999999874 4566653 1 1 1221 2333333 35899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||.-...+. + .+.++. +.+....+|.+++....|
T Consensus 242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence 998865432 1 233443 222333367888887655
No 375
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.10 E-value=3.4 Score=41.11 Aligned_cols=103 Identities=15% Similarity=0.297 Sum_probs=65.8
Q ss_pred CCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----c-cCCCCC-------CCeEEEEcchH
Q 022451 102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFSD-------PRLELVINDAR 166 (297)
Q Consensus 102 ~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-----~-~~~~~~-------~rv~~~~~Da~ 166 (297)
+-++|-+||+| ++.++..++.. .-.|+++|.+++.++.++++... . ...+.. .|++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 45789999999 55677777764 46899999999999987665431 0 000000 123332 2321
Q ss_pred HHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 167 ~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
-+ ..-|+||-..++.. -....+|.. +.+.++|+.+++.|+.
T Consensus 83 -~~----~~aDlViEav~E~~-------~vK~~vf~~-l~~~~~~~ailasntS 123 (507)
T PRK08268 83 -DL----ADCDLVVEAIVERL-------DVKQALFAQ-LEAIVSPDCILATNTS 123 (507)
T ss_pred -Hh----CCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 12 35899998877532 123467777 6788889988888864
No 376
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.02 E-value=5.2 Score=36.43 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=59.4
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
.++.+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.++++ +.. .-+.....|..+.+.. ....+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcE
Confidence 45689999984 45666777777654 4799999999888888873 321 0011111233333322 235699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+ |... + +.++. ..++|+++|.++..
T Consensus 214 ~vl-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNVG----G--------EFSST-VLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECCC----H--------HHHHH-HHHhhccCCEEEEE
Confidence 888 4321 1 23455 57889999998754
No 377
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.68 E-value=5.2 Score=37.43 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=60.0
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da~~~l~~-~~~~y 176 (297)
.++.+||+.|+ |.|..+.++++..+ .+|++++.+++-.+.+++.++.. .-+..... |..+.+.. ..+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFD------EAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCC------EEEECCCcccHHHHHHHHCCCCc
Confidence 45789999987 35667777887764 57899999988888776433321 01111111 33333332 23468
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+ |.. +. ..+.. +.++|+++|.+++..
T Consensus 230 D~v~-d~v-----G~-------~~~~~-~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYF-DNV-----GG-------DMLDA-ALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEE-ECC-----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 9887 432 11 23455 568999999998653
No 378
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.65 E-value=4.6 Score=32.51 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=44.7
Q ss_pred CCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D-a~~~l~~~~~~yD 177 (297)
-..++||+||+|+-+ .+..+... +..+|+++..+.+-.+...+.++ ...++++.-+ ..+.+ .++|
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~~~~----~~~D 77 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLEEAL----QEAD 77 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHCHHH----HTES
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHHHHH----hhCC
Confidence 467899999987433 34555554 67789999999765443333331 2345554433 22222 4699
Q ss_pred EEEEcCCCC
Q 022451 178 VIIGDLADP 186 (297)
Q Consensus 178 ~Ii~D~~~~ 186 (297)
+||.-.+.+
T Consensus 78 ivI~aT~~~ 86 (135)
T PF01488_consen 78 IVINATPSG 86 (135)
T ss_dssp EEEE-SSTT
T ss_pred eEEEecCCC
Confidence 999887643
No 379
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.61 E-value=10 Score=35.01 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=58.0
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc----hHHHHhc-cC
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELES-RK 173 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D----a~~~l~~-~~ 173 (297)
..++.+||+.|+|+ |..+.++++..+...|.++.-+++-.+.+++. +.. .-+.....+ ..+.... ..
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccccccchhHHHHHHHHhCC
Confidence 35678999987654 55566777766554589998888888877663 211 001111112 1111111 23
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.+|+|+-.... ...++. +.++|+++|.++..
T Consensus 233 ~~~d~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 KGPDVVIECTGA------------ESCIQT-AIYATRPGGTVVLV 264 (343)
T ss_pred CCCCEEEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 569998864321 124555 57899999998754
No 380
>PLN02827 Alcohol dehydrogenase-like
Probab=86.53 E-value=6.5 Score=37.24 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~~~y 176 (297)
..+.+||+.|+|+ |..+.++++..+...|++++.++.-.+.|++. +.. .-+.... .|..+.+.. ....+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVT------DFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEcccccchHHHHHHHHHhCCCC
Confidence 4578999998643 33445666666666799999999988888764 211 0011111 133333332 22368
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+-... .+ ..+.. ..+.|+++ |.+++..
T Consensus 265 d~vid~~G-----~~-------~~~~~-~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFECVG-----DT-------GIATT-ALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhhccCCCEEEEEC
Confidence 98874321 11 23344 45788898 9997653
No 381
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.43 E-value=6.5 Score=36.00 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=59.2
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~-~~~~y 176 (297)
.+..+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.++++ +.. .-+.... .+..+.++. ..+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GFD------VAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeccccccHHHHHHHhCCCCe
Confidence 45789999984 46667777887654 4788899998888888763 321 0011111 122333332 23469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+ |... + +.+.. +.++|+++|.++...
T Consensus 209 dvv~-d~~G----~--------~~~~~-~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYF-DNVG----G--------EFSNT-VIGQMKKFGRIAICG 237 (325)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhCcCcEEEEec
Confidence 9888 4321 1 22355 578999999998653
No 382
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=86.39 E-value=1.1 Score=38.89 Aligned_cols=116 Identities=15% Similarity=0.005 Sum_probs=62.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCC---CCCCeEEEEcchHHHHhccCCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAF---SDPRLELVINDARAELESRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~---~~~rv~~~~~Da~~~l~~~~~~ 175 (297)
..+...|.++=.|+|.+++-+... .+...|+.+-.++. ...+..+-+...... .-.+++.+-.+...+. ..+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~-~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~ 122 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL-TKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQK 122 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh-cccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCc
Confidence 466788999999999999988875 34456666544322 112211110000000 0123444444433322 3455
Q ss_pred ceEEEEcCCCCCCC-CCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.|++.....++.-+ .+...-+-..++++ +.+.|||||++.+..
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~-vf~~LKPGGv~~V~d 166 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAA-VFKALKPGGVYLVED 166 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHH-HHHhcCCCcEEEEEe
Confidence 66666544432110 00012233468888 799999999999875
No 383
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.38 E-value=2.9 Score=36.86 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+|+++|||+ |+.....+...+..+++.+|-|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 457899999984 44333333345788999997765
No 384
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.34 E-value=6.7 Score=36.31 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=54.8
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
.+..+||+.|+| .|..+.++++..+ .+|++++.+++-.+.|++. +.. . ++. .| ...+.+|+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~-Ga~-------~--vi~~~~------~~~~~~d~ 226 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL-GAA-------S--AGGAYD------TPPEPLDA 226 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh-CCc-------e--eccccc------cCcccceE
Confidence 457899999965 3444566666654 4799999999988988874 211 0 110 01 11235887
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.... .+ +.+.. ..+.|+++|.+++-.
T Consensus 227 ~i~~~~-----~~-------~~~~~-~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 227 AILFAP-----AG-------GLVPP-ALEALDRGGVLAVAG 254 (329)
T ss_pred EEECCC-----cH-------HHHHH-HHHhhCCCcEEEEEe
Confidence 654321 11 34555 568999999997653
No 385
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.30 E-value=12 Score=34.79 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=58.6
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
+.+.+|.+||+|. |.....++...+. .++..+|++++.++.-..-+.... .+. .++.+..+|-.+ + +..|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~-~----~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD-C----KDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH-h----CCCCE
Confidence 5678999999985 5544444433333 479999998876543222222111 111 346666555322 2 45899
Q ss_pred EEEcCCCCCCCCCc-cCcc--cHHHHHHHHc--ccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~-~~L~--t~ef~~~~~~--~~L~pgGvl~~~~ 219 (297)
|++-.-.|...+.. ..++ ....++.++. ...+|+|++++-+
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 99876554421110 0111 1123333111 2345899886654
No 386
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=85.99 E-value=9.7 Score=34.99 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=50.9
Q ss_pred cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEEECCHH----HHHHHHhhhhh
Q 022451 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEE----VVEFCKSYLVV 148 (297)
Q Consensus 75 dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~----vi~~a~~~f~~ 148 (297)
||.+...+.|-.-+.+.+.. .......++||+||+|+-+-+ ..+.. .+..+|+++..+++ ..+++.++ ..
T Consensus 98 ~g~l~G~NTD~~Gf~~~l~~--~~~~~~~k~vlvlGaGGaarAi~~~l~~-~g~~~i~i~nRt~~~~~ka~~la~~~-~~ 173 (288)
T PRK12749 98 DGYLRGYNTDGTGHIRAIKE--SGFDIKGKTMVLLGAGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRV-NE 173 (288)
T ss_pred CCEEEEEecCHHHHHHHHHh--cCCCcCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCccHHHHHHHHHHHh-hh
Confidence 45444444554334444432 112245689999999866543 22233 35789999999864 33333322 11
Q ss_pred ccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 149 ~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
. ....+.+..-+....+...-.++|+||.-.+
T Consensus 174 ~----~~~~~~~~~~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 174 N----TDCVVTVTDLADQQAFAEALASADILTNGTK 205 (288)
T ss_pred c----cCceEEEechhhhhhhhhhcccCCEEEECCC
Confidence 0 0112333322211112222357999988654
No 387
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=85.94 E-value=5 Score=37.52 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=60.3
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~y 176 (297)
+..++||+.|+ |-|.++.++++..+. .+.++--+++-.+.+++... |.-+.+...|..+-+++ . ++.+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCc
Confidence 45789999985 455678888887655 44444455544447776532 12233445555554543 2 3469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+|+--.. .+.+.. ..+.|+++|.++....
T Consensus 213 Dvv~D~vG-------------~~~~~~-~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 213 DVVLDTVG-------------GDTFAA-SLAALAPGGRLVSIGA 242 (326)
T ss_pred eEEEECCC-------------HHHHHH-HHHHhccCCEEEEEec
Confidence 99984321 144555 5689999999987653
No 388
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.94 E-value=5.5 Score=36.60 Aligned_cols=101 Identities=18% Similarity=0.315 Sum_probs=58.9
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC--------CCeEEEEcchHHHHhccC
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--------PRLELVINDARAELESRK 173 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~--------~rv~~~~~Da~~~l~~~~ 173 (297)
++|.+||+| ++.++..+++. ..+|+++|.+++.++.+++........... .+++ ...|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIR-MEAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceE-EeCCHHHHh----
Confidence 679999999 44556666653 358999999999988877642110000000 1122 223332222
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+..|+|+...+... -...+++.. +...++++-+++.++
T Consensus 78 ~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 SGADLVIEAVPEKL-------ELKRDVFAR-LDGLCDPDTIFATNT 115 (311)
T ss_pred ccCCEEEEeccCcH-------HHHHHHHHH-HHHhCCCCcEEEECC
Confidence 35799998865321 113467777 677777766665554
No 389
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.91 E-value=3.4 Score=40.79 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=56.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..-++|+|+.+|.|+++..+... + |.+.-.-|. .....++.- + +.-+-=..-|..+-+..-+.+||+|=
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~---~~~ntL~vI---y-dRGLIG~yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPV---SGPNTLPVI---Y-DRGLIGVYHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEeccc---CCCCcchhh---h-hcccchhccchhhccCCCCcchhhee
Confidence 45689999999999999998875 3 333222121 111111100 0 00111122244444445568899987
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+.. +... ..+ .+ ...+-+ +-|.|+|+|.+++..
T Consensus 433 A~~lfs~~~-~rC-~~--~~illE-mDRILRP~G~~iiRD 467 (506)
T PF03141_consen 433 ADGLFSLYK-DRC-EM--EDILLE-MDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhhhhhc-ccc-cH--HHHHHH-hHhhcCCCceEEEec
Confidence 6633 2221 112 11 345556 799999999999863
No 390
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=85.89 E-value=1.2 Score=41.40 Aligned_cols=106 Identities=17% Similarity=0.267 Sum_probs=61.1
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------------------cCCCCC---------
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------------------KEAFSD--------- 155 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------------------~~~~~~--------- 155 (297)
+-+||+=|||.|.++..++..... +-+=|.+--|+= +..| -++ .....+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli-~S~F-iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLI-CSSF-ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHH-HHHH-HHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 567888899999999999986533 334466555432 2221 110 000001
Q ss_pred -----------CCeEEEEcchHHHHhcc--CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 156 -----------PRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 156 -----------~rv~~~~~Da~~~l~~~--~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
....+-.||..+....+ .+.||+|+..-|-.. +... .|+++. +.+.|+|||+. +|.+
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT----a~Ni--leYi~t-I~~iLk~GGvW-iNlG 296 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT----AHNI--LEYIDT-IYKILKPGGVW-INLG 296 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec----hHHH--HHHHHH-HHHhccCCcEE-Eecc
Confidence 11223446654443332 246999988755211 1122 289999 79999999988 4654
No 391
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.85 E-value=14 Score=28.36 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=68.7
Q ss_pred eEEEEccchhHHH--HHHHhcCCCcEEE-EEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 105 TIFIMGGGEGSTA--REILRHKTVEKVV-MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~G~G~~~--~~l~~~~~~~~v~-~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+|.+||+|..+.. ..+.+..+..+++ ++|.+++-.+.+.+.++ +. ...|..+.+.. ...|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~--~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD--EDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH--TTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh--hcCCEEEE
Confidence 6899999766432 3444443455665 78999988776655432 23 66777777764 36999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
..+... -++. +.+.|+-|--+.+.- |. ..+.+..+++.+..++.-.
