Query 022463
Match_columns 297
No_of_seqs 150 out of 1850
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0112 GlyA Glycine/serine hy 100.0 7.2E-46 1.6E-50 321.1 22.8 262 1-285 43-304 (413)
2 KOG2467 Glycine/serine hydroxy 100.0 2.2E-45 4.7E-50 313.3 20.2 284 1-285 57-341 (477)
3 PLN02271 serine hydroxymethylt 100.0 4.1E-43 8.8E-48 321.4 26.7 283 1-285 165-455 (586)
4 PF00464 SHMT: Serine hydroxym 100.0 3.5E-43 7.6E-48 314.4 20.2 284 2-286 38-321 (399)
5 PLN03226 serine hydroxymethylt 100.0 2.6E-39 5.6E-44 299.9 25.8 283 1-284 51-333 (475)
6 PRK13580 serine hydroxymethylt 100.0 1E-37 2.2E-42 285.0 24.7 261 1-286 66-360 (493)
7 PTZ00094 serine hydroxymethylt 100.0 5.2E-37 1.1E-41 285.1 25.9 271 2-284 52-322 (452)
8 COG0520 csdA Selenocysteine ly 100.0 6.5E-36 1.4E-40 271.6 20.1 251 19-288 55-323 (405)
9 PRK13034 serine hydroxymethylt 100.0 3.6E-31 7.8E-36 243.3 25.7 260 2-284 46-305 (416)
10 COG1104 NifS Cysteine sulfinat 100.0 1E-31 2.2E-36 236.6 18.0 254 2-288 19-284 (386)
11 PRK00011 glyA serine hydroxyme 100.0 2.1E-30 4.6E-35 239.0 26.0 261 2-285 43-303 (416)
12 cd00378 SHMT Serine-glycine hy 100.0 1.2E-29 2.6E-34 233.0 26.5 263 2-285 37-299 (402)
13 PLN02651 cysteine desulfurase 100.0 9.3E-30 2E-34 230.8 17.1 232 27-288 40-283 (364)
14 PF00266 Aminotran_5: Aminotra 100.0 2.1E-29 4.6E-34 229.0 19.3 247 25-288 38-298 (371)
15 PRK10874 cysteine sulfinate de 100.0 2.9E-28 6.4E-33 223.8 19.2 244 27-288 60-319 (401)
16 PRK09295 bifunctional cysteine 100.0 3E-28 6.4E-33 224.1 19.2 244 28-288 65-324 (406)
17 TIGR01977 am_tr_V_EF2568 cyste 100.0 7.9E-28 1.7E-32 219.0 21.1 244 30-288 44-293 (376)
18 TIGR03392 FeS_syn_CsdA cystein 100.0 7.7E-28 1.7E-32 220.8 19.2 245 27-288 57-316 (398)
19 KOG1549 Cysteine desulfurase N 100.0 7.9E-28 1.7E-32 212.8 17.0 247 3-283 62-321 (428)
20 PLN02855 Bifunctional selenocy 100.0 3.3E-27 7.1E-32 218.3 20.3 243 30-288 76-332 (424)
21 TIGR03235 DNA_S_dndA cysteine 100.0 2.5E-27 5.4E-32 214.0 17.9 246 16-288 28-283 (353)
22 TIGR02006 IscS cysteine desulf 100.0 2.9E-27 6.2E-32 217.2 17.4 230 29-288 46-286 (402)
23 PLN02409 serine--glyoxylate am 100.0 1.3E-26 2.9E-31 212.5 21.7 245 26-285 38-293 (401)
24 PRK02769 histidine decarboxyla 99.9 2.9E-26 6.2E-31 207.6 22.1 236 27-284 62-311 (380)
25 TIGR03402 FeS_nifS cysteine de 99.9 9.1E-27 2E-31 212.4 17.8 232 27-288 39-279 (379)
26 cd06453 SufS_like Cysteine des 99.9 3.5E-26 7.6E-31 208.0 20.2 247 26-288 39-298 (373)
27 TIGR01979 sufS cysteine desulf 99.9 3.3E-26 7.3E-31 210.3 20.3 242 29-288 61-318 (403)
28 PLN02724 Molybdenum cofactor s 99.9 3E-26 6.5E-31 225.8 19.1 251 25-286 73-361 (805)
29 TIGR01976 am_tr_V_VC1184 cyste 99.9 1.1E-25 2.4E-30 206.4 20.8 242 26-288 56-317 (397)
