BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022452
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 143/302 (47%), Gaps = 62/302 (20%)
Query: 3 HEYYIHVKKHENTLITKFFGLHRITLRGGRKVRFVVMGNMFCTELRIHRSYDLKGSTVGR 62
H+Y VK H NTL+ +F G++R+++ +VM NMF L +HR YDLKGS V R
Sbjct: 141 HQYI--VKCHGNTLLPQFLGMYRVSV-DNEDSYMLVMRNMFSHRLPVHRKYDLKGSLVSR 197
Query: 63 -CTDKDKIKENTTLKDLDLSFEFQ---MDKLLREYLFKQISIDCEFLESQQIIDYSLLLG 118
+DK+K+KE TL+D+D + Q + + ++ +++ D EFL +I+DYSLLLG
Sbjct: 198 EASDKEKVKELPTLRDMDFLNKNQKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLG 257
Query: 119 LH----FRAPEHLKALLELPTTATNSDSLPRTDGIIGSQGELIIPPKGL--LLVTHEPSF 172
+H PE + E + SL ++GS G P+G+ + +H P
Sbjct: 258 IHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPALVGSYG---TSPEGIGGYIHSHRPL- 313
Query: 173 VSTAPGPHIRGSTLRAFSVGDKEVDLLIPGTGRFKVQLGVNMPAQANHKLLDNECDSNEV 232
GP S + +++ E P +
Sbjct: 314 -----GPGEFESFIDVYAIRSAE-----------------GAPQK--------------- 336
Query: 233 ELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDPQL-ISVVEPKFYASRFINFLKK 291
EVY +MG+IDIL +Y+ KKK HA K+++ IS V P+ YA RF++F+
Sbjct: 337 ---EVY----FMGLIDILTQYDAKKKAAHAAKTVKHGAGAEISTVHPEQYAKRFLDFITN 389
Query: 292 KF 293
F
Sbjct: 390 IF 391
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 9 VKKHENTLITKFFGLHRITLRGGRKVRFVVMGNMFCTELRIHRSYDLKGSTVGR-CTDKD 67
V+ H NTL+ +F G++R+T+ G + VV N+F L +HR YDLKGSTV R +DK+
Sbjct: 172 VECHGNTLLPQFLGMYRLTV-DGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKE 230
Query: 68 KIKENTTLKDLDLSFEFQ---MDKLLREYLFKQISIDCEFLESQQIIDYSLLLGLH 120
K K+ T KD D E Q + + ++ +++ D EFL +I+DYSLL+G+H
Sbjct: 231 KAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIH 286
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 241 VLYMGIIDILQEYNVKKKIEHAFKSLQFDPQL-ISVVEPKFYASRFINFL 289
V +M IIDIL Y+ KKK HA K+++ IS V P+ Y+ RF F+
Sbjct: 362 VYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFM 411
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 7/122 (5%)
Query: 3 HEYYIHVKKHENTLITKFFGLHRITLRGGRKVRFVVMGNMFCTELRIHRSYDLKGSTVGR 62
H+Y + H TL+ +F G++R+ + G ++ +V N+F L ++R YDLKGSTV R
Sbjct: 152 HQYIVEC--HGITLLPQFLGMYRLNV-DGVEIYVIVTRNVFSHRLSVYRKYDLKGSTVAR 208
Query: 63 -CTDKDKIKENTTLKDLDLSFEFQ---MDKLLREYLFKQISIDCEFLESQQIIDYSLLLG 118
+DK+K KE TLKD D E Q +D ++ +++ D EFL +++DYSLL+G
Sbjct: 209 EASDKEKAKELPTLKDNDFINEGQKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVG 268
Query: 119 LH 120
+H
Sbjct: 269 IH 270
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 61 GRCTDKDKIKENTTLKDL---DLSFEFQMDKL-LREYLFKQISIDCE---FL----ESQQ 109
G+ + K K++ +++ K+L DL E + + L++ +F ++S C+ FL +
Sbjct: 359 GQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALN 418
Query: 110 IIDYS-------LLLGLHFRAPEHLKALLEL-------PTTATNSDSLPRTDGIIG 151
+ D + L++G HF +P H+ LLE+ PTT SL + G IG
Sbjct: 419 VDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG 474
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 61 GRCTDKDKIKENTTLKDL---DLSFEFQMDKL-LREYLFKQISIDCE---FL----ESQQ 109
G+ + K K++ +++ K+L DL E + + L++ +F ++S C+ FL +
Sbjct: 374 GQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALN 433
Query: 110 IIDYS-------LLLGLHFRAPEHLKALLEL-------PTTATNSDSLPRTDGIIG 151
+ D + L++G HF +P H+ LLE+ PTT SL + G IG
Sbjct: 434 VDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG 489
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 61 GRCTDKDKIKENTTLKDL---DLSFEFQMDKL-LREYLFKQISIDCE---FL----ESQQ 109
G+ + K K++ +++ K+L DL E + + L++ +F ++S C+ FL +
Sbjct: 374 GQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALN 433
Query: 110 IIDYS-------LLLGLHFRAPEHLKALLEL-------PTTATNSDSLPRTDGIIG 151
+ D + L++G HF +P H+ LLE+ PTT SL + G IG
Sbjct: 434 VDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG 489
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 61 GRCTDKDKIKENTTLKDL---DLSFEFQMDKL-LREYLFKQISIDCE---FL----ESQQ 109
G+ + K K++ +++ K+L DL E + + L++ +F ++S C+ FL +
Sbjct: 95 GQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALN 154
Query: 110 IIDYS-------LLLGLHFRAPEHLKALLEL-------PTTATNSDSLPRTDGIIG 151