T Consensus 69 ~tp~~~------------h~~~-~~~~l~~g~~v~~EK-P~--~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 69 ATPPSS------------HAEI-AKKALEAGKHVLVEK-PL--ALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp ESSGGG------------HHHH-HHHHHHTTSEEEEES-SS--SSSHHHHHHHHHHHHHHTS
T ss_pred ecCCcc------------hHHH-HHHHHHcCCEEEEEc-CC--cCCHHHHHHHHHHHHHhCC
Confidence 865321 1222 455666666665553 22 3467777888887776543
No 392
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.83 E-value=3.9 Score=39.28 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=46.4
Q ss_pred CeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCceEE
Q 022451 104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVI 179 (297)
Q Consensus 104 ~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~yD~I 179 (297)
++||+||||. |.. +..|++. ...+|+++|.+++-.+.++... +++++.+.-|+.+. +..--+.+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEE
Confidence 5799999963 222 3444444 4479999999988877776542 24677776665332 22222346999
Q ss_pred EEcCCC
Q 022451 180 IGDLAD 185 (297)
Q Consensus 180 i~D~~~ 185 (297)
|.-++.
T Consensus 73 In~~p~ 78 (389)
T COG1748 73 INAAPP 78 (389)
T ss_pred EEeCCc
Confidence 987763
No 393
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.81 E-value=11 Score=34.78 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~yD 177 (297)
.++.+||+.|+| .|..+.++++..+..+|.+++.+++-.+.++++ +.. .-+.....|..+.+.. . ...+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GAT------IVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEECCCccCHHHHHHHHhCCCCCC
Confidence 456889999754 233445556655544899999999988888764 221 1111122233333332 2 23499
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-.... + ..++. +.+.|+++|.++.-.
T Consensus 244 ~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGV-----Q-------ATLDT-AIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCC-----H-------HHHHH-HHHhccCCCEEEEEc
Confidence 99864321 1 33455 568899999887653
No 394
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.80 E-value=19 Score=33.27 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=48.4
Q ss_pred cCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 99 HHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
..++.+++++||+|.=+- +..+....+..+|.+.+.+++-.+...+.+... .+.+...|..+.+ ...
T Consensus 121 a~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~a 189 (304)
T PRK07340 121 APAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-------GPTAEPLDGEAIP----EAV 189 (304)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcC
Confidence 346789999999975443 333333356689999999987765544443311 1233345655555 369
Q ss_pred eEEEEcCCC
Q 022451 177 DVIIGDLAD 185 (297)
Q Consensus 177 D~Ii~D~~~ 185 (297)
|+|+.-.+.
T Consensus 190 DiVitaT~s 198 (304)
T PRK07340 190 DLVVTATTS 198 (304)
T ss_pred CEEEEccCC
Confidence 999987664
No 395
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.76 E-value=8.4 Score=39.18 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=58.7
Q ss_pred CeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCceE
Q 022451 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD~ 178 (297)
.+|+++|+|-=+ +++.+.++ ..+++++|.||+.++.++++ ..+++.+|+.+ .+++. -++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 579999887332 23444433 35799999999999988763 25688999854 34442 367898
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++-..++. .. ...... .+.+.|+..++...
T Consensus 468 vv~~~~d~~-----~n---~~i~~~--~r~~~p~~~IiaRa 498 (601)
T PRK03659 468 IVITCNEPE-----DT---MKIVEL--CQQHFPHLHILARA 498 (601)
T ss_pred EEEEeCCHH-----HH---HHHHHH--HHHHCCCCeEEEEe
Confidence 888765432 01 122222 35677777776654
No 396
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.59 E-value=4.6 Score=36.69 Aligned_cols=87 Identities=24% Similarity=0.198 Sum_probs=53.7
Q ss_pred eEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||+| +|.++..+.+. ..+|+++|.++...+.+++.-. +.....+. +.+ ...|+|++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence 58899988 35667776664 3589999999998887765310 11111221 212 457999998
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+... ..++++. +...++++-++ +.+
T Consensus 65 vp~~~---------~~~~~~~-l~~~l~~~~ii-~d~ 90 (279)
T PRK07417 65 LPIGL---------LLPPSEQ-LIPALPPEAIV-TDV 90 (279)
T ss_pred CCHHH---------HHHHHHH-HHHhCCCCcEE-EeC
Confidence 65211 2356777 67778776544 554
No 397
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.57 E-value=5.4 Score=38.56 Aligned_cols=73 Identities=25% Similarity=0.262 Sum_probs=48.6
Q ss_pred CCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhc-cCCCc
Q 022451 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELES-RKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~-~~~~y 176 (297)
..++++++|+|.=+ +++.+.+. ...++++|.|++.++.+++.+ +.+.++.+|+. +.|.. .-+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 46889999996332 23333332 458999999999888776532 34678888984 33433 33679
Q ss_pred eEEEEcCCC
Q 022451 177 DVIIGDLAD 185 (297)
Q Consensus 177 D~Ii~D~~~ 185 (297)
|.|++-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 998876543
No 398
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.36 E-value=13 Score=34.28 Aligned_cols=109 Identities=21% Similarity=0.344 Sum_probs=55.3
Q ss_pred CeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++|.+||+|. |.. +..++......+|..+|++++..+....-+.... ......+.+...|... + ...|+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence 3799999985 333 3333333222489999999887654333222110 0111234555555322 2 46899999
Q ss_pred cCCCCCCCCCc-cCcc--cHHHHHHH---HcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPC-YKLY--TKSFYEFV---VKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~-~~L~--t~ef~~~~---~~~~L~pgGvl~~~~ 219 (297)
-...|...+.. ..|+ +.+.++.+ + +.-.|+|++++-+
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i-~~~~~~~~vivvs 117 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKI-KASGFDGIFLVAS 117 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEec
Confidence 87655421110 0111 11223321 2 3367889876654
No 399
>PRK08618 ornithine cyclodeaminase; Validated
Probab=85.25 E-value=24 Score=32.82 Aligned_cols=115 Identities=18% Similarity=0.291 Sum_probs=64.3
Q ss_pred CcEEEEEeCCcee-EEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEEC
Q 022451 58 QDIALLDTKPFGK-ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDI 134 (297)
Q Consensus 58 ~~i~V~~~~~~g~-~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEi 134 (297)
+.+.+++... |+ ...+||...+.-+.... -.+. .-++..+..+++++||+|.=+ .+..++...+..+|.+++.
T Consensus 85 g~i~l~d~~t-G~p~a~~d~~~lT~~RTaa~--sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 85 GTVILSDFET-GEVLAILDGTYLTQIRTGAL--SGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred EEEEEEeCCC-CceEEEEccchhhhhhHHHH--HHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 3566666554 44 33567766554332110 1111 123445678999999998544 2333444456789999999
Q ss_pred CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 135 d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
+++-.+...+.+... + ..++. ...|..+.+ ...|+|+.-.+.
T Consensus 161 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~----~~aDiVi~aT~s 202 (325)
T PRK08618 161 TFEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI----EEADIIVTVTNA 202 (325)
T ss_pred CHHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence 987765544433211 0 11222 246655555 358999987653
No 400
>PRK10458 DNA cytosine methylase; Provisional
Probab=85.22 E-value=3.2 Score=40.90 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=77.2
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-------------
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------------- 169 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l------------- 169 (297)
.-+++++-||.|++..-+... +...|.++|+|+...+.-+.+|.. +|....+.+|..+.-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 458999999999998877664 456788999999999998887631 133344445554431
Q ss_pred ---hccCCCceEEEEcCC-CCCC-CC----------------CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc--C
Q 022451 170 ---ESRKESYDVIIGDLA-DPIE-GG----------------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--S 226 (297)
Q Consensus 170 ---~~~~~~yD~Ii~D~~-~~~~-~~----------------p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~--~ 226 (297)
...-...|+++..++ .+++ .+ +...|+ .++++. + +.++|.-+++=|+ ++.. .
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf-~~~~ri-i-~~~kPk~fvlENV--~gl~s~~ 235 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLF-FDVARI-I-DAKRPAIFVLENV--KNLKSHD 235 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHH-HHHHHH-H-HHhCCCEEEEeCc--Hhhhccc
Confidence 111235899988876 2221 11 001122 355654 3 5678886665554 2211 2
Q ss_pred CchHHHHHHHHHHhh
Q 022451 227 HTEVFSCIYNTLRQV 241 (297)
Q Consensus 227 ~~~~~~~i~~~l~~~ 241 (297)
....+..++..|.+.
T Consensus 236 ~g~~f~~i~~~L~~l 250 (467)
T PRK10458 236 KGKTFRIIMQTLDEL 250 (467)
T ss_pred ccHHHHHHHHHHHHc
Confidence 344677888888764
No 401
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.16 E-value=11 Score=35.34 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=57.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~~~y 176 (297)
.++.+||++|+|+ |..+.++++..+..+|++++.++.-.+.++++ +.. .-+.... .+..+.+.. ....+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GAT------DFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------cEeccccccchHHHHHHHHhCCCC
Confidence 4678999998642 33445566666655899999999998888763 221 0011111 112222322 22468
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+--.. .+ ..+.. +.++|+++ |.++.-.
T Consensus 256 d~vid~~g-----~~-------~~~~~-~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFECTG-----NA-------DLMNE-ALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhcccCCCEEEEEc
Confidence 98884321 11 34455 56788875 9887653
No 402
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.95 E-value=8.9 Score=37.20 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=53.1
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+++|+++|+|.=+ ....+++..+ .+|+++|+||.-.+.|++. +. +.. +..+.+ ...|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~-G~----------~~~--~~~e~v----~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME-GY----------EVM--TMEEAV----KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc-CC----------EEc--cHHHHH----cCCCEE
Confidence 367899999999643 3444555444 4899999999988888763 21 111 112223 347988
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.-.. . ...+.....+.+++||+++.-
T Consensus 262 I~atG------~------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTG------N------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCC------C------HHHHHHHHHhcCCCCcEEEEe
Confidence 85421 1 122332135788999988543
No 403
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=84.87 E-value=14 Score=33.73 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=52.1
Q ss_pred cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC
Q 022451 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA 152 (297)
Q Consensus 75 dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~ 152 (297)
||.+...+.|..-+.+.+.. .......++|++||+|+-+- +..+.. .+..+|++++.+++-.+...+.+...
