BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022460
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 1/125 (0%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 202
I +V+DLDETLVHSSF +ADF P+ V V+V +RP++ FL+ + +F+ V+
Sbjct: 15 ICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVL 74
Query: 203 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262
FTA + YA + D+LD R++R+SCVF G Y+KDL+ LGRDL R+ I+DN+P
Sbjct: 75 FTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSP 133
Query: 263 QVYLF 267
Y+F
Sbjct: 134 ASYVF 138
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Query: 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFT 204
+V+DLDETLVHSSF +ADF P+ + V+V +RP++ FL+ + +F+ V+FT
Sbjct: 31 VVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFT 90
Query: 205 AGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQV 264
A + YA + D+LD + R++R+SCVF G Y+KDL+ LGR+L+++ IVDN+P
Sbjct: 91 ASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPAS 149
Query: 265 YLF 267
Y+F
Sbjct: 150 YIF 152
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 87/147 (59%), Gaps = 7/147 (4%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 202
I +V+DLDETLVHSSF +ADF P+ V V+V +RP++ FL+ +F+ V+
Sbjct: 16 ICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRXGELFECVL 75
Query: 203 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262
FTA + YA + D LD R++R+SCVF G Y+KDL+ LGRDL R+ I DN+P
Sbjct: 76 FTASLAKYADPVADXLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLIXDNSP 134
Query: 263 QVYLFLSYINYPPDILIIYLSFYINAS 289
Y+F PD + S++ N S
Sbjct: 135 ASYVF------HPDNAVPVASWFDNXS 155
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 1/125 (0%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 202
I +V+DLDETLVHSSF +ADF PI + V+V +RPY+ FL + +F+ V+
Sbjct: 18 ICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVL 77
Query: 203 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262
FTA + YA + D+LD + R++R+SCVF G Y+KDL+ LGRDL + I+DN+P
Sbjct: 78 FTASLAKYADPVTDLLD-RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSP 136
Query: 263 QVYLF 267
Y+F
Sbjct: 137 ASYIF 141
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 7/147 (4%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 202
I +V++LDETLVHSSF +ADF P+ V V+V +RP++ FL+ + +F+ V+
Sbjct: 16 ICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVL 75
Query: 203 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262
FTA + YA + D+LD R++R+SCVF G Y+KDL+ LGRDL R+ I+DN+P
Sbjct: 76 FTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSP 134
Query: 263 QVYLFLSYINYPPDILIIYLSFYINAS 289
Y+F PD + S++ N S
Sbjct: 135 ASYVF------HPDNAVPVASWFDNMS 155
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 1/125 (0%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 202
I +V+ LDETLVHSSF +ADF P+ V V+V +RP++ FL+ + +F+ V+
Sbjct: 16 ICVVIXLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVL 75
Query: 203 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262
FTA + YA + D+LD R++R+SCVF G Y+KDL+ LGRDL R+ I+DN+P
Sbjct: 76 FTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSP 134
Query: 263 QVYLF 267
Y+F
Sbjct: 135 ASYVF 139
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 7/147 (4%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 202
I +V+DL ETLVHSSF +ADF P+ V V+V +RP++ FL+ + +F+ V+
Sbjct: 19 ICVVIDLAETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVL 78
Query: 203 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262
FTA + YA + D+LD R++R+SCVF G Y+KDL+ LGRDL R+ I+DN+P
Sbjct: 79 FTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSP 137
Query: 263 QVYLFLSYINYPPDILIIYLSFYINAS 289
Y+F PD + S++ N S
Sbjct: 138 ASYVF------HPDNAVPVASWFDNMS 158
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 7/147 (4%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 202
I +V+DLDETLVHSSF +ADF P+ V V+V +RP++ FL+ + +F+ V+
Sbjct: 19 ICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVL 78
Query: 203 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262
FTA + YA + D+LD R++R+SCVF G Y+KDL+ LGRDL R+ I+ N+P
Sbjct: 79 FTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILANSP 137
Query: 263 QVYLFLSYINYPPDILIIYLSFYINAS 289
Y+F PD + S++ N S
Sbjct: 138 ASYVF------HPDNAVPVASWFDNMS 158
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 7/147 (4%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVI 202
I +V+ LDETLVHSSF +ADF P+ V V+V +RP++ FL+ + +F+ V+
Sbjct: 19 ICVVIXLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVL 78
Query: 203 FTAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTP 262
FTA + YA + D+LD R++R+SCVF G Y+KDL+ LGRDL R+ I+ N+P
Sbjct: 79 FTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILANSP 137
Query: 263 QVYLFLSYINYPPDILIIYLSFYINAS 289
Y+F PD + S++ N S
Sbjct: 138 ASYVF------HPDNAVPVASWFDNMS 158
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 15/122 (12%)
Query: 144 TLVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIF 203
TLV+ L++ LVHS + K +T +RP FL ++ +++V+F
Sbjct: 36 TLVITLEDFLVHSEWSQ------------KHGWRTA---KRPGADYFLGYLSQYYEIVLF 80
Query: 204 TAGQSIYAGQLLDILDPNQTLIGQRVYRDSCVFADGEYLKDLTILGRDLARIAIVDNTPQ 263
++ +Y+ ++ + LDP + ++++ CV+ DG ++KDL+ L RDL+++ I+D P
Sbjct: 81 SSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPN 140
Query: 264 VY 265
Y
Sbjct: 141 SY 142
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEV-----------------QTVFVRQRP 185
++L++DLD+T++H++ D S P + +V +++ RP
Sbjct: 19 LSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRP 78
Query: 186 YLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRV 229
L FL+ ++ ++++ I+T G YA ++ I+DP L RV
