Query 022453
Match_columns 297
No_of_seqs 172 out of 1312
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 05:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022453.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022453hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 8.0 2.2E+02 0.016 16.9 3.9 49 118-166 9-59 (64)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 6.4 4.7E+02 0.034 21.3 6.6 26 207-232 72-97 (405)
3 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.5 4.7E+02 0.034 16.3 2.4 26 150-175 45-70 (75)
4 d2yvxa3 f.57.1.1 (A:276-448) M 2.3 1E+03 0.073 16.8 5.0 13 32-44 71-83 (173)
5 d3cx5h1 f.23.13.1 (H:2-94) Ubi 1.7 7.8E+02 0.057 15.8 2.6 26 150-175 55-80 (93)
6 d1v54l_ f.23.6.1 (L:) Mitochon 1.6 8.4E+02 0.061 13.5 3.9 23 207-229 18-40 (46)
7 d1jb0i_ f.23.17.1 (I:) Subunit 1.5 5.9E+02 0.043 13.4 1.4 11 56-66 12-22 (38)
8 d1ffta_ f.24.1.1 (A:) Cytochro 1.5 2E+03 0.15 17.7 8.5 80 84-164 235-315 (501)
9 d2bz2a1 d.58.7.1 (A:35-113) Ne 1.4 7.7E+02 0.056 14.2 2.0 15 30-44 12-26 (79)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 1.4 6.4E+02 0.047 15.1 1.5 16 29-44 16-31 (75)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.98 E-value=2.2e+02 Score=16.88 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHH-HcCCccc-cChHHHHHHHhHHHHHHHHHHHHHHHh
Q 022453 118 STATAVFVTPLLSLL-LIGKRLP-VDVKGMVSSILQIVVVPIAAGLLLNRF 166 (297)
Q Consensus 118 st~l~~~~~Pl~~~l-l~~~~~~-i~~~~i~~~l~~~vllPl~lG~~lr~~ 166 (297)
-|.++.+.+|..+.- +.|-+++ +|..+--......+.+++.++..+-.+
T Consensus 9 lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (64)
T d2iuba2 9 LTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVY 59 (64)
T ss_dssp HHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 466777777775442 2344432 333221112233444455555444433
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.37 E-value=4.7e+02 Score=21.27 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022453 207 LTILLLIITFHLSAFVAGYVVTGLAF 232 (297)
Q Consensus 207 ~~~~~~~~~l~~~~~~~g~~l~~~~~ 232 (297)
.+..........++..+|+..+..++
T Consensus 72 ~~ti~~~l~tt~iA~~igl~~~~~~~ 97 (405)
T d2nwwa1 72 VKIVVYYLLTSAFAVTLGIIMARLFN 97 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555666677777777664
No 3
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.53 E-value=4.7e+02 Score=16.26 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHhcccchhhhc
Q 022453 150 LQIVVVPIAAGLLLNRFFPRICNAIR 175 (297)
Q Consensus 150 ~~~vllPl~lG~~lr~~~~~~~~~~~ 175 (297)
.+.+..|.+++..+-.|-.+..++.+
T Consensus 45 ~l~v~PPfi~~Y~iy~W~~~~~~~~~ 70 (75)
T d1ppjg_ 45 ILRVAPPFVAFYLVYTWGTQEFEKSK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEcCHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999887655555443
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.32 E-value=1e+03 Score=16.77 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=8.2
Q ss_pred CCCHHHHHHHhcC
Q 022453 32 NSSEKDFIEAFKR 44 (297)
Q Consensus 32 ~l~~~~~~~~~~~ 44 (297)
+++.+|.++.++|
T Consensus 71 ~i~~~~~~~~l~k 83 (173)
T d2yvxa3 71 DLDLRDWRRVFLK 83 (173)
T ss_dssp CSCSSSHHHHHHH
T ss_pred cccchhHHHHHHH
Confidence 4566777666654
No 5
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.70 E-value=7.8e+02 Score=15.82 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHhcccchhhhc
