BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022463
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 178/260 (68%), Positives = 215/260 (82%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYSEGYPG RYYGG E +D E LCQ+RALEAF LDP +WGVNVQ SGS
Sbjct: 71 LEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 130
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+N VYTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN TG I
Sbjct: 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 190
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DY+QL +A LFRP+LI+AG SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VI
Sbjct: 191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI 250
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPF++AD+VTTTTHK+LRG R +IF+RKGVK ++ K G+E+ Y +E++IN AVFP LQ
Sbjct: 251 PSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I +AVALKQ CT
Sbjct: 311 GGPHNHAIAAVAVALKQACT 330
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/261 (67%), Positives = 214/261 (81%), Gaps = 1/261 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYSEGYPG RYYGG E+ID E+LCQKRAL+A++LDP+ WGVNVQ SGS
Sbjct: 52 LEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGS 111
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N TGYI
Sbjct: 112 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYI 171
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
+YDQLE++A LF PKLI+AG S Y+R +Y R+RK+ ++ A ++ADMAHISGLVAAGV+
Sbjct: 172 NYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVV 231
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPFE+ VVTTTTHK+LRG R MIF+RKGVK ++ GKE+ Y+ E IN AVFPGLQ
Sbjct: 232 PSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPATGKEILYNLESLINSAVFPGLQ 291
Query: 240 GGPHNHTITGLAVALKQVCTL 260
GGPHNH I G+AVALKQ TL
Sbjct: 292 GGPHNHAIAGVAVALKQAMTL 312
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 357 bits (915), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 172/260 (66%), Positives = 211/260 (81%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYSEGYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGS
Sbjct: 61 LEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 120
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYI
Sbjct: 121 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI 180
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+
Sbjct: 181 DYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV 240
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQ
Sbjct: 241 PSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQ 300
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I G+AVALKQ T
Sbjct: 301 GGPHNHAIAGVAVALKQAMT 320
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 356 bits (913), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 172/260 (66%), Positives = 211/260 (81%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYSEGYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGS
Sbjct: 48 LEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 107
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYI
Sbjct: 108 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI 167
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+
Sbjct: 168 DYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV 227
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQ
Sbjct: 228 PSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQ 287
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I G+AVALKQ T
Sbjct: 288 GGPHNHAIAGVAVALKQAMT 307
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 171/260 (65%), Positives = 211/260 (81%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYS+GYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGS
Sbjct: 61 LEALGSCLNNKYSQGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 120
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYI
Sbjct: 121 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI 180
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+
Sbjct: 181 DYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV 240
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQ
Sbjct: 241 PSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQ 300
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I G+AVALKQ T
Sbjct: 301 GGPHNHAIAGVAVALKQAMT 320
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 353 bits (906), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/260 (65%), Positives = 210/260 (80%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYS GYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGS