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~--~~~~~~~k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~~ka~~la~~l~~~--- 174 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRR--GLPDASLERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDPARAAALADELNAR--- 174 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHh--hccCccCCEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHHHHhh---
Confidence 45554455554434444421 11224568999999986443 333333 45678999999976555443333211
Q ss_pred CCCCCeEEEE-cchHHHHhccCCCceEEEEcCC
Q 022451 153 FSDPRLELVI-NDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 153 ~~~~rv~~~~-~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
.+.+.+.. .+..+. -..+|+||.-.+
T Consensus 175 --~~~~~~~~~~~~~~~----~~~aDiVInaTp 201 (284)
T PRK12549 175 --FPAARATAGSDLAAA----LAAADGLVHATP 201 (284)
T ss_pred --CCCeEEEeccchHhh----hCCCCEEEECCc
Confidence 12233332 221111 245899988765
No 404
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=84.81 E-value=8.9 Score=37.32 Aligned_cols=42 Identities=33% Similarity=0.615 Sum_probs=29.3
Q ss_pred eEEEEccchhHHHHHHHh----c---CCCcEEEEEECCHHHHHH----HHhhhh
Q 022451 105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEF----CKSYLV 147 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~----a~~~f~ 147 (297)
+|.+||+|+. .+..+.+ . .+..+|..+|+|++-++. |++.+.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~ 54 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVE 54 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 6889999986 5544432 1 356899999999976665 555444
No 405
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=84.41 E-value=7.9 Score=38.41 Aligned_cols=113 Identities=12% Similarity=0.210 Sum_probs=68.1
Q ss_pred CCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhccCCCce
Q 022451 103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~~~~~~yD 177 (297)
...|.+.-||+|++..+..+. ....++++-|.++.+...|+.++.+... ..+...+..+|... +-.....+||
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCC
Confidence 358999999999988665432 1235799999999999999988544321 11223333344321 1001235699
Q ss_pred EEEEcCCCC--CCCC--Cc---------------cCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADP--IEGG--PC---------------YKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~--~~~~--p~---------------~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.|+.+++.. |..+ |. ..--...|+.. +..+|++||...+-
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h-~~~~L~~gG~~aiI 354 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLH-ALYVLGQEGTAAIV 354 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHH-HHHhcCCCCeEEEE
Confidence 999998632 2111 10 00124457777 67899999965443
No 406
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.37 E-value=8.8 Score=35.39 Aligned_cols=86 Identities=15% Similarity=0.274 Sum_probs=50.0
Q ss_pred CCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhccCCCceEE
Q 022451 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~l~~~~~~yD~I 179 (297)
.+++|++||.|.-+. +...++..+ .+|++++.++...+.++.. + .+.+ ..+..+.+ ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l----~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV----GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh----CCCCEE
Confidence 579999999985332 333333343 5999999998876665542 1 1111 12222332 469999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
|.-.+. .+.+.+ +.+.++++++++
T Consensus 215 I~t~p~--------~~i~~~-----~l~~~~~g~vII 238 (296)
T PRK08306 215 FNTIPA--------LVLTKE-----VLSKMPPEALII 238 (296)
T ss_pred EECCCh--------hhhhHH-----HHHcCCCCcEEE
Confidence 986431 223333 345677877665
No 407
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=84.33 E-value=0.66 Score=43.60 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=55.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHH-------HhhhhhccCCCCCCCeEEEEcchHHHHhcc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC-------KSYLVVNKEAFSDPRLELVINDARAELESR 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a-------~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~ 172 (297)
..+++=|+|=-.|||++...++.. .+-|.+.|||-.+++.. +.+|...+. .+-=+-+..+|.-.-.-.+
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~--~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGS--SSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCC--cchhhheeeecccCcchhh
Confidence 356777888888889988877764 46899999999999843 334443321 1122567777754322223
Q ss_pred CCCceEEEEcCCC
Q 022451 173 KESYDVIIGDLAD 185 (297)
Q Consensus 173 ~~~yD~Ii~D~~~ 185 (297)
...||.|++|++-
T Consensus 282 n~~fDaIvcDPPY 294 (421)
T KOG2671|consen 282 NLKFDAIVCDPPY 294 (421)
T ss_pred cceeeEEEeCCCc
Confidence 5789999999973
No 408
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=84.07 E-value=13 Score=35.99 Aligned_cols=101 Identities=16% Similarity=0.258 Sum_probs=54.2
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+++|+++|+|.=+ .....+...+..+|++++.++.-.+ +++++ + ..+ +-..|..+.+ ..+|+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-g--------~~~-~~~~~~~~~l----~~aDv 245 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-G--------GEA-IPLDELPEAL----AEADI 245 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-C--------CcE-eeHHHHHHHh----ccCCE
Confidence 456899999987433 2233333345568999999986654 44442 1 111 1113333333 35899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||.-...+ ..+.+.+.++. ..+.=+.++.+++....|
T Consensus 246 VI~aT~s~------~~~i~~~~l~~-~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 246 VISSTGAP------HPIIGKGMVER-ALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEECCCCC------CcEEcHHHHHH-HHhhccCCCeEEEEeCCC
Confidence 99876432 24456666655 321111244666665444
No 409
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.06 E-value=1.9 Score=40.80 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=39.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc----C----CCcEEEEEECCHHHHHHHHhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH----K----TVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~----~----~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
.|.+..+++||.|.|.++.-+++. . ...++..||++|+..+.=|+.+.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 466789999999999998777653 2 36799999999999988777664
No 410
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=84.02 E-value=13 Score=34.96 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=57.4
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~~Da~~~l~~-~~~~y 176 (297)
....+||+.|+|+ |..+.++++..+..+|++++.+++-.+.++++ +.. .-+... ..+..+.+.. ....+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GAT------DCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCC------eEEcccccchhHHHHHHHHhCCCC
Confidence 4578999998753 34556667766555899999999999998764 211 001111 0122222322 22368
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+--.. .+ ..+.. +.+.|+++ |.++.-.
T Consensus 257 d~vid~~G-----~~-------~~~~~-~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 257 DYSFECIG-----NV-------NVMRA-ALECCHKGWGESIIIG 287 (368)
T ss_pred CEEEECCC-----CH-------HHHHH-HHHHhhcCCCeEEEEe
Confidence 98874322 11 23344 45788886 9887553
No 411
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.74 E-value=5.6 Score=39.96 Aligned_cols=93 Identities=11% Similarity=0.130 Sum_probs=57.9
Q ss_pred CeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--Hhcc-CCCceE
Q 022451 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESR-KESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~-~~~yD~ 178 (297)
.+++++|+|.=+ +++.+.+. ..+++++|.|++.++.+++. ..+++.+|+.+. +++. -++.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 678999987432 33444433 35799999999998888752 367889998543 4332 367998
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++....+.. . . ...-. +.+.++|+-.++...
T Consensus 485 viv~~~~~~--~---~----~~iv~-~~~~~~~~~~iiar~ 515 (558)
T PRK10669 485 LLLTIPNGY--E---A----GEIVA-SAREKRPDIEIIARA 515 (558)
T ss_pred EEEEcCChH--H---H----HHHHH-HHHHHCCCCeEEEEE
Confidence 887765422 0 0 11222 234557777777654
No 412
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=83.72 E-value=16 Score=34.29 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=57.9
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc--chHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~--Da~~~l~~-~~~~y 176 (297)
.++.+||++|+| .|..+.++++..+..+|++++.+++-.+.+++. +.. .-+..... |..+.+.. ....+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GAT------DCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------EEEcccccchHHHHHHHHHhCCCC
Confidence 567899999864 233456666666555799999999999888763 211 00111111 23333322 22369
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+--.. .+ ..++. +.+.|+++ |.++.-.
T Consensus 258 d~vid~~g-----~~-------~~~~~-a~~~l~~~~G~~v~~g 288 (368)
T cd08300 258 DYTFECIG-----NV-------KVMRA-ALEACHKGWGTSVIIG 288 (368)
T ss_pred cEEEECCC-----Ch-------HHHHH-HHHhhccCCCeEEEEc
Confidence 98874321 11 34455 56788887 8887653
No 413
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=83.68 E-value=2.3 Score=39.24 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=48.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----cCCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-----~~~~ 175 (297)
..+.+|..||.|+..+...+.+. ..+|++||+||.-+.+-+-.+..... -|+ ++|...|+.. +..-
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ahiAln~lklaA~R~---Lp~----h~dl~r~~a~a~t~~n~~~ 132 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPAHIALNRLKLAAFRH---LPS----HEDLVRFFALAGTRRNSQA 132 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHHHHHHHHHHHHHHhh---ccc----chhhHHHhhhhcccccchh
Confidence 45678999999987777777765 36899999999999887765542210 122 2366666532 2345
Q ss_pred ceEEEEc
Q 022451 176 YDVIIGD 182 (297)
Q Consensus 176 yD~Ii~D 182 (297)
||.-+..
T Consensus 133 yD~flae 139 (414)
T COG5379 133 YDRFLAE 139 (414)
T ss_pred hhccccc
Confidence 7766543
No 414
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=83.62 E-value=3.7 Score=39.89 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=43.3
Q ss_pred eEEEEccchhHHHH-H---HHh--cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhccCCCce
Q 022451 105 TIFIMGGGEGSTAR-E---ILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD 177 (297)
Q Consensus 105 ~VL~iG~G~G~~~~-~---l~~--~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~l~~~~~~yD 177 (297)
+|.+||+|+-+.+. . ++. .....+|..+|+|++.++...+......... ....++. ..|..+.+. ..|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-~~~~~I~~ttD~~eal~----~AD 76 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-GAPLKIEATTDRREALD----GAD 76 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhc----CCC
Confidence 68899999844332 2 331 1234589999999988877655432110000 1223443 556544443 468
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+|+.-..
T Consensus 77 ~Vi~ai~ 83 (423)
T cd05297 77 FVINTIQ 83 (423)
T ss_pred EEEEeeE
Confidence 8888775
No 415
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.56 E-value=11 Score=34.78 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=59.6
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~-~~~~y 176 (297)
.++.+||+.|+ |-|..+.++++..+ .+|+++..+++-.+.+++.++.. .-+.... .|..+.+.. ....+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGFD------DAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCc------eeEEcCCcccHHHHHHHhCCCCc
Confidence 56789999985 45666777777664 47888888888888887744321 0111111 133333322 23568
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+ |... + ..+.. +.++|+++|.++..
T Consensus 223 d~v~-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNVG----G--------KMLDA-VLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhccCcEEEEe
Confidence 9887 4321 1 23445 57899999999864
No 416
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.52 E-value=7.6 Score=35.87 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=52.0
Q ss_pred CCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...+|++||+| ++.++..+.+. ..+|+.+..++. +..++. +.... .+.+..+..-.+..... ....+|+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~-~~~~~D~ 75 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDS---VHGDFHLPPVQAYRSAE-DMPPCDW 75 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEe---CCCCeeecCceEEcchh-hcCCCCE
Confidence 34589999988 34455555553 357888888762 322222 11110 01111111000001111 1357999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
|++-.... . +.+.++. ++..+++++.++.
T Consensus 76 vilavK~~-------~--~~~~~~~-l~~~~~~~~~iv~ 104 (313)
T PRK06249 76 VLVGLKTT-------A--NALLAPL-IPQVAAPDAKVLL 104 (313)
T ss_pred EEEEecCC-------C--hHhHHHH-HhhhcCCCCEEEE
Confidence 99876422 1 2467777 7888999997654
No 417
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=83.50 E-value=15 Score=33.55 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=57.1
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
..+.+||+.|+| .|..+.++++.....+|+++.-+++-.+.++++ +.. .-+.... .+..+.+....+.+|+
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~~------~v~~~~~~~~~~~~v~~~~~~~d~ 233 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GAD------LTINSKRVEDVAKIIQEKTGGAHA 233 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CCc------EEecccccccHHHHHHHhcCCCcE
Confidence 567899999853 233445555542245899999999999988653 321 0011111 2222334332235887
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++.+... .+.+.. +.++|+++|.++.-
T Consensus 234 vi~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 260 (338)
T PRK09422 234 AVVTAVA------------KAAFNQ-AVDAVRAGGRVVAV 260 (338)
T ss_pred EEEeCCC------------HHHHHH-HHHhccCCCEEEEE
Confidence 7766431 144556 57899999998754
No 418
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=83.41 E-value=43 Score=32.01 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=69.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-.+|.|+++|.|.-+=+.......-.++|.+.|+||.-.--|.- +-.++...+ .....-|+++
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~M-----------dGf~V~~m~------~Aa~~gDifi 269 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAM-----------DGFRVMTME------EAAKTGDIFV 269 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhh-----------cCcEEEEhH------HhhhcCCEEE
Confidence 46889999998865543333322336799999999964322221 123333322 1123347666
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS 249 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (297)
.-. +. ....+.|-+.. ++ +|.++.|.++.++-.+...++......+++-|.|.-|.
T Consensus 270 T~T------Gn-kdVi~~eh~~~-Mk-----DgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~ 325 (420)
T COG0499 270 TAT------GN-KDVIRKEHFEK-MK-----DGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYE 325 (420)
T ss_pred Ecc------CC-cCccCHHHHHh-cc-----CCeEEecccccceeccHHHHHHhhhhHhccccCceEEE
Confidence 543 22 24456666555 43 67788898865444455556666566777788887774
No 419
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.31 E-value=23 Score=32.74 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=55.6
Q ss_pred eEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+|.+||+|. |.. +..++......+|..+|++++..+ .+...-... .+. +...+..+|-.. + ...|+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i~~~d~~~-l----~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRIYAGDYAD-C----KGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEEeeCCHHH-h----CCCCEEEE
Confidence 589999985 333 343444332468999999987665 232221111 111 224555555322 2 45899999
Q ss_pred cCCCCCCCCCcc-Cc--ccHHHHHHHHc--ccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCY-KL--YTKSFYEFVVK--PRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~-~L--~t~ef~~~~~~--~~L~pgGvl~~~~ 219 (297)
-+..+...+... .| .+.+.++.++. +...|+|++++-+
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 887654221100 01 12223333111 3366889887764
No 420
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=83.26 E-value=0.29 Score=45.02 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=59.3
Q ss_pred CCCCeEEEEccchhHHHH-HHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAR-EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~-~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.....|.|+=+|-|+++. .+.. .+...|.++|.||..++..|+....+. ...|..++.+|-|.- ......|-|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R~~--~~~~~AdrV 266 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNRNP--KPRLRADRV 266 (351)
T ss_pred cccchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhcccccc--Cccccchhe
Confidence 345778899999999988 5454 568899999999999999999877653 245667777876542 235678888
Q ss_pred EEcCC
Q 022451 180 IGDLA 184 (297)
Q Consensus 180 i~D~~ 184 (297)
.+.+-
T Consensus 267 nLGLl 271 (351)
T KOG1227|consen 267 NLGLL 271 (351)
T ss_pred eeccc
Confidence 88764
No 421
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=83.20 E-value=9.5 Score=35.75 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=56.6
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc--chHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~--Da~~~l~~-~~~~y 176 (297)
.++.+||+.|+|. |..+.++++..+...|++++.++.-.+.++++ +.. .-+..... |..+.+.. ..+.+
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GAT------ECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCC------eecccccccchHHHHHHHHhCCCC
Confidence 4578999987642 33345556666656789999888888888653 321 11111112 33333322 23569
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCC-CCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN-PEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~-pgGvl~~~ 218 (297)
|+|+ |... . ...+.. +.+.|+ ++|.++..