Q 022453 150 LQIVVVPIAAGLLLNRFFPRICNAIR 175 (297)
Q Consensus 150 ~~~vllPl~lG~~lr~~~~~~~~~~~ 175 (297)
++.+..|.+++..+-.+-.+..+.++
T Consensus 55 ~lyv~PPfi~~Y~iy~Wa~~~ne~l~ 80 (93)
T d3cx5h1 55 FLYVLIPAGIYWYWWKNGNEYNEFLY 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEcchHHHHHHHHHHHHHHHHHHH
Confidence 46889999999888777555544443
No 6
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.55 E-value=8.4e+02 Score=13.46 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022453 207 LTILLLIITFHLSAFVAGYVVTG 229 (297)
Q Consensus 207 ~~~~~~~~~l~~~~~~~g~~l~~ 229 (297)
|.+...+.+++..+|+.-+++-|
T Consensus 18 ~rLla~m~~~fGsgfa~PF~ivR 40 (46)
T d1v54l_ 18 WRLLAMMTLFFGSGFAAPFFIVR 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchHHHHH
Confidence 55556667777777777776654
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=1.54 E-value=5.9e+02 Score=13.44 Aligned_cols=11 Identities=9% Similarity=0.718 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 022453 56 FVVKPILGYIF 66 (297)
Q Consensus 56 ~v~~Plla~~l 66 (297)
+++.|+.+|+.
T Consensus 12 wI~iPvv~wl~ 22 (38)
T d1jb0i_ 12 WIFIPVVCWLM 22 (38)
T ss_dssp HHHHHHHHTHH
T ss_pred hhHHHHHHHHH
Confidence 45556666554
No 8
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=1.47 E-value=2e+03 Score=17.71 Aligned_cols=80 Identities=9% Similarity=0.027 Sum_probs=45.9
Q ss_pred HHHHhccCch-hhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHH
Q 022453 84 IMLVSCVSGA-QLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLL 162 (297)
Q Consensus 84 l~l~~~~P~~-~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~ 162 (297)
.+-.-..|.- ..+-+....+|++.= ---.+....-....+..|++.+-+.....+.+........-..+.+|..+..+
T Consensus 235 ~VYi~ilPa~g~~~~iip~~~~~~lf-~~~~~~~a~~~i~~ls~~vw~HH~~~~g~~~~~~~~~~~~T~~iaiPs~~~~f 313 (501)
T d1ffta_ 235 EVYILILPVFGVFSEIAATFSRKRLF-GYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIF 313 (501)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTSCCS-SHHHHHHHHHHHHHTTSSCGGGGTTTTTCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred eeeeehhHHHHHHHHHHHHhcCCccc-cchHHHHHHHHHHHhccchhhhhhcccccChhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455667774 455677888888764 33333333444455555555554433334444555555556688899977655
Q ss_pred HH
Q 022453 163 LN 164 (297)
Q Consensus 163 lr 164 (297)
--
T Consensus 314 ~w 315 (501)
T d1ffta_ 314 NW 315 (501)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.38 E-value=7.7e+02 Score=14.21 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=8.4
Q ss_pred cCCCCHHHHHHHhcC
Q 022453 30 GVNSSEKDFIEAFKR 44 (297)
Q Consensus 30 gl~l~~~~~~~~~~~ 44 (297)
|+.++.+|+++.+.+
T Consensus 12 ~~~~te~~L~~~F~~ 26 (79)
T d2bz2a1 12 GEDMTPTLLRGAFSP 26 (79)
T ss_dssp CSSCCHHHHHHHHST
T ss_pred CCCCCHHHHHHHHhc
Confidence 455556666655544
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=1.35 E-value=6.4e+02 Score=15.05 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=10.8
Q ss_pred hcCCCCHHHHHHHhcC
Q 022453 29 VGVNSSEKDFIEAFKR 44 (297)
Q Consensus 29 ~gl~l~~~~~~~~~~~ 44 (297)
.|..++.+++.+.+++
T Consensus 16 lG~~i~~~~i~~~L~~ 31 (75)
T d1jjcb2 16 LGTSYPEAEQIAILKR 31 (75)
T ss_dssp HTCCCCHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHH
Confidence 4677777777766654
Done!