30 TIGR01814 kynureninase kynuren 99.9 2.8E-26 6.2E-31 210.9 16.7 232 41-284 80-328 (406)
31 COG0075 Serine-pyruvate aminot 99.9 1.8E-25 3.9E-30 198.4 21.1 241 29-286 37-286 (383)
32 PRK14012 cysteine desulfurase; 99.9 6.4E-26 1.4E-30 208.5 17.7 229 30-288 49-288 (404)
33 PLN03032 serine decarboxylase; 99.9 5.4E-25 1.2E-29 198.1 21.4 260 2-285 41-315 (374)
34 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 4.9E-25 1.1E-29 201.4 19.9 224 26-288 63-303 (387)
35 COG0399 WecE Predicted pyridox 99.9 5.6E-25 1.2E-29 195.6 19.1 228 21-286 29-270 (374)
36 PRK02948 cysteine desulfurase; 99.9 3.7E-25 8E-30 201.9 17.6 230 26-285 39-277 (381)
37 TIGR03403 nifS_epsilon cystein 99.9 8E-25 1.7E-29 199.8 19.3 232 26-288 39-282 (382)
38 cd06451 AGAT_like Alanine-glyo 99.9 3.1E-24 6.8E-29 194.0 22.1 241 28-284 30-278 (356)
39 TIGR02326 transamin_PhnW 2-ami 99.9 1.4E-23 3.1E-28 190.2 21.9 242 28-284 33-283 (363)
40 cd00615 Orn_deC_like Ornithine 99.9 3.1E-24 6.8E-29 189.0 16.9 222 34-282 63-293 (294)
41 KOG2862 Alanine-glyoxylate ami 99.9 2.7E-23 5.9E-28 175.0 18.4 245 26-285 46-302 (385)
42 cd06452 SepCysS Sep-tRNA:Cys-t 99.9 5.4E-23 1.2E-27 186.3 20.9 223 26-288 44-284 (361)
43 TIGR01788 Glu-decarb-GAD gluta 99.9 3.4E-23 7.5E-28 190.0 18.9 242 28-289 78-350 (431)
44 PF01041 DegT_DnrJ_EryC1: DegT 99.9 1.5E-23 3.3E-28 189.9 16.0 224 25-288 24-264 (363)
45 PRK13479 2-aminoethylphosphona 99.9 1.8E-22 3.9E-27 183.4 22.5 242 30-285 37-285 (368)
46 PRK11658 UDP-4-amino-4-deoxy-L 99.9 9.9E-23 2.1E-27 185.6 18.9 235 25-286 32-276 (379)
47 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 2.6E-22 5.6E-27 182.5 20.6 242 9-285 28-288 (370)
48 TIGR01822 2am3keto_CoA 2-amino 99.9 4.5E-22 9.7E-27 182.3 20.0 231 12-284 68-312 (393)
49 TIGR03588 PseC UDP-4-keto-6-de 99.9 4.3E-22 9.2E-27 181.7 19.2 239 24-288 27-282 (380)
50 TIGR03799 NOD_PanD_pyr putativ 99.9 3.1E-22 6.7E-27 187.4 18.0 254 21-288 120-423 (522)
51 TIGR03812 tyr_de_CO2_Arch tyro 99.9 9.5E-22 2.1E-26 178.9 20.4 230 28-286 57-309 (373)
52 PF01276 OKR_DC_1: Orn/Lys/Arg 99.9 1.1E-22 2.3E-27 183.4 13.9 228 34-287 70-323 (417)
53 PRK03080 phosphoserine aminotr 99.9 1.5E-22 3.2E-27 184.4 14.5 236 27-288 45-295 (378)
54 PLN02263 serine decarboxylase 99.9 2.7E-21 5.8E-26 176.9 22.6 238 27-285 130-382 (470)
55 cd00613 GDC-P Glycine cleavage 99.9 1E-21 2.2E-26 180.2 19.8 249 25-288 59-331 (398)
56 PRK13520 L-tyrosine decarboxyl 99.9 1.1E-21 2.3E-26 178.4 19.6 228 28-284 57-302 (371)
57 TIGR01437 selA_rel uncharacter 99.9 2.2E-21 4.8E-26 175.6 21.2 223 28-288 43-286 (363)
58 TIGR03301 PhnW-AepZ 2-aminoeth 99.9 2.7E-21 5.9E-26 174.5 21.6 242 30-285 31-279 (355)
59 COG0156 BioF 7-keto-8-aminopel 99.9 2.5E-21 5.4E-26 173.5 20.4 244 9-295 66-324 (388)