Sbjct: 79 GLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRV 122
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 143 ITLVLDLDETLVHSSFDNCKDADFSFPIHSKMEV-----------------QTVFVRQRP 185
++L++ LD+T++H++ D S P + +V +++ RP
Sbjct: 27 LSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRP 86
Query: 186 YLHMFLEAVASMFDVVIFTAGQSIYAGQLLDILDPNQTLIGQRV 229
L FL+ ++ ++++ I+T G YA ++ I+DP L RV
Sbjct: 87 GLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRV 130
>pdb|3SHQ|A Chain A, Crystal Structure Of Ublcp1
Length = 320
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 145 LVLDLDETLVHSSFDNCKDADFSFPIHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFT 204
LVLD+D TL D P + E+ RPYLH FL + +D+VI++
Sbjct: 143 LVLDIDYTLF----------DHRSPAETGTELM------RPYLHEFLTSAYEDYDIVIWS 186
Query: 205 AGQSIYAGQLLDIL 218
A + + + +L
Sbjct: 187 ATSMRWIEEKMRLL 200
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 102 GXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 155
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A+G YL+D ++ RDLA ++ TPQ
Sbjct: 98 GCLLDYVREHKDNIGSQYLLNWCVQIAEGMNYLEDRRLVHRDLAARNVLVKTPQ 151
>pdb|1PRT|D Chain D, The Crystal Structure Of Pertussis Toxin
pdb|1PRT|E Chain E, The Crystal Structure Of Pertussis Toxin
pdb|1PRT|J Chain J, The Crystal Structure Of Pertussis Toxin
pdb|1PRT|K Chain K, The Crystal Structure Of Pertussis Toxin
pdb|1PTO|D Chain D, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
pdb|1PTO|E Chain E, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
pdb|1PTO|J Chain J, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
pdb|1PTO|K Chain K, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
pdb|1BCP|D Chain D, Binary Complex Of Pertussis Toxin And Atp
pdb|1BCP|E Chain E, Binary Complex Of Pertussis Toxin And Atp
pdb|1BCP|J Chain J, Binary Complex Of Pertussis Toxin And Atp
pdb|1BCP|K Chain K, Binary Complex Of Pertussis Toxin And Atp
Length = 110
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 111 PYLYFMGWQNLPQIAPSYWPRTPLREPIAGLPITLVLDLDETLVHSSFDNCKDADFSFPI 170
PY+ + +A + TP R + G+ L H F C D P
Sbjct: 3 PYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPF--CFGKDLKRPG 60
Query: 171 HSKMEV--QTVFVRQRPYLHMFL 191
S MEV + VF++QRP L MFL
Sbjct: 61 SSPMEVMLRAVFMQQRP-LRMFL 82
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 118 WQNLPQIAPSYWPRTPLREPIAGLPITLVLDLDE------TLVHSSFDNCKDADFSFP-- 169
W+ ++ +WPR I L IT +D +E L ++ K+ F F
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322
Query: 170 ----IHSKMEVQTVFVRQRPYLHMFLEAVASMFDVVIFTAG---QSIYAGQLLDILDPNQ 222
+ ++M ++ + + P++HM S F + FT S++ G L Q
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG--CSTLKRLQ 380
Query: 223 TLIGQR 228
TLI QR
Sbjct: 381 TLILQR 386
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 107 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 160
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 95 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 148
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 105 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 158
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 102 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 155
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 111 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 164
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 104 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 157
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 105 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 158
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 108 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 161
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 104 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 157
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 104 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 157
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 154
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 103 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 156
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 126 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 179
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 104 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 157
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 108 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 161
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 108 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 161
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 108 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 161
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 212 GQLLDILDPNQTLIGQRVYRDSCV-FADG-EYLKDLTILGRDLARIAIVDNTPQ 263
G LLD + ++ IG + + CV A G YL+D ++ RDLA ++ TPQ
Sbjct: 135 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ 188
>pdb|1SFR|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Antigen 85a Protein
pdb|1SFR|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Antigen 85a Protein
pdb|1SFR|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Antigen 85a Protein
Length = 304
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 193 AVASMFDVVIFTAGQSIYAGQLLDILDPNQ----TLIG 226
A +S + I+ Q +YAG + +LDP+Q TLIG
Sbjct: 129 AASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIG 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,331,480
Number of Sequences: 62578
Number of extensions: 405634
Number of successful extensions: 716
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 45
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)