Query 022453
Match_columns 297
No_of_seqs 172 out of 1312
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 9.6E-56 2.1E-60 401.8 30.3 284 2-296 25-308 (319)
2 TIGR00841 bass bile acid trans 100.0 1E-46 2.3E-51 345.1 29.7 273 10-296 3-279 (286)
3 TIGR00832 acr3 arsenical-resis 100.0 1.3E-46 2.9E-51 349.9 26.3 271 2-281 22-317 (328)
4 PF13593 DUF4137: SBF-like CPA 100.0 8.1E-41 1.7E-45 309.3 29.0 284 2-294 13-313 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 2.4E-31 5.2E-36 241.4 28.8 284 2-293 30-330 (342)
6 PF01758 SBF: Sodium Bile acid 100.0 6.2E-33 1.3E-37 239.2 17.4 181 19-203 1-186 (187)
7 KOG2718 Na+-bile acid cotransp 100.0 1.8E-28 3.8E-33 227.9 12.7 260 8-277 105-365 (371)
8 TIGR00946 2a69 he Auxin Efflux 99.0 4.5E-09 9.8E-14 97.9 11.3 110 16-133 211-320 (321)
9 KOG4821 Predicted Na+-dependen 98.9 2.4E-09 5.1E-14 92.0 4.9 168 21-190 59-244 (287)
10 PRK09903 putative transporter 98.9 1.1E-08 2.4E-13 95.1 9.8 120 5-133 191-310 (314)
11 COG0679 Predicted permeases [G 98.7 1.9E-07 4E-12 86.8 11.6 126 3-135 184-309 (311)
12 KOG2718 Na+-bile acid cotransp 98.7 1.7E-08 3.7E-13 94.7 4.4 248 22-287 50-309 (371)
13 PRK12460 2-keto-3-deoxyglucona 98.4 6.9E-06 1.5E-10 75.4 13.8 209 18-254 47-260 (312)
14 PF03812 KdgT: 2-keto-3-deoxyg 98.2 0.00048 1.1E-08 63.2 21.3 262 5-296 28-313 (314)
15 PF03547 Mem_trans: Membrane t 98.2 4.2E-06 9E-11 79.6 7.9 106 19-130 280-385 (385)
16 PF05145 AmoA: Putative ammoni 97.9 0.0092 2E-07 55.7 24.7 255 19-296 28-317 (318)
17 COG3180 AbrB Putative ammonia 97.9 0.0043 9.4E-08 58.1 21.9 106 21-135 63-169 (352)
18 TIGR00793 kdgT 2-keto-3-deoxyg 97.5 0.0014 2.9E-08 60.0 11.5 262 5-296 28-313 (314)
19 PRK05274 2-keto-3-deoxyglucona 97.4 0.0089 1.9E-07 55.9 16.4 209 18-254 49-268 (326)
20 TIGR00932 2a37 transporter, mo 96.6 0.52 1.1E-05 42.6 19.7 146 16-172 45-196 (273)
21 TIGR03082 Gneg_AbrB_dup membra 96.5 0.092 2E-06 43.8 12.9 106 18-132 49-155 (156)
22 PF03547 Mem_trans: Membrane t 96.4 0.094 2E-06 49.7 14.1 109 150-267 6-120 (385)
23 TIGR00946 2a69 he Auxin Efflux 96.3 0.069 1.5E-06 49.7 12.1 113 150-269 10-128 (321)
24 COG0475 KefB Kef-type K+ trans 96.2 1.2 2.6E-05 42.9 23.6 136 17-160 61-203 (397)
25 PLN03159 cation/H(+) antiporte 95.7 3.4 7.5E-05 43.7 24.9 29 16-44 106-134 (832)
26 PRK05326 potassium/proton anti 95.5 3.3 7.1E-05 41.7 24.7 30 16-45 61-90 (562)
27 PF03601 Cons_hypoth698: Conse 95.3 0.2 4.4E-06 46.5 10.8 108 151-263 27-136 (305)
28 PRK09903 putative transporter 95.3 0.55 1.2E-05 43.5 13.9 112 148-268 7-124 (314)
29 PF06826 Asp-Al_Ex: Predicted 95.2 0.39 8.5E-06 40.7 11.3 104 155-264 28-136 (169)
30 PF05145 AmoA: Putative ammoni 94.8 0.72 1.6E-05 43.1 13.1 107 19-134 207-314 (318)
31 PRK03562 glutathione-regulated 94.7 5.8 0.00013 40.5 25.0 78 18-103 60-139 (621)
32 PF04172 LrgB: LrgB-like famil 93.9 0.64 1.4E-05 41.0 10.0 90 37-133 69-158 (215)
33 PRK03659 glutathione-regulated 93.7 8.9 0.00019 39.0 25.1 82 18-107 60-143 (601)
34 PRK10711 hypothetical protein; 93.1 1.1 2.4E-05 39.9 10.2 86 38-133 81-169 (231)
35 TIGR00659 conserved hypothetic 93.0 1.1 2.4E-05 39.8 10.0 88 36-133 78-168 (226)
36 TIGR03136 malonate_biotin Na+- 92.9 8.7 0.00019 36.5 16.2 101 24-135 110-212 (399)
37 PRK04288 antiholin-like protei 92.9 1.2 2.5E-05 39.7 10.0 86 38-133 86-174 (232)
38 COG0679 Predicted permeases [G 92.3 3 6.4E-05 38.7 12.5 118 150-276 9-131 (311)
39 TIGR00698 conserved hypothetic 92.0 2.2 4.8E-05 40.1 11.2 105 154-263 35-142 (335)
40 PF03956 DUF340: Membrane prot 91.6 2.3 4.9E-05 36.8 10.1 133 154-294 2-136 (191)
41 PF03977 OAD_beta: Na+-transpo 91.6 12 0.00026 35.1 17.8 100 25-135 75-175 (360)
42 PRK10669 putative cation:proto 91.2 18 0.00039 36.3 20.8 53 18-77 61-113 (558)
43 COG2855 Predicted membrane pro 91.1 2.4 5.3E-05 39.7 10.3 82 154-237 41-123 (334)
44 COG3180 AbrB Putative ammonia 89.1 13 0.00027 35.3 13.4 105 20-133 241-346 (352)
45 PRK04972 putative transporter; 88.5 4.1 8.9E-05 41.1 10.5 58 205-268 471-529 (558)
46 TIGR03802 Asp_Ala_antiprt aspa 87.3 6.2 0.00013 39.9 10.9 68 19-91 61-129 (562)
47 COG1346 LrgB Putative effector 87.3 21 0.00045 31.7 13.2 96 193-295 78-174 (230)
48 COG1346 LrgB Putative effector 87.2 9.8 0.00021 33.7 10.7 88 36-133 81-171 (230)
49 TIGR01109 Na_pump_decarbB sodi 85.4 32 0.00069 32.3 13.5 100 25-135 69-175 (354)
50 PRK15086 ethanolamine utilizat 84.5 38 0.00082 32.2 16.6 129 36-170 33-194 (372)
51 PRK15475 oxaloacetate decarbox 84.4 39 0.00085 32.3 14.4 102 25-135 140-246 (433)
52 PRK15477 oxaloacetate decarbox 84.4 39 0.00085 32.3 14.4 102 25-135 140-246 (433)
53 PRK15476 oxaloacetate decarbox 84.3 39 0.00085 32.3 14.4 102 25-135 140-246 (433)
54 PF00999 Na_H_Exchanger: Sodiu 84.0 0.059 1.3E-06 51.0 -5.0 141 15-164 49-197 (380)
55 PF03601 Cons_hypoth698: Conse 83.3 39 0.00084 31.4 21.6 106 20-133 60-169 (305)
56 PRK03818 putative transporter; 82.1 12 0.00026 37.7 10.3 102 154-262 34-140 (552)
57 PRK04972 putative transporter; 81.3 17 0.00038 36.6 11.1 96 155-261 42-138 (558)
58 TIGR01625 YidE_YbjL_dupl AspT/ 81.1 9.9 0.00022 31.6 7.9 108 153-266 24-139 (154)
59 TIGR00844 c_cpa1 na(+)/h(+) an 81.0 79 0.0017 33.4 17.3 30 19-48 76-105 (810)
60 PF05684 DUF819: Protein of un 80.7 55 0.0012 31.4 27.3 109 17-132 56-167 (378)
61 PF04346 EutH: Ethanolamine ut 79.8 50 0.0011 31.3 12.7 131 36-171 32-194 (354)
62 PF04172 LrgB: LrgB-like famil 78.8 12 0.00027 32.9 8.1 94 194-296 66-162 (215)
63 TIGR00659 conserved hypothetic 78.6 19 0.00042 32.0 9.2 93 194-295 76-171 (226)
64 PRK10711 hypothetical protein; 78.4 49 0.0011 29.5 12.2 94 193-295 76-172 (231)
65 PRK03818 putative transporter; 77.6 18 0.00039 36.5 9.9 53 205-263 462-515 (552)
66 PRK12460 2-keto-3-deoxyglucona 76.5 16 0.00034 34.1 8.3 56 18-80 194-249 (312)
67 PRK03562 glutathione-regulated 75.9 40 0.00086 34.5 11.9 105 19-133 271-379 (621)
68 PF05982 DUF897: Domain of unk 75.2 74 0.0016 29.9 20.8 208 19-237 27-266 (327)
69 PRK04288 antiholin-like protei 73.4 68 0.0015 28.6 12.3 94 193-295 81-177 (232)
70 TIGR00831 a_cpa1 Na+/H+ antipo 73.0 1.1E+02 0.0023 30.7 22.0 27 18-44 52-78 (525)
71 PRK02830 Na(+)-translocating N 67.9 83 0.0018 27.4 11.6 80 110-189 41-128 (202)
72 PRK03659 glutathione-regulated 67.1 1.4E+02 0.0031 30.3 13.6 106 19-132 268-375 (601)
73 PRK01061 Na(+)-translocating N 65.4 1E+02 0.0023 27.7 11.7 79 110-188 48-136 (244)
74 PRK12456 Na(+)-translocating N 61.9 1.1E+02 0.0024 26.7 11.7 79 110-188 42-124 (199)
75 COG1883 OadB Na+-transporting 61.6 40 0.00088 31.1 7.5 100 25-135 90-190 (375)
76 TIGR00698 conserved hypothetic 56.2 1.8E+02 0.0039 27.4 19.5 107 20-134 66-176 (335)
77 TIGR01940 nqrE NADH:ubiquinone 56.1 1.4E+02 0.003 26.1 11.3 80 110-189 40-127 (200)
78 PF01943 Polysacc_synt: Polysa 53.8 1.4E+02 0.0031 25.5 11.6 61 110-172 7-69 (273)
79 PF03812 KdgT: 2-keto-3-deoxyg 53.2 59 0.0013 30.3 7.3 111 152-266 14-135 (314)
80 TIGR03802 Asp_Ala_antiprt aspa 51.2 1.5E+02 0.0032 30.0 10.5 13 251-263 449-461 (562)
81 COG2855 Predicted membrane pro 50.5 2.2E+02 0.0049 26.8 19.5 106 19-133 69-178 (334)
82 PRK05151 electron transport co 48.9 1.8E+02 0.0039 25.2 11.8 78 110-189 41-118 (193)
83 KOG2722 Predicted membrane pro 48.5 34 0.00074 32.6 5.0 72 213-288 82-162 (408)
84 TIGR00840 b_cpa1 sodium/hydrog 46.1 3.3E+02 0.0072 27.5 17.4 49 18-66 69-118 (559)
85 TIGR03082 Gneg_AbrB_dup membra 44.3 1.3E+02 0.0029 24.7 7.6 28 210-237 80-107 (156)
86 PF11120 DUF2636: Protein of u 44.1 35 0.00077 23.9 3.3 35 141-175 2-36 (62)
87 PF02508 Rnf-Nqr: Rnf-Nqr subu 43.9 2.1E+02 0.0045 24.6 11.6 34 155-188 82-115 (190)
88 COG0025 NhaP NhaP-type Na+/H+ 35.7 4.2E+02 0.0091 25.7 19.1 145 17-169 62-214 (429)
89 PF03956 DUF340: Membrane prot 34.7 3E+02 0.0064 23.7 13.0 110 15-132 23-137 (191)
90 TIGR01943 rnfA electron transp 32.9 3.2E+02 0.007 23.5 12.3 78 110-189 40-117 (190)
91 PRK09796 PTS system cellobiose 31.7 5E+02 0.011 25.7 10.4 25 152-176 219-243 (472)
92 COG2985 Predicted permease [Ge 30.6 5.3E+02 0.011 25.9 10.1 102 152-260 36-138 (544)
93 PRK10669 putative cation:proto 30.2 5.7E+02 0.012 25.6 13.3 103 20-132 280-386 (558)
94 TIGR00783 ccs citrate carrier 28.2 1.5E+02 0.0032 28.2 5.8 108 16-132 25-143 (347)
95 PF13955 Fst_toxin: Toxin Fst, 27.1 1.1E+02 0.0023 16.7 2.7 16 151-166 2-17 (21)
96 PLN03159 cation/H(+) antiporte 27.1 7.1E+02 0.015 26.6 11.3 109 19-133 325-436 (832)
97 TIGR00793 kdgT 2-keto-3-deoxyg 26.9 2.4E+02 0.0051 26.4 6.7 14 152-165 299-312 (314)
98 PF03253 UT: Urea transporter; 26.1 2.4E+02 0.0053 26.1 6.9 70 216-293 39-110 (301)
99 PRK09824 PTS system beta-gluco 26.1 6.5E+02 0.014 26.0 10.4 23 154-176 219-241 (627)
100 PF04284 DUF441: Protein of un 24.2 1.8E+02 0.0039 23.9 4.9 50 31-86 64-113 (140)
101 PRK05274 2-keto-3-deoxyglucona 23.3 3.1E+02 0.0068 25.7 7.1 21 150-170 299-319 (326)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=9.6e-56 Score=401.78 Aligned_cols=284 Identities=36% Similarity=0.599 Sum_probs=271.0
Q ss_pred eeeecCCccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHH
Q 022453 2 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIG 81 (297)
Q Consensus 2 ~~~~~P~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~ 81 (297)
++..+|+.+.|+ +.++++.++++||.+|++++.+|+++..||||.++.++.+||++||+++++++ +.+++||+.+
T Consensus 25 ~~~~~~~~~~~~-~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~----~~~~l~~~l~ 99 (319)
T COG0385 25 IAPIFPETFGWL-GSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLA----KLFPLPPELA 99 (319)
T ss_pred HHHhccccchhh-hHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----HHcCCCHHHH
Confidence 356788999999 58899999999999999999999999999999999999999999999999998 8899999999
Q ss_pred HHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHH
Q 022453 82 AGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGL 161 (297)
Q Consensus 82 ~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~ 161 (297)
.|+++++|||||+.||+||+++|||++ +|+++|.+||+++++++|+++.++.|+.+++|.++++.++++.+++|..+|+
T Consensus 100 ~Gl~ll~~~Pggv~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~ 178 (319)
T COG0385 100 VGLLLLGCCPGGVASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQ 178 (319)
T ss_pred HhHHheeeCCCchhHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccch
Q 022453 162 LLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 241 (297)
Q Consensus 162 ~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~ 241 (297)
.+|++.|++.++.+|.+++++..+++++++..++.+.+.+.+. +..+.....+++..++..||+.+|++|+|++|
T Consensus 179 ~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~-~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~---- 253 (319)
T COG0385 179 LLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNLLGLLLGYFGARLLGFDKAD---- 253 (319)
T ss_pred HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh----
Confidence 9999999999999999999999999999999999998887764 45677788999999999999999999999999
Q ss_pred hheeeeeecccchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022453 242 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 296 (297)
Q Consensus 242 ~~al~~~~g~rN~~la~~la~~~f~~p~~~lp~~~~~~~q~i~~~~~a~~~~~~~ 296 (297)
++|+++|.|+||.++|+++|..+|+||++++|.++|+++|++.+++++.+|+||.
T Consensus 254 ~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~ 308 (319)
T COG0385 254 EITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRI 308 (319)
T ss_pred eeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999776699999999999999999999999999973
No 2
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=1e-46 Score=345.08 Aligned_cols=273 Identities=30% Similarity=0.473 Sum_probs=252.8
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhc
Q 022453 10 FTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSC 89 (297)
Q Consensus 10 ~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~ 89 (297)
++++ +++..+.++++||.+|++++.+|+++..||||.+..+++.|++++|+++|+++ +.++++|+.+.|+++++|
T Consensus 3 ~~~~-~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~----~~~~l~~~~~~glvL~~~ 77 (286)
T TIGR00841 3 STNL-STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA----KVFKLPPELAVGVLIVGC 77 (286)
T ss_pred hhhH-HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHheee
Confidence 4556 46667779999999999999999999999999999999999999999999998 788999999999999999
Q ss_pred cCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCc----cccChHHHHHHHhHHHHHHHHHHHHHHH
Q 022453 90 VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKR----LPVDVKGMVSSILQIVVVPIAAGLLLNR 165 (297)
Q Consensus 90 ~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~----~~i~~~~i~~~l~~~vllPl~lG~~lr~ 165 (297)
|||+++|++||+++|||.+ ++..++.+||+++++++|+++.++.++. +++|..+++++ +..+++|+.+|+.+|+
T Consensus 78 ~P~~~~s~v~t~~~~gn~~-la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~ 155 (286)
T TIGR00841 78 CPGGTASNVFTYLLKGDMA-LSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKH 155 (286)
T ss_pred CCCchHHHHHHHHhCCCHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999987653 44999999999 9999999999999999
Q ss_pred hcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhhee
Q 022453 166 FFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 245 (297)
Q Consensus 166 ~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al 245 (297)
+.|+++++.+| .+.++.+.+.+++...++.+.+.+.+. .+.+.+.+.+++.++|.+||+.+|.+|++++| +||+
T Consensus 156 ~~p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~----~~t~ 229 (286)
T TIGR00841 156 KLPQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAKLAGLPWAR----CRTI 229 (286)
T ss_pred HhHHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhh----heee
Confidence 99999998888 899999999888888888888877664 56778889999999999999999999999888 9999
Q ss_pred eeeecccchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022453 246 SYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 296 (297)
Q Consensus 246 ~~~~g~rN~~la~~la~~~f~~p~~~lp~~~~~~~q~i~~~~~a~~~~~~~ 296 (297)
++|+|+||+++|++++.++|+ |+.++|+++|.++|++.+..++.+|+|+.
T Consensus 230 ~~~~g~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~ 279 (286)
T TIGR00841 230 SIEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH 279 (286)
T ss_pred eeeeecccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 88999999999999999999999988763
No 3
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=1.3e-46 Score=349.92 Aligned_cols=271 Identities=16% Similarity=0.223 Sum_probs=237.3
Q ss_pred eeeecCCccccchhh----h---HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhc-
Q 022453 2 LALVFPPSFTWFTAR----Y---YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSV- 73 (297)
Q Consensus 2 ~~~~~P~~~~~~~~~----~---~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~- 73 (297)
+|+.+|+.++|+... . ..+.++++||++|++++.||+++.+||||.+..++.+||+++|+++|+++ +.
