Query 022453
Match_columns 297
No_of_seqs 172 out of 1312
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 1.5E-52 5.1E-57 389.8 26.6 285 2-297 30-315 (332)
2 3zux_A Transporter, ASBTNM; tr 30.1 2.9E+02 0.0099 24.4 12.8 24 153-176 20-43 (332)
3 2kv5_A FST, putative uncharact 26.8 45 0.0015 19.4 2.2 18 149-166 4-21 (33)
4 2ks1_B Epidermal growth factor 12.3 2.8E+02 0.0095 17.0 4.2 13 284-296 27-39 (44)
5 3k3f_A UREA transporter; membr 8.6 8.8E+02 0.03 21.5 7.2 23 215-237 53-75 (340)
6 1scf_A Stem cell factor; steel 7.7 86 0.0029 27.0 0.0 26 268-296 216-241 (273)
7 2l2t_A Receptor tyrosine-prote 7.7 3.7E+02 0.013 16.5 2.9 8 289-296 31-38 (44)
8 1tzs_X 23-MER peptide from PEL 5.6 2.9E+02 0.0098 14.9 1.4 15 78-92 6-20 (26)
9 1afo_A Glycophorin A; integral 5.5 5.7E+02 0.019 15.3 3.0 21 272-292 12-32 (40)
10 3rko_A NADH-quinone oxidoreduc 5.2 4.3E+02 0.015 20.6 2.9 37 212-255 22-58 (147)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=1.5e-52 Score=389.84 Aligned_cols=285 Identities=31% Similarity=0.554 Sum_probs=269.9
Q ss_pred eeeecCCccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHH
Q 022453 2 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIG 81 (297)
Q Consensus 2 ~~~~~P~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~ 81 (297)
+|+++|+.++++ ++++++.++++||.+|++++.+|+++.+||||.+..++++|++++|+++++++ +.++++|+++
T Consensus 30 lg~~~P~~~~~~-~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~----~~~~l~~~~~ 104 (332)
T 3zux_A 30 AAFFAPDTFKWA-GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLS----KLLNLPAEIA 104 (332)
T ss_dssp HHHHCGGGTGGG-GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH----HHTTCCHHHH
T ss_pred HHHHcchhhhhh-HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH----HHhCCChHHH
Confidence 578899999998 58999999999999999999999999999999999999999999999999998 7889999999
Q ss_pred HHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHH
Q 022453 82 AGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGL 161 (297)
Q Consensus 82 ~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~ 161 (297)
.|+++++||||+++|++||+++|||.+ +++.++.+||+++++++|+++.++.|+++++|+.+++.++...+++|+++|+
T Consensus 105 ~Glil~~~~P~~~~s~v~t~~a~Gd~~-la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~~~l~~~vllP~~lG~ 183 (332)
T 3zux_A 105 VGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGL 183 (332)
T ss_dssp HHHHHHHHSCCCTHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccch
Q 022453 162 LLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 241 (297)
Q Consensus 162 ~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~ 241 (297)
++|++.|++.+|.+|..+.++...++++++..++.+.+.+.+. ++.+....++++.++|.+||+++|.+|++++|
T Consensus 184 l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~---- 258 (332)
T 3zux_A 184 IVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDA---- 258 (332)
T ss_dssp HHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH----
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH----
Confidence 9999999999999999999999999999998888888877664 55677778899999999999999999999988
Q ss_pred hheeeeeecccchHHHHHHHHHhCC-CCcchhhHHHHHHHHHHHHHHHHHHHhhccC
Q 022453 242 QRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297 (297)
Q Consensus 242 ~~al~~~~g~rN~~la~~la~~~f~-~p~~~lp~~~~~~~q~i~~~~~a~~~~~~~~ 297 (297)
++|+++|+|+||+++|+++|..+|+ +|++++|.++|+++|++.+++++.+|+||++
T Consensus 259 ~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~ 315 (332)
T 3zux_A 259 QKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAG 315 (332)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999996 6899999999999999999999999998863
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=30.09 E-value=2.9e+02 Score=24.40 Aligned_cols=24 Identities=17% Similarity=-0.031 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhcccchhhhcc
Q 022453 153 VVVPIAAGLLLNRFFPRICNAIRP 176 (297)
Q Consensus 153 vllPl~lG~~lr~~~~~~~~~~~~ 176 (297)
..+-+.++..+-...|+..+..++
T Consensus 20 ~~l~i~~~~~lg~~~P~~~~~~~~ 43 (332)
T 3zux_A 20 FSLWAALFAAAAFFAPDTFKWAGP 43 (332)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGGG
T ss_pred HHHHHHHHHHHHHHcchhhhhhHH
Confidence 344455667777788887666554
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=26.81 E-value=45 Score=19.40 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHHHHHh
Q 022453 149 ILQIVVVPIAAGLLLNRF 166 (297)
Q Consensus 149 l~~~vllPl~lG~~lr~~ 166 (297)
++..++.|++.|+.++-.
