Query 022459
Match_columns 297
No_of_seqs 148 out of 1564
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 05:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 4.5E-58 1.6E-62 389.1 21.3 281 6-297 3-287 (303)
2 1okc_A ADP, ATP carrier protei 100.0 7.7E-57 2.6E-61 380.8 23.0 283 4-296 7-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2.5E-36 8.6E-41 255.1 16.1 191 102-296 5-201 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.8E-36 6.2E-41 256.5 13.5 184 4-200 104-287 (303)
5 3vjj_A P9-1; 3.00A {Rice black 32.2 25 0.00086 28.1 2.3 36 222-264 273-308 (368)
6 3f2e_A SIRV coat protein; four 26.6 34 0.0012 21.3 1.8 35 246-280 6-44 (100)
7 2bnk_A Early protein GP16.7; D 24.9 42 0.0015 19.6 1.8 47 225-271 19-65 (67)
8 4b19_A PEPA1; toxin, toxin apo 17.2 23 0.0008 17.7 -0.3 22 212-233 5-26 (30)
9 3tgu_G UQCRQ, mitochondrial ub 13.5 56 0.0019 20.8 0.7 31 265-295 35-65 (81)
10 2acm_A Mucin-1; auto-catalytic 12.6 51 0.0017 19.4 0.2 21 150-171 39-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.5e-58 Score=389.13 Aligned_cols=281 Identities=25% Similarity=0.407 Sum_probs=251.1
Q ss_pred HHHHhhhhHhHhHhHhcCchhHHHHHHhcCCCCCC----CCCCCCCCHHHHHHHHHHhcCcchhccCcchhHHHHHHHHh
Q 022459 6 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLP----GQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNA 81 (297)
Q Consensus 6 ~~~~~g~~a~~~~~~i~~Pl~~ik~~~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~~l~~G~~~~~~~~~~~~~ 81 (297)
.++++|++|++++.+++||+|++|+|+|++..... .....+++.++++++|+++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999874321 11346889999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhcCCCCCCChHHHHHHhhHHHHHHhhhccchHHHHHHHHhhhcccCCCccccccccCChHHHHHHHH
Q 022459 82 LLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVL 161 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 161 (297)
++|.+||.+++.+.+... ..+....+++|++|++++.++++|+|+||+|+|++..... ...|++.++++++++
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~------~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG------GRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCC------SSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCC------CCCCCCHHHHHHHHH
Confidence 999999999999875522 4677889999999999999999999999999999864211 157899999999999
Q ss_pred hhccCccccccchhhhhhccccccchhHHHHHHHHHHHhCCCCCCCcchhHHHHHhhHHHHHHHhhccchHHHHHHHhcC
Q 022459 162 RSEGGLRGLFKGLVPTMAREVPGNAAMFGVYELVKQYMAGGQDTSQLGRGAVLLAGGLSGACFWFSVYPTDVVKSVIQVD 241 (297)
Q Consensus 162 ~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~Pld~i~~r~q~~ 241 (297)
+ +||++|||||+.|++++.+|+.+++|.+||.+|+.+.+... ...+....+++|++||+++.++++|+|+||+|+|.+
T Consensus 156 ~-~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~ 233 (303)
T 2lck_A 156 R-EEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNS 233 (303)
T ss_dssp H-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred H-hcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 9 99999999999999999999999999999999998875432 234567789999999999999999999999999997
Q ss_pred CCCCCCCCChHHHHHHHHHhhCccccccchhhhhhhhhcchhhHHHHHHHHHhhhC
Q 022459 242 DYKNPKFSGSIDAFKKILKSEGVKGLYKGFTPAMARSVPANAACFLAYEVTRSSLG 297 (297)
Q Consensus 242 ~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~ 297 (297)
. ...|+++++|+++++++||+++||||+.++++|.+|.++++|.+||.+|+.++
T Consensus 234 ~--~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 234 A--LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp C--SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred c--ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4 35699999999999999999999999999999999999999999999998763
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.7e-57 Score=380.82 Aligned_cols=283 Identities=21% Similarity=0.350 Sum_probs=241.7
Q ss_pred hhHHHHhhhhHhHhHhHhcCchhHHHHHHhcCCCCCC-CCCCCCCCHHHHHHHHHHhcCcchhccCcchhHHHHHHHHhH
Q 022459 4 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLP-GQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAL 82 (297)
Q Consensus 4 ~~~~~~~g~~a~~~~~~i~~Pl~~ik~~~q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~~l~~G~~~~~~~~~~~~~~ 82 (297)
.++.+++|++|++++.++++|+|++|+|+|++..... .....+++.++++++++++||+++||||+.+++++.++..++
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 86 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999864211 123468899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhcCCCCCC----ChHHHHHHhhHHHHHHhhhccchHHHHHHHHhhhcccCCCccccccccCChHHHHH
Q 022459 83 LFTVRGQMEALLRSQPGAPL----TVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAK 158 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~a~~~~~~v~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (297)
+|.+||.+++.+.+...... +....+++|++|++++.++++|+|+||+|+|++..... ....|++.+++++