T Consensus 22 ~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~----~l~ 97 (328)
T TIGR00832 22 LGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLA----WLF 97 (328)
T ss_pred HHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 478899998888321 1 22467789999999999999999999999999999999999999999998 54
Q ss_pred cCCchhHHHHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcC--------CccccChHHH
Q 022453 74 FGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGM 145 (297)
Q Consensus 74 ~~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~--------~~~~i~~~~i 145 (297)
++++|+++.|+++++|||||++||+||+++|||++ +|+++|.+|++++++++|++++++.| +++++|..++
T Consensus 98 ~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnva-lsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~ 176 (328)
T TIGR00832 98 LRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPE-YTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETI 176 (328)
T ss_pred cCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHH
Confidence 59999999999999999999999999999999999 99999999999999999999998876 3578999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccc-----hh-hhccccchHHHHHHHHHHHHHhHhchHHhhhhhH--HHHHHHHHHHH
Q 022453 146 VSSILQIVVVPIAAGLLLNRFFPRI-----CN-AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFG--LTILLLIITFH 217 (297)
Q Consensus 146 ~~~l~~~vllPl~lG~~lr~~~~~~-----~~-~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~--~~~~~~~~~l~ 217 (297)
+++++.++++|+++|+.+|++.||+ .+ |.+|..+..+.+++.+++...++.|++.+.+..+ ..+..+.++++
T Consensus 177 ~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~ 256 (328)
T TIGR00832 177 AKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYF 256 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 9999999999999999999999854 33 6777888888888888888888999888876422 23344677899
Q ss_pred HHHHHHHHHHHHhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCCcchhhHHHHHH-HH
Q 022453 218 LSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV-IM 281 (297)
Q Consensus 218 ~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~~~lp~~~~~~-~q 281 (297)
..++.+||+++|.+|++++| |||+++|+|+||.++|+.+|.++|++++.+.++++|.. +|
T Consensus 257 ~~~~~lg~~~~r~~~l~~~~----~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e 317 (328)
T TIGR00832 257 YIMFFLTFALAKKLGLPYSI----TAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGPLIE 317 (328)
T ss_pred HHHHHHHHHHHHHhCcChhh----hhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhe
Confidence 99999999999999999999 99999999999999999999999987666666666654 44
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=8.1e-41 Score=309.28 Aligned_cols=284 Identities=23% Similarity=0.369 Sum_probs=252.4
Q ss_pred eeeecCCcccc---ch-hhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc--C
Q 022453 2 LALVFPPSFTW---FT-ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVF--G 75 (297)
Q Consensus 2 ~~~~~P~~~~~---~~-~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~--~ 75 (297)
+|+++|+.+.. .+ |....+.++.++|..|++++.||+++..||+|.+..++..+|+++|++++++. .++ .
T Consensus 13 la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~----~l~~~~ 88 (313)
T PF13593_consen 13 LAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS----RLFPAF 88 (313)
T ss_pred HHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHhhcc
Confidence 57788987653 32 34567889999999999999999999999999999999999999999999997 555 3
Q ss_pred CchhHHHHHHHHhccCchhhHH-HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHc-CCccccChHHHHHHHhHHH
Q 022453 76 LPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-GKRLPVDVKGMVSSILQIV 153 (297)
Q Consensus 76 l~~~~~~gl~l~~~~P~~~~s~-~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~-~~~~~i~~~~i~~~l~~~v 153 (297)
.+++.+.|+++++|+|++..|+ +||+.+|||.+ +|+.++.++|+++++++|+++.++. +++.++|..+++.++...+
T Consensus 89 ~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a-~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~v 167 (313)
T PF13593_consen 89 LPPELALGLLILACLPTTVSSSVVLTRLAGGNVA-LALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTV 167 (313)
T ss_pred CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHH-HHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 6899999999999999998887 59999999999 9999999999999999999999998 6789999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhhhccccchHHHHHHHHHHHHHhHhch-HHhhhhhH----HHHHHHHHHHHHHHHHHHHHHH
Q 022453 154 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFG----LTILLLIITFHLSAFVAGYVVT 228 (297)
Q Consensus 154 llPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~-~~i~~~~~----~~~~~~~~~l~~~~~~~g~~l~ 228 (297)
++|+++|+.+|++.+++.+|.++..+.++...++++++..++.+. +...+..+ ..+....+.++...+.++|..+
T Consensus 168 llP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 247 (313)
T PF13593_consen 168 LLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGWLAA 247 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887652 22222111 2334456778888999999999
Q ss_pred HhhccCcccccchhheeeeeecccchHHHHHHHHHhCCC-C---cchhhHHHHHHHHHHHHHHHHHHHhh
Q 022453 229 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD-P---LVSVPPAISTVIMSLMGFFLVMLWAK 294 (297)
Q Consensus 229 ~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~-p---~~~lp~~~~~~~q~i~~~~~a~~~~~ 294 (297)
|.+|++++| ++++.|++++||.+++++++...|++ | ...+|.++||..|.++++.++.+|+|
T Consensus 248 r~~~~~~~d----~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r 313 (313)
T PF13593_consen 248 RLLGFSRPD----RIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR 313 (313)
T ss_pred hhcCCChhh----EEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999 99999999999999999999999974 3 57899999999999999999999987
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-31 Score=241.43 Aligned_cols=284 Identities=15% Similarity=0.222 Sum_probs=247.3
Q ss_pred eeeecCCccccch-------hhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022453 2 LALVFPPSFTWFT-------ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVF 74 (297)
Q Consensus 2 ~~~~~P~~~~~~~-------~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~ 74 (297)
+|..+|+.++.+. +..+++.+..||+.+.+++|.|++++..|++|.+..++..|+++.|++.|+++ +.++
T Consensus 30 lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~la---~~fl 106 (342)
T COG0798 30 LGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFALA---WFFL 106 (342)
T ss_pred HHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 5778888544432 24467899999999999999999999999999999999999999999999998 3556
Q ss_pred CCchhHHHHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC-ccccChHHHHHHHhHHH
Q 022453 75 GLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK-RLPVDVKGMVSSILQIV 153 (297)
Q Consensus 75 ~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~-~~~i~~~~i~~~l~~~v 153 (297)
++.|++.+|+++++.+||..++.+|+++++||.+ ++..+++++.++++++.|.+..++.+. ++++|++++.++++..+
T Consensus 107 ~~~pey~~GlILlglApC~aMVivw~~La~Gd~~-~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl 185 (342)
T COG0798 107 PDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRE-LTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYL 185 (342)
T ss_pred CCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHh-hhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 999999999999999999999999875 48999999999999999
Q ss_pred HHHHHHHHHHHHhcccc------hhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhH--HHHHHHHHHHHHHHHHHHH
Q 022453 154 VVPIAAGLLLNRFFPRI------CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFG--LTILLLIITFHLSAFVAGY 225 (297)
Q Consensus 154 llPl~lG~~lr~~~~~~------~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~--~~~~~~~~~l~~~~~~~g~ 225 (297)
.+|+++|++.|+...|+ .+|..|..++++..++.+.+...++.+.|.+.+++. ..+.....+.....+.++|
T Consensus 186 ~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~~ 265 (342)
T COG0798 186 GIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFISY 265 (342)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875432 367888889999999999999999999999988742 1334455677788889999
Q ss_pred HHHHhhccCcccccchhheeeeeecccchHHHHHHHHHhCC-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 022453 226 VVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWA 293 (297)
Q Consensus 226 ~l~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~-~p~~~lp~~~~~~~q~i~~~~~a~~~~ 293 (297)
+.+|..|++.+| ++++++.++.+|..+|+++|.+.|+ +..+++.+++..++|..+--.++..++
T Consensus 266 ~i~k~lgl~y~~----~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vigpLvEVpvml~lV~v~~ 330 (342)
T COG0798 266 FIAKALGLPYED----AAALVFTGASNNFELAIAVAIALFGLTSGAALATVVGPLVEVPVMLGLVKVAL 330 (342)
T ss_pred HHHHHhCCChhh----hhceeeeeccccHHHHHHHHHHhcCccccchhhhhccchhhHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999998 667788788888888776665555444
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=100.00 E-value=6.2e-33 Score=239.24 Aligned_cols=181 Identities=30% Similarity=0.555 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 98 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~ 98 (297)
++.++++||++|++++.||+++..||||.+..++++|++++|+++|++++ .+++++|+++.|+++++|||||+.||+
T Consensus 1 ~i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~---~~~~~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 1 PILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAW---LLLPLSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp --HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH----HHTT--HHHHHHHHHHHHS-B-THHHH
T ss_pred ChhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHhcCCcHHHHHH
Confidence 35789999999999999999999999999999999999999999999973 778999999999999999999999999
Q ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---hHHHHHHHhHHHHHHHHHHHHHHHhcc--cchhh
Q 022453 99 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD---VKGMVSSILQIVVVPIAAGLLLNRFFP--RICNA 173 (297)
Q Consensus 99 ~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~---~~~i~~~l~~~vllPl~lG~~lr~~~~--~~~~~ 173 (297)
||+++|||.+ +|+++|.++++++++++|+++.++.+...+.| ..++..+++..+++|+++|+++|++.| +.+++
T Consensus 78 ~t~l~~Gd~~-ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~ 156 (187)
T PF01758_consen 78 FTYLAGGDVA-LSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARR 156 (187)
T ss_dssp HHHHTT--HH-HHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HH
T ss_pred HHHHhCCCcc-cccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHH
Confidence 9999999999 99999999999999999999999988776666 899999999999999999999999999 88899
Q ss_pred hccccchHHHHHHHHHHHHHhHhchHHhhh
Q 022453 174 IRPFLPPLSVLVTACCVGAPLAINIESVMS 203 (297)
Q Consensus 174 ~~~~~~~~s~~~llliv~~~~~~~~~~i~~ 203 (297)
++|..+.++..++++++...++.|.+.+.+
T Consensus 157 ~~~~~~~~s~~~l~~~i~~~~~~~~~~i~~ 186 (187)
T PF01758_consen 157 LKPFLKPLSFILLLLIIVLIFASNASVIAS 186 (187)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcccccC
Confidence 999999999999999998888988887654
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.8e-28 Score=227.91 Aligned_cols=260 Identities=43% Similarity=0.688 Sum_probs=227.8
Q ss_pred CccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH
Q 022453 8 PSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLV 87 (297)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~ 87 (297)
..+.|+...+.++.+...|+++|++.|.+|+++.++||+.+..|++.|++++|+.+|.+. ..+.++...+.|.+++
T Consensus 105 ~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~----~~~~lP~~~~ag~~Lv 180 (371)
T KOG2718|consen 105 LAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLS----KVLLLPAALAAGLLLV 180 (371)
T ss_pred ccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhh----hHhhCCccccceeEEE
Confidence 667888767778899999999999999999999999999999999999999999999987 7777777776788888
Q ss_pred hccCchhhHH-HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHHHHHh
Q 022453 88 SCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRF 166 (297)
Q Consensus 88 ~~~P~~~~s~-~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~ 166 (297)
.|++++..++ +++..-+||.. +++.+|.++|+.+++++|++-..+.+..++.|...+..+.+..+.+|+.+|.++|++
T Consensus 181 tc~~p~g~~~~~~~~~~~g~v~-lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv~~pl~lG~lL~~~ 259 (371)
T KOG2718|consen 181 TCVSPGGGGNYLTSKRLPGDVT-LSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVVGLPLALGLLLNKW 259 (371)
T ss_pred EeccCCcchhhheeecCCcchh-hHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHhHHHHHHHHHhccc
Confidence 8877766665 55656699999 999999999999999999999999888888888888878889999999999999999
Q ss_pred cccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheee
Q 022453 167 FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS 246 (297)
Q Consensus 167 ~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~ 246 (297)
+||..+.+++..+.++.+...+.+......|.+.+.. .++.++..+..+++.+|..||+.++..+ ++ + +++||++
T Consensus 260 ~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~~~~~-~~-~--a~~~tis 334 (371)
T KOG2718|consen 260 FPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLSFSPL-DD-V--ATARTIS 334 (371)
T ss_pred CccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ch-h--hhhcchH
Confidence 9999999999999999999999888777888887777 6888999999999999999999974321 22 2 3489999
Q ss_pred eeecccchHHHHHHHHHhCCCCcchhhHHHH
Q 022453 247 YETGMQSSLLALALANRFFQDPLVSVPPAIS 277 (297)
Q Consensus 247 ~~~g~rN~~la~~la~~~f~~p~~~lp~~~~ 277 (297)
+|+|+||..++...++..++||....|+..-
T Consensus 335 ie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s 365 (371)
T KOG2718|consen 335 IETGMQNSLLALALATKHLQDPLVVVPPATS 365 (371)
T ss_pred HHhccchhHHHHHHhhcccCCceeeeccchh
Confidence 9999999999999999999988776665543
No 8
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=98.97 E-value=4.5e-09 Score=97.91 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhh
Q 022453 16 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 95 (297)
Q Consensus 16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~ 95 (297)
..-.....+.|+..|.+++.++.+ ++.|........++++.|++++++. ..++++++.....++++++|++..
T Consensus 211 ~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~P~i~~~~~----~~~~l~~~~~~~~vl~aa~P~a~~ 283 (321)
T TIGR00946 211 ILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQPAVMAGIS----KLIGLRGLELSVAILQAALPGGAV 283 (321)
T ss_pred HHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHHHHHHHHHH----HHhCCChHHHHHHHHHHcCChhhH
Confidence 334567888999999998877654 3556678888899999999999997 889999999999999999999999
Q ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 96 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 96 s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll 133 (297)
+.++++..|+|.+ .+...+.+||+++.+++|++..++
T Consensus 284 ~~i~A~~y~~~~~-~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 284 AAVLATEYEVDVE-LASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999998864
No 9
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=98.87 E-value=2.4e-09 Score=91.99 Aligned_cols=168 Identities=14% Similarity=0.240 Sum_probs=122.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH-H
Q 022453 21 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-A 99 (297)
Q Consensus 21 ~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~-~ 99 (297)
..+-+++..|++++.|++....+++|..++++...+.+.|-..|.+.+. ...-+.|+++..|+.+.+|+|++.+|++ .
T Consensus 59 ~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~-~~~~~i~~wLl~GL~~~~CMPttvSS~ViL 137 (287)
T KOG4821|consen 59 CVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCA-VKAAKIDDWLLIGLILTACMPTTVSSNVIL 137 (287)
T ss_pred EEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHH-HhCcchhHHHHhhheeeeecCCccccceee
Confidence 4556678999999999999999999999999999999999999988630 1222467899999999999999999997 7
Q ss_pred HHHcCCCCcchHHH-HHHHHHHHHHHHHHHHHHHHcCC-c-----------cccChHHHHHHHhHHHHHHHHHHHHHHHh
Q 022453 100 TFLTDPPLAPLSIV-MTSLSTATAVFVTPLLSLLLIGK-R-----------LPVDVKGMVSSILQIVVVPIAAGLLLNRF 166 (297)
Q Consensus 100 t~~~~Gd~~~ls~~-lt~~st~l~~~~~Pl~~~ll~~~-~-----------~~i~~~~i~~~l~~~vllPl~lG~~lr~~ 166 (297)
|..+|||.+ .... ....+.+.+....|-....++.+ . +-.-+.-++.+....+++|...|...+..
T Consensus 138 T~~aGGNa~-A~~v~S~f~g~L~~~~i~~~l~q~LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 216 (287)
T KOG4821|consen 138 TTNAGGNAS-ALCVCSVFIGNLLGAFITPALVQMLLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNC 216 (287)
T ss_pred eeccCccHH-HHHHHHHHHHHHhhhHHHHHHHHHHHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccc
Confidence 999999997 4433 33355666666666666655421 1 11223445677778899999999999999
Q ss_pred cccchh----hhccccchHHHHHHHHHH
Q 022453 167 FPRICN----AIRPFLPPLSVLVTACCV 190 (297)
Q Consensus 167 ~~~~~~----~~~~~~~~~s~~~llliv 190 (297)
+|+-+. ..++.--++.....+.+.
T Consensus 217 ~~~~~~~~~~~~k~~~i~i~~~~~l~~~ 244 (287)
T KOG4821|consen 217 FPKGTAYYLGFLKKYHIKIGSYMLLLIM 244 (287)
T ss_pred cCCceeEEeeccccccchhhHHHHHHHH
Confidence 887543 233333334444444443
No 10
>PRK09903 putative transporter YfdV; Provisional
Probab=98.86 E-value=1.1e-08 Score=95.07 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=98.6
Q ss_pred ecCCccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHH
Q 022453 5 VFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGI 84 (297)
Q Consensus 5 ~~P~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl 84 (297)
-.|+..+...+..-.....+.|+..|.++...+++ ++ +....+.+.++++.|++.+++. ..++++++.....
T Consensus 191 ~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~~P~i~~~~~----~~~~l~~~~~~v~ 262 (314)
T PRK09903 191 KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLILMPLALLLVG----MACHLNSEHLQMM 262 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHHHHHHHHHHH----HHcCCCcHHHHHH
Confidence 34554333322333567888899999998777643 22 3456777889999999999886 7789999999999
Q ss_pred HHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 85 MLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 85 ~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll 133 (297)
++++++|++..+.++++..|+|.+ ++.....+||+++.+++|++++++
T Consensus 263 vl~aa~P~a~~~~i~A~~y~~~~~-~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 263 VLAGALPPAFSGIIIASRFNVYTR-TGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHcccHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999865
No 11
>COG0679 Predicted permeases [General function prediction only]
Probab=98.68 E-value=1.9e-07 Score=86.84 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=102.5
Q ss_pred eeecCCccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHH
Q 022453 3 ALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGA 82 (297)
Q Consensus 3 ~~~~P~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~ 82 (297)
++-.|+......+..-.....+.|+..|.+++.++.++ .+++........++++.|+.++... +.++++++...
T Consensus 184 ~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~kll~~Pl~~~~~~----~~~~l~~~~~~ 257 (311)
T COG0679 184 GISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLKLLLAPLVALLVA----KLLGLSGLALQ 257 (311)
T ss_pred CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHHHHHHHHHHHHHH----HHcCCChHHHH
Confidence 34455533333223345678899999999999944432 3345566667779999999999998 89999999999
Q ss_pred HHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022453 83 GIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG 135 (297)
Q Consensus 83 gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~ 135 (297)
.+++++++|++..+.++++..|+|.+ ++.....+||.++.+++|.+..++.+
T Consensus 258 v~vl~~a~P~A~~~~v~a~~~~~~~~-laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 258 VLVLLSAMPTAVNAYVLARQYGGDPR-LAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHhhCcHHhHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 99999999999999999999887643
No 12
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.7e-08 Score=94.66 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=175.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHH
Q 022453 22 LGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFV-VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT 100 (297)
Q Consensus 22 l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v-~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t 100 (297)
+...|+..|++.+.++++++.++++.+......++- ++|...+... ..+..++..+.......|+|++..+|.++
T Consensus 50 L~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~----v~~~~~~~~~~t~l~~~~~~~gl~~~~ls 125 (371)
T KOG2718|consen 50 LNFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLK----VLFLLDPLLAFTWLVTGCFPPGLLSNMLS 125 (371)
T ss_pred HhHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHH----HHhhcCCcccceEEEeCccccHHHHHHHH
Confidence 568999999999999999999999888888889999 9999999997 77888888899999999999999999999
Q ss_pred HHcCCCCcchHHHHHHHHHHHHHHHHH-HHHHH----HcCCccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhc
Q 022453 101 FLTDPPLAPLSIVMTSLSTATAVFVTP-LLSLL----LIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIR 175 (297)
Q Consensus 101 ~~~~Gd~~~ls~~lt~~st~l~~~~~P-l~~~l----l~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~ 175 (297)
.-.++|.+ ....++.-.+.+.+..+| +++.= +.+.....|...-..-++..-..|...|..+++.+++-...+.