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999999998854
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.34 E-value=2.8e+02 Score=17.05 Aligned_cols=13 Identities=0% Similarity=0.176 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhcc
Q 022453 284 MGFFLVMLWAKKS 296 (297)
Q Consensus 284 ~~~~~a~~~~~~~ 296 (297)
+......+||||+
T Consensus 27 i~~~~~~~~RRr~ 39 (44)
T 2ks1_B 27 VALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhH
Confidence 3333345666664
No 5
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=8.62 E-value=8.8e+02 Score=21.52 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhccCccc
Q 022453 215 TFHLSAFVAGYVVTGLAFAEAHD 237 (297)
Q Consensus 215 ~l~~~~~~~g~~l~~~~~l~~~~ 237 (297)
+..+.|-.++.+.++.++.|++|
T Consensus 53 ~~allG~~~stltA~llg~~~~~ 75 (340)
T 3k3f_A 53 VCAVLGTAASTLTAQLLGVDKPL 75 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHH
Confidence 34456777788888888766655
No 6
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=7.70 E-value=86 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022453 268 PLVSVPPAISTVIMSLMGFFLVMLWAKKS 296 (297)
Q Consensus 268 p~~~lp~~~~~~~q~i~~~~~a~~~~~~~ 296 (297)
+.+++|+...-++..++|++ +|++|+
T Consensus 216 ~~~~l~al~slvigf~~ga~---~wk~k~ 241 (273)
T 1scf_A 216 AAMALPALFSLIIGFAFGAL---YWKKRQ 241 (273)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH---hhcccC
Confidence 45667776666666666666 488776
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.68 E-value=3.7e+02 Score=16.51 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=4.5
Q ss_pred HHHHhhcc
Q 022453 289 VMLWAKKS 296 (297)
Q Consensus 289 a~~~~~~~ 296 (297)
..+||||+
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 34666654
No 8
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=5.62 E-value=2.9e+02 Score=14.90 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=10.5
Q ss_pred hhHHHHHHHHhccCc
Q 022453 78 TPIGAGIMLVSCVSG 92 (297)
Q Consensus 78 ~~~~~gl~l~~~~P~ 92 (297)
++++.|+++...-|.
T Consensus 6 ~piAaGLLLa~sqp~ 20 (26)
T 1tzs_X 6 PTAAAGLLLLAAQPA 20 (26)
T ss_pred hhHHHHHHHHhcChH
Confidence 567777777776664
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=5.52 E-value=5.7e+02 Score=15.30 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 022453 272 VPPAISTVIMSLMGFFLVMLW 292 (297)
Q Consensus 272 lp~~~~~~~q~i~~~~~a~~~ 292 (297)
+..++|.+..-++|.++-.-|
T Consensus 12 i~lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888765433
No 10
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=5.23 E-value=4.3e+02 Score=20.57 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeecccchH
Q 022453 212 LIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL 255 (297)
Q Consensus 212 ~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~~ 255 (297)
.+..+....+.+++++++.- + +. .+...+|||....+
T Consensus 22 ~~~~l~~~l~~l~~~l~~~~--~-~~----eK~spyECGfdp~~ 58 (147)
T 3rko_A 22 VAIGLCCLMLVGGWFLGGRA--R-AR----SKNVPFESGIDSVG 58 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--H-CC------------------
T ss_pred HHHHHHHHHHHHHHHHcCCC--C-Cc----ccCCCcccCCCCCC
Confidence 34555666667777776431 1 11 35778999987543
Done!