BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022459
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 129/298 (43%), Gaps = 22/298 (7%)
Query: 6 KDLFSGTVGGAAQLICGHPFDTIKVKLQ----SQPAPLPGQPPKYAGAMDAVKQTIAAEG 61
K L +GT A LI P DT KV+LQ SQ +Y G + + + EG
Sbjct: 4 KFLGAGTAACIADLIT-FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 62 PRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFL 121
PR LY G+ A L +F ++ + ++ ++ + +++ G+ G +
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY-TKGSEHAGIGSRLLAGSTTGALAVAV 121
Query: 122 ACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLVPTMARE 181
A PT+++K R QAQ A AG G+ +Y V+ K + R EG +RGL+KG P +AR
Sbjct: 122 AQPTDVVKVRFQAQ-ARAGGGR-----RYQSTVEAYKTIAREEG-IRGLWKGTSPNVARN 174
Query: 182 VPGNAAMFGVYELVKQYMAGGQDTSQXXXXXXXXXXXXXXXCFWFSVYPTDVVKSVIQVD 241
N A Y+L+K + + C P DVVK+
Sbjct: 175 AIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGF-CTTVIASPVDVVKT----- 228
Query: 242 DYKNP---KFSGSIDAFKKILKSEGVKGLYKGFTPAMARSVPANAACFLAYEVTRSSL 296
Y N ++ + +L+ EG + YKGF P+ R N F+ YE + +L
Sbjct: 229 RYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 4 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPR 63
I L +G+ GA + P D +KV+ Q+Q G+ +Y ++A K EG R
Sbjct: 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGR--RYQSTVEAYKTIAREEGIR 161
Query: 64 GLYKGMGAPLATVAAFN-ALLFTVRGQMEALLRSQPGAPLTVNQ---QIICGAGAGVAVS 119
GL+KG +A A N A L T + LL+ A L + GAG +
Sbjct: 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK----ANLMTDDLPCHFTSAFGAGFCTT 217
Query: 120 FLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLVPTMA 179
+A P +++K R SAL +Y A +LR EG R +KG +P+
Sbjct: 218 VIASPVDVVKTRYM-NSALG---------QYHSAGHCALTMLRKEGP-RAFYKGFMPSFL 266
Query: 180 REVPGNAAMFGVYELVKQ 197
R N MF YE +K+
Sbjct: 267 RLGSWNVVMFVTYEQLKR 284
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 113 GAGVAVSFLAC-PTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 171
G A+S A P E +K LQ Q A S Q+ +Y G +D R+ + +G L +
Sbjct: 15 GVAAAISKTAVAPIERVKLLLQVQHA---SKQISAEKQYKGIIDCVVRIPKEQGFL-SFW 70
Query: 172 KGLVPTMAREVPGNAAMFGVYELVKQYMAGGQDTSQXXXXXXXXXXXX------XXXCFW 225
+G + + R P A F + KQ GG D + CF
Sbjct: 71 RGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF- 129
Query: 226 FSVYPTDVVKSVIQVDDYK---NPKFSGSIDAFKKILKSEGVKGLYKGFTPAMARSVPAN 282
VYP D ++ + D K +F+G + KI KS+G++GLY+GF ++ +
Sbjct: 130 --VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 187
Query: 283 AACFLAYEVTRSSL 296
AA F Y+ + L
Sbjct: 188 AAYFGVYDTAKGML 201
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 21/275 (7%)
Query: 6 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPK-YAGAMDAVKQTIAAEGPRG 64
KD +G V A P + +K+ LQ Q A K Y G +D V + +G
Sbjct: 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 68
Query: 65 LYKGMGAPLATVAAFNALLFTVRGQMEALL------RSQPGAPLTVNQQIICGAGAGVAV 118
++G A + AL F + + + + Q N + G AG
Sbjct: 69 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGN--LASGGAAGATS 126
Query: 119 SFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLVPTM 178
P + + RL A G+ ++ G + ++ +S+G LRGL++G ++
Sbjct: 127 LCFVYPLDFARTRLAADV-----GKGAAQREFTGLGNCITKIFKSDG-LRGLYQGFNVSV 180
Query: 179 AREVPGNAAMFGVYELVKQYMAGGQDTSQXXXXXXXXXXXXXXXCFWFSVYPTDVVKSVI 238
+ AA FGVY+ K + D YP D V+ +
Sbjct: 181 QGIIIYRAAYFGVYDTAKGMLP---DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237
Query: 239 QVDDYK---NPKFSGSIDAFKKILKSEGVKGLYKG 270
+ + + ++G++D ++KI K EG K +KG
Sbjct: 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,265,100
Number of Sequences: 62578
Number of extensions: 324007
Number of successful extensions: 691
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 10
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)