Sbjct: 61 LEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 120
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYI
Sbjct: 121 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI 180
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+
Sbjct: 181 DYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV 240
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQ
Sbjct: 241 PSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQ 300
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I G+AVALKQ T
Sbjct: 301 GGPHNHAIAGVAVALKQAMT 320
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 348 bits (893), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/274 (62%), Positives = 211/274 (77%), Gaps = 5/274 (1%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYSEGYPG RYYGG E+ID E LCQKRAL+A+ LDP+ WGVNVQ SGS
Sbjct: 56 LEALGSSLNNKYSEGYPGQRYYGGTEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGS 115
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+NF VYTAL++PH RI LDLP GGHL+HG+ TD KKISA SIFFE+ PY++ TGYI
Sbjct: 116 PANFAVYTALVEPHGRIXGLDLPDGGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYI 175
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
+YDQLE++A+LF PKLI+AG S Y+R DY R+RK+ + A + AD AHISGLVAAGV+
Sbjct: 176 NYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVV 235
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPFE+ VVTTTTHK+LRG R IF+RKGV+ ++ K GKE +Y+ E IN AVFPGLQ
Sbjct: 236 PSPFEHCHVVTTTTHKTLRGCRAGXIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQ 295
Query: 240 GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHV 273
GGPHNH I G+AVALKQ T + ++ L V
Sbjct: 296 GGPHNHAIAGVAVALKQAXT----TEFKIYQLQV 325
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 164/256 (64%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG E++D+ ES+ RA F + VNVQ SG
Sbjct: 43 MEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAEH----VNVQPHSGP 98
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY L+ D ++ ++L HGGHL+HG ++ F+ + Y +++ T I
Sbjct: 99 QANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERI 153
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
+YD++ K A +PKLIVAGASAY+R D+++ +++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 154 NYDEVRKLALEHKPKLIVAGASAYSRTIDFKKFKEIADEVNAKLMVDMAHIAGLVAAGLH 213
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P EYAD VTTTTHK+LRGPRG MI ++ +Y++ I++ +FPG+QG
Sbjct: 214 PNPVEYADFVTTTTHKTLRGPRGGMILCKE--------------EYKKDIDKTIFPGIQG 259
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 260 GPLEHVIAAKAVAFGE 275
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 162/256 (63%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 162/256 (63%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 162/256 (63%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE----HANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 162/256 (63%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA A+AY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/256 (48%), Positives = 166/256 (64%), Gaps = 21/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
MQA GS +TNKY+EGYPG RYYGG EY+D+ E L RA E F D NVQ SGS
Sbjct: 44 MQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGS 99
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+NF VYTALL+P D ++ ++L HGGHL+HG ++ + +PY ++ +TG+I
Sbjct: 100 QANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGID-ATGHI 153
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DY LEK A +PK+I+ G SAY+ + D+ ++R++ + A + DMAH++GLVAAGV
Sbjct: 154 DYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVY 213
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P +A VVTTTTHK+L GPRG +I + G +E+ K K+N AVFPG QG
Sbjct: 214 PNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQG 262
Query: 241 GPHNHTITGLAVALKQ 256
GP H I G AVALK+
Sbjct: 263 GPLMHVIAGKAVALKE 278
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 159/253 (62%), Gaps = 22/253 (8%)
Query: 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 61
+AVGSV+TNKY+EGYPGARYYGG E ID ESL +RA F W NVQ SGS
Sbjct: 41 EAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFG---AAWA-NVQPHSGSQ 96
Query: 62 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 121
+N VY AL++P D +M +DL GGHL+HG +++ ++ + Y + T ID
Sbjct: 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHG-----SRVNFSGKLYKVVSYGVRPDTELID 151
Query: 122 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181
+++ + A RPK+IVAGASAY R +D++ R++ ++ A ++ DMAH +GLVAAG+ P
Sbjct: 152 LEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHP 211