T Consensus 126 ~g~~~~~~-~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~ls 204 (371)
T KOG2718|consen 126 FGIKLDMD-LFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLS 204 (371)
T ss_pred HhcCccHH-HHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhH
Confidence 99999999 999999888888887777 22221 1222333333221223467788899999999998877666677
Q ss_pred cccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHhhccCcccccchhheeeeeecccc
Q 022453 176 PFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA--FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQS 253 (297)
Q Consensus 176 ~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN 253 (297)
+.+..++.++.+.+.-.......+.+.......+.. -.+...+ +.+|+++.+.+ . +++..++.++||
T Consensus 205 ilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~--s~~~vv~~pl~lG~lL~~~~-----~----k~t~~i~~~~~~ 273 (371)
T KOG2718|consen 205 ILMTTISTVLAVILTPLLSILLGRALIPVDALGVIA--SILQVVGLPLALGLLLNKWF-----P----KRTVAIEPGLPP 273 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhh--hhhHHhHHHHHHHHHhcccC-----c----cceeeeecCCCc
Confidence 766666665555443222222222222211222222 3344444 77888777432 2 689999999999
Q ss_pred hHHHHHHHHHhCCCCc----chhhHHHHHHHHHHHHHH
Q 022453 254 SLLALALANRFFQDPL----VSVPPAISTVIMSLMGFF 287 (297)
Q Consensus 254 ~~la~~la~~~f~~p~----~~lp~~~~~~~q~i~~~~ 287 (297)
.++...+..-.|+ ++ .... ..|.++|...+..
T Consensus 274 vsv~~t~l~~~~p-~~~n~~~~~~-~~~~i~~~~~~l~ 309 (371)
T KOG2718|consen 274 VSVCLTILCLAFP-PGENGYLFLF-FGYQILLLGAALP 309 (371)
T ss_pred hHHHhhhhhhcCC-hhhhhHHHHH-HHHHHHHHHHHHH
Confidence 9999888877776 33 2222 4566666444333
No 13
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.40 E-value=6.9e-06 Score=75.41 Aligned_cols=209 Identities=16% Similarity=0.223 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHH-HHHHHhccCchhhH
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGA-GIMLVSCVSGAQLS 96 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~-gl~l~~~~P~~~~s 96 (297)
..+.+++.+|++|.+++.|+..+.+||-..+ +..++++--++++.++ ++++.|.-.-+ .+.+++++-..+-+
T Consensus 47 ~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~~~K~~~~~~~g~~~~----~~~g~~g~~Gls~laiiaa~~~~Ng~ 119 (312)
T PRK12460 47 AAPLLGAFLLCMGAQISLKAAPQALLKGGVL---TITKLGVAIVIGLLVG----KFFGAEGIFGLSGLAIVAAMSNSNGG 119 (312)
T ss_pred hHHHHHHHHHHhcCeeeccccchhhhhhhhh---hhHHHHHHHHHHHHHH----HHcCcccccchHHHHHHHHHhcCcHH
Confidence 3578999999999999999999888875432 3457777777888887 78886542211 12223333322222
Q ss_pred H--HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchh
Q 022453 97 N--YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN 172 (297)
Q Consensus 97 ~--~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~--~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~ 172 (297)
- ..+...|-+.+--+.. +.++---|+...+-.+. -.++|+..+ .-.++|+++|+.++...+++.+
T Consensus 120 ly~al~~~yG~~~d~gA~~------~~sl~~GPf~tm~aLga~gLA~ip~~~l-----v~lilpILiGmilGNld~~~~~ 188 (312)
T PRK12460 120 LYAALMGEFGDERDVGAIS------ILSLNDGPFFTMLALGAAGLANIPIMAL-----VAALLPLVLGMILGNLDPDMRK 188 (312)
T ss_pred HHHHHHHHcCCHhhhhHHh------hhhhccCcHHHHHHHHHHHHhcCChHHH-----HHHHHHHHHHHHHhccchhhHH
Confidence 1 1233333333302222 22333334444333332 124554432 3489999999999998877777
Q ss_pred hhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeeccc
Q 022453 173 AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQ 252 (297)
Q Consensus 173 ~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~r 252 (297)
..++-.+. ...+.++..-...|.+++.+ .|+..++..++.....+..+|+++|++|.++ +.+....+..-
T Consensus 189 ~l~~Gi~f---~I~f~~f~LG~~lnl~~I~~-~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~------~~g~li~stAG 258 (312)
T PRK12460 189 FLTKGGPL---LIPFFAFALGAGINLSMLLQ-AGLAGILLGVLVTIVTGFFNIFADRLVGGTG------IAGAAASSTAG 258 (312)
T ss_pred HHhccceE---eHHHHHHHhcCCeeHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHhCCCh------hHHHHHHHHhh
Confidence 77776554 11122222234456677766 3666666666677788899999999985444 33444443344
Q ss_pred ch
Q 022453 253 SS 254 (297)
Q Consensus 253 N~ 254 (297)
|.
T Consensus 259 nA 260 (312)
T PRK12460 259 NA 260 (312)
T ss_pred HH
Confidence 54
No 14
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.22 E-value=0.00048 Score=63.18 Aligned_cols=262 Identities=16% Similarity=0.280 Sum_probs=144.8
Q ss_pred ecCCccccc---hhh---hHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch
Q 022453 5 VFPPSFTWF---TAR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 78 (297)
Q Consensus 5 ~~P~~~~~~---~~~---~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~ 78 (297)
++|+.++.. .+. -..+.+++.+|++|.+++.|+..+.+||-..+ ++.++++--++++.+. ++++.+.
T Consensus 28 f~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~l---l~~K~~~~~~lgl~~~----~~fg~~G 100 (314)
T PF03812_consen 28 FFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVL---LLVKFIIGALLGLLVG----KFFGPEG 100 (314)
T ss_pred cCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHH---HHHHHHHHHHHHHHHH----HHcCccc
Confidence 678776532 111 13568999999999999999999999875433 3567888778888887 7787653
Q ss_pred h---HHH---HHHHHhccCchhhHH--HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccChHHHHHH
Q 022453 79 P---IGA---GIMLVSCVSGAQLSN--YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSS 148 (297)
Q Consensus 79 ~---~~~---gl~l~~~~P~~~~s~--~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~--~~~i~~~~i~~~ 148 (297)
- ... .+.+++++-..+-+- ..+...|-+.+ .-.. .++++..-|+.-.+.+|. ..++|+..+
T Consensus 101 i~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D--~gA~----~i~sl~~GPf~tMl~LG~sG~a~ip~~~l--- 171 (314)
T PF03812_consen 101 IQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED--VGAF----SILSLNDGPFFTMLALGASGLANIPWMSL--- 171 (314)
T ss_pred cccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH--hHHH----HHHHhhhhHHHHHHHHhhccccCCCHHHH---
Confidence 1 112 233444444443332 23333333333 2222 344455556665555553 356787654
Q ss_pred HhHHHHHHHHHHHHHHHhcccchhhhccccchHHHHHHHHH-HHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022453 149 ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACC-VGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV 227 (297)
Q Consensus 149 l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llli-v~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l 227 (297)
+-.++|+++|+.+-..-|++.|.++|-.+.+ +-+. ...--..|.+.+.+. |..-++..++...+.....|+.
T Consensus 172 --v~~llP~iiG~iLGNLD~~~r~fl~~~~~~l----IPF~~f~lGa~inl~~i~~a-Gl~GIlLgv~~~~vtg~~~~~~ 244 (314)
T PF03812_consen 172 --VAALLPIIIGMILGNLDPDFRKFLAPGVPIL----IPFFGFALGAGINLSNIIKA-GLSGILLGVIVVVVTGIPLYLA 244 (314)
T ss_pred --HHHHHHHHHHHHHhcCCHHHHHHHhcCCCee----eehhhhhhcCCCCHHHHHHh-CcchHHHHHHHHHHHhHHHHHH
Confidence 5788999999999988887776666544321 1111 011123455556553 3322222333333444455667
Q ss_pred HHhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCCc----c--hh-hHHHHHHHHHHHHHHHHHHHhhcc
Q 022453 228 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPL----V--SV-PPAISTVIMSLMGFFLVMLWAKKS 296 (297)
Q Consensus 228 ~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~----~--~l-p~~~~~~~q~i~~~~~a~~~~~~~ 296 (297)
-|..+ +++. ....+..+..-|. ++.+-+.... ||+ + +. =++...++-.+...++..+|.||-
T Consensus 245 dr~i~-~~~g----~aG~A~sstAGna-vatPaaiA~~-dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr~ 313 (314)
T PF03812_consen 245 DRLIL-KGNG----VAGAAISSTAGNA-VATPAAIAAA-DPSFAPYAASATAQVAAAVIVTAILTPILTSWWAKRF 313 (314)
T ss_pred HHHHc-CCCC----ceeehHHhhhhhh-hhhhHHHHHh-ChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77642 2222 3455555555554 3333322222 222 1 11 122344566777777888888873
No 15
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.20 E-value=4.2e-06 Score=79.61 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 98 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~ 98 (297)
.....+.||.+|.++..++.+... +.+......+.+++++|++++++. ..++++++....+++.+++|++..+.+
T Consensus 280 ~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rlii~P~i~~~~~----~~~~l~~~~~~~~~~~~~~P~a~~~~~ 354 (385)
T PF03547_consen 280 AAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRLIILPLIGIGIV----FLLGLDGDMARVLILQAAMPTAINSFV 354 (385)
T ss_pred hhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHhccCCchHHHHH
Confidence 346888889999888766543322 233345568889999999999997 888999999999999999999999999
Q ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 022453 99 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS 130 (297)
Q Consensus 99 ~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~ 130 (297)
++...|.|.+ .+......+++++++++|+|+
T Consensus 355 ~a~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 355 IASLYGLDEE-EASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999 999999999999999999973
No 16
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.94 E-value=0.0092 Score=55.72 Aligned_cols=255 Identities=16% Similarity=0.166 Sum_probs=149.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH-
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN- 97 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~- 97 (297)
.....++=..+|.+++.+.+.+..+++.......+......-..+|.+. +..+.|..-+ +.++.|||.+.-
T Consensus 28 ~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----r~~~~d~~TA----~~~~~PGg~s~m~ 99 (318)
T PF05145_consen 28 NAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLR----RISGLDRATA----FFASMPGGLSEMV 99 (318)
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCChhHH----HHHcCCccHHHHH
Confidence 4456666678999999999999888887777777777777777788886 6667665433 569999998764
Q ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC----ccccCh----HHHHHHHhHHHHHHHHHHHHHHHh-cc
Q 022453 98 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK----RLPVDV----KGMVSSILQIVVVPIAAGLLLNRF-FP 168 (297)
Q Consensus 98 ~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~----~~~i~~----~~i~~~l~~~vllPl~lG~~lr~~-~~ 168 (297)
.+++-.|+|.. .-.....+=-++-+..+|+...+..+. +.+.+. .+ ..++......-...|.+.|+. .|
T Consensus 100 ~la~~~gad~~-~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~g~~l~~~l~iP 177 (318)
T PF05145_consen 100 ALAEEYGADTR-RVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMS-WLWLALLALAALAGGLLARRLRIP 177 (318)
T ss_pred HHHHHcCCChh-hhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCC-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 68999999999 999999998999999999999887653 111110 11 122344445555566666655 34
Q ss_pred cc--------------hhhhccccch-HHHHHHHHHHHHHhHh--chHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 169 RI--------------CNAIRPFLPP-LSVLVTACCVGAPLAI--NIESVMSP--FGLTILLLIITFHLSAFVAGYVVTG 229 (297)
Q Consensus 169 ~~--------------~~~~~~~~~~-~s~~~llliv~~~~~~--~~~~i~~~--~~~~~~~~~~~l~~~~~~~g~~l~~ 229 (297)
.- ....+...+. +.....++ +...++. +.+.+.+. .....+.....+...+...+|.+++
T Consensus 178 a~~llGpml~~a~~~~~~~~~~~~P~~l~~~aqv~-iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~ 256 (318)
T PF05145_consen 178 APWLLGPMLVSAILNLFGGPSFSLPPWLVNAAQVL-IGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSR 256 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111111211 11121111 2222222 22222221 1122334455666778889999999
Q ss_pred hhccCcccccchhheeeeeecccchHHHHH--HHHHhCCCCcchhhHHHHHHH----HHHHHHHHHHHHhhcc
Q 022453 230 LAFAEAHDVKALQRTLSYETGMQSSLLALA--LANRFFQDPLVSVPPAISTVI----MSLMGFFLVMLWAKKS 296 (297)
Q Consensus 230 ~~~l~~~~~~~~~~al~~~~g~rN~~la~~--la~~~f~~p~~~lp~~~~~~~----q~i~~~~~a~~~~~~~ 296 (297)
..+.|..+ .-+++.=| ++.-. +|.. .+ .+..+ ++.+|+. -.+....++.+++|||
T Consensus 257 ~~~~~~~t-----~~La~aPG----Gl~eM~l~A~~-l~-~d~~~-V~~~q~~Rl~~v~~~~p~~~r~~~r~~ 317 (318)
T PF05145_consen 257 LTGIDFLT-----ALLATAPG----GLAEMALIALA-LG-ADVAF-VAAHQVVRLLFVLLLAPFIARWLRRRR 317 (318)
T ss_pred HHCCCHHH-----HHHHhCCc----cHHHHHHHHHH-cC-CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88666544 22333322 23222 2222 32 23222 3445554 3445566677888876
No 17
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.93 E-value=0.0043 Score=58.07 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH-HH
Q 022453 21 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YA 99 (297)
Q Consensus 21 ~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~-~~ 99 (297)
.-.+.=..+|.+++.+++.+..+++-......+......-+.+|.+.| .-+.|+.-+ ..+++|||.+.- .+
T Consensus 63 ~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r----~~~~~~~Ta----~~gs~PGgas~m~~i 134 (352)
T COG3180 63 GQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR----FSILPGNTA----FLGSSPGGASAMVSI 134 (352)
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH----hcCCCcchh----hHhcCCchHHHHHHH
Confidence 344444578999999999999888888888888888888888999973 334554443 459999998874 68
Q ss_pred HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022453 100 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG 135 (297)
Q Consensus 100 t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~ 135 (297)
++-.|.|.. .-..++.+=-+.-..+.|+......+
T Consensus 135 A~d~gAd~~-~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 135 AQDYGADLR-LVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999 99999999999999999999999874
No 18
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.51 E-value=0.0014 Score=60.00 Aligned_cols=262 Identities=14% Similarity=0.174 Sum_probs=140.8
Q ss_pred ecCCccccc---hhh---hHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch
Q 022453 5 VFPPSFTWF---TAR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 78 (297)
Q Consensus 5 ~~P~~~~~~---~~~---~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~ 78 (297)
++|+.+..+ .+. -..+.+++.+|++|.+++.|+-.+.+||-..+ +..++++--++++.++ ++++.+.
T Consensus 28 f~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~~K~~i~~~~g~~~~----~~~g~~G 100 (314)
T TIGR00793 28 FAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VVTKIAVAWVVAAIAS----RIIPEDG 100 (314)
T ss_pred cCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---eeHHHHHHHHHHHHHH----HHcCcCC
Confidence 678775442 111 13568999999999999999998888875422 2356777777788887 7787654
Q ss_pred ---hHHHHH---HHHhccCchhhHH--HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccChHHHHHH
Q 022453 79 ---PIGAGI---MLVSCVSGAQLSN--YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSS 148 (297)
Q Consensus 79 ---~~~~gl---~l~~~~P~~~~s~--~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~--~~~i~~~~i~~~ 148 (297)
..-.|+ .+++++--.+-+- ..+...|-+.+--+. .+.++--=|+...+.+|. ..++|+..+
T Consensus 101 i~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~------~i~sl~~GPf~TMi~LG~sGlA~ip~~~l--- 171 (314)
T TIGR00793 101 VEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAF------VLMSLESGPLMTMVILGTAGIASFEPHVF--- 171 (314)
T ss_pred ccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhh------hhhhhccCcHHHHHHHhhccCCCCCHHHH---
Confidence 122222 2333333222221 123343333330222 233444456655555554 356777654
Q ss_pred HhHHHHHHHHHHHHHHHhcccchhhhccccchHHHHHHHHHH-HHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022453 149 ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCV-GAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV 227 (297)
Q Consensus 149 l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l 227 (297)
+-.++|+++|+.+-..-|++.|.+.|-.+.+ +-+.- ..-...|.+.+.+. |..-++..+..........|+.
T Consensus 172 --v~~ilPlliG~ilGNLD~~~r~fl~~~~~~l----IpFf~FaLGaginl~~i~~a-Gl~GIlLGl~v~~vtG~~~~~~ 244 (314)
T TIGR00793 172 --VGAVLPFLVGFALGNLDPELRDFFSKAVQTL----IPFFAFALGNTIDLGVIIQT-GLLGILLGVSVIILTGIPLILA 244 (314)
T ss_pred --HHHHHHHHHHHHHhcCCHHHHHHhccCCCee----eehhhhhhcCCCCHHHHHHh-CcchHHHHHHHHHHHhHHHHHH
Confidence 6788999999999988887777666644421 11110 11123455566553 3322222333344555566777
Q ss_pred HHhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCCc----c--hhh-HHHHHHHHHHHHHHHHHHHhhcc
Q 022453 228 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPL----V--SVP-PAISTVIMSLMGFFLVMLWAKKS 296 (297)
Q Consensus 228 ~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~----~--~lp-~~~~~~~q~i~~~~~a~~~~~~~ 296 (297)
-|..+ +++. ....+..+..-|. .+.+-+...- ||. + +.. ++-..++-.+...++..||.||.
T Consensus 245 dr~~~-g~~g----~aG~A~sstAGnA-vatPaavA~a-dPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr~ 313 (314)
T TIGR00793 245 DKFIG-GGDG----TAGIAASSSAGAA-VATPVLIAEM-VPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKKV 313 (314)
T ss_pred HHHhc-CCCC----chhhHHHHHHHHh-hhhHHHHHHh-ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77663 2222 2344444444454 2222222222 222 1 111 22244566777788888888875
No 19
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=97.43 E-value=0.0089 Score=55.89 Aligned_cols=209 Identities=17% Similarity=0.253 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch---hHHHHHHHHhc-----
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIMLVSC----- 89 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~---~~~~gl~l~~~----- 89 (297)
..+++++-+|++|.+++.++....+||-..+. ..++.+--++++... .+++.+. ....|...++.
T Consensus 49 ~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l~---~~k~~~~~~~~~~~~----~~~g~~~i~~gl~~G~s~la~~a~l~ 121 (326)
T PRK05274 49 AVPILAVFLFCMGASINLRATGTVLKKGGTLL---LTKFAVAALVGVIAG----KFIGEEGIRLGGFAGLSTLAIIAAMD 121 (326)
T ss_pred hHHHHHHHHHHcCCEEeccccchhhhhchhHH---HHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 35688999999999999999988887754332 235555556666666 5555422 22222222211
Q ss_pred -cCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccChHHHHHHHhHHHHHHHHHHHHHHHh
Q 022453 90 -VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRF 166 (297)
Q Consensus 90 -~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~--~~~i~~~~i~~~l~~~vllPl~lG~~lr~~ 166 (297)
+=++......+...+.... -+.....+ -.-|.....+.+. ..++|..++. -.++|+++|+.++.+
T Consensus 122 ~~N~~ly~~~~~~~g~~~d~-ga~i~lsl------~~Gp~~tM~lL~aagla~~p~~~li-----~allplliG~~lgnl 189 (326)
T PRK05274 122 NTNGGLYAALMGQYGTKEDA-GAFVLMSL------EDGPFMTMLALGAAGLASFPPPALV-----GAVLPLLVGFILGNL 189 (326)
T ss_pred CCCHHHHHHHHHHhCCCCCc-chHHHHHH------hhhHHHHHHHHHhhCcccCCCchhh-----HHHHHHHHHHHHHhH
Confidence 2223333334443332112 22222222 2234433333332 2345555543 223999999999998
Q ss_pred cccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheee
Q 022453 167 FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS 246 (297)
Q Consensus 167 ~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~ 246 (297)
.+++.+...+-...+ .-..+...-...|.+.+.+ .++.-.+.....+......+|+..|+++.+++ ....+
T Consensus 190 ~~~l~~~~~~Gi~~l---Lp~~~~~lG~~l~lq~i~~-~G~~GilL~~~~~~~t~~~~~~~~Rl~~~~~g-----~~g~a 260 (326)
T PRK05274 190 DPELRQFLGKAVPVL---IPFFAFALGNGIDLGTIIT-AGLSGILLGVAVVAVTGIPLYLADRLIGGGNG-----VAGAA 260 (326)
T ss_pred HHhhHHHhcCCcEEE---HHHHHHHHhcceeHhHHHh-cCCcchhhhhhHhhccchhhHhHhheeecCCC-----cchHH
Confidence 887777777665541 1111111223334455544 24444444555566677778999998853332 33455
Q ss_pred eeecccch
Q 022453 247 YETGMQSS 254 (297)
Q Consensus 247 ~~~g~rN~ 254 (297)
..++..|.