60 cd00616 AHBA_syn 3-amino-5-hyd 99.9 2E-21 4.4E-26 175.3 19.0 232 25-288 17-255 (352)
61 cd06450 DOPA_deC_like DOPA dec 99.9 3.9E-22 8.5E-27 179.5 14.0 215 22-288 30-271 (345)
62 COG3844 Kynureninase [Amino ac 99.9 1.3E-21 2.8E-26 166.0 15.1 255 8-284 55-325 (407)
63 PRK06767 methionine gamma-lyas 99.9 1.6E-21 3.5E-26 177.9 15.9 221 24-290 59-284 (386)
64 PRK07179 hypothetical protein; 99.9 6.5E-21 1.4E-25 175.4 19.9 221 21-284 94-322 (407)
65 PRK08574 cystathionine gamma-s 99.9 4.1E-21 8.9E-26 174.9 16.9 220 24-290 51-275 (385)
66 TIGR01328 met_gam_lyase methio 99.9 6.5E-21 1.4E-25 174.0 18.2 221 24-290 57-283 (391)
67 TIGR01364 serC_1 phosphoserine 99.9 3.1E-21 6.7E-26 173.5 15.8 232 29-287 36-273 (349)
68 cd00611 PSAT_like Phosphoserin 99.9 7E-22 1.5E-26 178.5 11.5 231 27-287 41-281 (355)
69 COG0076 GadB Glutamate decarbo 99.9 1.4E-20 3E-25 173.5 20.1 242 24-288 95-365 (460)
70 PRK08114 cystathionine beta-ly 99.9 3E-21 6.4E-26 174.9 15.1 219 24-290 60-286 (395)
71 PRK07810 O-succinylhomoserine 99.9 8.5E-21 1.8E-25 173.7 17.5 221 24-290 68-293 (403)
72 PRK07503 methionine gamma-lyas 99.9 1.4E-20 3E-25 172.5 18.5 221 24-290 63-289 (403)
73 PRK05355 3-phosphoserine/phosp 99.9 4.1E-21 8.9E-26 173.4 14.7 231 29-287 47-284 (360)
74 PLN02414 glycine dehydrogenase 99.9 2E-20 4.2E-25 184.6 20.5 236 26-286 564-827 (993)
75 TIGR03531 selenium_SpcS O-phos 99.9 3.4E-20 7.4E-25 169.7 20.7 240 28-295 103-360 (444)
76 cd06454 KBL_like KBL_like; thi 99.9 1.3E-20 2.7E-25 169.8 17.3 217 25-284 45-273 (349)
77 PRK08134 O-acetylhomoserine am 99.9 1.4E-20 3E-25 173.4 17.8 239 24-296 62-324 (433)
78 PRK05968 hypothetical protein; 99.9 1.1E-20 2.4E-25 172.5 16.8 220 24-290 61-285 (389)
79 PRK07504 O-succinylhomoserine 99.9 9.3E-21 2E-25 173.4 16.2 219 25-289 64-287 (398)
80 cd00614 CGS_like CGS_like: Cys 99.9 1.1E-20 2.5E-25 171.5 16.6 221 24-290 38-263 (369)
81 PRK05937 8-amino-7-oxononanoat 99.9 5.5E-20 1.2E-24 167.2 20.2 227 15-283 44-283 (370)
82 PLN03227 serine palmitoyltrans 99.9 9.4E-20 2E-24 166.6 21.5 241 10-292 26-291 (392)
83 PRK07811 cystathionine gamma-s 99.9 1.6E-20 3.6E-25 171.2 16.4 220 24-290 59-284 (388)
84 PRK08776 cystathionine gamma-s 99.9 4.7E-20 1E-24 168.8 18.7 218 26-289 60-282 (405)
85 PRK08861 cystathionine gamma-s 99.9 3.6E-20 7.8E-25 168.3 17.7 220 24-290 51-276 (388)
86 PRK13237 tyrosine phenol-lyase 99.9 3.7E-20 7.9E-25 168.1 17.6 239 15-283 67-334 (460)
87 PLN02880 tyrosine decarboxylas 99.8 1.9E-20 4.1E-25 174.9 16.2 247 23-288 115-403 (490)
88 PRK04366 glycine dehydrogenase 99.8 5.9E-20 1.3E-24 171.9 19.4 239 25-284 108-368 (481)
89 PRK08249 cystathionine gamma-s 99.8 3.9E-20 8.4E-25 169.1 17.7 219 24-290 62-286 (398)
90 PLN02590 probable tyrosine dec 99.8 6.6E-20 1.4E-24 171.7 19.3 250 21-289 161-452 (539)