T Consensus 255 d~vi-d~~g----~-------~~~~~~-~~~~l~~~~G~~v~~ 284 (365)
T cd05279 255 DYAF-EVIG----S-------ADTLKQ-ALDATRLGGGTSVVV 284 (365)
T ss_pred cEEE-ECCC----C-------HHHHHH-HHHHhccCCCEEEEE
Confidence 9888 4321 1 133444 567888 99998764
No 422
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.04 E-value=15 Score=34.17 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=57.5
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
...+|.+||+|. |.....++...+..++..+|++++..+ +... +.... .......++.. +|-. -+ ..-|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~~-~~~~~~~~i~~~~d~~-~l----~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHFS-TLVGSNINILGTNNYE-DI----KDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhhc-cccCCCeEEEeCCCHH-Hh----CCCCE
Confidence 346899999987 666555555444467999999987644 2211 11111 11122345553 4532 33 34699
Q ss_pred EEEcCCCCCCCCC-ccC------cccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGP-CYK------LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~------L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+...-.+...+. ... -.-+++.+. +.+ ..|++++++-+
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~~-~~p~a~vivvs 122 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAES-VKK-YCPNAFVICVT 122 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEEec
Confidence 9987643321110 000 112345555 444 46899766544
No 423
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.59 E-value=4.3 Score=36.32 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=51.0
Q ss_pred CCCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHH---hccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAEL---ESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da~~~l---~~~~~~y 176 (297)
+.-++||||.|.-++==-+. +.+ .-+.++-|+|+..++.|+.....+.. + ...++++.+ |-...+ ....++|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~-l-~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPG-L-ERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcc-h-hhheeEEeccCcccccccccccccee
Confidence 44578999998776522121 123 35899999999999999998764411 1 123444332 222222 2235899
Q ss_pred eEEEEcCCCC
Q 022451 177 DVIIGDLADP 186 (297)
Q Consensus 177 D~Ii~D~~~~ 186 (297)
|+.+++++.+
T Consensus 155 d~tlCNPPFh 164 (292)
T COG3129 155 DATLCNPPFH 164 (292)
T ss_pred eeEecCCCcc
Confidence 9999998743
No 424
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=82.58 E-value=17 Score=33.96 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=58.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
...++||+.|+|+ |..+.++++..+...+++++.++.-.+.++++ +.. .-+.....+..+.+.. ....+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~------~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT------HVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------EEecCCCcCHHHHHHHHhCCCCcE
Confidence 4568899997643 44556666666666799999999888887763 210 0000001122222221 2456998
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+--... + ..+.. +.+.|+++|.++...
T Consensus 258 vld~~g~-----~-------~~~~~-~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV-----P-------AVIEQ-AVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC-----c-------HHHHH-HHHHhccCCEEEEeC
Confidence 8854321 1 23445 578899999987653
No 425
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=82.52 E-value=4.5 Score=37.36 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=22.9
Q ss_pred eEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHH
Q 022451 105 TIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEV 138 (297)
Q Consensus 105 ~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~v 138 (297)
+||++|+| .|+-....+...+..+++.+|.|-.-
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve 35 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTID 35 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 58999997 33333333334578999999987543
No 426
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=82.49 E-value=4.8 Score=37.15 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=53.1
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--hhhccCCCCCCCeEEE--EcchHHHHhccCCCce
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY--LVVNKEAFSDPRLELV--INDARAELESRKESYD 177 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~--f~~~~~~~~~~rv~~~--~~Da~~~l~~~~~~yD 177 (297)
.+|+++|+| +|.++..|.+. ...|+.++-.++-++..++. +.... ......+. ..+ ....+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~-----~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAET-----ADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCC-----cccccccC
Confidence 369999988 34456666553 35799999987555555432 21110 01111111 111 11235799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+|++-.- ...+.+.++. ++..+.++..++
T Consensus 73 ~viv~vK---------~~~~~~al~~-l~~~l~~~t~vv 101 (305)
T PRK05708 73 RLLLACK---------AYDAEPAVAS-LAHRLAPGAELL 101 (305)
T ss_pred EEEEECC---------HHhHHHHHHH-HHhhCCCCCEEE
Confidence 9998742 1224577788 789999998554
No 427
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=82.49 E-value=4.4 Score=43.75 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=31.1
Q ss_pred ChhhHHHHHHHHHH--hcCCCCCeEEEEccchh-H-HHHHHHhcCCCcEEEEEECCH
Q 022451 84 DEFIYHESLVHPAL--LHHPNPKTIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 84 d~~~y~e~l~~~~l--~~~~~~~~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~ 136 (297)
|+..|.+.+..... ...-...+||++|||+= + ++..|. ..+..+|+.+|-+.
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~-laGVg~iti~D~d~ 58 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLV-LAGVKSVTLHDTEK 58 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCe
Confidence 45567766532221 11224578999999742 2 233333 35789999999875
No 428
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.39 E-value=11 Score=35.49 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEE-EcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~l~~~~~~yD 177 (297)
...++||+.|+| -|..+.++++..+ .+|++++.+++-. +.++++ +.. .++ ..+. +.+......+|
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~~~~~~~~~~~~~-Ga~---------~vi~~~~~-~~~~~~~~~~D 249 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISSSSNKEDEAINRL-GAD---------SFLVSTDP-EKMKAAIGTMD 249 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCcchhhhHHHhC-CCc---------EEEcCCCH-HHHHhhcCCCC
Confidence 356789998865 3344566666654 4688887776543 344442 211 011 0111 11222123589
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+ |... .+ ..++. +.+.|+++|.++.-
T Consensus 250 ~vi-d~~g----~~-------~~~~~-~~~~l~~~G~iv~v 277 (360)
T PLN02586 250 YII-DTVS----AV-------HALGP-LLGLLKVNGKLITL 277 (360)
T ss_pred EEE-ECCC----CH-------HHHHH-HHHHhcCCcEEEEe
Confidence 888 4331 11 33455 56899999998754
No 429
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=82.34 E-value=14 Score=35.39 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=59.6
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhc--cCC
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES--RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~--~~~ 174 (297)
...++||+.|+| .|..+.++++..+...|.++|.++.-.++|++. +.. .+.. .+..+.+.. ...
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga~---------~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GCE---------TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CCe---------EEecCCcccHHHHHHHHcCCC
Confidence 457889997665 233445666666666677789999889999874 211 1111 123233322 224
Q ss_pred CceEEEEcCCCCCCCCCcc-Cccc-HHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCY-KLYT-KSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~-~L~t-~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|+|+--.-.+....+.. .... ...++. +.+.++++|.+++-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNS-LMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHH-HHHHhhCCCEEEEee
Confidence 6898875443221000000 0001 124566 568999999998653
No 430
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=82.31 E-value=11 Score=35.31 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~~~y 176 (297)
.+..+||+.|+| .|..+.++++..+..+|++++.+++-.+.++++ +.. .-+.... .+..+.++. ....+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GVT------EFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------eEEcccccchhHHHHHHHHhCCCC
Confidence 467899999864 233445666666555899999999999988763 321 0011111 112222322 23368
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+++--.. . ...+.. +.+.++++ |.+++..
T Consensus 259 d~vid~~G-----~-------~~~~~~-~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSFECTG-----N-------IDAMIS-AFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEEECCC-----C-------hHHHHH-HHHHhhcCCCEEEEEC
Confidence 97764321 1 134444 46788896 9887654
No 431
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=82.20 E-value=16 Score=32.28 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=50.6
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--E---cchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHH
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--I---NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~---~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~ 202 (297)
+|..||=||.|.++-++|.... |..+++ . +.|...+... +-|+|++|.+-|...+ -+++.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~------~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~G-------i~lL~ 66 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQI------PGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNG-------IELLP 66 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhC------CCceEEEeeccHHHHHHHHHhh--CCCEEEEeeccCCCcc-------HHHHH
Confidence 5789999999999999998643 333332 2 2344445432 3499999998665222 27788
Q ss_pred HHHcccCCCCcEEEEec
Q 022451 203 FVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 203 ~~~~~~L~pgGvl~~~~ 219 (297)
. ++..=-+..++++..
T Consensus 67 ~-ir~~~~~~DVI~iTA 82 (224)
T COG4565 67 E-LRSQHYPVDVIVITA 82 (224)
T ss_pred H-HHhcCCCCCEEEEec
Confidence 7 666666677777764
No 432
>PRK08328 hypothetical protein; Provisional
Probab=82.09 E-value=2 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|||+ |+.....+...+..+++.||-|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467899999984 44444444445789999998664
No 433
>PRK08507 prephenate dehydrogenase; Validated
Probab=81.96 E-value=10 Score=34.30 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=52.2
Q ss_pred eEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||+|. +.++..+.+.....+|+++|.+++..+.+++. +.. . ...+..+ + .+ .|+||+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~---------~-~~~~~~~-~---~~-aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV---------D-EIVSFEE-L---KK-CDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC---------c-ccCCHHH-H---hc-CCEEEEe
Confidence 588999884 55666666543234799999999887776542 110 0 0122222 2 12 7999998
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+... ..+.+.. +.. ++++.++ +..
T Consensus 66 vp~~~---------~~~~~~~-l~~-l~~~~iv-~d~ 90 (275)
T PRK08507 66 IPVDA---------IIEILPK-LLD-IKENTTI-IDL 90 (275)
T ss_pred CcHHH---------HHHHHHH-Hhc-cCCCCEE-EEC
Confidence 75321 2356667 667 8877655 444
No 434
>PLN02256 arogenate dehydrogenase
Probab=81.95 E-value=39 Score=31.24 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
....+|.+||+| +|.++..+.+. ..+|++++.++. .+.++++ + +.. ..|..+.+. ...|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~-~~~a~~~-g----------v~~-~~~~~e~~~---~~aDv 95 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDY-SDIAAEL-G----------VSF-FRDPDDFCE---EHPDV 95 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccH-HHHHHHc-C----------Cee-eCCHHHHhh---CCCCE
Confidence 456789999988 44556665553 257999999874 2444431 1 121 344444332 34799
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHH-cccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY 244 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~ 244 (297)
|++..+.. ...+.++. + ...++++. +++...+ .. ....+.+++.++.
T Consensus 96 Vilavp~~---------~~~~vl~~-l~~~~l~~~~-iviDv~S-----vK---~~~~~~~~~~l~~ 143 (304)
T PLN02256 96 VLLCTSIL---------STEAVLRS-LPLQRLKRST-LFVDVLS-----VK---EFPKNLLLQVLPE 143 (304)
T ss_pred EEEecCHH---------HHHHHHHh-hhhhccCCCC-EEEecCC-----ch---HHHHHHHHHhCCC
Confidence 99976421 13466666 5 45677776 4455432 11 2445566666654
No 435
>PRK06223 malate dehydrogenase; Reviewed
Probab=81.81 E-value=20 Score=32.84 Aligned_cols=109 Identities=24% Similarity=0.267 Sum_probs=54.7
Q ss_pred CeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+|.+||+|. |......+...+..+|..+|++++..+....-+.... .......++.. .|- +-+ ..-|+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~-~~~----~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-PVEGFDTKITGTNDY-EDI----AGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-hhcCCCcEEEeCCCH-HHH----CCCCEEEE
Confidence 4799999987 5554444443332289999999887543211111110 00111234443 442 222 34799998
Q ss_pred cCCCCCCCCCc-cC------cccHHHHHHHHcccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPC-YK------LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~-~~------L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
....|...+.. .. -.-+++++. +.+. .|++++++.++
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~-i~~~-~~~~~viv~tN 120 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEG-IKKY-APDAIVIVVTN 120 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence 76544421110 00 012344454 4444 47887776654
No 436
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=81.75 E-value=14 Score=33.69 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=35.8
Q ss_pred cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHH
Q 022451 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVV 139 (297)
Q Consensus 75 dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi 139 (297)
||.+...+.|-.-+.+.+...........++||+||+|+-+- +..+.+ .+..+|+++..+++-.
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-~G~~~i~I~nRt~~ka 162 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-LGVTDITVINRNPDKL 162 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-cCCCeEEEEeCCHHHH
Confidence 454444455544444444321100113568999999875543 233333 4567899999986543
No 437
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.73 E-value=11 Score=32.90 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=45.9
Q ss_pred CCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh---
Q 022451 102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~--- 170 (297)
.+++||+.|++ |.++..+++. ....+|+++..+++-++.....+... ..+++++..|..+ .+.
T Consensus 8 ~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46889999854 4444333321 12358999999988766555443221 2457777777532 121
Q ss_pred ccCCCceEEEEcCC
Q 022451 171 SRKESYDVIIGDLA 184 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~ 184 (297)
...++.|+|+....