T Consensus 261 ~~ttaG~a 268 (326)
T PRK05274 261 AGSTAGNA 268 (326)
T ss_pred HHHHHHHH
Confidence 55566666
No 20
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.60 E-value=0.52 Score=42.63 Aligned_cols=146 Identities=17% Similarity=0.251 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHH--HHHHHhhhhhccCCc--hhHHHHHHHHhccC
Q 022453 16 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVSVFGLP--TPIGAGIMLVSCVS 91 (297)
Q Consensus 16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Pll--a~~l~~~~~~~~~l~--~~~~~gl~l~~~~P 91 (297)
......+.++||..|+++|.+++++..|+... .+.. . .+.|.. ++... ..++.+ .....|..+...+|
T Consensus 45 ~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~--~~~~-~-~~~~~~~~~~~~~----~~~~~~~~~~~~lg~~ls~Ts~ 116 (273)
T TIGR00932 45 HLAEFGVILLMFLIGLELDLERLWKLRKAAFG--VGVL-Q-VLVPGVLLGLLLG----HLLGLALGAAVVIGIILALSST 116 (273)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HHHH-H-HHHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHHhHH
Confidence 33456788999999999999999987664332 2222 2 223422 23233 445543 33334444443332
Q ss_pred chhhHHHHHHH--cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHHHHHhccc
Q 022453 92 GAQLSNYATFL--TDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 169 (297)
Q Consensus 92 ~~~~s~~~t~~--~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~ 169 (297)
+... .+...+ .+.+...+.+....++.+++.+..-+......+.+ .+..+...........-...+...|+..+.
T Consensus 117 ~v~~-~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T TIGR00932 117 AVVV-QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRP 193 (273)
T ss_pred HHHH-HHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 223322 23333325566677888888888777665543322 122222222223333444455555555444
Q ss_pred chh
Q 022453 170 ICN 172 (297)
Q Consensus 170 ~~~ 172 (297)
..+
T Consensus 194 ~~~ 196 (273)
T TIGR00932 194 VLR 196 (273)
T ss_pred HHH
Confidence 333
No 21
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.49 E-value=0.092 Score=43.80 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN 97 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~ 97 (297)
......++-...|++.+.+++++..|.....+...+......=..++.+. +..+.|..-+ +.+++|||...-
T Consensus 49 ~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~----~~~~~~~~ta----~La~~PGGl~~m 120 (156)
T TIGR03082 49 LALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLA----RLTGVDPLTA----FLATSPGGASEM 120 (156)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHH----HHHhCCchHHHH
Confidence 34566666778999999999999888777666555555555555666665 6677765444 579999998774
Q ss_pred -HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 022453 98 -YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 132 (297)
Q Consensus 98 -~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~l 132 (297)
..+...|.|.. .-.....+=.+.-.+..|+...+
T Consensus 121 ~~~A~~~gad~~-~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 121 AALAAELGADVA-FVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888899999 88888887777777888876653
No 22
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.40 E-value=0.094 Score=49.74 Aligned_cols=109 Identities=14% Similarity=0.245 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHhc--c-cchhhhccccchHHHHHHHHHHHHHhHhc--hHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022453 150 LQIVVVPIAAGLLLNRFF--P-RICNAIRPFLPPLSVLVTACCVGAPLAIN--IESVMSPFGLTILLLIITFHLSAFVAG 224 (297)
Q Consensus 150 ~~~vllPl~lG~~lr~~~--~-~~~~~~~~~~~~~s~~~llliv~~~~~~~--~~~i~~~~~~~~~~~~~~l~~~~~~~g 224 (297)
..-+++-+.+|.+++|+. + +..+.+.+.. -.+.+=..++..++.+ .+.+.+ .+.......+...+++.++
T Consensus 6 i~~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv---~~~~lP~liF~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 6 ILPIFLIILLGYLLGRFGILDPEASKGLSKLV---FNVFLPALIFSSIANTDTLEDLLS--LWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHHH
Confidence 355666778999998761 1 1222233322 2233333333334432 222222 2333444566677888899
Q ss_pred HHHHHhhccCcccccchhheeeeeecccch-HHHHHHHHHhCCC
Q 022453 225 YVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQD 267 (297)
Q Consensus 225 ~~l~~~~~l~~~~~~~~~~al~~~~g~rN~-~la~~la~~~f~~ 267 (297)
+...|.++.++++ +......++..|. .+++++....|++
T Consensus 81 ~~~~~~~~~~~~~----~~~~~~~~~~~N~~~lglpi~~~l~g~ 120 (385)
T PF03547_consen 81 FLLSRLFRLPKEW----RGVFVLAASFGNTGFLGLPILQALFGE 120 (385)
T ss_pred HHHHHhcCCCccc----ceEEEecccCCcchhhHHHHHHHHhcc
Confidence 9999988777776 7888888899999 4799999999975
No 23
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=96.27 E-value=0.069 Score=49.65 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHH-HHhc--c-cchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022453 150 LQIVVVPIAAGLLL-NRFF--P-RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGY 225 (297)
Q Consensus 150 ~~~vllPl~lG~~l-r~~~--~-~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~ 225 (297)
..-+++-+.+|.++ ||.. + +..+.+++..-.+..- ..++..+........+...+.............+.++|
T Consensus 10 ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP---~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (321)
T TIGR00946 10 VLPILVVILLGYILGKRFGILDEEHASGINRFVINFALP---LTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIW 86 (321)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999 7753 2 2233344433322222 22222333221110111112222233344456678888
Q ss_pred HHHH-hhccCcccccchhheeeeeecccchH-HHHHHHHHhCCCCc
Q 022453 226 VVTG-LAFAEAHDVKALQRTLSYETGMQSSL-LALALANRFFQDPL 269 (297)
Q Consensus 226 ~l~~-~~~l~~~~~~~~~~al~~~~g~rN~~-la~~la~~~f~~p~ 269 (297)
..+| .++.|+++ +.+..+.++..|++ ++++++...|++..
T Consensus 87 ~~~~~~~~~~~~~----~~~~~~~~~~~N~~~~GlPl~~~~~G~~~ 128 (321)
T TIGR00946 87 LITKPLFKADYGK----LSGFLLVSALPNTAFIGYPLLLSLFGEEG 128 (321)
T ss_pred HHHHHHHhcccch----hhHHHHHhhhccceeehHHHHHHHhcccc
Confidence 8888 66666666 78888888999975 79999999997443
No 24
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.24 E-value=1.2 Score=42.86 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH-HHhhhhh-ccCCc--hhHHHHHHHHhccCc
Q 022453 17 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI-FGTISVS-VFGLP--TPIGAGIMLVSCVSG 92 (297)
Q Consensus 17 ~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~-l~~~~~~-~~~l~--~~~~~gl~l~~~~P~ 92 (297)
.-...+.++||..|+..|.+++++..|+. ..+....-+..|..... .. . .++.+ +....|..+. ....
T Consensus 61 laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~----~~~~g~~~~~al~lg~~l~-~sS~ 132 (397)
T COG0475 61 LAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLL----LGILGLSLIAALFLGAALA-LSST 132 (397)
T ss_pred HHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHH----HHHhccChHHHHHHHHHHH-HHHH
Confidence 44567889999999999999999876653 22222223444533332 22 2 24444 3444444432 2233
Q ss_pred hhhHHHHHHHcC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccC-hHHHHHHHhHHHHHHHHHH
Q 022453 93 AQLSNYATFLTD--PPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD-VKGMVSSILQIVVVPIAAG 160 (297)
Q Consensus 93 ~~~s~~~t~~~~--Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~-~~~i~~~l~~~vllPl~lG 160 (297)
+..+.++.++-+ .+.............+.+.....+...+..+.+.+.+ ...+...+.....+=...|
T Consensus 133 ~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g 203 (397)
T COG0475 133 AIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG 203 (397)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555332 2222244555556666666666665554433333333 2344434334444334444
No 25
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.71 E-value=3.4 Score=43.67 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHhcC
Q 022453 16 RYYAPALGFLMFAVGVNSSEKDFIEAFKR 44 (297)
Q Consensus 16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~ 44 (297)
......+.+.||..|+.++.+++++..|+
T Consensus 106 ~la~lGlillmFliGLE~Dl~~lr~~~k~ 134 (832)
T PLN03159 106 TMANLGLLYFLFLVGVEMDISVIRRTGKK 134 (832)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHhcchH
Confidence 34456788899999999999999876544
No 26
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.46 E-value=3.3 Score=41.70 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHhcCh
Q 022453 16 RYYAPALGFLMFAVGVNSSEKDFIEAFKRP 45 (297)
Q Consensus 16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p 45 (297)
......+.+++|..|++++.+++++..+..
T Consensus 61 ~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~ 90 (562)
T PRK05326 61 LVGNLALAVILFDGGLRTRWSSFRPALGPA 90 (562)
T ss_pred HHHHHHHHHHHHcCccCCCHHHHHHHHHHH
Confidence 345678999999999999999999876543
No 27
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.29 E-value=0.2 Score=46.46 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhccccchHHHHHH-HHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 022453 151 QIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT- 228 (297)
Q Consensus 151 ~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~l-lliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~- 228 (297)
-...+.+++|+.++.+..+..++.++-.+..++..+ .-++..-+..+.+++.+ .|+...+...+.....+..+|+++
T Consensus 27 ~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~lg~ 105 (305)
T PF03601_consen 27 GALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWLGR 105 (305)
T ss_pred cHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999997444444455544433332111 22222333445566666 466555666677778889999999
Q ss_pred HhhccCcccccchhheeeeeecccchHHHHHHHHH
Q 022453 229 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANR 263 (297)
Q Consensus 229 ~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~ 263 (297)
|.+|+|++. ..-++-.++..-.+-..+++..
T Consensus 106 r~~~l~~~~----~~Lia~GtsICG~SAi~A~a~~ 136 (305)
T PF03601_consen 106 RLFGLDRKL----AILIAAGTSICGASAIAATAPV 136 (305)
T ss_pred HHhCCCHHH----HHHHHhhcccchHHHHHHHccc
Confidence 999888765 5555555555555544455443
No 28
>PRK09903 putative transporter YfdV; Provisional
Probab=95.29 E-value=0.55 Score=43.53 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=59.9
Q ss_pred HHhHHHHHHHHHHHHHHHhc--c-cchhhhccccchHHHHHHHHHHHHHhHh-chHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022453 148 SILQIVVVPIAAGLLLNRFF--P-RICNAIRPFLPPLSVLVTACCVGAPLAI-NIESVMSPFGLTILLLIITFHLSAFVA 223 (297)
Q Consensus 148 ~l~~~vllPl~lG~~lr~~~--~-~~~~~~~~~~~~~s~~~llliv~~~~~~-~~~~i~~~~~~~~~~~~~~l~~~~~~~ 223 (297)
+...-+.+=+.+|.++||.. + +..+.+++..-.+..-++ +...+.. +.+...+ .+.......+.....+..
T Consensus 7 ~~ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPal---if~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 81 (314)
T PRK09903 7 GDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAA---LFVSITRANREMIFA--DTRLTLVSLVVIVGCFFF 81 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HHHHHHhCCHHHHHh--hhhHHHHHHHHHHHHHHH
Confidence 33455666677888888753 2 223334443332222222 2222222 2222222 122333444445566667
Q ss_pred HHHHHHh-hccCcccccchhheeeeeecccch-HHHHHHHHHhCCCC
Q 022453 224 GYVVTGL-AFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQDP 268 (297)
Q Consensus 224 g~~l~~~-~~l~~~~~~~~~~al~~~~g~rN~-~la~~la~~~f~~p 268 (297)
+|..+|. .+.+++| +....+.++..|+ -++.++....|++.
T Consensus 82 ~~~~~~~~~~~~~~~----~~~~~~~~~~~N~gf~G~Pl~~~~~G~~ 124 (314)
T PRK09903 82 SWFGCYKFFKRTHAE----AAVCALIAGSPTIGFLGFAVLDPIYGDS 124 (314)
T ss_pred HHHHHHHHhcCCcch----hhHhhhhhcCCCcccccHHHHHHHcCch
Confidence 7777753 3444444 5566777777887 58999999999754
No 29
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.17 E-value=0.39 Score=40.69 Aligned_cols=104 Identities=22% Similarity=0.193 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhccc----chhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 022453 155 VPIAAGLLLNRFFPR----ICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTG- 229 (297)
Q Consensus 155 lPl~lG~~lr~~~~~----~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~- 229 (297)
-|+..|+.+-++.++ ........++.+....++..+....+++.-+-.++.+++.....++.+..+..+++..+|
T Consensus 28 G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~ 107 (169)
T PF06826_consen 28 GVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRY 107 (169)
T ss_pred HHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555332 222233333344444444444444444432222334777778888899999999999998
Q ss_pred hhccCcccccchhheeeeeecccchHHHHHHHHHh
Q 022453 230 LAFAEAHDVKALQRTLSYETGMQSSLLALALANRF 264 (297)
Q Consensus 230 ~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~ 264 (297)
.+|+|..+ +...-+|.++.+-++.-|...
T Consensus 108 ~~~l~~~~------~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 108 LFKLNPGI------AAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HcCCCHHH------HHHHHHccccCcHHHHHHHHh
Confidence 78766644 667777888887777777666
No 30
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.82 E-value=0.72 Score=43.08 Aligned_cols=107 Identities=8% Similarity=0.136 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH-
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN- 97 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~- 97 (297)
...-.++=...|++.+.+++++..|.-..............=..++.+. ++.+.|.. -.+++++|||...-
T Consensus 207 ~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~----~~~~~~~~----t~~La~aPGGl~eM~ 278 (318)
T PF05145_consen 207 NAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLS----RLTGIDFL----TALLATAPGGLAEMA 278 (318)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHH----HHHHHhCCccHHHHH
Confidence 3344455568899999999998776655555555555555666677776 66676643 34679999998874
Q ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHc
Q 022453 98 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 134 (297)
Q Consensus 98 ~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~ 134 (297)
..+.-.|.|.+ .-.....+=.+.-.++.|++..++.
T Consensus 279 l~A~~l~~d~~-~V~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 279 LIALALGADVA-FVAAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HHHHHcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999 8888888888888888888877764
No 31
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.69 E-value=5.8 Score=40.52 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc--hhHHHHHHHHhccCchhh
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQL 95 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~--~~~~~gl~l~~~~P~~~~ 95 (297)
....+.++||..|+.++++++++..|+ ....+. .|.++.-.+.++++ ..++.+ ....+|..+..+++ +..
T Consensus 60 aelGvv~LlF~iGLEl~~~~l~~~~~~--~~~~g~-~qv~~~~~~~~~~~----~~~g~~~~~al~ig~~la~SSt-aiv 131 (621)
T PRK03562 60 AEFGVVLMLFVIGLELDPQRLWKLRRS--IFGGGA-LQMVACGGLLGLFC----MLLGLRWQVALLIGLGLALSST-AIA 131 (621)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHHH-HHH
Confidence 346788999999999999999876443 222222 34444333444444 555554 34445555444433 333
Q ss_pred HHHHHHHc
Q 022453 96 SNYATFLT 103 (297)
Q Consensus 96 s~~~t~~~ 103 (297)
..++...-
T Consensus 132 ~~~L~e~~ 139 (621)
T PRK03562 132 MQAMNERN 139 (621)
T ss_pred HHHHHHhc
Confidence 44555443
No 32
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=93.91 E-value=0.64 Score=40.96 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=64.4
Q ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHH
Q 022453 37 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTS 116 (297)
Q Consensus 37 ~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~ 116 (297)
+.++..||.+.+..+..+.-++--...+.++ +.+++|++....+. .=+=+++.+.-.++..|||.+ ++...+.
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~----~~lgl~~~~~~Sl~--pkSVTtpiAi~is~~iGG~~s-Lta~~Vv 141 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLA----RLLGLSPEIILSLA--PKSVTTPIAIEISEQIGGIPS-LTAVFVV 141 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHH--HHHhhHHHHHHHHHHhCChHH-HHHHHHH
Confidence 4445556666777777776666666677777 78888888776554 111133333457889999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022453 117 LSTATAVFVTPLLSLLL 133 (297)
Q Consensus 117 ~st~l~~~~~Pl~~~ll 133 (297)
++-+++...-|.++.++
T Consensus 142 itGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 142 ITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHhhHHHHhHHHHHhHc
Confidence 99999999988888775
No 33
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.75 E-value=8.9 Score=39.01 Aligned_cols=82 Identities=15% Similarity=0.063 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch--hHHHHHHHHhccCchhh
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT--PIGAGIMLVSCVSGAQL 95 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~--~~~~gl~l~~~~P~~~~ 95 (297)
....+.++||..|+.++++++++..|+ ....+. .|.++.-.+..+.. ..++.+. ...+|..+ +.++++..
T Consensus 60 aelGvv~LLF~iGLel~~~~l~~~~~~--~~~~g~-~~v~~t~~~~~~~~----~~~g~~~~~a~~~g~~l-a~SSTaiv 131 (601)
T PRK03659 60 SELGVVFLMFIIGLELNPSKLWQLRRS--IFGVGA-AQVLLSAAVLAGLL----MLTDFSWQAAVVGGIGL-AMSSTAMA 131 (601)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHH----HHHccCHHHHHHHHHHH-HHHHHHHH
Confidence 346788999999999999999876442 222222 33333222333333 3445443 34444332 22333444
Q ss_pred HHHHHHHcCCCC
Q 022453 96 SNYATFLTDPPL 107 (297)
Q Consensus 96 s~~~t~~~~Gd~ 107 (297)
..+....-.-|.
T Consensus 132 ~~iL~e~~~~~t 143 (601)
T PRK03659 132 LQLMREKGMNRS 143 (601)
T ss_pred HHHHHHcccccC
Confidence 455555543334
No 34
>PRK10711 hypothetical protein; Provisional
Probab=93.10 E-value=1.1 Score=39.86 Aligned_cols=86 Identities=15% Similarity=0.000 Sum_probs=64.7
Q ss_pred HHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH---HHHHHcCCCCcchHHHH
Q 022453 38 FIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLSIVM 114 (297)
Q Consensus 38 ~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~---~~t~~~~Gd~~~ls~~l 114 (297)
.+...||++.+..+...--++--..++.++ +.++.|++....+ .|=.++.+ -.++..||+.+ ++...
T Consensus 81 ~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~----~~lg~~~~~~~Sl-----~pkSVTtPIAm~is~~iGG~~s-Lta~~ 150 (231)
T PRK10711 81 LHQIRARWKSIISICFIGSVVAMVTGTAVA----LWMGATPEIAASI-----LPKSVTTPIAMAVGGSIGGIPA-ISAVC 150 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHH-----hhhhhhHHHHHHHHHHhCCcHH-HHHHH
Confidence 344445566677777766666667777887 8889988877654 46554443 47899999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022453 115 TSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 115 t~~st~l~~~~~Pl~~~ll 133 (297)
+.++-+++.+.-|.++.++
T Consensus 151 ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 151 VIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988875
No 35
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=93.03 E-value=1.1 Score=39.77 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=61.8
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhH---HHHHHHcCCCCcchHH
Q 022453 36 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS---NYATFLTDPPLAPLSI 112 (297)
Q Consensus 36 ~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s---~~~t~~~~Gd~~~ls~ 112 (297)
++.+...||.+.+..+...--+.--..++.++ +.++.|++....+ .|=..+. --.++..|||.+ ++.