91 PRK05613 O-acetylhomoserine am 99.8 3.3E-20 7.1E-25 170.8 16.8 161 24-210 67-233 (437)
92 PRK13238 tnaA tryptophanase/L- 99.8 9.5E-20 2.1E-24 169.1 20.0 230 18-283 70-334 (460)
93 TIGR01329 cysta_beta_ly_E cyst 99.8 4.7E-20 1E-24 167.7 17.4 217 24-289 45-268 (378)
94 TIGR01324 cysta_beta_ly_B cyst 99.8 4E-20 8.6E-25 167.8 16.7 219 24-289 48-271 (377)
95 PLN02483 serine palmitoyltrans 99.8 1.4E-19 3.1E-24 169.5 20.3 233 10-285 129-389 (489)
96 TIGR01325 O_suc_HS_sulf O-succ 99.8 6.2E-20 1.3E-24 167.2 17.3 218 25-290 53-276 (380)
97 PRK15029 arginine decarboxylas 99.8 6.1E-20 1.3E-24 176.6 18.0 229 33-286 208-466 (755)
98 PRK06234 methionine gamma-lyas 99.8 8.6E-20 1.9E-24 167.2 18.1 220 24-289 62-289 (400)
99 PRK07812 O-acetylhomoserine am 99.8 7.7E-20 1.7E-24 168.3 17.5 239 24-295 67-327 (436)
100 PLN02509 cystathionine beta-ly 99.8 9.3E-20 2E-24 168.5 17.9 220 24-290 131-355 (464)
101 TIGR02618 tyr_phenol_ly tyrosi 99.8 5.6E-20 1.2E-24 166.5 16.0 243 7-284 51-328 (450)
102 PRK15407 lipopolysaccharide bi 99.8 1.5E-19 3.3E-24 167.0 19.2 164 26-212 63-237 (438)
103 PRK06939 2-amino-3-ketobutyrat 99.8 2.1E-19 4.6E-24 164.7 20.1 218 29-284 86-316 (397)
104 PRK08064 cystathionine beta-ly 99.8 1.1E-19 2.4E-24 165.9 17.4 160 24-210 52-216 (390)
105 PRK08133 O-succinylhomoserine 99.8 6.2E-20 1.3E-24 167.6 15.4 220 24-290 59-283 (390)
106 PRK05939 hypothetical protein; 99.8 1.4E-19 3.1E-24 165.3 17.6 159 24-209 45-207 (397)
107 PRK07269 cystathionine gamma-s 99.8 9E-20 2E-24 164.8 16.2 218 24-291 52-275 (364)
108 PRK09028 cystathionine beta-ly 99.8 1.2E-19 2.6E-24 164.8 16.5 218 25-290 60-283 (394)
109 PRK06176 cystathionine gamma-s 99.8 1.5E-19 3.3E-24 164.3 16.6 160 24-210 48-212 (380)
110 PF00282 Pyridoxal_deC: Pyrido 99.8 8.1E-19 1.8E-23 158.8 21.0 252 22-288 71-358 (373)
111 PRK00451 glycine dehydrogenase 99.8 2.3E-19 5E-24 167.1 18.0 242 28-288 110-375 (447)
112 cd06502 TA_like Low-specificit 99.8 2.3E-19 5E-24 161.0 17.3 228 24-286 30-269 (338)
113 PRK08045 cystathionine gamma-s 99.8 2.2E-19 4.7E-24 163.5 17.0 221 24-290 50-275 (386)
114 TIGR00858 bioF 8-amino-7-oxono 99.8 7.3E-19 1.6E-23 158.9 20.0 217 26-285 61-289 (360)
115 TIGR02379 ECA_wecE TDP-4-keto- 99.8 9.1E-19 2E-23 159.1 20.4 163 25-211 30-197 (376)
116 PRK05994 O-acetylhomoserine am 99.8 4.8E-19 1E-23 163.4 18.7 235 25-295 62-322 (427)
117 PRK06460 hypothetical protein; 99.8 5.9E-19 1.3E-23 160.4 18.8 220 24-290 43-267 (376)
118 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.8 7.7E-19 1.7E-23 159.9 19.4 236 23-285 28-271 (375)
119 TIGR01366 serC_3 phosphoserine 99.8 1.2E-19 2.6E-24 164.1 14.0 234 29-288 40-284 (361)
120 cd00617 Tnase_like Tryptophana 99.8 1.2E-18 2.5E-23 159.9 20.5 232 18-284 45-310 (431)