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 12356899998775
No 438
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=81.71 E-value=3.7 Score=38.36 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=44.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcC--CCcEEEEEECCHHHHHHH-HhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFC-KSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a-~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~y 176 (297)
..++||+.| |+|.++..+.++. ...+|+++|..+.-.... ........ .....+++++.+|.++. +...-+.+
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVS-EEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccc-cccCCceEEEEccCCCHHHHHHHhhCC
Confidence 457899999 5677665555431 235899998754321111 11111000 00124688999998642 22222458
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|+||+-+.
T Consensus 92 d~ViHlAa 99 (348)
T PRK15181 92 DYVLHQAA 99 (348)
T ss_pred CEEEECcc
Confidence 99998875
No 439
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=81.30 E-value=3.9 Score=36.45 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=40.1
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..-+++|++|+- +|......+... .+|++|||.|.+.++.. +++++. .++......||+|
T Consensus 40 ~~~k~~lI~G~YltG~~iA~~L~~~--~eV~lvDI~p~lk~ll~------------~~i~F~-----~~~~~~~~~~DlI 100 (252)
T PF06690_consen 40 EEFKQALIFGAYLTGNFIASALSKK--CEVTLVDIHPHLKELLN------------ENIKFM-----EFRNGLEGNPDLI 100 (252)
T ss_pred cccceEEEEEEEeehHHHHHHhccC--ceEEEEeCcHHHHHHhc------------CCCcee-----eccCCCCCCCCEE
Confidence 345699999974 555544444432 38999999999977753 445544 2233334568877
Q ss_pred EEcCC
Q 022451 180 IGDLA 184 (297)
Q Consensus 180 i~D~~ 184 (297)
+ |.+
T Consensus 101 I-D~T 104 (252)
T PF06690_consen 101 I-DTT 104 (252)
T ss_pred E-ECC
Confidence 6 444
No 440
>PRK10083 putative oxidoreductase; Provisional
Probab=81.29 E-value=13 Score=34.07 Aligned_cols=98 Identities=22% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+.+||+.|+|+ |..+.++++. .+...+.+++.+++-.++++++- .. .-+.....+..+.+......+|+
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G-a~------~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG-AD------WVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC-Cc------EEecCccccHHHHHhcCCCCCCE
Confidence 4567999998542 2233444453 35667899999999999888752 11 00111112333334322223455
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+ |... .+ .-+.. ..+.|+++|.++.-
T Consensus 232 vi-d~~g----~~-------~~~~~-~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 II-DAAC----HP-------SILEE-AVTLASPAARIVLM 258 (339)
T ss_pred EE-ECCC----CH-------HHHHH-HHHHhhcCCEEEEE
Confidence 55 4321 11 23455 56899999998764
No 441
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=81.28 E-value=17 Score=33.39 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=56.2
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.+..+||+.|+| .|..+.++++..+..+|++++.++.-.+.++++ +.. .-+.....+....+.. ....+|
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GAT------HTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCC------ceeccccccHHHHHHHHhCCCCCC
Confidence 456889997653 222345556655546789999999888887764 211 1112222233222222 234699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+- ... . ...++. +.+.|+++|.++..
T Consensus 238 ~vld-~~g----~-------~~~~~~-~~~~l~~~g~~v~~ 265 (345)
T cd08286 238 VVIE-AVG----I-------PATFEL-CQELVAPGGHIANV 265 (345)
T ss_pred EEEE-CCC----C-------HHHHHH-HHHhccCCcEEEEe
Confidence 8883 321 1 133455 56899999998754
No 442
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.22 E-value=5.8 Score=34.45 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEEC
Q 022451 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDI 134 (297)
Q Consensus 96 ~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEi 134 (297)
|++..-..++||+||+|.=+. +..+++. ..+|++|+.
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~ 41 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISP 41 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcC
Confidence 455556789999999985443 3455554 368998854
No 443
>PLN02427 UDP-apiose/xylose synthase
Probab=81.15 E-value=6.4 Score=37.25 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=45.1
Q ss_pred CCCeEEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~y 176 (297)
.+++||+.| |+|.++..+.+. .+..+|.+++.++.-.... ...... ...++++++.+|..+. +...-+.+
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l---~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHL---LEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhh---hccccc-cCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 467899998 567766655542 1235799998765432211 111000 0125799999997543 32222358
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|+||+-+.
T Consensus 88 d~ViHlAa 95 (386)
T PLN02427 88 DLTINLAA 95 (386)
T ss_pred CEEEEccc
Confidence 99998765
No 444
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.09 E-value=32 Score=32.01 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
+..+|.+||+|. |. ++..++...-..++..+|++++..+-...-+.... .+... .+++. +|..+ + ...|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~-~~v~~~~dy~~-~----~~adi 74 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS-AFLKN-PKIEADKDYSV-T----ANSKV 74 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh-ccCCC-CEEEECCCHHH-h----CCCCE
Confidence 345899999873 22 23333333334689999998865433222122111 11112 25554 66433 3 34799
Q ss_pred EEEcCCCCCCCCC-ccCcc------cHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGP-CYKLY------TKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~L~------t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++.+-.+...+. ...|+ -+++.+. +++. +|+|++++-++
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~-i~~~-~p~~~vivvsN 121 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPK-LVKY-SPNAILLVVSN 121 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHh-CCCcEEEEccC
Confidence 9986654432111 00111 1223334 3444 89998876653
No 445
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=81.04 E-value=21 Score=34.51 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=54.4
Q ss_pred CCCCeEEEEccchhH-H-HHHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGS-T-AREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~-~~~l~~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++|+++|+|.=+ . +..+.. .+..+|++++.++.-.+ +++++ +. . .+-..|..+.+ ..+|
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~-~G~~~V~v~~rs~~ra~~la~~~-g~--------~-~i~~~~l~~~l----~~aD 242 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLR-KGVGKILIANRTYERAEDLAKEL-GG--------E-AVKFEDLEEYL----AEAD 242 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHc-CC--------e-EeeHHHHHHHH----hhCC
Confidence 456899999986332 2 333333 45578999999986543 44432 10 1 11112333333 3589
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+||.....+ ..+.+.+.++. +.. -++.+.+++....|
T Consensus 243 vVi~aT~s~------~~ii~~e~l~~-~~~-~~~~~~~viDla~P 279 (417)
T TIGR01035 243 IVISSTGAP------HPIVSKEDVER-ALR-ERTRPLFIIDIAVP 279 (417)
T ss_pred EEEECCCCC------CceEcHHHHHH-HHh-cCCCCeEEEEeCCC
Confidence 999875432 24556677666 321 12245566665444
No 446
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=80.57 E-value=2.1 Score=43.71 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=26.2
Q ss_pred CCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHH
Q 022451 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~ 137 (297)
...+||++|+|+ |+. ++.|++ .+..+|+.||-|-.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~-~GVg~ItlVD~D~V 373 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIG-WGVRHITFVDNGKV 373 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHH-cCCCeEEEEcCCEE
Confidence 357899999996 654 455554 57899999997643
No 447
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=80.56 E-value=31 Score=32.15 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=42.5
Q ss_pred CCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceEE
Q 022451 103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVI 179 (297)
Q Consensus 103 ~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~I 179 (297)
.++|.+||+|. |.....++...+...|..+|++++..+. +....... .......++.. +|- +-+ ...|+|
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~--~~~~~~~~I~~~~d~-~~l----~~aDiV 78 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSN--VIAGSNSKVIGTNNY-EDI----AGSDVV 78 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhh--hccCCCeEEEECCCH-HHh----CCCCEE
Confidence 36899999986 4444444433344569999999986421 11111111 11223346664 663 222 347999
Q ss_pred EEcCCCC
Q 022451 180 IGDLADP 186 (297)
Q Consensus 180 i~D~~~~ 186 (297)
+...-.+
T Consensus 79 I~tag~~ 85 (321)
T PTZ00082 79 IVTAGLT 85 (321)
T ss_pred EECCCCC
Confidence 9866443
No 448
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=80.34 E-value=8.9 Score=38.19 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=65.1
Q ss_pred CCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCC-------CCCeEEEEcchH
Q 022451 102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDAR 166 (297)
Q Consensus 102 ~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~-------~~rv~~~~~Da~ 166 (297)
+.++|.+||+| +..++..+++. ..+|+++|.+++.++.+++++... ...+. -.|++.. .|.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~- 79 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL- 79 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH-
Confidence 45689999998 34566666654 468999999999998776543210 00000 0123322 332
Q ss_pred HHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 167 ~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+-+ ...|+||-..++.. -...++|.. +.+.++|+-+|+.|+.+
T Consensus 80 ~~l----~~aDlVIEav~E~~-------~vK~~vf~~-l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 80 HAL----ADAGLVIEAIVENL-------EVKKALFAQ-LEELCPADTIIASNTSS 122 (503)
T ss_pred HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECCCC
Confidence 222 35899998876422 124567888 78888998888888743
No 449
>PRK06153 hypothetical protein; Provisional
Probab=80.08 E-value=2.1 Score=41.02 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=25.8
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECC
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid 135 (297)
...+|+++||| +|+...+.+...+..+|+.||-|
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999997 45555555555578999999988
No 450
>PRK06046 alanine dehydrogenase; Validated
Probab=80.06 E-value=42 Score=31.29 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=63.3
Q ss_pred cEEEEEeCCcee-EEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECC
Q 022451 59 DIALLDTKPFGK-ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 59 ~i~V~~~~~~g~-~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid 135 (297)
.|.+++... |+ ...+||...+.-+... .-.+. .-++..++++++.+||+|.=+ .+..+....+...|.+++.+
T Consensus 88 ~i~L~d~~t-G~p~aild~~~lT~~RTaA--~sala-~~~La~~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~ 163 (326)
T PRK06046 88 VIILNSPET-GFPLAIMDGTYLTDMRTGA--AGGVA-AKYLARKDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT 163 (326)
T ss_pred EEEEEeCCC-CceEEEEcCccHHHHHHHH--HHHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence 455666554 33 3356776544433211 01111 123445678999999998532 23444445678899999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 136 ~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
++-.+...+.+... ...++. ...|..+.+ + .|+|++-.+.
T Consensus 164 ~~~~~~~~~~~~~~----~~~~v~-~~~~~~~~l----~-aDiVv~aTps 203 (326)
T PRK06046 164 KSSAEKFVERMSSV----VGCDVT-VAEDIEEAC----D-CDILVTTTPS 203 (326)
T ss_pred HHHHHHHHHHHHhh----cCceEE-EeCCHHHHh----h-CCEEEEecCC
Confidence 98776655544311 011232 245655544 2 7999987653
No 451
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.05 E-value=16 Score=33.26 Aligned_cols=95 Identities=20% Similarity=0.280 Sum_probs=55.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc---chHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN---DARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~---Da~~~l~~~~~~y 176 (297)
..+.+||++|+|. |..+.++++..+...|.+++.+++..+.++++ +.. .++.. +....-....+.+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL-GAT---------ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CCe---------EEecCCCCCHHHHHHhcCCCC
Confidence 4568999997642 44556666655544589999999988887653 211 11111 1111111134569
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+..... ...... +.++|+++|.++.-
T Consensus 228 d~v~~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 256 (334)
T cd08234 228 DVVIEATGV------------PKTLEQ-AIEYARRGGTVLVF 256 (334)
T ss_pred cEEEECCCC------------hHHHHH-HHHHHhcCCEEEEE
Confidence 999854211 134555 56889999998754
No 452
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=79.81 E-value=27 Score=31.35 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCc
Q 022451 116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL 195 (297)
Q Consensus 116 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L 195 (297)
+++.+.+..+..+|+++|.++...+.|++. +.. .-...+ .+.+ ..+|+|++..+-.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~---------~~~~~~-~~~~----~~~DlvvlavP~~--------- 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GII---------DEASTD-IEAV----EDADLVVLAVPVS--------- 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSS---------SEEESH-HHHG----GCCSEEEE-S-HH---------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCe---------eeccCC-HhHh----cCCCEEEEcCCHH---------
Confidence 356666665578999999999999998764 111 111222 3333 3469999986521
Q ss_pred ccHHHHHHHHcccCCCCcEEE
Q 022451 196 YTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 196 ~t~ef~~~~~~~~L~pgGvl~ 216 (297)
...++++. +...|++|++++
T Consensus 57 ~~~~~l~~-~~~~~~~~~iv~ 76 (258)
T PF02153_consen 57 AIEDVLEE-IAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHH-HHCGS-TTSEEE
T ss_pred HHHHHHHH-hhhhcCCCcEEE
Confidence 14578888 788899887765
No 453
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=79.76 E-value=18 Score=37.59 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=52.9
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++|.+||+|. +.+++.+.+.....+|+++|.+++-++.+++. +.. +. ...|..+.+ ...|+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~-----~~----~~~~~~~~~----~~aDvVil 69 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVI-----DR----GEEDLAEAV----SGADVIVL 69 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCC-----Cc----ccCCHHHHh----cCCCEEEE
Confidence 6899999873 33455555432124799999999887776653 110 00 112322333 35799998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
..+.. ...+.++. ++..++++-+++
T Consensus 70 avp~~---------~~~~vl~~-l~~~~~~~~ii~ 94 (735)
T PRK14806 70 AVPVL---------AMEKVLAD-LKPLLSEHAIVT 94 (735)
T ss_pred CCCHH---------HHHHHHHH-HHHhcCCCcEEE
Confidence 86521 13467777 677787765443
No 454
>PRK06141 ornithine cyclodeaminase; Validated
Probab=79.71 E-value=52 Score=30.49 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=62.4
Q ss_pred cEEEEEeCCcee-EEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHH--HHHhcCCCcEEEEEECC
Q 022451 59 DIALLDTKPFGK-ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDID 135 (297)
Q Consensus 59 ~i~V~~~~~~g~-~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~--~l~~~~~~~~v~~VEid 135 (297)
.+.+++.+. |+ ..++||...+.-+.... -.+. .-++..++.++|++||+|.=+... .++...+..+|.++..+
T Consensus 84 ~v~l~d~~t-G~p~ai~d~~~lT~~RTaa~--sala-~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs 159 (314)
T PRK06141 84 TYLLFDGRT-GEPLALVDGTELTARRTAAA--SALA-ASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD 159 (314)
T ss_pred EEEEEECCC-CCEEEEEcCcchhcchhHHH--HHHH-HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 455666554 44 33668877665443211 0111 113345678999999997544433 33444567899999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 136 ~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
++-.+...+.+... ..++.. ..+..+.+ ...|+|++-.+
T Consensus 160 ~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av----~~aDIVi~aT~ 198 (314)
T PRK06141 160 PAKAEALAAELRAQ-----GFDAEV-VTDLEAAV----RQADIISCATL 198 (314)
T ss_pred HHHHHHHHHHHHhc-----CCceEE-eCCHHHHH----hcCCEEEEeeC
Confidence 87765444433211 112332 35554444 35899966544
No 455
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.28 E-value=15 Score=29.55 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=43.1
Q ss_pred CCCCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.++++|+++|+|. ..++..+.+. +..+|++++.+++-.+...+.+... .+.....|..+. -+..|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~Dv 84 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL----LAEADL 84 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc----cccCCE
Confidence 4578999999863 2234444443 2468999999987665544333211 011222332222 356999
Q ss_pred EEEcCCCC
Q 022451 179 IIGDLADP 186 (297)
Q Consensus 179 Ii~D~~~~ 186 (297)
|++..+.+
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 99988754
No 456
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=79.16 E-value=12 Score=34.41 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=43.9
Q ss_pred CccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 022451 76 GKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 76 g~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
|.+...+.|..-+.+.|.....-.....++||++|.|+-+- +..+++. +..+|+++..+++-.+...+.|.