+ D + L++G HF +P H+ LLE+ PTT SL + G IG
Sbjct: 155 VDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG 210
>pdb|1EVJ|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|C Chain C, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|D Chain D, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
Length = 352
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 189 FSV-GDKEVDLLIPGTGRFKVQLGVNMPAQANHKLL 223
FSV GDK V L+ P TG ++ + V P AN ++
Sbjct: 250 FSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMM 285
>pdb|1RYD|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYD|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYE|A Chain A, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|B Chain B, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|C Chain C, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|D Chain D, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
Length = 387
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 189 FSV-GDKEVDLLIPGTGRFKVQLGVNMPAQANHKLL 223
FSV GDK V L+ P TG ++ + V P AN ++
Sbjct: 285 FSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMM 320
>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase
pdb|1OFG|B Chain B, Glucose-Fructose Oxidoreductase
pdb|1OFG|C Chain C, Glucose-Fructose Oxidoreductase
pdb|1OFG|D Chain D, Glucose-Fructose Oxidoreductase
pdb|1OFG|E Chain E, Glucose-Fructose Oxidoreductase
pdb|1OFG|F Chain F, Glucose-Fructose Oxidoreductase
Length = 381
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 189 FSV-GDKEVDLLIPGTGRFKVQLGVNMPAQANHKLL 223
FSV GDK V L+ P TG ++ + V P AN ++
Sbjct: 279 FSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMM 314
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 261 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 320
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 321 AEVEAPPPQIY 331
>pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|C Chain C, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|D Chain D, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|E Chain E, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|F Chain F, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|G Chain G, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|H Chain H, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|I Chain I, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|J Chain J, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|K Chain K, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|L Chain L, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6C|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6C|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6B|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6B|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6A|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6A|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
Length = 433
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 189 FSV-GDKEVDLLIPGTGRFKVQLGVNMPAQANHKLL 223
FSV GDK V L+ P TG ++ + V P AN ++
Sbjct: 331 FSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMM 366
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 261 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 320
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 321 AEVEAPPPQIY 331
>pdb|2FKN|A Chain A, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|B Chain B, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|C Chain C, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|D Chain D, Crystal Structure Of Urocanase From Bacillus Subtilis
Length = 552
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 221 KLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDPQLI 273
++L N D E E D+++Y GI ++++ IEH+ K+L+ D L+
Sbjct: 28 RMLRNNLDPEVAEKPE--DLIVYGGIGKAARDWDAFHAIEHSLKTLKNDETLL 78
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 268 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 327
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 328 AEVEAPPPQIY 338