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la----~~lg~~~~i~~Sl-----~pkSvTtpiAm~vs~~iGG~~s-Lta 147 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLA----LLLGLGPEIIASL-----LPKSVTTPIAMHVSEMIGGIPA-VTA 147 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHh-----hhHHhhHHHHHHHHHHhCChHH-HHH
Confidence 34444445555666666655555556667776 7888888776543 4544444 347888899999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022453 113 VMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 113 ~lt~~st~l~~~~~Pl~~~ll 133 (297)
..+.++-+++...-|.++.++
T Consensus 148 ~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 148 VFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999999999988888887765
No 36
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=92.92 E-value=8.7 Score=36.48 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=65.4
Q ss_pred HHHHHhcCCCCHHHHHHHhcChhHHHH-HHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHHHH
Q 022453 24 FLMFAVGVNSSEKDFIEAFKRPAAIFA-GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL 102 (297)
Q Consensus 24 ~~mf~~gl~l~~~~~~~~~~~p~~~~~-~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~~ 102 (297)
+++++.|.-.| +...+.|||..+. +...|+.+.- ++..+ ..++.++..+..+-+.+.+=|.++-.+-+++
T Consensus 110 LIFlGIGAMtD---FgpllanP~~~ll~gaaAQ~GiF~--t~~~A----~~lGF~~~eAAsIgIIGgADGPTaIf~s~kL 180 (399)
T TIGR03136 110 ILFFGIGAMSD---ISFILARPWASITVALFAEMGTFA--TLVIG----YYCGLTPGEAAAVGTIGGADGPMVLFASLIL 180 (399)
T ss_pred HHHHhccHHhc---chHHHhChHHHHHHHHHHHhhHHH--HHHHH----HHcCCCHHHhhHHhhcccCCccHHHHHHHhh
Confidence 34467777555 4556789999988 8999998753 33444 4567888888888888887766555555555
Q ss_pred cCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453 103 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 135 (297)
Q Consensus 103 ~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~ 135 (297)
+.. .- -+++..+-| .-+.++.-|-.+.++..
T Consensus 181 Ap~-Ll-g~IaVAAYsYMaLVPiiqPpimklLtt 212 (399)
T TIGR03136 181 AKD-LF-VPISIIAYLYLSLTYAGYPYLIKLLVP 212 (399)
T ss_pred hhH-hH-HHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 532 22 233333333 34567777888888764
No 37
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=92.89 E-value=1.2 Score=39.72 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=62.1
Q ss_pred HHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH---HHHHHcCCCCcchHHHH
Q 022453 38 FIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLSIVM 114 (297)
Q Consensus 38 ~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~---~~t~~~~Gd~~~ls~~l 114 (297)
.+...|+++.+..+..+--.+--..++.++ +.+++|++....+ .|=.++.+ -.++..||+.+ ++...
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la----~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~ps-LtA~~ 155 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVA----KLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKE-ITSFA 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHH-HHHHH
Confidence 334445566677777666666666677777 7888888766544 46544443 47888899999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022453 115 TSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 115 t~~st~l~~~~~Pl~~~ll 133 (297)
+.++-+++.+.-|.++.++
T Consensus 156 ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 156 VIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999888888887765
No 38
>COG0679 Predicted permeases [General function prediction only]
Probab=92.30 E-value=3 Score=38.72 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHhcccchh---hhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022453 150 LQIVVVPIAAGLLLNRFFPRICN---AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYV 226 (297)
Q Consensus 150 ~~~vllPl~lG~~lr~~~~~~~~---~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~ 226 (297)
..-+.+=+.+|.+++|+..-..| .+.+..-.+..- ..++..+..+...-.++ +......+......+..+++
T Consensus 9 vlpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP---~LlF~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 83 (311)
T COG0679 9 VLPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALP---ALLFNSIATADLSGLAD--LGLIVASLVATLLAFFLLAL 83 (311)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhH---HHHHHHHHhCCcchhhh--HHHHHHHHHHHHHHHHHHHH
Confidence 34555556788888877432222 233322222221 22223333333221121 23334444445555666666
Q ss_pred HHHhhc-cCcccccchhheeeeeecccchH-HHHHHHHHhCCCCcchhhHHH
Q 022453 227 VTGLAF-AEAHDVKALQRTLSYETGMQSSL-LALALANRFFQDPLVSVPPAI 276 (297)
Q Consensus 227 l~~~~~-l~~~~~~~~~~al~~~~g~rN~~-la~~la~~~f~~p~~~lp~~~ 276 (297)
.+|..+ .++++ +.......+..|++ ++.+++...|++...+....+
T Consensus 84 ~~~~~~~~~~~~----~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~ 131 (311)
T COG0679 84 IGRFLFKLDKRE----TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIF 131 (311)
T ss_pred HHHHHhccchhh----HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHH
Confidence 666543 33333 55677778888885 679999999986665554433
No 39
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=91.96 E-value=2.2 Score=40.15 Aligned_cols=105 Identities=8% Similarity=0.002 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhc-ccchhhhccccchHHHHHH-HHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 022453 154 VVPIAAGLLLNRFF-PRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT-GL 230 (297)
Q Consensus 154 llPl~lG~~lr~~~-~~~~~~~~~~~~~~s~~~l-lliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~-~~ 230 (297)
++-+++|+.++... ++..++.++-.+..++..+ .-++..-+..+.+++.+ .|+..+..........+..+++++ |+
T Consensus 35 ~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~-~G~~~l~~~~~~v~~~~~~~~~~g~k~ 113 (335)
T TIGR00698 35 FLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIAD-VGPNEIVADTLILTSTFFLTVFLGSSR 113 (335)
T ss_pred HHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899998743 3444444443332222221 12222233445566655 466665555666677888889998 78
Q ss_pred hccCcccccchhheeeeeecccchHHHHHHHHH
Q 022453 231 AFAEAHDVKALQRTLSYETGMQSSLLALALANR 263 (297)
Q Consensus 231 ~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~ 263 (297)
+|+|++. +.-++-.++..=.+-..+.+..
T Consensus 114 l~l~~~~----~~Lia~GtsICGaSAi~A~a~~ 142 (335)
T TIGR00698 114 LKLDKQM----SILLGAGSSICGAAAVAAIEPV 142 (335)
T ss_pred hCCChhH----HHHHHcchhHHHHHHHHHhccc
Confidence 9888766 5555555555554444444433
No 40
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=91.57 E-value=2.3 Score=36.79 Aligned_cols=133 Identities=19% Similarity=0.313 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022453 154 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMS--PFGLTILLLIITFHLSAFVAGYVVTGLA 231 (297)
Q Consensus 154 llPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~--~~~~~~~~~~~~l~~~~~~~g~~l~~~~ 231 (297)
+..+.+|+.+.++.+...+...+ ........+++.+..-++.|.+.+.+ ..+++.+...+.-...+...|+..++.+
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~-~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDK-ISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred eeeHHHHHHHHHHhccccccccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888775543222222 22233344444455556666543322 1356666655555667778888888888
Q ss_pred ccCcccccchhheeeeeecccchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022453 232 FAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAK 294 (297)
Q Consensus 232 ~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~~~lp~~~~~~~q~i~~~~~a~~~~~ 294 (297)
+.+.+| +++...|.-=-++.-.+.+... +|+...-+.+..++-=+.+.+......|
T Consensus 81 ~~~~~~------~lav~sG~GwYSlsg~~i~~~~-~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 81 GLSLKE------SLAVASGFGWYSLSGVLITQLY-GPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred cCCHHH------HHHHHccCcHHHhHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655 6666677766677777666655 4776554555555544455555555544
No 41
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=91.56 E-value=12 Score=35.10 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=66.6
Q ss_pred HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHHHHcC
Q 022453 25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTD 104 (297)
Q Consensus 25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~ 104 (297)
++++.|.-. |+...+.|||..+.+...|+.+.- ++..+ ..++.++..+..+-+.+.+=|.++-.+-++++
T Consensus 75 IF~GIGAmt---DFgpllanP~~~llGaaAQ~Gif~--t~~~A----~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA- 144 (360)
T PF03977_consen 75 IFMGIGAMT---DFGPLLANPKTLLLGAAAQFGIFA--TFLGA----ILLGFTPKEAASIGIIGGADGPTSIFVSSKLA- 144 (360)
T ss_pred HHHHHhHHH---hhHHHHhCHHHHHHHHHHHHhHHH--HHHHH----HHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-
Confidence 345777655 555667899999999999998764 44444 55688888888888888877665555545554
Q ss_pred CCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453 105 PPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 135 (297)
Q Consensus 105 Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~ 135 (297)
-|.- -.++..+-| .-+.++.-|-.+.++..
T Consensus 145 p~Ll-gpIaVaAYsYMaLvPiiqPpimklLtt 175 (360)
T PF03977_consen 145 PHLL-GPIAVAAYSYMALVPIIQPPIMKLLTT 175 (360)
T ss_pred HHHH-HHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence 2333 333333333 34667788888888864
No 42
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.16 E-value=18 Score=36.32 Aligned_cols=53 Identities=28% Similarity=0.461 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP 77 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~ 77 (297)
-...+.++||..|+.++.+++++.. +....+...+.+..-++++++. ..++.+
T Consensus 61 a~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 113 (558)
T PRK10669 61 AELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALS----AVLGWS 113 (558)
T ss_pred HHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH----HHhCCC
Confidence 4567889999999999999997652 2333344445555445555554 555544
No 43
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.07 E-value=2.4 Score=39.66 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcccchhhhccccchHHHHHH-HHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022453 154 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAF 232 (297)
Q Consensus 154 llPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~l-lliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~ 232 (297)
.+-+++|+.++ .+++..++.++-...-++..+ .-++..-+..|.+++.+ .|...+..........+..+|+++|.+|
T Consensus 41 ~lAIllGi~l~-~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~-~G~~~v~~~~~~l~~t~~~~~~lg~~lg 118 (334)
T COG2855 41 TLAILLGILLG-ILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIAD-VGGSGVLIIAITLSSTFLFAYFLGKLLG 118 (334)
T ss_pred HHHHHHHHHHh-ccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHH-cCccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455788887 333333333333222222222 22223345567777766 4666666666677789999999999998
Q ss_pred cCccc
Q 022453 233 AEAHD 237 (297)
Q Consensus 233 l~~~~ 237 (297)
+|++.
T Consensus 119 ld~~~ 123 (334)
T COG2855 119 LDKKL 123 (334)
T ss_pred CCHHH
Confidence 88865
No 44
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=89.08 E-value=13 Score=35.25 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH-
Q 022453 20 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY- 98 (297)
Q Consensus 20 ~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~- 98 (297)
..-.++.-..|++.+...+++..|--.......+..+...-..++.+. +..+.|... ..++.+|||...-.
T Consensus 241 va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~----~~~~i~~~t----a~La~sPGGl~~ma~ 312 (352)
T COG3180 241 VAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLS----WLTGIDLNT----AYLATSPGGLDTMAA 312 (352)
T ss_pred HHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHH----HhcCCCHHH----HHHHcCCCcHHHHHH
Confidence 445556668899999999988776655666666666677777778886 777776544 36799999988864
Q ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 99 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 99 ~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll 133 (297)
.+...+-|.+ +-.+++.+=-+.-....|....++
T Consensus 313 ~A~~l~ad~a-~V~a~q~lRll~il~i~p~l~r~l 346 (352)
T COG3180 313 IAAALGADPA-FVMALQVLRLLFILLLGPALARFL 346 (352)
T ss_pred HHHHcCCChH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666999 888888887777777777766654
No 45
>PRK04972 putative transporter; Provisional
Probab=88.49 E-value=4.1 Score=41.08 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCC
Q 022453 205 FGLTILLLIITFHLSAFVAGYVVT-GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDP 268 (297)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~l~-~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p 268 (297)
.++.+.+..++.......++++++ +.+|++.. +.+..-+|.+...-++.-+...-+++
T Consensus 471 ~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~------~~~G~~aG~~t~~~~l~~~~~~~~~~ 529 (558)
T PRK04972 471 VGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA------LLFGAIMGARTCAPAMEIISDTARSN 529 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------HHHHHHhCCCCCcHHHHHHHhhcCCC
Confidence 367776677777777778888888 46666654 46666778887776666666555543
No 46
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=87.28 E-value=6.2 Score=39.85 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccC
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKR-PAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVS 91 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~-p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P 91 (297)
...+.+-+|+.|++.-++=++...|+ .+..+.+++. .+..=+.++++. +++++|+..+.|++-=+..-
T Consensus 61 ~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~-~~~~~~~~~~~~----~~~g~~~~~~~Gl~aGalT~ 129 (562)
T TIGR03802 61 AVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF-AVSGLITVYALA----KIFGLDKGTAAGLAAGGLTQ 129 (562)
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHH----HHhCCCHHHHHHHHhchhhc
Confidence 45667777899999999888766554 3444444433 233335566666 88999999999988554443
No 47
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.25 E-value=21 Score=31.72 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=62.5
Q ss_pred HhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCCcc-h
Q 022453 193 PLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLV-S 271 (297)
Q Consensus 193 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~~-~ 271 (297)
-+++|.+.+.++ ++.+.....+=...++..+++++|+++++++- .+++.=- .-.+++|+-++...-+.|+. +
T Consensus 78 PLYkq~~~ik~~-w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~----~~Sl~Pk--SvTTpiAm~vs~~iGGip~lta 150 (230)
T COG1346 78 PLYKQRHLIKRH-WKPILAGVLVGSVVAIISGVLLAKLFGLSPEL----ILSLLPK--SVTTPIAMEVSESIGGIPALTA 150 (230)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----HHHhccc--ccccHHHHHHHHhcCCchHHHH
Confidence 457788877765 33455555556678889999999999887754 3443321 22345677777776666664 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q 022453 272 VPPAISTVIMSLMGFFLVMLWAKK 295 (297)
Q Consensus 272 lp~~~~~~~q~i~~~~~a~~~~~~ 295 (297)
+-+++-++.-.++|..+-...|-|
T Consensus 151 v~Vi~tGi~Gavlg~~llk~~~i~ 174 (230)
T COG1346 151 VFVILTGILGAVLGPLLLKLLRIR 174 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 455566777788887776666533
No 48
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.19 E-value=9.8 Score=33.74 Aligned_cols=88 Identities=24% Similarity=0.198 Sum_probs=67.0
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH---HHHHHcCCCCcchHH
Q 022453 36 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLSI 112 (297)
Q Consensus 36 ~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~---~~t~~~~Gd~~~ls~ 112 (297)
|+.+...||++.+..+.+.--++-=..++.++ +.++.+++... +..|=..+++ -.++..||-.+ ++.
T Consensus 81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~lla----k~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~-lta 150 (230)
T COG1346 81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLA----KLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPA-LTA 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchH-HHH
Confidence 44555566677777777766555556677777 88999988654 5567666554 37899999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022453 113 VMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 113 ~lt~~st~l~~~~~Pl~~~ll 133 (297)
..+.++-++.-+.-|..+..+
T Consensus 151 v~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 151 VFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888876
No 49
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=85.43 E-value=32 Score=32.28 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=58.6
Q ss_pred HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC------chhHHHHHHHHhccCchhhHHH
Q 022453 25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL------PTPIGAGIMLVSCVSGAQLSNY 98 (297)
Q Consensus 25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l------~~~~~~gl~l~~~~P~~~~s~~ 98 (297)
++++.|.-. |+...+.|||..+.+...|+.+.--+..+ ..++. +...+..+-+.+.+=|.++-.+
T Consensus 69 IFlGIGAmt---DFgpllanP~~~llGaaAQ~GiF~t~~~A------~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~ 139 (354)
T TIGR01109 69 IFMGIGALT---DFGPLLANPRTLLLGAAAQFGIFATVFGA------LTLNFFGIISFSLPQAAAIGIIGGADGPTAIYL 139 (354)
T ss_pred HHHhccHHh---hhHHHHhChHHHHHHHHHHhhHHHHHHHH------HHhCCCcccccChhhceeeeeeccCCCchhhhh
Confidence 345777655 45566789999999999999876433333 33444 4566666666676655544444
Q ss_pred HHHHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453 99 ATFLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 135 (297)
Q Consensus 99 ~t~~~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~ 135 (297)
-++++. |.- -+++..+-| .-+.++.-|-.+.++..
T Consensus 140 s~~lap-~Ll-g~IaVAAYsYMaLvPiiqPpimklLtt 175 (354)
T TIGR01109 140 SGKLAP-ELL-AAIAVAAYSYMALVPIIQPPIMKALTS 175 (354)
T ss_pred Hhhhhh-HHH-HHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 444432 222 233333322 34556677777777754
No 50
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=84.51 E-value=38 Score=32.22 Aligned_cols=129 Identities=16% Similarity=0.257 Sum_probs=72.8
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhh---hhhccCCchhHHHHHHHHhccCchhhHHHHHH-----------
Q 022453 36 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI---SVSVFGLPTPIGAGIMLVSCVSGAQLSNYATF----------- 101 (297)
Q Consensus 36 ~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~---~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~----------- 101 (297)
+++.|.++.=..+..+...-..+.|.++..+... -+..++.||....+.++-.=+=|-..+.-++.
T Consensus 33 ~~FeeGi~aMG~lalsm~GI~~laP~ls~~l~~ii~Pi~~~lgaDpsmfa~siLA~DMGGY~LA~~la~~~~~~~fsG~i 112 (372)
T PRK15086 33 EQFEEGIMAMGPLALAMVGIMALAPVLAHVLGPVIIPIYEALGADPSMFATTLLAVDMGGYQLAKELAGDPEAWLFSGLI 112 (372)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHhcCcCHHHHHHHhcChhhHHHHHHH
Confidence 3455555554556777777777888888776521 01335678888777665443433333322221
Q ss_pred -------------------HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHH
Q 022453 102 -------------------LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLL 162 (297)
Q Consensus 102 -------------------~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~ 162 (297)
+-+-|.+ --....+..++++|.-+.. .|--..+|+..++.++.-.+++-.+++..
T Consensus 113 lgsmlG~TIvFtIPVaLgii~k~D~~-----yla~Gil~GiitIPiG~~v-ggl~~g~~~~~il~NL~Piii~~illa~G 186 (372)
T PRK15086 113 LGSMMGATIVFTIPVALGIIEKEDRK-----YLALGVLAGIITIPIGCLI-GGLVAGFDFALILRNLIPVIIFAILLALG 186 (372)
T ss_pred HHHhccceEEeeHHhhHhhcchhhHH-----HHHHHHHHHhHhhcHHHHH-HHHHHhCCHHHHHHHHhHHHHHHHHHHHH
Confidence 1122222 1122334445555554321 12224688888899999999999999888
Q ss_pred HHHhcccc
Q 022453 163 LNRFFPRI 170 (297)
Q Consensus 163 lr~~~~~~ 170 (297)
++++..+.
T Consensus 187 L~~~p~~m 194 (372)
T PRK15086 187 LKFIPEKM 194 (372)
T ss_pred HHHHHHHH
Confidence 88665433
No 51
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=84.38 E-value=39 Score=32.28 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=61.3
Q ss_pred HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh-c---cCCchhHHHHHHHHhccCchhhHHHHH
Q 022453 25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS-V---FGLPTPIGAGIMLVSCVSGAQLSNYAT 100 (297)
Q Consensus 25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~-~---~~l~~~~~~gl~l~~~~P~~~~s~~~t 100 (297)
++++.|.-. |+...+.|||.++.|...|+.+.--...+.. . . .+.+...+..+-+.+.+=|.++-.+-+
T Consensus 140 IF~GIGAMt---DFgpLlanP~~~llGaAAQ~GIF~t~~~A~~----l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15475 140 IFMGVGAMT---DFGPLLANPRTLLLGAAAQFGIFATVLGALT----LNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred HHHhccHHh---cchHHhhCHHHHHHHHHHHhhHHHHHHHHHH----HhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 345777655 4556678999999999999987644433332 1 1 256666666666667776655444444
Q ss_pred HHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453 101 FLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 135 (297)
Q Consensus 101 ~~~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~ 135 (297)
+++. |.- -+++..+-| .-+.++.-|-.+.++..