T Consensus 99 g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~~~i~V~NRt~~ra~~La~~~~ 171 (283)
T COG0169 99 GKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GAKRITVVNRTRERAEELADLFG 171 (283)
T ss_pred CEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhh
Confidence 66666666655555555432111123468999999986654 3445554 56799999998776655555544
No 457
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.15 E-value=32 Score=31.89 Aligned_cols=110 Identities=16% Similarity=0.255 Sum_probs=56.0
Q ss_pred eEEEEccch-hHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC-CCeEEEEcchHHHHhccCCCceEEEE
Q 022451 105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-PRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~-~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+|-+||+|. |... ..++...-..++..+|++++..+--..-+... ..+.. .++++..+|- +-+ +.-|+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y-~~~----~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDY-DDC----ADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCH-HHh----CCCCEEEE
Confidence 478899985 5544 33444333458999999876543322212111 11122 3577777772 222 45899999
Q ss_pred cCCCCCCCCCc---cCcc--cHHHHHHHHc--ccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPC---YKLY--TKSFYEFVVK--PRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~---~~L~--t~ef~~~~~~--~~L~pgGvl~~~~~ 220 (297)
-+-.|...+.. ..|+ ..+.++.++. ..-.|+|++++-++
T Consensus 75 taG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 75 TAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 76654321111 1111 1223333111 23448898876654
No 458
>PRK06194 hypothetical protein; Provisional
Probab=79.04 E-value=16 Score=32.57 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=45.7
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--H----h--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L----E-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l----~-- 170 (297)
..++||+.|+++|. +++.+++. ..+|++++.++...+...+.+... ..++.++..|..+. + .
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAAL--GMKLVLADVQQDALDRAVAELRAQ-----GAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHhc-----CCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789998865432 33444443 468999999876655443332211 24677788886432 1 1
Q ss_pred -ccCCCceEEEEcCCC
Q 022451 171 -SRKESYDVIIGDLAD 185 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~~ 185 (297)
....+.|+|++.+..
T Consensus 78 ~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 78 LERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHcCCCCEEEECCCC
Confidence 112468999998753
No 459
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=78.96 E-value=14 Score=32.23 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=45.5
Q ss_pred CCCCeEEEEccchhHHH----HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH----------
Q 022451 101 PNPKTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR---------- 166 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~----~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~---------- 166 (297)
.+.+.||+.|+. |.++ +++++. ..+|.+++.++.-.+...+.+... ...++.++..|..
T Consensus 10 ~~~k~vlItG~~-g~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~ 82 (247)
T PRK08945 10 LKDRIILVTGAG-DGIGREAALTYARH--GATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQL 82 (247)
T ss_pred cCCCEEEEeCCC-chHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHH
Confidence 356889999964 4443 444443 358999999986655444333211 1245666665552
Q ss_pred -HHHhccCCCceEEEEcCC
Q 022451 167 -AELESRKESYDVIIGDLA 184 (297)
Q Consensus 167 -~~l~~~~~~yD~Ii~D~~ 184 (297)
+.+.....+.|.|++.+.
T Consensus 83 ~~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 83 ADTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHHhCCCCEEEECCc
Confidence 122223357899999875
No 460
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.91 E-value=7.3 Score=35.49 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=43.5
Q ss_pred CCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCce
Q 022451 102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYD 177 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~yD 177 (297)
+.++||+.|+ +|.++..+.+. ....+|+++..++.-............ ..++++++.+|..+. +...-+..|
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~d 78 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG---AKERLHLFKANLLEEGSFDSVVDGCE 78 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC---CCCceEEEeccccCcchHHHHHcCCC
Confidence 4578999995 55555444432 123578888777543222221111111 135788999987542 222123589
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
.||+.+.
T Consensus 79 ~Vih~A~ 85 (322)
T PLN02662 79 GVFHTAS 85 (322)
T ss_pred EEEEeCC
Confidence 9998765
No 461
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.81 E-value=3.1 Score=35.24 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=23.0
Q ss_pred eEEEEccch-hH-HHHHHHhcCCCcEEEEEECCH
Q 022451 105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 105 ~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (297)
+|+++|+|+ |+ ++..+.+ .+..+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 589999984 44 3455554 4678999999986
No 462
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=78.67 E-value=12 Score=35.69 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=24.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid 135 (297)
-...+||++|+|+ |+.....+...+..+++.+|-|
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567899999984 3333333334568899999998
No 463
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.67 E-value=15 Score=33.76 Aligned_cols=98 Identities=13% Similarity=0.256 Sum_probs=55.1
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-----hcc-CCCC-------CCCeEEEEcchHHH
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----VNK-EAFS-------DPRLELVINDARAE 168 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-----~~~-~~~~-------~~rv~~~~~Da~~~ 168 (297)
.+|.+||+| ++.++..+++. ..+|+++|.+++.++.+++... ... .... -.++++ ..|..+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~-~~~~~~a 79 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV-TDSLADA 79 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE-ECcHHHh
Confidence 379999998 34456666664 3589999999988887654321 000 0000 012332 2343332
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+ +..|+|+...++.. -....+|+. +.+.+.++-+++
T Consensus 80 ~----~~ad~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~ii~ 115 (308)
T PRK06129 80 V----ADADYVQESAPENL-------ELKRALFAE-LDALAPPHAILA 115 (308)
T ss_pred h----CCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCcceEE
Confidence 2 34799998876421 123456776 566665554444
No 464
>PRK07102 short chain dehydrogenase; Provisional
Probab=78.67 E-value=14 Score=32.08 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=44.5
Q ss_pred CeEEEEccchhHHH----HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------HhccC
Q 022451 104 KTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LESRK 173 (297)
Q Consensus 104 ~~VL~iG~G~G~~~----~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~~~ 173 (297)
++|++.|+. |+++ +.+++. ..+|++++.++.-.+...+.+... ...+++++..|..+. +....
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAA--GARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHHh
Confidence 578999954 4444 444443 358999999886554333322211 135788888876432 33233
Q ss_pred CCceEEEEcCC
Q 022451 174 ESYDVIIGDLA 184 (297)
Q Consensus 174 ~~yD~Ii~D~~ 184 (297)
.++|++++...
T Consensus 75 ~~~d~vv~~ag 85 (243)
T PRK07102 75 ALPDIVLIAVG 85 (243)
T ss_pred hcCCEEEECCc
Confidence 46899998764
No 465
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=78.60 E-value=36 Score=31.20 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=37.8
Q ss_pred cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEEECCHHHHHH
Q 022451 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEF 141 (297)
Q Consensus 75 dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~ 141 (297)
||.+...+.|..-+.+.+.. ......+++||+||+|+.+-+ ..+++ .+..+|++++.+++-.+.
T Consensus 101 ~g~l~G~NTD~~Gf~~~L~~--~~~~~~~k~vlilGaGGaarAi~~aL~~-~g~~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 101 TGHTTGHNTDVSGFGRGMEE--GLPNAKLDSVVQVGAGGVGNAVAYALVT-HGVQKLQVADLDTSRAQA 166 (283)
T ss_pred CCcEEEEcCCHHHHHHHHHh--cCcCcCCCeEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHH
Confidence 55555555554444444432 111245689999999866533 33344 456799999998754443
No 466
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=78.60 E-value=16 Score=27.00 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=49.9
Q ss_pred eEEEEccchh--HHHHHHHhcC-CCcEEEEE-ECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 105 TIFIMGGGEG--STAREILRHK-TVEKVVMC-DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 105 ~VL~iG~G~G--~~~~~l~~~~-~~~~v~~V-Eid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+|.+||+|.= .+++-+++.. ...+|..+ +.+++-.+..++.++ +.+...|..+.++ ..|+|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~----~advvi 66 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQ----EADVVI 66 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHH----HTSEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhc----cCCEEE
Confidence 4778888733 3345555432 33688855 999998877665432 3344445555554 479999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+..+.. . -.+.+.. + ..+.++.+++
T Consensus 67 lav~p~-------~--~~~v~~~-i-~~~~~~~~vi 91 (96)
T PF03807_consen 67 LAVKPQ-------Q--LPEVLSE-I-PHLLKGKLVI 91 (96)
T ss_dssp E-S-GG-------G--HHHHHHH-H-HHHHTTSEEE
T ss_pred EEECHH-------H--HHHHHHH-H-hhccCCCEEE
Confidence 986421 1 2356666 5 4555565553
No 467
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=78.50 E-value=23 Score=28.52 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=45.9
Q ss_pred CeEEEEccchhH---HHHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchH------HHH---
Q 022451 104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AEL--- 169 (297)
Q Consensus 104 ~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~------~~l--- 169 (297)
|.||+.|+++|. +++.+++. +..+|..+..+ .+..+...+.+... ..++.++..|.. ..+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAP-----GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHT-----TSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeeccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 468899976543 34555554 46688899888 33333333323321 367888887752 222
Q ss_pred hccCCCceEEEEcCCC
Q 022451 170 ESRKESYDVIIGDLAD 185 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~ 185 (297)
.....+.|++|..+..
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 2234689999998764
No 468
>PLN02702 L-idonate 5-dehydrogenase
Probab=78.43 E-value=10 Score=35.40 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=57.8
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHHHh----ccC
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELE----SRK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~--~~~Da~~~l~----~~~ 173 (297)
....+||++|+| -|..+.++++..+...|.+++.++.-.+.++++ +... .+.+ ...+..+.+. ...
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~~------~~~~~~~~~~~~~~~~~~~~~~~ 252 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GADE------IVLVSTNIEDVESEVEEIQKAMG 252 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCCE------EEecCcccccHHHHHHHHhhhcC
Confidence 456799999764 234456666666666789999999888888874 2210 1111 1123323222 123
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.+|+|+--... + ..+.. +.++|+++|.++..
T Consensus 253 ~~~d~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~ 284 (364)
T PLN02702 253 GGIDVSFDCVGF-----N-------KTMST-ALEATRAGGKVCLV 284 (364)
T ss_pred CCCCEEEECCCC-----H-------HHHHH-HHHHHhcCCEEEEE
Confidence 468988754221 1 23455 57889999998754
No 469
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=78.30 E-value=3.2 Score=37.06 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=26.6
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVV 139 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi 139 (297)
...+||++|+|+ |+.....+...+..+++.+|-|..-.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 357899999873 55444444445789999999875443
No 470
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=78.30 E-value=9.6 Score=29.09 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=37.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-+.++||++|+|.-+..+.-.-....++|+++..+. +.++ .+++++..+.... -..+|+|+
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~~~----l~~~~lV~ 65 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFEED----LDGADLVF 65 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-GGG----CTTESEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHHHH----HhhheEEE
Confidence 467899999998666543322223358999998876 2222 3455554443222 24589999
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
....