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 268 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 327
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 328 AEVEAPPPQIY 338
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 306 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 365
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 366 AEVEAPPPQIY 376
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 267 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 326
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 327 AEVEAPPPQIY 337
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 262 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 321
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 322 AEVEAPPPQIY 332
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 262 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 321
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 322 AEVEAPPPQIY 332
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 268 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 327
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 328 AEVEAPPPQIY 338
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 269 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 328
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 329 AEVEAPPPQIY 339
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 268 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 327
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 328 AEVEAPPPQIY 338
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 269 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 328
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 329 AEVEAPPPQIY 339
>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals
Inter- Domain Structural Plasticity
pdb|3OBY|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals
Inter- Domain Structural Plasticity
Length = 352
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 260 EHAFKSLQFDPQLISVVEPKFYASRFINFLKKKFPE 295
E A K FD + + V P F + F++FLK+++PE
Sbjct: 175 EVAAKLESFDFKYLIVAGPGFAKNDFLDFLKERYPE 210
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 211 GVNMPAQANHKLLDNECDSNEVELFEVYDVVLYMGIIDILQEYNVKKKIEHAFKSLQFDP 270
G+ P L + + N+++ + D++ M +ID + +V ++H + ++ +DP
Sbjct: 306 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 365
Query: 271 QLISVVEPKFY 281
+ P+ Y
Sbjct: 366 AEVEAPPPQIY 376
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 193 DKEVDLLIPGTGRFKVQLGVNMPAQANHKLLDNECDSNEV---ELFEVYDVVLYMGIIDI 249
DK V L+ G + K+ VN+ +H + D CD E L V D+ L G +
Sbjct: 297 DKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTLG- 355
Query: 250 LQEYNVKKKIEHAFKSLQFDPQ-LISVVEPKFYASRFINFLKKKFPEQ 296
++ KI + +L++DP+ +I+ + K F ++K+ P++
Sbjct: 356 ----RIRPKIPN---NLKYDPKAIIANLTCKKPDQHFKPYMKQHLPKR 396
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 58 STVGRCTDKDKIKENTTLKDLDLSFEF--QMDKLLREYLFKQISIDCEFLESQQIIDYSL 115
+T+ + D D + E +DL+ E ++++L L S+ ++++ S
Sbjct: 66 TTLEKVKDCDIVXE-AVFEDLNTKVEVLREVERLTNAPLCSNTSVISVDDIAERLDSPSR 124
Query: 116 LLGLHFRAPEHLKALLELPTTA-TNSDSLPRTDGIIGSQGELIIPPKGLLLVTH 168
LG+H+ P H+ L+E+ + T+S ++ +G + G+ ++ KG LV
Sbjct: 125 FLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQSLVNR 178
>pdb|1YM5|A Chain A, Crystal Structure Of Yhi9, The Yeast Member Of The
Phenazine Biosynthesis Phzf Enzyme Superfamily
Length = 300
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 59 TVGRCTDKDKIKENTTLKDLDLSFEFQMDKL-LREYL--FKQISIDCEFLESQQIIDYSL 115
T+G C + +NTT L + + + E L FK D E + S+ I DY
Sbjct: 84 TIGSCKAFLEFTKNTTATSLVQECKIGAVPITINEGLISFKAPMADYESISSEMIADYEK 143
Query: 116 LLGLHF--------RAPEHLKALLELPTTATNSD 141
+GL F PE + AL+E T N++
Sbjct: 144 AIGLKFIKPPALLHTGPEWIVALVEDAETCFNAN 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,890,608
Number of Sequences: 62578
Number of extensions: 373882
Number of successful extensions: 824
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 46
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)