T Consensus 213 kLAP-~Ll-g~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15475 213 KLAP-ELL-GAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred hhhh-HhH-HHHHHHHHHHHHHHhcccchHHHhccC
Confidence 4443 332 333333333 34566777888887753
No 52
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=84.36 E-value=39 Score=32.28 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=61.1
Q ss_pred HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh-c---cCCchhHHHHHHHHhccCchhhHHHHH
Q 022453 25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS-V---FGLPTPIGAGIMLVSCVSGAQLSNYAT 100 (297)
Q Consensus 25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~-~---~~l~~~~~~gl~l~~~~P~~~~s~~~t 100 (297)
++++.|.-. |+...+.|||.++.|...|+.+.--...+.. . . .+.+...+..+-+.+.+=|.++-.+-+
T Consensus 140 IF~GIGAMt---DFgpLlanP~~~llGaAAQ~GIF~t~~~A~~----l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15477 140 IFMGVGAMT---DFGPLLANPRTLLLGAAAQFGIFATVLGALT----LNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred HHHhccHHh---cchHHhhCHHHHHHHHHHHhhHHHHHHHHHH----HhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 345777655 4556678999999999999987644433332 1 1 256666666666667776655444444
Q ss_pred HHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453 101 FLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 135 (297)
Q Consensus 101 ~~~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~ 135 (297)
+++. |.- -+++..+-| .-+-++.-|-.+.++..
T Consensus 213 kLAP-~Ll-g~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15477 213 KLAP-ELL-GAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred hhhh-HhH-HHHHHHHHHHHHHHhcccchHHHhccC
Confidence 4442 332 333333333 34566777888887753
No 53
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=84.32 E-value=39 Score=32.27 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=61.1
Q ss_pred HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh-c---cCCchhHHHHHHHHhccCchhhHHHHH
Q 022453 25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS-V---FGLPTPIGAGIMLVSCVSGAQLSNYAT 100 (297)
Q Consensus 25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~-~---~~l~~~~~~gl~l~~~~P~~~~s~~~t 100 (297)
++++.|.-. |+...+.|||.++.|...|+.+.--...+.. . . .+.+...+..+-+.+.+=|.++-.+-+
T Consensus 140 IF~GIGAMt---DFgpLlanP~~~llGaAAQ~GIF~t~~~A~~----l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15476 140 IFMGVGAMT---DFGPLLANPRTLLLGAAAQFGIFATVLGALT----LNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred HHHhccHHh---cchHHhhCHHHHHHHHHHHhhHHHHHHHHHH----HhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 345777655 4556678999999999999987644433332 1 1 256666666666667776655444444
Q ss_pred HHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453 101 FLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 135 (297)
Q Consensus 101 ~~~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~ 135 (297)
+++. |.- -+++..+-| .-+-++.-|-.+.++..
T Consensus 213 kLAP-~Ll-g~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15476 213 KLAP-ELL-GAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred hhhh-HhH-HHHHHHHHHHHHHHhcccchHHHhccC
Confidence 4442 332 333333333 34566777888887753
No 54
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=84.03 E-value=0.059 Score=50.98 Aligned_cols=141 Identities=19% Similarity=0.309 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHH--HHHHHhhhhh---cc--CCchhHHHHHHHH
Q 022453 15 ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVS---VF--GLPTPIGAGIMLV 87 (297)
Q Consensus 15 ~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Pll--a~~l~~~~~~---~~--~l~~~~~~gl~l~ 87 (297)
+......+.++||..|+++|.+++++..|+.-.. +.. -...|.. ++... . .. +.......|..+.
T Consensus 49 ~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~--~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~al~l~~~~~ 120 (380)
T PF00999_consen 49 ELLAEIGLAFLLFEAGLELDIKELRRNWRRALAL--GLV--GFLLPFILVGFLLS----FFLFILGLSWAEALLLGAILS 120 (380)
T ss_dssp -SSHHHHS--SSHHHHTTGGGG---------------------------------------------------TTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccc--ccc--eeeehhhHHHHHHH----HhhccchhhhHHHhhhHHhhh
Confidence 3556788999999999999999999887764322 221 1222332 22322 1 12 3344555555555
Q ss_pred hccCchhhHHH-HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHHHH
Q 022453 88 SCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLN 164 (297)
Q Consensus 88 ~~~P~~~~s~~-~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr 164 (297)
.+.|+...... =.+..++|........+.++...+.+...+..... +++...+...........+..=...|...+
T Consensus 121 ~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (380)
T PF00999_consen 121 ATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQLLLSFLWIILIGIVIGLLFG 197 (380)
T ss_dssp T--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--------------------------------------
T ss_pred cccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccchhcchhhhhhhheeeecccc
Confidence 55555544433 22333444442445666777888888777766665 333444444433333333333333344333
No 55
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=83.33 E-value=39 Score=31.41 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHH
Q 022453 20 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA 99 (297)
Q Consensus 20 ~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~ 99 (297)
..+-.-...+|.+++.+|+.+.-.+. +........... .+++.+++ +.+++|++.+ -++=++.+=||.+...-
T Consensus 60 ~~Lr~gIVLlG~~l~~~~i~~~G~~~--~~~~~~~v~~~~-~~~~~lg~---r~~~l~~~~~-~Lia~GtsICG~SAi~A 132 (305)
T PF03601_consen 60 KLLRLGIVLLGFRLSFSDILALGWKG--LLIIIIVVILTF-LLTYWLGR---RLFGLDRKLA-ILIAAGTSICGASAIAA 132 (305)
T ss_pred HHHHHHHHHHCccccHHHHHHhCccH--HHHHHHHHHHHH-HHHHHHHH---HHhCCCHHHH-HHHHhhcccchHHHHHH
Confidence 45666667889999999998865443 332222222222 33444442 7789887654 34444555566555432
Q ss_pred ----HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 100 ----TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 100 ----t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll 133 (297)
.+--+.|.+ .++..+.+-..++.+..|..-..+
T Consensus 133 ~a~~i~a~~~~~a-~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 133 TAPVIKAKEEDVA-YAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HcccccCCCCcee-eeehHHHHHHHHHHHHHHHHHHHh
Confidence 233477888 999999999999999999998875
No 56
>PRK03818 putative transporter; Validated
Probab=82.07 E-value=12 Score=37.71 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcccchhhhcc----ccchHHHHHHHHHHHHHhHhch-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 154 VVPIAAGLLLNRFFPRICNAIRP----FLPPLSVLVTACCVGAPLAINI-ESVMSPFGLTILLLIITFHLSAFVAGYVVT 228 (297)
Q Consensus 154 llPl~lG~~lr~~~~~~~~~~~~----~~~~~s~~~llliv~~~~~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~ 228 (297)
--++..|+++-++.+++.-++.+ .++-+...+++..+....+++. +.+.+ .++...+..++.+..+..+++...
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRK-SGLRLNLFAVLIVILGGLVTAILH 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777755443322222 2333333333333333233332 22323 367776777888888888899998
Q ss_pred HhhccCcccccchhheeeeeecccchHHHHHHHH
Q 022453 229 GLAFAEAHDVKALQRTLSYETGMQSSLLALALAN 262 (297)
Q Consensus 229 ~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~ 262 (297)
+.+|++... +...-+|....+-++.-|.
T Consensus 113 ~~~~~~~~~------~~G~~aGa~T~tp~l~aa~ 140 (552)
T PRK03818 113 KLFGIPLPV------MLGIFSGAVTNTPALGAGQ 140 (552)
T ss_pred HHhCCCHHH------HHHHhhccccccHHHHHHH
Confidence 888877654 5555566666655544444
No 57
>PRK04972 putative transporter; Provisional
Probab=81.34 E-value=17 Score=36.62 Aligned_cols=96 Identities=22% Similarity=0.133 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcccchhhhccccchHHHHHHHHHHHHHhHhch-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022453 155 VPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFA 233 (297)
Q Consensus 155 lPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l 233 (297)
-|+..|+++-++-++. .+..+.+...+++..+....+++. +.+.+ .++......++.+..+..+++.+++.+|+
T Consensus 42 g~L~vgl~~g~~~~~~----~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (558)
T PRK04972 42 GVLVVSLLLGQQHFSI----NTDALNLGFMLFIFCVGVEAGPNFFSIFFR-DGKNYLMLALVMVGSALVIALGLGKLFGW 116 (558)
T ss_pred HHHHHHHHHHhCCCCC----ChHHHHHHHHHHHHHHhhhhhHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5566666666654332 222222333333333332233332 22323 36777777788888999999999999988
Q ss_pred CcccccchhheeeeeecccchHHHHHHH
Q 022453 234 EAHDVKALQRTLSYETGMQSSLLALALA 261 (297)
Q Consensus 234 ~~~~~~~~~~al~~~~g~rN~~la~~la 261 (297)
+... +...-+|....+-++.-|
T Consensus 117 ~~~~------~~G~~aGa~T~tp~l~~a 138 (558)
T PRK04972 117 DIGL------TAGMLAGSMTSTPVLVGA 138 (558)
T ss_pred CHHH------HHHHhhccccCcHHHHHH
Confidence 7754 555555555543333333
No 58
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=81.12 E-value=9.9 Score=31.64 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhccc------chhhhccccchHHHHHHHHHHHHHhHhch-HHhhhhhHHHHHHHHHHHHHH-HHHHH
Q 022453 153 VVVPIAAGLLLNRFFPR------ICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFGLTILLLIITFHLS-AFVAG 224 (297)
Q Consensus 153 vllPl~lG~~lr~~~~~------~~~~~~~~~~~~s~~~llliv~~~~~~~~-~~i~~~~~~~~~~~~~~l~~~-~~~~g 224 (297)
.--|+..|+++-++.++ ..+.....++.+....++..+......+. +.+.++.++.......+.... .....
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34566677777665432 11122223333444444443433333332 223232223233222333333 33333
Q ss_pred HHHHHhhccCcccccchhheeeeeecccchHHHHHHHHHhCC
Q 022453 225 YVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ 266 (297)
Q Consensus 225 ~~l~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~ 266 (297)
+...+.+|++.. .+...-+|.+..+-++.-+...-+
T Consensus 104 ~~~~~~~~~~~~------~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 104 VALIKLLRINYA------LTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHhCCCHH------HHHHHHhccccChHHHHHHHHHhc
Confidence 444466766654 466667788877777666665444
No 59
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=80.96 E-value=79 Score=33.40 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHH
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAI 48 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~ 48 (297)
-..+.+..|..|++++.+.+++.++.+..+
T Consensus 76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rL 105 (810)
T TIGR00844 76 RILLCLQVFAVSVELPRKYMLKHWVSVTML 105 (810)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhHHHHHHH
Confidence 368899999999999999998877765543
No 60
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=80.70 E-value=55 Score=31.37 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhh
Q 022453 17 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 95 (297)
Q Consensus 17 ~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~-~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~ 95 (297)
...+.+...++.+-++.|.+++.+.-+|.-. ...+.+...+-.++ ++.+.+ ..++ ++..+..-.+++.-=| .+
T Consensus 56 v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~v-a~~l~~---~~l~-~~~wk~ag~l~gsyiG-Gs 129 (378)
T PF05684_consen 56 VWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVV-AFLLFG---GFLG-PEGWKIAGMLAGSYIG-GS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHh---hccc-chHHHHHHHHHhcccC-ch
Confidence 3456666777777778888888766543322 22333333333433 333321 2223 3344444444444444 44
Q ss_pred HH--HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 022453 96 SN--YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 132 (297)
Q Consensus 96 s~--~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~l 132 (297)
.| ......+-|.+ .=....+.+++.+-+.+.+++.+
T Consensus 130 ~N~~Av~~al~~~~~-~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 130 VNFVAVAEALGVSDS-LFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred hHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 46777777777 77788888999988888877665
No 61
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=79.84 E-value=50 Score=31.32 Aligned_cols=131 Identities=17% Similarity=0.250 Sum_probs=72.6
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhh---hhhccCCchhHHHHHHHHhccCchhhHHHHHHHcCCCCcchHH
Q 022453 36 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI---SVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSI 112 (297)
Q Consensus 36 ~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~---~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~ 112 (297)
|++.|.++.-..+..+...-..+.|.++..+... -+..++.||....+.++-.=+=|-..+..++ .|.+ ...
T Consensus 32 ~~FeeG~~amG~l~l~m~GI~~laP~la~~l~~vi~Pl~~~~GaDPamfa~tiLA~DMGGY~LA~~la----~~~~-~~~ 106 (354)
T PF04346_consen 32 EKFEEGIMAMGPLALSMAGIMALAPVLAAFLSPVIGPLFQAIGADPAMFAGTILANDMGGYQLAMELA----QDPE-AGI 106 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhcCcCHHHHHHHc----CChh-hHH
Confidence 4555555555556777777777888888776521 0144577888887776543333323222222 1222 222
Q ss_pred HH-HHHHHHHH---HHHHHHHHHHHc-------------------------CCccccChHHHHHHHhHHHHHHHHHHHHH
Q 022453 113 VM-TSLSTATA---VFVTPLLSLLLI-------------------------GKRLPVDVKGMVSSILQIVVVPIAAGLLL 163 (297)
Q Consensus 113 ~l-t~~st~l~---~~~~Pl~~~ll~-------------------------~~~~~i~~~~i~~~l~~~vllPl~lG~~l 163 (297)
.. ..+++.++ .+++|+-+...- |--..+|+..++.++.-.+++-+++...+
T Consensus 107 fsG~ilgsmlG~TIvFtIPVaLgii~k~D~~y~a~Gil~GiitIPiG~~vggl~~g~~~~~il~Nl~Pvii~~~lla~GL 186 (354)
T PF04346_consen 107 FSGLILGSMLGATIVFTIPVALGIIEKEDHKYLAKGILAGIITIPIGCFVGGLIAGFDIGMILINLIPVIIFAILLAIGL 186 (354)
T ss_pred HHHHHHHHhhcccEEeehhhhhhhcChhhhHHHHHHHHHHHhhhCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 22222221 234444443321 11235778888889988999999999988
Q ss_pred HHhcccch
Q 022453 164 NRFFPRIC 171 (297)
Q Consensus 164 r~~~~~~~ 171 (297)
++...+..
T Consensus 187 ~~~p~~mI 194 (354)
T PF04346_consen 187 WFFPEKMI 194 (354)
T ss_pred HHhHHHHH
Confidence 87744433
No 62
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=78.80 E-value=12 Score=32.87 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=56.6
Q ss_pred hHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeecccch--HHHHHHHHHhCCCCcc-
Q 022453 194 LAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPLV- 270 (297)
Q Consensus 194 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~--~la~~la~~~f~~p~~- 270 (297)
++.|++.+.++ ...+.....+=...+...++++++.++++++. ..++ .-|+. ++|+.++...-++|..
T Consensus 66 LY~~~~~l~~~-~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~------~~Sl--~pkSVTtpiAi~is~~iGG~~sLt 136 (215)
T PF04172_consen 66 LYRQRRLLKKN-WIPILVGVLVGSLVSIFSAVLLARLLGLSPEI------ILSL--APKSVTTPIAIEISEQIGGIPSLT 136 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH------HHHH--HHHHhhHHHHHHHHHHhCChHHHH
Confidence 46667766664 23344444455567778888999999776643 3333 34555 4555666666666654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022453 271 SVPPAISTVIMSLMGFFLVMLWAKKS 296 (297)
Q Consensus 271 ~lp~~~~~~~q~i~~~~~a~~~~~~~ 296 (297)
+.-+++-+++-.++|..+-.+.|-|+
T Consensus 137 a~~VvitGi~Ga~~g~~llk~~~I~~ 162 (215)
T PF04172_consen 137 AVFVVITGILGAVLGPPLLKLLRIKD 162 (215)
T ss_pred HHHHHHHhhHHHHhHHHHHhHccccc
Confidence 33445556777777776665555443
No 63
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=78.60 E-value=19 Score=31.95 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=55.0
Q ss_pred hHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeecccch--HHHHHHHHHhCCCCcc-
Q 022453 194 LAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPLV- 270 (297)
Q Consensus 194 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~--~la~~la~~~f~~p~~- 270 (297)
.+.|.+.+.++ ...+.....+=...+...++++++.++.+++- ..++ .-|+. ++|+.++...-++|..
T Consensus 76 LY~~~~~lk~~-~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i------~~Sl--~pkSvTtpiAm~vs~~iGG~~sLt 146 (226)
T TIGR00659 76 LYKQLPQIKKY-WKEIILNVAVGSVIAIISGTLLALLLGLGPEI------IASL--LPKSVTTPIAMHVSEMIGGIPAVT 146 (226)
T ss_pred HHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH------HHHh--hhHHhhHHHHHHHHHHhCChHHHH
Confidence 46677766664 23344444444567778889999999776533 3333 34555 4555666666666553
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhc
Q 022453 271 SVPPAISTVIMSLMGFFLVMLWAKK 295 (297)
Q Consensus 271 ~lp~~~~~~~q~i~~~~~a~~~~~~ 295 (297)
+.-+++-+++-.+++..+-.+.|-|
T Consensus 147 a~~vvitGi~Ga~~g~~ll~~~~i~ 171 (226)
T TIGR00659 147 AVFVILTGLLGTVFGPMVLRYFRVK 171 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444555666666666655555433
No 64
>PRK10711 hypothetical protein; Provisional
Probab=78.37 E-value=49 Score=29.48 Aligned_cols=94 Identities=17% Similarity=0.105 Sum_probs=58.4
Q ss_pred HhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeecccch--HHHHHHHHHhCCCCc-
Q 022453 193 PLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPL- 269 (297)
Q Consensus 193 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~--~la~~la~~~f~~p~- 269 (297)
-.+.|.+.+.++ ...+.....+=...+...++.+++.++.|++- ..++ .-|+. ++|+.++...-++|.
T Consensus 76 PLY~q~~~lk~~-~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~------~~Sl--~pkSVTtPIAm~is~~iGG~~sL 146 (231)
T PRK10711 76 PLYEQLHQIRAR-WKSIISICFIGSVVAMVTGTAVALWMGATPEI------AASI--LPKSVTTPIAMAVGGSIGGIPAI 146 (231)
T ss_pred HHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH------HHHH--hhhhhhHHHHHHHHHHhCCcHHH
Confidence 356777777664 33455555555678888899999999776653 2333 23544 556666666666554
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhc
Q 022453 270 VSVPPAISTVIMSLMGFFLVMLWAKK 295 (297)
Q Consensus 270 ~~lp~~~~~~~q~i~~~~~a~~~~~~ 295 (297)
.+.-+++-+++-.++|..+-.+.|-|
T Consensus 147 ta~~ViitGi~Ga~~g~~llk~~rI~ 172 (231)
T PRK10711 147 SAVCVIFVGILGAVFGHTLLNAMRIR 172 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455556677777777765555534
No 65
>PRK03818 putative transporter; Validated
Probab=77.65 E-value=18 Score=36.46 Aligned_cols=53 Identities=19% Similarity=0.063 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccCcccccchhheeeeeecccchHHHHHHHHH
Q 022453 205 FGLTILLLIITFHLSAFVAGYVVT-GLAFAEAHDVKALQRTLSYETGMQSSLLALALANR 263 (297)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~l~-~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~ 263 (297)
.++...+..++.......++++++ +.+|++.. +++..-||.+..+-++.-+..