Query: 182 SPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241
+P YA VVT+TTHK+LRGPRG +I E+ K +I++ +FPG+QGG
Sbjct: 212 NPLPYAHVVTSTTHKTLRGPRGGLILSND--PELGK-----------RIDKLIFPGIQGG 258
Query: 242 PHNHTITGLAVAL 254
P H I G AVA
Sbjct: 259 PLEHVIAGKAVAF 271
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 162/256 (63%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY++GYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAQGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 162/256 (63%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNK++EGYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKFAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 162/256 (63%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTH++LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHQTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 166/256 (64%), Gaps = 21/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
MQA GS +TNKY+EGYPG RY+GG EY+D+ E L RA E F D NVQ SGS
Sbjct: 44 MQAQGSQLTNKYAEGYPGKRYFGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGS 99
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+NF VYTALL+P D ++ ++L HGGHL+HG ++ + +PY + ++TG+I
Sbjct: 100 QANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHI 153
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DY LEK A +PK+I+ G SAY+ + D+ ++R++ + A + DMAH++GLVAAGV
Sbjct: 154 DYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVY 213
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P +A VVTTTTHK+L GPRG +I + G +E+ K K+N AVFPG QG
Sbjct: 214 PNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQG 262
Query: 241 GPHNHTITGLAVALKQ 256
GP H I G AVALK+
Sbjct: 263 GPLMHVIAGKAVALKE 278
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 166/256 (64%), Gaps = 21/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
MQA GS +TNK++EGYPG RYYGG EY+D+ E L RA E F D NVQ SGS
Sbjct: 44 MQAQGSQLTNKFAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGS 99
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+NF VYTALL+P D ++ ++L HGGHL+HG ++ + +PY + ++TG+I
Sbjct: 100 QANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHI 153
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DY LEK A +PK+I+ G SAY+ + D+ ++R++ + A + DMAH++GLVAAGV
Sbjct: 154 DYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVY 213
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P +A VVTTTTHK+L GPRG +I + G +E+ K K+N AVFPG QG
Sbjct: 214 PNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK-----------KLNSAVFPGGQG 262
Query: 241 GPHNHTITGLAVALKQ 256
GP H I G AVALK+
Sbjct: 263 GPLMHVIAGKAVALKE 278
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 161/256 (62%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE----HANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTH +LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHMTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 161/256 (62%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RY GG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYAGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 161/256 (62%), Gaps = 23/256 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG R YGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRAYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQ 256
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGE 272
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 161/254 (63%), Gaps = 23/254 (9%)
Query: 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 61
+ GS++TNKY+EGYPG RYYGG E++D E+L +R + F K+ NVQ SGS
Sbjct: 43 EVXGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC---KF-ANVQPNSGSQ 98
Query: 62 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 121
+N VY AL+ P D+I+ DL HGGHL+HG K+S+ +E+ Y + E G ID
Sbjct: 99 ANQGVYAALINPGDKILGXDLSHGGHLTHG-----AKVSSSGKXYESCFYGV-ELDGRID 152
Query: 122 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181
Y+++ + A +PKLIV GASAYAR+ D+ + R++ ++ A + AD+AHI+GLV AG P
Sbjct: 153 YEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHP 212
Query: 182 SPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241
SPF YA VV++TTHK+LRGPRG +I +E+ K KIN A+FPG+QGG
Sbjct: 213 SPFPYAHVVSSTTHKTLRGPRGGIIXTND--EELAK-----------KINSAIFPGIQGG 259
Query: 242 PHNHTITGLAVALK 255
P H I AV K
Sbjct: 260 PLXHVIAAKAVGFK 273
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 204 bits (519), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 150/259 (57%), Gaps = 22/259 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