T Consensus 87 ~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~-----~~~~~~~~~~~~~ 161 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA-----AQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST-----TTCSCSSHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC-----cCcCCCCHHHHHH
Confidence 99999999996433222122 23567899999999999999999999999999854221 1257899999999
Q ss_pred HHHhhccCccccccchhhhhhccccccchhHHHHHHHHHHHhCCCCCCCcchhHHHHHhhHHHHHHHhhccchHHHHHHH
Q 022459 159 RVLRSEGGLRGLFKGLVPTMAREVPGNAAMFGVYELVKQYMAGGQDTSQLGRGAVLLAGGLSGACFWFSVYPTDVVKSVI 238 (297)
Q Consensus 159 ~i~~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~Pld~i~~r~ 238 (297)
++++ +||++|||||+.|++++.+|+.+++|.+||.+|+.+.+. +..+....+++|++||+++.++++|+|+||+|+
T Consensus 162 ~i~~-~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~ 237 (297)
T 1okc_A 162 KIFK-SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237 (297)
T ss_dssp HHHH-HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999 999999999999999999999999999999999976532 234567788999999999999999999999999
Q ss_pred hcCCCC---CCCCCChHHHHHHHHHhhCccccccchhhhhhhhhcchhhHHHHHHHHHhhh
Q 022459 239 QVDDYK---NPKFSGSIDAFKKILKSEGVKGLYKGFTPAMARSVPANAACFLAYEVTRSSL 296 (297)
Q Consensus 239 q~~~~~---~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~ 296 (297)
|.+... ...|+++++|+++++++||+++||||+.++++|. +.++++|.+||.+|+.+
T Consensus 238 q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 987542 2469999999999999999999999999999996 46899999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.5e-36 Score=255.08 Aligned_cols=191 Identities=29% Similarity=0.436 Sum_probs=164.9
Q ss_pred CChHHHHHHhhHHHHHHhhhccchHHHHHHHHhhhcccCCCccccccccCChHHHHHHHHhhccCccccccchhhhhhcc
Q 022459 102 LTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLVPTMARE 181 (297)
Q Consensus 102 ~~~~~~~~~g~~a~~~~~~v~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~~gly~G~~~~l~~~ 181 (297)
.+....+++|++|++++.++++|+|++|+|+|++...... .....|++.+++++++++ +||++|||||+.|++++.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~---~~~~~~~~~~~~~~~i~~-~eG~~glyrG~~~~l~~~ 80 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI---SAEKQYKGIIDCVVRIPK-EQGFLSFWRGNLANVIRY 80 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC---CGGGSCCSHHHHHHHHHH-HHCGGGGGTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc---ccccccccHHHHHHHHHh-ccchhheecccHHHHHHH
Confidence 3456789999999999999999999999999998642111 112578999999999999 999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhCCCC-CCC--cchhHHHHHhhHHHHHHHhhccchHHHHHHHhcCCCC---CCCCCChHHHH
Q 022459 182 VPGNAAMFGVYELVKQYMAGGQD-TSQ--LGRGAVLLAGGLSGACFWFSVYPTDVVKSVIQVDDYK---NPKFSGSIDAF 255 (297)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~a~~~~~~~t~Pld~i~~r~q~~~~~---~~~~~~~~~~~ 255 (297)
+|..+++|.+||.+|+.+.+..+ ... ......+++|++||+++.++++|+|+||+|+|.+... ...|++.++++
T Consensus 81 ~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999999996543222 111 1345678999999999999999999999999998532 35689999999
Q ss_pred HHHHHhhCccccccchhhhhhhhhcchhhHHHHHHHHHhhh
Q 022459 256 KKILKSEGVKGLYKGFTPAMARSVPANAACFLAYEVTRSSL 296 (297)
Q Consensus 256 ~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~ 296 (297)
++++++||+++||||+.+++++.+|..++.|.+||.+|+.+
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999865
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.8e-36 Score=256.54 Aligned_cols=184 Identities=27% Similarity=0.422 Sum_probs=167.4
Q ss_pred hhHHHHhhhhHhHhHhHhcCchhHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHhcCcchhccCcchhHHHHHHHHhHH
Q 022459 4 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALL 83 (297)
Q Consensus 4 ~~~~~~~g~~a~~~~~~i~~Pl~~ik~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~l~~G~~~~~~~~~~~~~~~ 83 (297)
....+++|++|++++.++++|+|++|+|+|++... .....+++.++++++|+++||+++||||+.+++++.++..+++
T Consensus 104 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 45679999999999999999999999999998642 1234688999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhcCCCCCCChHHHHHHhhHHHHHHhhhccchHHHHHHHHhhhcccCCCccccccccCChHHHHHHHHhh
Q 022459 84 FTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRS 163 (297)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 163 (297)
|.+||.+++.+.+......+....+++|++|+++++++++|+|+||+|+|.+.. ..|++++++++++++
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----------~~y~~~~~~~~~i~~- 250 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----------GQYHSAGHCALTMLR- 250 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----------SSCCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----------cccCCHHHHHHHHHH-
Confidence 999999999887655445677789999999999999999999999999999764 468999999999999
Q ss_pred ccCccccccchhhhhhccccccchhHHHHHHHHHHHh
Q 022459 164 EGGLRGLFKGLVPTMAREVPGNAAMFGVYELVKQYMA 200 (297)
Q Consensus 164 ~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~ 200 (297)
+||++|||||+.|+++|.+|..+++|.+||.+|+.+.