T Consensus 66 ~at~ 69 (103)
T PF13241_consen 66 AATD 69 (103)
T ss_dssp E-SS
T ss_pred ecCC
Confidence 7654
No 471
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=78.29 E-value=28 Score=31.90 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=56.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~ 178 (297)
.+..+||+.|+|+ |..+.++++..+...|+++.-++...+.++++ +.. .-+........+..... ...+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GAD------DTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC------EEecCccccHHHHHHHhCCCCCCE
Confidence 4567899997654 45556666665554589998888877777553 211 00111111112222222 245999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+.... . ...+.. +.++|+++|.++.-
T Consensus 231 vld~~g------~------~~~~~~-~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG------S------PATIEQ-ALALARPGGKVVLV 257 (343)
T ss_pred EEECCC------C------HHHHHH-HHHHhhcCCEEEEE
Confidence 985421 1 133455 57889999998754
No 472
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=78.28 E-value=6.3 Score=36.60 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=41.8
Q ss_pred CeEEEEccchhHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH---HHHhccCCCce
Q 022451 104 KTIFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR---AELESRKESYD 177 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~---~~l~~~~~~yD 177 (297)
++||+.|+ +|.++.++.+.. +..+|.+++.++.-.. ..+ ..+.++++.+|.+ ..+...-+..|
T Consensus 2 ~~ilVtGa-tGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~---~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~d 70 (347)
T PRK11908 2 KKVLILGV-NGFIGHHLSKRILETTDWEVYGMDMQTDRLG---DLV-------NHPRMHFFEGDITINKEWIEYHVKKCD 70 (347)
T ss_pred cEEEEECC-CcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH---Hhc-------cCCCeEEEeCCCCCCHHHHHHHHcCCC
Confidence 36999884 566666555421 2358999987653211 111 2356889999975 33433224689
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+||+-+.
T Consensus 71 ~ViH~aa 77 (347)
T PRK11908 71 VILPLVA 77 (347)
T ss_pred EEEECcc
Confidence 9997543
No 473
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.82 E-value=14 Score=32.49 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCCeEEEEccchhHHHHH----HHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------
Q 022451 102 NPKTIFIMGGGEGSTARE----ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--------- 168 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~----l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--------- 168 (297)
..+++|+.|+ +|.++.. ++++ ..+|++++.++.-.+...+.+... ..++.++..|..+.
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEA--GARVVLSARKAEELEEAAAHLEAL-----GIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHH
Confidence 4578999985 4455444 4443 358999999887666555443221 24667777776421
Q ss_pred HhccCCCceEEEEcCC
Q 022451 169 LESRKESYDVIIGDLA 184 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~ 184 (297)
+.....+.|.|++.+.
T Consensus 83 ~~~~~~~id~vi~~ag 98 (259)
T PRK08213 83 TLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1112246899999865
No 474
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.68 E-value=20 Score=31.27 Aligned_cols=76 Identities=22% Similarity=0.204 Sum_probs=46.5
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~-- 170 (297)
.++++|+.|+++|. +++.+++. ..+|..++.++.-.+.+.+.+... +.++.++..|..+ .+.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFARE--GAKVVVADRDAAGGEETVALIREA-----GGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 46789999965432 23444443 358999999987665544433221 2467888887632 121
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
..-.+.|+|++.+.
T Consensus 79 ~~~~g~id~li~~ag 93 (253)
T PRK06172 79 IAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 12246899998875
No 475
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=77.52 E-value=48 Score=30.10 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=55.1
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
....+||+.|+| .|..+.++++..+ .+|+++..+++..+.+++. +.. .-+.....+ ......+.+|++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~---~~~~~~~~~d~v 229 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GAD------EVVDSGAEL---DEQAAAGGADVI 229 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CCc------EEeccCCcc---hHHhccCCCCEE
Confidence 456789999876 4555566666544 5799999999888887653 211 000101111 111122468988
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.-... ...... +.++|+++|.++.-.
T Consensus 230 i~~~~~------------~~~~~~-~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVVS------------GAAAEA-ALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCCc------------HHHHHH-HHHhcccCCEEEEEC
Confidence 743221 123455 568899999887653
No 476
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.35 E-value=20 Score=32.93 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=54.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.++.+||+.|+|+ |..+.++++..+..+|.+++-++.-.+.++++ +.. .-+.....+.. .+.. ..+.+|
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~-~~~~~~~~~~vd 233 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GAD------VVINPREEDVV-EVKSVTDGTGVD 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Ccc------eeeCcccccHH-HHHHHcCCCCCC
Confidence 4567899876543 34456666665544788887777777777653 211 11111122222 2222 234689
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+-.... ...... +.++|+++|.++..
T Consensus 234 ~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 261 (341)
T cd05281 234 VVLEMSGN------------PKAIEQ-GLKALTPGGRVSIL 261 (341)
T ss_pred EEEECCCC------------HHHHHH-HHHHhccCCEEEEE
Confidence 99865321 123445 56889999998764
No 477
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=77.30 E-value=14 Score=33.61 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=50.8
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEE---EEcchHHHHhccCCCceE
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL---VINDARAELESRKESYDV 178 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~~~rv~~---~~~Da~~~l~~~~~~yD~ 178 (297)
+|++||+|.-+ ++..+.+. ..+|+.++. +.-++..++. +.... .+....+ ...|. ....+.+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~----~~~~~~~d~ 71 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRS---DHGDAVVPGPVITDP----EELTGPFDL 71 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEe---CCCeEEecceeecCH----HHccCCCCE
Confidence 68999998544 34555543 357999998 6666655542 11111 0011111 11121 111267999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
|++-...+ ...+.++. ++..+.++.+++
T Consensus 72 vilavk~~---------~~~~~~~~-l~~~~~~~~~ii 99 (305)
T PRK12921 72 VILAVKAY---------QLDAAIPD-LKPLVGEDTVII 99 (305)
T ss_pred EEEEeccc---------CHHHHHHH-HHhhcCCCCEEE
Confidence 99886532 13466777 678888877654
No 478
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=77.03 E-value=27 Score=30.75 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=39.7
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
.+....|-+.|+.|.|-.++.-..+.+. .+-..+|=|+..++.+++.++
T Consensus 34 VL~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p 82 (225)
T TIGR01627 34 VLTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPP 82 (225)
T ss_pred HHHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCC
Confidence 3445678999999999999988888763 566889999999999887654
No 479
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=76.90 E-value=9.4 Score=36.23 Aligned_cols=72 Identities=31% Similarity=0.375 Sum_probs=41.3
Q ss_pred EEEEccc-hhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCceEEEE
Q 022451 106 IFIMGGG-EGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVIIG 181 (297)
Q Consensus 106 VL~iG~G-~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~yD~Ii~ 181 (297)
|++||+| .|. +++.|+++.+..+|++++.+++-.+...+.+ ...+++.+.-|+.+. |...-+..|+|+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~l~~~~~~~dvVin 73 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-------LGDRVEAVQVDVNDPESLAELLRGCDVVIN 73 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-------cccceeEEEEecCCHHHHHHHHhcCCEEEE
Confidence 7899984 222 3455555544449999999999876665432 236788888886532 3332245699998
Q ss_pred cCC
Q 022451 182 DLA 184 (297)
Q Consensus 182 D~~ 184 (297)
-+.
T Consensus 74 ~~g 76 (386)
T PF03435_consen 74 CAG 76 (386)
T ss_dssp -SS
T ss_pred CCc
Confidence 764
No 480
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=76.84 E-value=72 Score=30.93 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=61.9
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH----HH-----hcc--
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA----EL-----ESR-- 172 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~----~l-----~~~-- 172 (297)
.+|-++|+|-=++...+.-.....+|+++|||+..++...+- +..+..-|... .+ +.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----------~~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----------ESYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----------cceeecCcHHHHHHHHHhcCCceEecC
Confidence 678999998555544333222346899999999999876642 11111111111 11 111
Q ss_pred ---CCCceEEEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 173 ---KESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 173 ---~~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
-...|++++-.+.|....-...| |-...-+. +.+.|++|-.+++.+..|
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~s-Ia~~L~kG~LVIlEST~~ 131 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARS-IAPVLKKGDLVILESTTP 131 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHH-HHHhcCCCCEEEEecCCC
Confidence 13688888887766532111122 22234455 579999999888887543
No 481
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.68 E-value=5.7 Score=38.08 Aligned_cols=43 Identities=5% Similarity=0.069 Sum_probs=33.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (297)
..+..+||.|..|+......+.+. .++|++||+||.-..+.+-
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~--P~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAG--PKRIHAVDLNPAQNALLEL 75 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcC--CceEEEEeCCHHHHHHHHH
Confidence 356678999988777777666654 4799999999998877554
No 482
>PRK07904 short chain dehydrogenase; Provisional
Probab=76.62 E-value=21 Score=31.56 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=45.2
Q ss_pred CCCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHH-HHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh
Q 022451 101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARA------ELE 170 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~ 170 (297)
..+++||+.|+++|. +++++++. +..+|++++.++.- .+.+.+.+... ...+++++..|..+ .++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~-gg~~V~~~~r~~~~~~~~~~~~l~~~----~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKN-APARVVLAALPDDPRRDAAVAQMKAA----GASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhc-CCCeEEEEeCCcchhHHHHHHHHHhc----CCCceEEEEecCCChHHHHHHHH
Confidence 567889999975442 23444443 23689999888763 44333323221 12467888777532 122
Q ss_pred c--cCCCceEEEEcCC
Q 022451 171 S--RKESYDVIIGDLA 184 (297)
Q Consensus 171 ~--~~~~yD~Ii~D~~ 184 (297)
. ..++.|+++....
T Consensus 81 ~~~~~g~id~li~~ag 96 (253)
T PRK07904 81 AAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHhcCCCCEEEEeee
Confidence 1 1257999887654
No 483
>PRK08223 hypothetical protein; Validated
Probab=76.30 E-value=3.7 Score=37.83 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVV 139 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi 139 (297)
...+||++|||+ |+.....+...+..+++.+|-|.--.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~ 64 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL 64 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch
Confidence 467999999985 44434444445789999999885444
No 484
>PLN00203 glutamyl-tRNA reductase
Probab=76.18 E-value=36 Score=34.08 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=55.3
Q ss_pred CCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
..++|++||+|.=+ ++..+.. .+..+|++++.+++-.+...+.++ ...+.+.. .|....+ ...|+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~-~G~~~V~V~nRs~era~~La~~~~-------g~~i~~~~~~dl~~al----~~aDV 332 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVS-KGCTKMVVVNRSEERVAALREEFP-------DVEIIYKPLDEMLACA----AEADV 332 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhC-------CCceEeecHhhHHHHH----hcCCE
Confidence 36899999996322 2333333 345689999999876655443322 01222221 2322222 46899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCC--CcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p--gGvl~~~~~~p 222 (297)
||...+.+ ..+++.+.++. +...=+. .-.+++-...|
T Consensus 333 VIsAT~s~------~pvI~~e~l~~-~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 333 VFTSTSSE------TPLFLKEHVEA-LPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred EEEccCCC------CCeeCHHHHHH-hhhcccccCCCeEEEEeCCC
Confidence 99865432 24667787777 4321111 12566665544
No 485
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.15 E-value=17 Score=31.57 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=45.0
Q ss_pred CCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH---------HHhc
Q 022451 103 PKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---------ELES 171 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~---------~l~~ 171 (297)
.++||+.|+. |.++..++++ ....+|.+++.++.-.+...+..... ..++.++..|..+ .+..
T Consensus 4 ~~~vlItG~s-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 4 GKVALVTGAA-SGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA-----GGKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4688988864 4554444432 12458999999887665444332211 2567778877532 1212
Q ss_pred cCCCceEEEEcCC
Q 022451 172 RKESYDVIIGDLA 184 (297)
Q Consensus 172 ~~~~yD~Ii~D~~ 184 (297)
.....|+|++.+.
T Consensus 78 ~~~~~d~vi~~a~ 90 (258)
T PRK12429 78 TFGGVDILVNNAG 90 (258)
T ss_pred HcCCCCEEEECCC
Confidence 2246899998775
No 486
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=76.13 E-value=13 Score=40.22 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCc------------EEEEEECCHHHHHHHHhhhhhccCCCCCCC---eEEEEcc
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVE------------KVVMCDIDEEVVEFCKSYLVVNKEAFSDPR---LELVIND 164 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~------------~v~~VEid~~vi~~a~~~f~~~~~~~~~~r---v~~~~~D 164 (297)
..++||+||+|- |. .+..+++..... .|+++|++++-.+.+.+.+ ++ +.+-..|
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~~~~v~lDv~D 638 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------ENAEAVQLDVSD 638 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CCCceEEeecCC
Confidence 467999999982 33 445555543221 4999999987665444322 23 3333445
Q ss_pred hHHHHhccCCCceEEEEcCCCC
Q 022451 165 ARAELESRKESYDVIIGDLADP 186 (297)
Q Consensus 165 a~~~l~~~~~~yD~Ii~D~~~~ 186 (297)
..+..... ...|+|++-++..