T Consensus 462 ~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 462 EGLSWIGYGFLITAVPLLIVGILARMLAKMNYL------TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------HHHHHHhccCCCcHHHHHHhc
Confidence 356666666777777778888887 45766654 366666777776666655554
No 66
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=76.53 E-value=16 Score=34.10 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhH
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPI 80 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~ 80 (297)
.+..+.+..|.+|.+++.+|+.+.- .+.+..++....+- =..++.+. ++++.|+..
T Consensus 194 i~f~I~f~~f~LG~~lnl~~I~~~G--~~GIlL~v~vv~~t-~~~~~~i~----rllg~~~~~ 249 (312)
T PRK12460 194 GPLLIPFFAFALGAGINLSMLLQAG--LAGILLGVLVTIVT-GFFNIFAD----RLVGGTGIA 249 (312)
T ss_pred ceEeHHHHHHHhcCCeeHHHHHHhC--hHHHHHHHHHHHHH-HHHHHHHH----HHhCCChhH
Confidence 4446666777788888888876653 23444444433222 23344444 455665544
No 67
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=75.86 E-value=40 Score=34.52 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch--hHHHHHHHHhccCchhhH
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT--PIGAGIMLVSCVSGAQLS 96 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~--~~~~gl~l~~~~P~~~~s 96 (297)
..++.+-+...|++++.+.+.+ +|..++...+.-++..++..+..+ +.++.+. ....|+ ..+++|-.+
T Consensus 271 ~lll~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~----~~~g~~~~~a~~~gl---~L~~~Gef~ 340 (621)
T PRK03562 271 GLLLGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLA----RPLGVPRKQRRWFAV---LLGQGGEFA 340 (621)
T ss_pred HHHHHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHhHHHHHHH---HHhccccHH
Confidence 3456666678999999987754 455454445556777888888887 7777754 444444 446677776
Q ss_pred HHHHHHc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 97 NYATFLT--DPPLAPLSIVMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 97 ~~~t~~~--~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll 133 (297)
.+....+ .|-.++-.........+++.+++|++..++
T Consensus 341 ~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 341 FVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLL 379 (621)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5543332 332221222222345677888888876653
No 68
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=75.16 E-value=74 Score=29.87 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH-hccCchhhHH
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLV-SCVSGAQLSN 97 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~-~~~P~~~~s~ 97 (297)
...-..+|+.+|++=-.+--+..+..-.......+.-=++.|+.+|.+.| ++.++|..-+.++.-- ++....+...
T Consensus 27 k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~~~~iLr---~~~~l~~~daaAiAAhYGSVSavTF~~ 103 (327)
T PF05982_consen 27 KFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLIAFPILR---RLGKLDRADAAAIAAHYGSVSAVTFAA 103 (327)
T ss_pred HHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccCCChhhHHHHHHHcCchHHHHHHH
Confidence 33445566777765332222111111111122222234678999998874 6678877666665443 4444555556
Q ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHH------HHcCCc-----------------cccChHHHHHHHhH---
Q 022453 98 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSL------LLIGKR-----------------LPVDVKGMVSSILQ--- 151 (297)
Q Consensus 98 ~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~------ll~~~~-----------------~~i~~~~i~~~l~~--- 151 (297)
..+++..-+.+ ..-.|+.. ++..-.|-++. +..+++ -+.+..++..+.+.
T Consensus 104 a~~~L~~~gi~-yeg~m~a~---~alME~PAIival~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~~~s 179 (327)
T PF05982_consen 104 ALAFLESQGIS-YEGYMVAL---LALMESPAIIVALLLARLFSRKQAAGATASSTRVGAGSGHEGISWGELLHESLTNKS 179 (327)
T ss_pred HHHHHHHCCCC-ccccHHHH---HHHHhhhHHHHHHHHHHHHhccccccccCCccccccccccccccHHHHHHHHHcCch
Confidence 67777776777 66666544 33334444332 121111 12456666655533
Q ss_pred --HHHHHHHHHHHHHHhcccchhhhccccchH--HHHHHHHH-HHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022453 152 --IVVVPIAAGLLLNRFFPRICNAIRPFLPPL--SVLVTACC-VGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYV 226 (297)
Q Consensus 152 --~vllPl~lG~~lr~~~~~~~~~~~~~~~~~--s~~~llli-v~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~ 226 (297)
..+-=+++|++.+ |+-.+++++..... ..+++.+. .....+++-+++.+ .+|..+...+++++++-.+|..
T Consensus 180 v~LLlGgliIG~~~g---~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~-~g~~li~Fgi~~Pli~a~ig~~ 255 (327)
T PF05982_consen 180 VVLLLGGLIIGFLAG---PEGVESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRK-VGWFLIAFGILMPLINALIGIG 255 (327)
T ss_pred HHHHHHHHHHhheeC---ccchhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555443 33344555544332 23444443 33444555555544 4677777788999999999999
Q ss_pred HHHhhccCccc
Q 022453 227 VTGLAFAEAHD 237 (297)
Q Consensus 227 l~~~~~l~~~~ 237 (297)
+++..+++..+
T Consensus 256 lg~~~gls~Gg 266 (327)
T PF05982_consen 256 LGWLLGLSPGG 266 (327)
T ss_pred HHHHhCCCCcc
Confidence 99999998887
No 69
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=73.40 E-value=68 Score=28.63 Aligned_cols=94 Identities=19% Similarity=0.111 Sum_probs=57.7
Q ss_pred HhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeecccch--HHHHHHHHHhCCCCc-
Q 022453 193 PLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPL- 269 (297)
Q Consensus 193 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~--~la~~la~~~f~~p~- 269 (297)
-++.|.+.+.++ .+.+.....+=...++..++.+++.++.|++- ..++ .-|+. ++|+.++...-++|.
T Consensus 81 PLY~q~~~lk~~-~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~------~~Sl--~pKSVTtPIAm~is~~iGG~psL 151 (232)
T PRK04288 81 PLYKKRDVLKKY-WWQILGGIVVGSVCSVLIIYLVAKLIQLDNAV------MASM--LPQAATTAIALPVSAGIGGIKEI 151 (232)
T ss_pred HHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH------HHHH--hhHhhhHHHHHHHHHHhCCcHHH
Confidence 356777777664 33444555555677888899999999777643 2222 23555 556666666666655
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhc
Q 022453 270 VSVPPAISTVIMSLMGFFLVMLWAKK 295 (297)
Q Consensus 270 ~~lp~~~~~~~q~i~~~~~a~~~~~~ 295 (297)
.+.-+++-+++-.+.|..+-.+.|-|
T Consensus 152 tA~~ViitGi~Gai~g~~llk~~~I~ 177 (232)
T PRK04288 152 TSFAVIFNAVIIYALGAKFLKLFRIK 177 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445556666677776665555544
No 70
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=72.97 E-value=1.1e+02 Score=30.70 Aligned_cols=27 Identities=22% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcC
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKR 44 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~ 44 (297)
....+..++|..|.+++.+++++..+.
T Consensus 52 ~~~~Lp~lLF~~g~~~~~~~l~~~~~~ 78 (525)
T TIGR00831 52 LFLFLPPLLFEAAMNTDLRELRENFRP 78 (525)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 346788999999999999999876553
No 71
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=67.91 E-value=83 Score=27.45 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCC--------ccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhccccchH
Q 022453 110 LSIVMTSLSTATAVFVTPLLSLLLIGK--------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 181 (297)
Q Consensus 110 ls~~lt~~st~l~~~~~Pl~~~ll~~~--------~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~ 181 (297)
..++.+.+.++-+.+.-++.-.++... +.+.++..+...+..+-.+=..+-+++|++.|+..+.+..+++.+
T Consensus 41 mGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI 120 (202)
T PRK02830 41 LGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLPLI 120 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455555555555555555544433221 133344344433344444455678889999999999999988877
Q ss_pred HHHHHHHH
Q 022453 182 SVLVTACC 189 (297)
Q Consensus 182 s~~~llli 189 (297)
..=|.++-
T Consensus 121 ~~NCaVLG 128 (202)
T PRK02830 121 TVNCAIFG 128 (202)
T ss_pred HHHHHHHH
Confidence 55444443
No 72
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=67.12 E-value=1.4e+02 Score=30.34 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 98 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~ 98 (297)
..++.+.+...|++++.+.+.+ ++..+....+..++..++..+..+ +.++.+...+..+- ....|.|-.+.+
T Consensus 268 ~lll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~----~~~g~~~~~al~~g-~~L~~~Gef~~v 339 (601)
T PRK03659 268 GLLLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLA----RLYGLRSSERMQFA-GVLSQGGEFAFV 339 (601)
T ss_pred HHHHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHH-HHHhccccHHHH
Confidence 4566666778999999987764 455555555556778888888887 77777654433222 235777877765
Q ss_pred HHHHc--CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 022453 99 ATFLT--DPPLAPLSIVMTSLSTATAVFVTPLLSLL 132 (297)
Q Consensus 99 ~t~~~--~Gd~~~ls~~lt~~st~l~~~~~Pl~~~l 132 (297)
....+ .|-.++-.........+++.+.+|++...
T Consensus 340 l~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~ 375 (601)
T PRK03659 340 LFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL 375 (601)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332 33333122222345566667778876654
No 73
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=65.42 E-value=1e+02 Score=27.65 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc-------C---CccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhccccc
Q 022453 110 LSIVMTSLSTATAVFVTPLLSLLLI-------G---KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLP 179 (297)
Q Consensus 110 ls~~lt~~st~l~~~~~Pl~~~ll~-------~---~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~ 179 (297)
..++.+.+.++-+++.-++.-.+.. + +.++.++..+..-++++-.+=..+-+.+|++.|+.-+.+..+++
T Consensus 48 MGlAvtfVl~~S~~i~~~l~~~Il~p~a~~~~~~~~~~~~l~~Lr~ivfIlvIA~~Vq~vem~L~a~~p~Ly~aLGifLP 127 (244)
T PRK01061 48 LGMSVALVLTVTGSINWFVHAFITGPGALTWLSPALANVNLSFLELIIFIVVIAAFTQILELLLEKVSRNLYLSLGIFLP 127 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence 4455555555555555555332221 1 12234444444333343344456778899999999998988888
Q ss_pred hHHHHHHHH
Q 022453 180 PLSVLVTAC 188 (297)
Q Consensus 180 ~~s~~~lll 188 (297)
.+..=|.++
T Consensus 128 LIttNCaVL 136 (244)
T PRK01061 128 LIAVNCAIL 136 (244)
T ss_pred HHHHHHHHH
Confidence 775544444
No 74
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=61.88 E-value=1.1e+02 Score=26.67 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc----CCccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhccccchHHHHH
Q 022453 110 LSIVMTSLSTATAVFVTPLLSLLLI----GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 185 (297)
Q Consensus 110 ls~~lt~~st~l~~~~~Pl~~~ll~----~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~ 185 (297)
..++.+.+.++-++..-++.-.++. .+.+++++..+...+..+=.+=...-+.+|++.|+..+.+..+.+.+..=|
T Consensus 42 mGlAvtfVl~~s~~~~~~i~~~il~p~~l~~~~~i~~Lr~~~fIlvIA~~V~~ve~~l~a~~p~Ly~~LGiflpLI~tNC 121 (199)
T PRK12456 42 LGLTVTALLAIATPLNNLIYTYILRENALIDGVDLSFLDFITFIGVLAALVQILEMVLERFLPSLHHTLGAFLPLLTIHC 121 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 4455555555555555554433322 122333333333333333333456778899999999998888888765444
Q ss_pred HHH
Q 022453 186 TAC 188 (297)
Q Consensus 186 lll 188 (297)
.++
T Consensus 122 aVL 124 (199)
T PRK12456 122 AIF 124 (199)
T ss_pred HHH
Confidence 444
No 75
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=61.62 E-value=40 Score=31.15 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=59.2
Q ss_pred HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHHHHcC
Q 022453 25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTD 104 (297)
Q Consensus 25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~ 104 (297)
++++.|...| +...+.+||-++.|-..|+.+.-.. ..+ ...+.++..+..+-+.+..=|.++-.+-+.++.
T Consensus 90 IFmGvGAmTD---FgpllanPktllLGaAAQ~GIF~t~--~~A----~~lgf~~~eAasIgIIGGADGPTaIy~t~~LAP 160 (375)
T COG1883 90 IFMGVGAMTD---FGPLLANPKTLLLGAAAQFGIFATV--FGA----LALGFTPKEAASIGIIGGADGPTAIYLTNKLAP 160 (375)
T ss_pred HHhccchhcc---cchhhcCcHHHHhhhHHHhchHHHH--HHH----HHhCCCHhhhhheeeeccCCCCceEEeccccCH
Confidence 3456666555 4556789999999999999876433 222 456777777777777777665554443333332
Q ss_pred CCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453 105 PPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 135 (297)
Q Consensus 105 Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~ 135 (297)
|.- -+++..+-| ..+-++.=|.....+..
T Consensus 161 -~Ll-~~iAvAAYSYMALVPiIQPpimkaLTt 190 (375)
T COG1883 161 -ELL-GAIAVAAYSYMALVPIIQPPIMKALTT 190 (375)
T ss_pred -HHH-HHHHHHHHHHHHHhhhcccHHHHHhcC
Confidence 222 222222222 33456666777777753
No 76
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=56.22 E-value=1.8e+02 Score=27.42 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH-
Q 022453 20 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY- 98 (297)
Q Consensus 20 ~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~- 98 (297)
..+-.-...+|.+++.+|+.+.-.+ .+........... ..++.+++ +.+++|++.+ -++=.+++=||.+...
T Consensus 66 ~lLr~gIVLlG~~l~~~~i~~~G~~--~l~~~~~~v~~~~-~~~~~~g~---k~l~l~~~~~-~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 66 FLLRIGITLYGFRLTFPYIADVGPN--EIVADTLILTSTF-FLTVFLGS---SRLKLDKQMS-ILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHHHHHHHHCccccHHHHHHhhHH--HHHHHHHHHHHHH-HHHHHHHH---HHhCCChhHH-HHHHcchhHHHHHHHHH
Confidence 4566666778999999998776443 2222222222222 22233331 5788877654 2333333444444432
Q ss_pred H---HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHc
Q 022453 99 A---TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 134 (297)
Q Consensus 99 ~---t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~ 134 (297)
. .+--+-|.+ ++++.+.+-..++.+..|....++.
T Consensus 139 ~a~~i~A~~~~~a-~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 139 IEPVIKAEKEKVS-VAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred hccccCCCcccee-eeehHHHHHHHHHHHHHHHHHHHHc
Confidence 1 233467788 9999999999999999999987663
No 77
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=56.13 E-value=1.4e+02 Score=26.05 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc--------CCccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhccccchH
Q 022453 110 LSIVMTSLSTATAVFVTPLLSLLLI--------GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 181 (297)
Q Consensus 110 ls~~lt~~st~l~~~~~Pl~~~ll~--------~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~ 181 (297)
..++.+.+.++-+.+.-++.-.+.. .++++..+..+..-+..+-.+=...-+.+|++.|+..+.+..+.+.+
T Consensus 40 mGlAvtfV~~~s~~~~~~i~~~il~p~~~~~~~~~~~~l~~Lr~~~fIlvIA~~V~~vem~l~a~~p~ly~~LGiflpLI 119 (200)
T TIGR01940 40 LGVAVTFVLTITVPINNLIYTYILKDGALSWGGPAEVDLSFLELITFIGVIAALVQILEMVLERFSPSLYNALGIFLPLI 119 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 4444455555555555444333221 11133333333333333333344577889999999988888888877
Q ss_pred HHHHHHHH
Q 022453 182 SVLVTACC 189 (297)
Q Consensus 182 s~~~llli 189 (297)
..=|.++-
T Consensus 120 ~tNCaVLG 127 (200)
T TIGR01940 120 TVNCAIFG 127 (200)
T ss_pred HHHHHHHH
Confidence 55444443
No 78
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=53.84 E-value=1.4e+02 Score=25.54 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHH--hHHHHHHHHHHHHHHHhcccchh
Q 022453 110 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSI--LQIVVVPIAAGLLLNRFFPRICN 172 (297)
Q Consensus 110 ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l--~~~vllPl~lG~~lr~~~~~~~~ 172 (297)
.......++.+++.++.|+....+..++ .........+ ....+.-..++..+.|..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~il~r~l~~~~--~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~ 69 (273)
T PF01943_consen 7 WLFLSNILSALIGFITIPILARYLGPEE--YGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKD 69 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHH--hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 4556677888999999999988774332 2222333222 22334456667777776655444
No 79
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=53.19 E-value=59 Score=30.30 Aligned_cols=111 Identities=19% Similarity=0.177 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcccchhhhccccchH--HHHHHHHHHHHHhHhc-----hHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022453 152 IVVVPIAAGLLLNRFFPRICNAIRPFLPPL--SVLVTACCVGAPLAIN-----IESVMSPFGLTILLLIITFHLSAFVAG 224 (297)
Q Consensus 152 ~vllPl~lG~~lr~~~~~~~~~~~~~~~~~--s~~~llliv~~~~~~~-----~~~i~~~~~~~~~~~~~~l~~~~~~~g 224 (297)
+.++|+.+|.+++.++|+.-|.+..+-.-+ +...++-+.....+.+ ....... -....+.=...+..+|
T Consensus 14 ~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkk----g~~ll~~K~~~~~~lg 89 (314)
T PF03812_consen 14 MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKK----GGVLLLVKFIIGALLG 89 (314)
T ss_pred eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHh----hhHHHHHHHHHHHHHH
Confidence 568999999999999999765333222111 1111111111111111 1122221 1111233345677788
Q ss_pred HHHHHhhccCcc-cc---cchhheeeeeecccchHHHHHHHHHhCC
Q 022453 225 YVVTGLAFAEAH-DV---KALQRTLSYETGMQSSLLALALANRFFQ 266 (297)
Q Consensus 225 ~~l~~~~~l~~~-~~---~~~~~al~~~~g~rN~~la~~la~~~f~ 266 (297)
+.+++.++.+-- +. --+..++.-+....|.++=+.+...|-+
T Consensus 90 l~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd 135 (314)
T PF03812_consen 90 LLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD 135 (314)
T ss_pred HHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC
Confidence 888888754310 00 0012233333445566776677777654
No 80
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=51.24 E-value=1.5e+02 Score=29.99 Aligned_cols=13 Identities=31% Similarity=0.191 Sum_probs=8.3
Q ss_pred ccchHHHHHHHHH
Q 022453 251 MQSSLLALALANR 263 (297)
Q Consensus 251 ~rN~~la~~la~~ 263 (297)
+|+.++++.++..
T Consensus 449 l~~~GL~lFla~v 461 (562)
T TIGR03802 449 LKDLGLALFIAVV 461 (562)
T ss_pred HHHHhHHHHHHHH
Confidence 5666777776654
No 81
>COG2855 Predicted membrane protein [Function unknown]
Probab=50.48 E-value=2.2e+02 Score=26.81 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 98 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~ 98 (297)
..++-+-....|.+++.+|+.+.-.+--.+ ..+.....=+.++.++ +.+++|...+ -++=+++.=||.+...