T Consensus 251 ~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 251 KEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp SSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997654
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=32.24 E-value=25 Score=28.09 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHHhhccchHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhCc
Q 022459 222 ACFWFSVYPTDVVKSVIQVDDYKNPKFSGSIDAFKKILKSEGV 264 (297)
Q Consensus 222 ~~~~~~t~Pld~i~~r~q~~~~~~~~~~~~~~~~~~i~~~~G~ 264 (297)
.++++=-||||.+|-.++.. -++...+++.++++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sl-------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL-------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC-------CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh-------ccChHHHHHHHHhcCc
Confidence 34556679999998877754 3456789999999984
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=26.60 E-value=34 Score=21.33 Aligned_cols=35 Identities=29% Similarity=0.672 Sum_probs=24.3
Q ss_pred CCCCChHHHHHHHHHhhCc----cccccchhhhhhhhhc
Q 022459 246 PKFSGSIDAFKKILKSEGV----KGLYKGFTPAMARSVP 280 (297)
Q Consensus 246 ~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~~~~ 280 (297)
+++.++-.-...++.+-|+ +.+|+|+..+..|..-
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaraln 44 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALN 44 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHH
Confidence 4555666667777888886 4599999988776653
No 7
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=24.91 E-value=42 Score=19.59 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred HhhccchHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhCccccccch
Q 022459 225 WFSVYPTDVVKSVIQVDDYKNPKFSGSIDAFKKILKSEGVKGLYKGF 271 (297)
Q Consensus 225 ~~~t~Pld~i~~r~q~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~ 271 (297)
+-+--|.|.|..-..-.-.....-.++...=|..|+-|.-+-+|||.
T Consensus 19 SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 19 SNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp TTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred cCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 34568999998766321111222234555567888999999999995
No 8
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=17.23 E-value=23 Score=17.66 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=15.9
Q ss_pred HHHHHhhHHHHHHHhhccchHH
Q 022459 212 AVLLAGGLSGACFWFSVYPTDV 233 (297)
Q Consensus 212 ~~~~~~~~a~~~~~~~t~Pld~ 233 (297)
.++++..++|.+.++.+|-|+.
T Consensus 5 v~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 5 VHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp TSSTTTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3455677888888888887753
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=13.51 E-value=56 Score=20.79 Aligned_cols=31 Identities=13% Similarity=0.369 Sum_probs=22.9
Q ss_pred cccccchhhhhhhhhcchhhHHHHHHHHHhh
Q 022459 265 KGLYKGFTPAMARSVPANAACFLAYEVTRSS 295 (297)
Q Consensus 265 ~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~ 295 (297)
-..+|-+...++.++|..++...+|+..++.
T Consensus 35 ~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ 65 (81)
T 3tgu_G 35 PNVWRRFSSQVFKVAPPFLGAYLLYSWGTQE 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHH
Confidence 3344445566788999999999999987654
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=12.55 E-value=51 Score=19.43 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=16.8
Q ss_pred cCChHHHHHHHHhhccCccccc
Q 022459 150 YGGPVDVAKRVLRSEGGLRGLF 171 (297)
Q Consensus 150 ~~~~~~~~~~i~~~~~G~~gly 171 (297)
.+++.+.+.+|++ ++++.|++
T Consensus 39 qr~is~L~lqIyk-q~~FLgl~ 59 (66)
T 2acm_A 39 QRDISEMFLQIYK-QGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHHCT-TTTEEEEE
T ss_pred HHHHHHHHHHHHc-cCCeeeee
Confidence 3567788888999 88988876
Done!