T Consensus 639 ~e~L~~~v-~~~DaVIsalP~~ 659 (1042)
T PLN02819 639 SESLLKYV-SQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHHhh-cCCCEEEECCCch
Confidence 44433321 3499999988743
No 487
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=76.05 E-value=17 Score=33.03 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=41.3
Q ss_pred CCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++||++|+|+-+ ++..+.. .+..+|+++..+++-.+...+.+... ..+.+ ..+..+ .-..+|+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~-~g~~~V~v~~R~~~~a~~l~~~~~~~------~~~~~-~~~~~~----~~~~~Di 188 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLD-LGVAEITIVNRTVERAEELAKLFGAL------GKAEL-DLELQE----ELADFDL 188 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhhhc------cceee-cccchh----ccccCCE
Confidence 456899999986322 1233333 34579999999987655444333211 11333 112111 1256999
Q ss_pred EEEcCCCC
Q 022451 179 IIGDLADP 186 (297)
Q Consensus 179 Ii~D~~~~ 186 (297)
||...+..
T Consensus 189 vInaTp~g 196 (278)
T PRK00258 189 IINATSAG 196 (278)
T ss_pred EEECCcCC
Confidence 99887643
No 488
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=75.99 E-value=21 Score=32.64 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=58.3
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
....+||+.|+|. |..+.++++.. ..+|+++..+++-.+.++++ +.. .-+.....+..+.+.. ..+.+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~-g~~------~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFAREL-GAD------DTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHh-CCC------EEecCcccCHHHHHHHHhCCCCCC
Confidence 4577999998653 55666677765 46788898888888877653 211 1111122232233322 234599
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+..... .+.+.. +.+.|+++|.++..
T Consensus 230 ~vld~~g~------------~~~~~~-~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATGN------------PASMEE-AVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCCC------------HHHHHH-HHHHHhcCCEEEEE
Confidence 99865321 134455 57889999998754
No 489
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=75.73 E-value=12 Score=34.87 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~y 176 (297)
+..++||+.|+ +|.++..+++.. ...+|.+++.++.-.+.....+ . ..++++++.+|..+. +...-+.+
T Consensus 8 ~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~--~----~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (353)
T PLN02896 8 SATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKW--K----EGDRLRLFRADLQEEGSFDEAVKGC 80 (353)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhh--c----cCCeEEEEECCCCCHHHHHHHHcCC
Confidence 56788999985 556554444321 2357888877654322211111 1 125788888886432 22212358
Q ss_pred eEEEEcCCC
Q 022451 177 DVIIGDLAD 185 (297)
Q Consensus 177 D~Ii~D~~~ 185 (297)
|.||+-+..
T Consensus 81 d~Vih~A~~ 89 (353)
T PLN02896 81 DGVFHVAAS 89 (353)
T ss_pred CEEEECCcc
Confidence 999988763
No 490
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=75.71 E-value=4.3 Score=37.01 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=27.4
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHH
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~ 137 (297)
...+|+++|+| .|+.+.+.+...+..+++.+|.|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 56799999998 4555555555567899999998843
No 491
>PRK07574 formate dehydrogenase; Provisional
Probab=75.69 E-value=20 Score=34.51 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=58.0
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++|.+||+|. |. +++.+.. + ..+|.++|..+...+..+.. .++. ..+..+.+ ...|+|
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~-f-G~~V~~~dr~~~~~~~~~~~-----------g~~~-~~~l~ell----~~aDvV 252 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKP-F-DVKLHYTDRHRLPEEVEQEL-----------GLTY-HVSFDSLV----SVCDVV 252 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-C-CCEEEEECCCCCchhhHhhc-----------Ccee-cCCHHHHh----hcCCEE
Confidence 457899999984 43 3333333 3 46899999875322222211 1221 23444444 457999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
++.++... . ..++++.+.|. .+|+|. +++|+.- ...-...++.+.+++
T Consensus 253 ~l~lPlt~--~-T~~li~~~~l~-----~mk~ga-~lIN~aR----G~iVDe~AL~~AL~s 300 (385)
T PRK07574 253 TIHCPLHP--E-TEHLFDADVLS-----RMKRGS-YLVNTAR----GKIVDRDAVVRALES 300 (385)
T ss_pred EEcCCCCH--H-HHHHhCHHHHh-----cCCCCc-EEEECCC----CchhhHHHHHHHHHh
Confidence 99987432 1 13555655544 456655 5578631 111223566666664
No 492
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=75.40 E-value=8.1 Score=35.57 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=24.3
Q ss_pred CCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHH
Q 022451 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~ 137 (297)
...+||++|+|+-+ ++..|.. .+..+|+.+|-|..
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLal-aGVg~itI~D~d~v 54 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLIL-AGVKSVTLHDTKPC 54 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCCcc
Confidence 45689999997332 2344443 57899999998853
No 493
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=75.37 E-value=11 Score=32.35 Aligned_cols=70 Identities=27% Similarity=0.416 Sum_probs=43.7
Q ss_pred eEEEEccchhHHHHHHHh------cCCCcEEEEEECCHHHHHHH----HhhhhhccCCCCCCCeEE-EEcchHHHHhccC
Q 022451 105 TIFIMGGGEGSTAREILR------HKTVEKVVMCDIDEEVVEFC----KSYLVVNKEAFSDPRLEL-VINDARAELESRK 173 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~------~~~~~~v~~VEid~~vi~~a----~~~f~~~~~~~~~~rv~~-~~~Da~~~l~~~~ 173 (297)
+|.+||+|+-.++..+.. ..+..+|..+|+|++-++.. ++.+... ...+++ ...|-++.|+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-----~~~~~v~~ttd~~eAl~--- 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-----GADLKVEATTDRREALE--- 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-----TTSSEEEEESSHHHHHT---
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-----CCCeEEEEeCCHHHHhC---
Confidence 578899998777654442 23566999999999777654 4444332 234454 4567777774
Q ss_pred CCceEEEEcC
Q 022451 174 ESYDVIIGDL 183 (297)
Q Consensus 174 ~~yD~Ii~D~ 183 (297)
-.|.|+.-.
T Consensus 73 -gADfVi~~i 81 (183)
T PF02056_consen 73 -GADFVINQI 81 (183)
T ss_dssp -TESEEEE--
T ss_pred -CCCEEEEEe
Confidence 378888754
No 494
>PRK08655 prephenate dehydrogenase; Provisional
Probab=75.33 E-value=56 Score=31.86 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=49.1
Q ss_pred eEEEEc-cc-hhH-HHHHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 105 TIFIMG-GG-EGS-TAREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 105 ~VL~iG-~G-~G~-~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+|++|| +| -|. ++..+.+. ..+|++++.++... +.+++. + +. ...|..+.+ ...|+|+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~~-g----------v~-~~~~~~e~~----~~aDvVI 63 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKEL-G----------VE-YANDNIDAA----KDADIVI 63 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHHc-C----------Ce-eccCHHHHh----ccCCEEE
Confidence 689997 45 333 44555443 24799999998765 444432 1 11 123333333 3479999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+..+.. ...+.++. +...++++.+++
T Consensus 64 lavp~~---------~~~~vl~~-l~~~l~~~~iVi 89 (437)
T PRK08655 64 ISVPIN---------VTEDVIKE-VAPHVKEGSLLM 89 (437)
T ss_pred EecCHH---------HHHHHHHH-HHhhCCCCCEEE
Confidence 986521 12466777 677888877554
No 495
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.29 E-value=39 Score=30.19 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+.+||+.|+ +.|..+.++++..+ .+|+++..+++-.+.++++ +.. .+-....+..+.+....+.+|+
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~~-------~~~~~~~~~~~~i~~~~~~~d~ 211 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKEL-GAD-------EVVIDDGAIAEQLRAAPGGFDK 211 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCc-------EEEecCccHHHHHHHhCCCceE
Confidence 56789999985 45666777777654 5799999888887777552 211 1100112222323222456999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+-.... ..++. +.++|+++|.++..
T Consensus 212 vl~~~~~-------------~~~~~-~~~~l~~~g~~v~~ 237 (320)
T cd08243 212 VLELVGT-------------ATLKD-SLRHLRPGGIVCMT 237 (320)
T ss_pred EEECCCh-------------HHHHH-HHHHhccCCEEEEE
Confidence 8843211 23444 56889999998754
No 496
>PRK08818 prephenate dehydrogenase; Provisional
Probab=75.11 E-value=7.6 Score=37.12 Aligned_cols=79 Identities=19% Similarity=0.082 Sum_probs=47.5
Q ss_pred CCeEEEEcc-c--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 103 PKTIFIMGG-G--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 103 ~~~VL~iG~-G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+|++||+ | +|.+++.+.+.. ..+|+++|.+. .. ..|..+.+ ...|+|
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d-------------------~~----~~~~~~~v----~~aDlV 55 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPAD-------------------PG----SLDPATLL----QRADVL 55 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCc-------------------cc----cCCHHHHh----cCCCEE
Confidence 458999998 7 566677776543 56899998740 00 01222233 458999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHccc---CCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPR---LNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~---L~pgGvl~~~~~ 220 (297)
++..|-. .+.+++++ +... |+||. +++-.+
T Consensus 56 ilavPv~---------~~~~~l~~-l~~~~~~l~~~~-iVtDVg 88 (370)
T PRK08818 56 IFSAPIR---------HTAALIEE-YVALAGGRAAGQ-LWLDVT 88 (370)
T ss_pred EEeCCHH---------HHHHHHHH-HhhhhcCCCCCe-EEEECC
Confidence 9986521 13467777 5554 67655 445544
No 497
>PRK07589 ornithine cyclodeaminase; Validated
Probab=75.08 E-value=69 Score=30.30 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=49.6
Q ss_pred hcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhccCC
Q 022451 98 LHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKE 174 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~l~~~~~ 174 (297)
+..++.+++++||+|.=+. .+.++...+..+|.+.+.+++-.+...+.+.. ..+++. ..|..+.+ .
T Consensus 124 Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~~~v~~~~~~~~av----~ 192 (346)
T PRK07589 124 LARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PGLRIVACRSVAEAV----E 192 (346)
T ss_pred hccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cCCcEEEeCCHHHHH----h
Confidence 3456789999999985443 34444456789999999998877654444331 123332 45665555 3
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
.-|+|+.-.+
T Consensus 193 ~ADIIvtaT~ 202 (346)
T PRK07589 193 GADIITTVTA 202 (346)
T ss_pred cCCEEEEecC
Confidence 4899998764
No 498
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.94 E-value=30 Score=29.92 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=44.9
Q ss_pred CCCeEEEEccchhHH----HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 022451 102 NPKTIFIMGGGEGST----AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~----~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~- 170 (297)
..+.+|+.|+ +|.+ ++++++. ..+|.+++.++.-.+...+.... ...++.++..|..+. +.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKA--GWDLALVARSQDALEALAAELRS-----TGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEccCCCHHHHHHHHHH
Confidence 4578899985 4444 4444443 35899999998755443332221 124677888886332 11
Q ss_pred --ccCCCceEEEEcCC
Q 022451 171 --SRKESYDVIIGDLA 184 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~ 184 (297)
..-.+.|+|+..+.
T Consensus 77 ~~~~~~~id~lv~~ag 92 (241)
T PRK07454 77 LLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHcCCCCEEEECCC
Confidence 11246899998764
No 499
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.88 E-value=24 Score=32.03 Aligned_cols=90 Identities=12% Similarity=0.198 Sum_probs=52.8
Q ss_pred CeEEEEccc--hhHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 104 KTIFIMGGG--EGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+|..||+| ++.++..+++.. ...+|.+.+.+++-.+.+.+.++ ++. ..|..+.+. ..|+|
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g----------~~~-~~~~~e~~~----~aDiI 67 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG----------ITI-TTNNNEVAN----SADIL 67 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC----------cEE-eCCcHHHHh----hCCEE
Confidence 369999998 445566666532 34579999999887665543221 222 234444332 46999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+..... . -.+.++. ++..++++- +++..
T Consensus 68 iLavkP~-------~--~~~vl~~-l~~~~~~~~-lvISi 96 (272)
T PRK12491 68 ILSIKPD-------L--YSSVINQ-IKDQIKNDV-IVVTI 96 (272)
T ss_pred EEEeChH-------H--HHHHHHH-HHHhhcCCc-EEEEe
Confidence 9886521 1 2355566 566676654 44443
No 500
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=74.86 E-value=7 Score=31.63 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=27.1
Q ss_pred EEccchh--HHHHHHH--hcCCCcEEEEEECCHHHHHHHHhh--hhhc
Q 022451 108 IMGGGEG--STAREIL--RHKTVEKVVMCDIDEEVVEFCKSY--LVVN 149 (297)
Q Consensus 108 ~iG~G~G--~~~~~l~--~~~~~~~v~~VEid~~vi~~a~~~--f~~~ 149 (297)
|||+..| ......+ ...+..+|.++|.+|...+..+++ ++.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7899999 5555443 344578999999999999998888 5554
Done!