T Consensus 69 k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~---~~~~l~~t~~~~~~lg----~~lgld~~~a-~Lia~GssICGasAia 140 (334)
T COG2855 69 KKLLRLGIVLLGFRLTLSDIADVGGSGVLI---IAITLSSTFLFAYFLG----KLLGLDKKLA-LLIAAGSSICGASAIA 140 (334)
T ss_pred HHHHHHHHHHHcceeeHHHHHHcCccHHHH---HHHHHHHHHHHHHHHH----HHhCCCHHHH-HHHHccchhhHHHHHH
Confidence 446666666789999999998875543222 2223333345567777 7889987766 3444455556665543
Q ss_pred H----HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 99 A----TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 99 ~----t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll 133 (297)
- ++--+-|++ .++..+.+-..++.+..|..-.++
T Consensus 141 A~~pvika~~~eva-~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 141 ATAPVIKAEEEEVA-VAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred HhCCcCCCCccccc-eehhhHHHHHHHHHHHHHHHHHHh
Confidence 2 345577888 999999999999999999988875
No 82
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=48.87 E-value=1.8e+02 Score=25.20 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhccccchHHHHHHHHH
Q 022453 110 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACC 189 (297)
Q Consensus 110 ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llli 189 (297)
..++.+.+.++-++..-++.=.+. ...+.+...+...+..+-.+=...-+.+|++.|+..+.+..+.+.+..=|.++-
T Consensus 41 mGlav~fV~~~s~~~~~~i~~~il--~p~~l~~lr~~~fIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI~tNCaVLG 118 (193)
T PRK05151 41 MGLATTFVLTLASICAWLVNTYIL--IPLDLIYLRTLAFILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLG 118 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHH
Confidence 445555555555555544433322 112233333333333333344456778999999998888888877655444443
No 83
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=48.52 E-value=34 Score=32.63 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeecccch---HHHHHHHHHh-----CCCCc-chhhHHHHHHHHHH
Q 022453 213 IITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS---LLALALANRF-----FQDPL-VSVPPAISTVIMSL 283 (297)
Q Consensus 213 ~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~---~la~~la~~~-----f~~p~-~~lp~~~~~~~q~i 283 (297)
+.+-...|..+||++.+.+|.+++. |.=...+|+.+|. .+++.-|... |+|++ ..---+.|..+-+-
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~----~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~ 157 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQL----RGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQ 157 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhh----cCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHH
Confidence 3445578889999999999888777 5555566777877 3444444332 23333 23333456655555
Q ss_pred HHHHH
Q 022453 284 MGFFL 288 (297)
Q Consensus 284 ~~~~~ 288 (297)
.|.++
T Consensus 158 lg~il 162 (408)
T KOG2722|consen 158 LGQIL 162 (408)
T ss_pred hhhhE
Confidence 66654
No 84
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=46.14 E-value=3.3e+02 Score=27.54 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHH
Q 022453 18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIF 66 (297)
Q Consensus 18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~-~~~~l~~~~v~~Plla~~l 66 (297)
....+..++|..|.+++.+++++.++.--. -..|.+.+.+++-...+.+
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999988765321 2334444555554444443
No 85
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=44.25 E-value=1.3e+02 Score=24.70 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccc
Q 022453 210 LLLIITFHLSAFVAGYVVTGLAFAEAHD 237 (297)
Q Consensus 210 ~~~~~~l~~~~~~~g~~l~~~~~l~~~~ 237 (297)
+...+.....++..+|++.|..+.|..+
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~t 107 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLT 107 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444555667888899999988666544
No 86
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=44.15 E-value=35 Score=23.89 Aligned_cols=35 Identities=23% Similarity=0.547 Sum_probs=24.1
Q ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhc
Q 022453 141 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIR 175 (297)
Q Consensus 141 ~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~ 175 (297)
+..++++-+.+..++=+-+|...|++.|++-+.+.
T Consensus 2 ~i~DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr 36 (62)
T PF11120_consen 2 NISDIIQIIILCALIFFPLGYLARRWLPRIRRTLR 36 (62)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 34455555566666666789999999998765444
No 87
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=43.94 E-value=2.1e+02 Score=24.60 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcccchhhhccccchHHHHHHHH
Q 022453 155 VPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 188 (297)
Q Consensus 155 lPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~lll 188 (297)
+=..+-+.+|++.|+..+.+..+.+.+..=|.++
T Consensus 82 ~v~~v~~~l~~~~p~l~~~LgiylpLi~~Nc~VL 115 (190)
T PF02508_consen 82 LVQLVEMVLRAYFPSLYKALGIYLPLITVNCAVL 115 (190)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHhhhHHHHHHHHH
Confidence 3345778899999999888888877665444433
No 88
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=35.71 E-value=4.2e+02 Score=25.73 Aligned_cols=145 Identities=13% Similarity=0.195 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhc-cCchhh
Q 022453 17 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSC-VSGAQL 95 (297)
Q Consensus 17 ~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~-~P~~~~ 95 (297)
.....+..+.|.-|.+++.++++++.+.-. .......++-.=..++.. +++++ +-+.+.++.+-++ +|+.+.
T Consensus 62 ~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~--~La~~~v~it~~~~g~~~----~~l~~-~i~~~~a~l~gAilspTDPv 134 (429)
T COG0025 62 FLVLFLAILLFAGGLELDLRELRRVWRSIL--VLALPLVLITALGIGLLA----HWLLP-GIPLAAAFLLGAILSPTDPV 134 (429)
T ss_pred HHHHHHHHHHHHhHhcCCHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHH----HHHhC-ChhHHHHHHHhHHhcCCCch
Confidence 346789999999999999999987755322 111211122111223332 14444 4555666666555 666654
Q ss_pred HH-HHHHHcCCCCcchHHHHH---HHHHHHHHHHHHHHHHHHcCC-ccc--cChHHHHHHHhHHHHHHHHHHHHHHHhcc
Q 022453 96 SN-YATFLTDPPLAPLSIVMT---SLSTATAVFVTPLLSLLLIGK-RLP--VDVKGMVSSILQIVVVPIAAGLLLNRFFP 168 (297)
Q Consensus 96 s~-~~t~~~~Gd~~~ls~~lt---~~st~l~~~~~Pl~~~ll~~~-~~~--i~~~~i~~~l~~~vllPl~lG~~lr~~~~ 168 (297)
+. -..+..+=+.. .+..+. .++--.+++..=+.+....++ +.+ -...+.......-+.+=..+|...++...
T Consensus 135 ~v~~i~~~~~vp~r-i~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~ 213 (429)
T COG0025 135 AVSPIFKRVRVPKR-IRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLR 213 (429)
T ss_pred hhHHHHhcCCCCHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23333444444 444332 456666666666666655532 221 22233444444555566666666665544
Q ss_pred c
Q 022453 169 R 169 (297)
Q Consensus 169 ~ 169 (297)
+
T Consensus 214 ~ 214 (429)
T COG0025 214 R 214 (429)
T ss_pred H
Confidence 3
No 89
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=34.72 E-value=3e+02 Score=23.67 Aligned_cols=110 Identities=20% Similarity=0.273 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCHH--HHHHHh-cChhHHHHHHHHHHHHHHHH-HHHHHhhhhhccCCchhHHHHHHHHhcc
Q 022453 15 ARYYAPALGFLMFAVGVNSSEK--DFIEAF-KRPAAIFAGYVGQFVVKPIL-GYIFGTISVSVFGLPTPIGAGIMLVSCV 90 (297)
Q Consensus 15 ~~~~~~~l~~~mf~~gl~l~~~--~~~~~~-~~p~~~~~~l~~~~v~~Pll-a~~l~~~~~~~~~l~~~~~~gl~l~~~~ 90 (297)
+....+.+.+++|.+|.++..+ .+++.. .++|.+...+.. ++--++ ++... .+++.+... ++.+-+..
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t--IlGSllgg~l~~----~ll~~~~~~--~lav~sG~ 94 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT--ILGSLLGGLLAS----LLLGLSLKE--SLAVASGF 94 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHH----HHhcCCHHH--HHHHHccC
Confidence 4667889999999999998765 333333 234444433332 112222 33333 555555333 33222221
Q ss_pred CchhhH-HHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 022453 91 SGAQLS-NYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 132 (297)
Q Consensus 91 P~~~~s-~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~l 132 (297)
===..| ...+...+-+..-.+...-..==+++.+.+|+....
T Consensus 95 GwYSlsg~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r~ 137 (191)
T PF03956_consen 95 GWYSLSGVLITQLYGPELGTIAFLSNLFREILAIILIPLLARY 137 (191)
T ss_pred cHHHhHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111223 344554333222011111122235799999999884
No 90
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=32.90 E-value=3.2e+02 Score=23.55 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhccccchHHHHHHHHH
Q 022453 110 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACC 189 (297)
Q Consensus 110 ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llli 189 (297)
.+++.+.+.++-+...-++.=.+ -+..+.++..+..-+..+-.+=...-+.+|++.|+..+.+..+.+.+..=|.++-
T Consensus 40 mGlav~~V~~~s~~~~~~i~~~i--l~p~~l~~lr~~~filvIA~~V~~ve~~l~~~~p~ly~~LGiflpLI~tNCaVLG 117 (190)
T TIGR01943 40 MGLAVTFVMTLASVISWLVYNFI--LDPLNLEFLRTIVFILVIAALVQFVEMVVRKTSPDLYRALGIFLPLITTNCAVLG 117 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhhhhhHHHHHHHHHH
Confidence 44444444444444443332221 2223333444433333333344557788999999999999888887755444443
No 91
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=31.74 E-value=5e+02 Score=25.74 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhcccchhhhcc
Q 022453 152 IVVVPIAAGLLLNRFFPRICNAIRP 176 (297)
Q Consensus 152 ~vllPl~lG~~lr~~~~~~~~~~~~ 176 (297)
.-++|.++...+-.+..|+.+|+.|
T Consensus 219 ssViPiil~v~~~s~vek~~~K~~P 243 (472)
T PRK09796 219 YTVIPALVMTWCLSYIERWVDRITP 243 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCH
Confidence 3456666666666666665555444
No 92
>COG2985 Predicted permease [General function prediction only]
Probab=30.60 E-value=5.3e+02 Score=25.85 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022453 152 IVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLA 231 (297)
Q Consensus 152 ~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~ 231 (297)
...-++..|.++.++-.+.......+ -++...++..+..-.+++........|++....++++...+....|.+.+.+
T Consensus 36 ~l~g~L~Vgl~l~~~~~~i~~~~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi~~~~~a~~l~k~~ 113 (544)
T COG2985 36 VLFGVLFVGLFLGQYGFTINTDMLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVIAALLLAWVLHKLF 113 (544)
T ss_pred chhhHhHHHHHhcccccccccchhhh--hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667778888888766655444333 2333333333333344444333333577766666666777888889999998
Q ss_pred ccCcccccchhheeeeeecccch-HHHHHH
Q 022453 232 FAEAHDVKALQRTLSYETGMQSS-LLALAL 260 (297)
Q Consensus 232 ~l~~~~~~~~~~al~~~~g~rN~-~la~~l 260 (297)
+.|.+- .+=.++-+.-|+ +++.+.
T Consensus 114 ~~~~~~-----~~Gm~sGAlTsTP~L~aa~ 138 (544)
T COG2985 114 GIDLGL-----IAGMFSGALTSTPGLGAAQ 138 (544)
T ss_pred CCCHHH-----hhhhhcccccCCchhHHHH
Confidence 777653 455555556666 444443
No 93
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=30.25 E-value=5.7e+02 Score=25.57 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc--hhHHHHHHHHhccCchhhHH
Q 022453 20 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQLSN 97 (297)
Q Consensus 20 ~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~--~~~~~gl~l~~~~P~~~~s~ 97 (297)
..+.+.+...|++++...+.+ ++......++..++..++..+..+ +.++.+ .....|+. .++.|..+.
T Consensus 280 ~f~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~----~~~g~~~~~a~~~gl~---l~~~Gef~l 349 (558)
T PRK10669 280 AFAVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLV----RLFGHSRRTALTIAAS---LAQIGEFAF 349 (558)
T ss_pred HHHHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHhCCChhhHHHHHHH---HhcccchHH
Confidence 355555668899999888754 344444444445666666666665 556544 44444444 355566665
Q ss_pred HHHHH--cCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 022453 98 YATFL--TDPPLAPLSIVMTSLSTATAVFVTPLLSLL 132 (297)
Q Consensus 98 ~~t~~--~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~l 132 (297)
+.... ..|-.++-.-......++++.+.+|++...
T Consensus 350 ii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 350 ILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54333 344444233334555667777778876654
No 94
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=28.20 E-value=1.5e+02 Score=28.21 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCch-
Q 022453 16 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA- 93 (297)
Q Consensus 16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~-~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~- 93 (297)
.+....++.+.-+.=+++|.+-+.+.+.|--. ++.+.+..+.. +...+ .+++.++..+.=.+.+=.+-||
T Consensus 25 ~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~----g~lvG----~l~G~~~~~~~~~i~lPIm~GG~ 96 (347)
T TIGR00783 25 NFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIV----GILVG----TLFGLGFDHSLMYIVMPIMAGGV 96 (347)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHcCCCHhHhhheeeehhcCCCc
Confidence 34566777778888889999999888776332 34444444433 33444 5556665555444443344443
Q ss_pred -----hhHHHHHHHcCCCCcch----HHHHHHHHHHHHHHHHHHHHHH
Q 022453 94 -----QLSNYATFLTDPPLAPL----SIVMTSLSTATAVFVTPLLSLL 132 (297)
Q Consensus 94 -----~~s~~~t~~~~Gd~~~l----s~~lt~~st~l~~~~~Pl~~~l 132 (297)
+.|..++...+.|.+ - .+-...+.++++++.--++-.+
T Consensus 97 GaGavPLS~~Y~~~~g~~~~-~~~s~~ip~~~igni~AIi~agll~~l 143 (347)
T TIGR00783 97 GAGIVPLSIIYSAITGRSSE-EIFSQLIPAVIIGNIFAIICAGLLSRI 143 (347)
T ss_pred ccchhhHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888877765 3 2334556777777776665443
No 95
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=27.14 E-value=1.1e+02 Score=16.68 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 022453 151 QIVVVPIAAGLLLNRF 166 (297)
Q Consensus 151 ~~vllPl~lG~~lr~~ 166 (297)
..++.|++.|..++-.
T Consensus 2 ~~iIaPi~VGvvl~l~ 17 (21)
T PF13955_consen 2 TTIIAPIVVGVVLTLF 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHH
Confidence 3577899999888743
No 96
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=27.07 E-value=7.1e+02 Score=26.55 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH
Q 022453 19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 98 (297)
Q Consensus 19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~ 98 (297)
..++.+-+...|++++.+.+.+. ..........+..++..-+.+++.+ +.++.+...+..+-+...+=| -...+
T Consensus 325 ~lflPlFFv~vGl~idl~~l~~~-~~~~~~~~liv~a~~gK~~g~~l~a----~~~g~~~~eal~lG~lm~~kG-~~~Li 398 (832)
T PLN03159 325 GLLLPLFFAISGLKTNVTKIQGP-ATWGLLVLVIIMASAGKIMGTIIIA----FFYTMPFREGITLGFLMNTKG-LVEMI 398 (832)
T ss_pred HHHHHHHHHHhhheeeHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHHHHhccc-HHHHH
Confidence 34556666688999999776321 0111111112222333334444444 566665444443333334334 33322
Q ss_pred H--HHHcCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHH
Q 022453 99 A--TFLTDPPLAP-LSIVMTSLSTATAVFVTPLLSLLL 133 (297)
Q Consensus 99 ~--t~~~~Gd~~~-ls~~lt~~st~l~~~~~Pl~~~ll 133 (297)
. .....|-.+. .-..++....+.+.++.|++..++
T Consensus 399 i~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 399 VLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred HHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2223343320 222223333456778888877665
No 97
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=26.86 E-value=2.4e+02 Score=26.37 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 022453 152 IVVVPIAAGLLLNR 165 (297)
Q Consensus 152 ~vllPl~lG~~lr~ 165 (297)
.++.|++.++..||
T Consensus 299 aiL~Pilta~~~kr 312 (314)
T TIGR00793 299 SLLVPIATVWWSKK 312 (314)
T ss_pred HHHHHHHHHHHHHh
Confidence 55667776666665
No 98
>PF03253 UT: Urea transporter; InterPro: IPR004937 Proteins in this entry include low-affinity urea transporters found in the erythrocytes and kidneys of higher organisms. The erythrocyte proteins carry the clinically important Kidd (Jk) blood group antigens which help determine blood type. The two commonest forms are Jk(a) and Jk(b), which arise from a single residue variation at position 280; aspartate in Jk(a) and asparagine in Jk(b) []. A much rarer phenotype, Jk(null), arises when the protein is not expressed on the erythrocyte surface, and is linked to a urine-concentrating defect []. The Kidd blood group is clinically significant as Jk antibodies can cause acute transfusion reactions and haemolytic disease of the newborn (HDN), where the mother's body creates antibodies against the foetal blood cells. HDN associated with Jk antibodies is generally mild, but fatal cases can occur []. The bacterial proteins in this entry also appear to be involved in urea transport, promoting its entry into the cell []. This uptake of urea can be advantageous for bacteria as its hydrolysis by urease generates ammonium which is an efficient source of nitrogen and, through its buffering capacity, can also provide resistance to acidic conditions.; GO: 0015204 urea transmembrane transporter activity, 0071918 urea transmembrane transport, 0016021 integral to membrane; PDB: 3M6E_A 3K3G_A 3ME1_B 3K3F_A.
Probab=26.11 E-value=2.4e+02 Score=26.05 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhccCcccccchhheeeeeecccchHH-HHHHHHHhCC-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 022453 216 FHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLL-ALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWA 293 (297)
Q Consensus 216 l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~~l-a~~la~~~f~-~p~~~lp~~~~~~~q~i~~~~~a~~~~ 293 (297)
..+.+-..+...++.+|.|++| . .-.. -|. |..+ ++++.. +++ ++...+...+......++...+....+
T Consensus 39 ~~llg~~~stltA~ll~~~~~~----i-~~GL-~Gf-Ng~LvG~al~~-f~~~~~~~~~l~~~ga~ls~~v~~~l~~~~~ 110 (301)
T PF03253_consen 39 GALLGALISTLTARLLGYDRDD----I-RNGL-YGF-NGALVGLALGV-FLPPSPLSWLLIILGAILSTIVTAALSRLLK 110 (301)
T ss_dssp HHHHHHHHHHHHHHHCT--HHH----H-HTTT-TTH-HHHHHHHHHHH-HBB--TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHH----H-hccc-ccc-cHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456778888899988777665 2 2222 132 6544 444444 444 455555666666666666665554433
No 99
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=26.07 E-value=6.5e+02 Score=25.97 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhcccchhhhcc
Q 022453 154 VVPIAAGLLLNRFFPRICNAIRP 176 (297)
Q Consensus 154 llPl~lG~~lr~~~~~~~~~~~~ 176 (297)
++|.++...+-.+..|+.+|+.|
T Consensus 219 ViPiil~v~~~s~iEk~l~K~iP 241 (627)
T PRK09824 219 VIPIIFSAWLCSILERRLNAWLP 241 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776666655444
No 100
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=24.23 E-value=1.8e+02 Score=23.87 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHH
Q 022453 31 VNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIML 86 (297)
Q Consensus 31 l~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l 86 (297)
=+++.+|+.+.+++|+.... +.+-....=+-+- |..+++.||+.-.|+++
T Consensus 64 Gki~~~~l~~~f~s~~g~~A-i~~Gilva~l~g~-----Gv~Ll~~~P~v~~gLvi 113 (140)
T PF04284_consen 64 GKIGFKDLLNSFKSWKGIIA-ILAGILVAWLGGR-----GVNLLKVQPQVIVGLVI 113 (140)
T ss_pred CCcCHHHHHHHHhCHHHHHH-HHHHHHHHHHhcc-----ChHHHccCChhhHHHHH
Confidence 36889999999999986543 2222222112222 33566778888777654
No 101
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=23.27 E-value=3.1e+02 Score=25.69 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHhcccc
Q 022453 150 LQIVVVPIAAGLLLNRFFPRI 170 (297)
Q Consensus 150 ~~~vllPl~lG~~lr~~~~~~ 170 (297)
...++.|++-.++-||..++.
T Consensus 299 vt~il~P~l~~~~~k~~~~~~ 319 (326)
T PRK05274 299 VTAILAPILTAWWSKRVGKRA 319 (326)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 346677887777766665443
Done!