+ A GSV+TNKY+EGYPG RYYGG E+ D E+L +R F NVQ SG+
Sbjct: 49 LDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF----NAGHANVQPHSGA 104
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N V AL KP D ++ + L GGHL+HG K + +F + Y ++ T I
Sbjct: 105 QANGAVMLALAKPGDTVLGMSLDAGGHLTHG-----AKPALSGKWFNALQYGVSRDTMLI 159
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYDQ+E A +P LI+AG SAY R D+ R R + + A ++ DMAHI+G++AAG
Sbjct: 160 DYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRH 219
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
+P E+A VVT+TTHK+LRGPRG + +EI K KIN AVFPGLQG
Sbjct: 220 ANPVEHAHVVTSTTHKTLRGPRGGFVLTND--EEIAK-----------KINSAVFPGLQG 266
Query: 241 GPHNHTITGLAVALKQVCT 259
GP H I G AVA + T
Sbjct: 267 GPLMHVIAGKAVAFGEALT 285
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 156/259 (60%), Gaps = 23/259 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
+QA GSV+TNKY+EG PG RYYGG E++D+ E+L + RA F + NVQ SG+
Sbjct: 62 LQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGA 117
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N V AL+ P +R++ LDL +GGHL+HG +++ +E Y ++ +T I
Sbjct: 118 QANAAVLHALMSPGERLLGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATHLI 172
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
D D + +A FRPK+I+AG SAY R+ D+ R + ++ A +L DMAH +GLVAAG+
Sbjct: 173 DMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLH 232
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
PSP +ADVV+TT H +L G R +I + KQ Y + IN AVFPG QG
Sbjct: 233 PSPVPHADVVSTTVHXTLGGGRSGLI--------VGKQ------QYAKAINSAVFPGQQG 278
Query: 241 GPHNHTITGLAVALKQVCT 259
GP H I G AVALK T
Sbjct: 279 GPLMHVIAGKAVALKIAAT 297
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 158/255 (61%), Gaps = 21/255 (8%)
Query: 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 61
QA GS +TNKY+EGYPG RYYGG EY+D+ E L RA E F D NVQ SGS
Sbjct: 48 QAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQ 103
Query: 62 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 121
+NF VYTALL+P D ++ +L GGHL+HG ++ + +PY ++ES G ID
Sbjct: 104 ANFAVYTALLQPGDTVLGXNLAQGGHLTHG-----SPVNFSGKLYNIVPYGIDES-GKID 157
Query: 122 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181
YD+ K A +PK I+ G SAY+ + D+ + R++ + A + D AH++GL+AAGV P
Sbjct: 158 YDEXAKLAKEHKPKXIIGGFSAYSGVVDWAKXREIADSIGAYLFVDXAHVAGLIAAGVYP 217
Query: 182 SPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241
+P +A VVTTTTHK+L GPRG +I + G +E+ K K+N AVFP QGG
Sbjct: 218 NPVPHAHVVTTTTHKTLAGPRGGLILAKGGDEELYK-----------KLNSAVFPSAQGG 266
Query: 242 PHNHTITGLAVALKQ 256
P H I G AVALK+
Sbjct: 267 PLXHVIAGKAVALKE 281
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 136 LIVAGASAYARLYDYERIRKVCNKQK---AIMLADMAHISGLVAAGVIPSPFEY-ADVVT 191
+I+ G++ ++ + E +KV N K AI+ D A + + P + AD+V
Sbjct: 144 VIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVV 203
Query: 192 TTTHKSLRGPRGAMIFFRK 210
T+T K + GPRG ++ +K
Sbjct: 204 TSTDKLMEGPRGGLLAGKK 222
>pdb|2AEV|A Chain A, Mj0158, Nabh4-Reduced Form
Length = 374
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 136 LIVAGASAYARLYDYERIRKVCNKQK---AIMLADMAHISGLVAAGVIPSPFEY-ADVVT 191
+I+ G++ ++ + E +KV N K AI+ D A + + P + AD+V
Sbjct: 144 VIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVV 203
Query: 192 TTTHKSLRGPRGAMIFFRK 210
T+T + GPRG ++ +K
Sbjct: 204 TSTDXLMEGPRGGLLAGKK 222
>pdb|1WF9|A Chain A, Solution Structure Of A Novel Beta-Grasp Fold Like
Domain Of Hypothetical Protein (Arabidopsis Thaliana)
Length = 107
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 57 LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ 93
L+ SPS+F +T + P+ RI +L+L HG + Y+
Sbjct: 58 LAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94
>pdb|2DC1|A Chain A, Crystal Structure Of L-Aspartate Dehydrogenase From
Hyperthermophilic Archaeon Archaeoglobus Fulgidus
pdb|2DC1|B Chain B, Crystal Structure Of L-Aspartate Dehydrogenase From
Hyperthermophilic Archaeon Archaeoglobus Fulgidus
Length = 236
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 136 LIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 195
LIV A+A R+R+VC K + I GL A I S E + + TT
Sbjct: 77 LIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDA---IFSASELIEEIVLTTR 133
Query: 196 KSLRGPRGAMIFFRKGV 212
K+ R F RKGV
Sbjct: 134 KNWRQ------FGRKGV 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,274,319
Number of Sequences: 62578
Number of extensions: 377292
Number of successful extensions: 958
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 30
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)