121 PLN02721 threonine aldolase 99.8 1.3E-18 2.7E-23 157.1 20.3 170 25-211 39-223 (353)
122 PLN02822 serine palmitoyltrans 99.8 5.2E-19 1.1E-23 165.4 17.7 243 10-295 137-400 (481)
123 PRK06702 O-acetylhomoserine am 99.8 3.7E-19 8E-24 163.1 16.1 234 24-290 59-316 (432)
124 PRK07671 cystathionine beta-ly 99.8 8.3E-19 1.8E-23 159.4 18.4 219 24-290 48-272 (377)
125 TIGR01825 gly_Cac_T_rel pyrido 99.8 5.9E-19 1.3E-23 161.2 17.5 219 27-284 75-304 (385)
126 PLN02955 8-amino-7-oxononanoat 99.8 2E-18 4.3E-23 158.3 20.6 234 8-280 128-386 (476)
127 PRK08248 O-acetylhomoserine am 99.8 6E-19 1.3E-23 162.6 17.1 159 24-208 62-224 (431)
128 PRK06084 O-acetylhomoserine am 99.8 1.3E-18 2.9E-23 160.1 19.4 235 24-290 56-314 (425)
129 PRK07050 cystathionine beta-ly 99.8 1.2E-18 2.6E-23 159.2 17.9 162 24-211 63-229 (394)
130 TIGR00474 selA seryl-tRNA(sec) 99.8 9.1E-19 2E-23 161.5 17.1 158 35-211 127-303 (454)
131 COG0436 Aspartate/tyrosine/aro 99.8 3.6E-18 7.7E-23 155.7 19.9 242 21-288 60-316 (393)
132 COG1168 MalY Bifunctional PLP- 99.8 4.4E-18 9.6E-23 148.0 18.9 229 28-284 62-307 (388)
133 TIGR00461 gcvP glycine dehydro 99.8 3.3E-18 7.2E-23 167.1 20.0 240 26-285 526-786 (939)
134 PRK08247 cystathionine gamma-s 99.8 2.6E-18 5.6E-23 155.8 18.0 219 24-289 50-273 (366)
135 PRK04311 selenocysteine syntha 99.8 2.3E-18 4.9E-23 159.3 17.7 161 35-211 132-308 (464)
136 PLN02242 methionine gamma-lyas 99.8 1.8E-18 3.9E-23 158.9 16.9 163 24-211 74-241 (418)
137 PRK13578 ornithine decarboxyla 99.8 9.9E-19 2.1E-23 166.9 15.5 235 34-287 178-442 (720)
138 TIGR02080 O_succ_thio_ly O-suc 99.8 1.8E-18 3.9E-23 157.4 16.6 220 24-290 49-274 (382)
139 COG2008 GLY1 Threonine aldolas 99.8 2.4E-18 5.3E-23 149.1 16.2 247 8-288 16-275 (342)
140 PRK06434 cystathionine gamma-l 99.8 1.4E-18 3E-23 157.5 15.3 218 24-290 62-284 (384)
141 COG1103 Archaea-specific pyrid 99.8 8.4E-18 1.8E-22 139.6 17.4 251 11-294 39-308 (382)
142 cd00609 AAT_like Aspartate ami 99.8 1.7E-17 3.7E-22 149.0 20.1 239 18-288 28-282 (350)
143 PRK05958 8-amino-7-oxononanoat 99.8 1.3E-17 2.9E-22 152.1 19.4 217 30-285 84-311 (385)
144 KOG1368 Threonine aldolase [Am 99.8 2.1E-18 4.6E-23 144.8 12.7 185 7-211 37-240 (384)
145 TIGR01821 5aminolev_synth 5-am 99.8 1.2E-17 2.7E-22 153.4 19.1 232 10-284 73-318 (402)
146 PRK05967 cystathionine beta-ly 99.8 5.7E-18 1.2E-22 153.7 16.5 219 24-290 62-286 (395)
147 PRK13392 5-aminolevulinate syn 99.8 8.5E-18 1.8E-22 154.9 18.0 231 11-284 75-319 (410)
148 cd01494 AAT_I Aspartate aminot 99.8 1E-17 2.2E-22 134.7 16.0 164 34-209 4-170 (170)
149 PRK06108 aspartate aminotransf 99.8 2.4E-17 5.2E-22 150.5 20.2 238 21-288 56-309 (382)
150 PRK09064 5-aminolevulinate syn 99.8 1.9E-17 4.2E-22 152.4 19.6 230 12-284 76-319 (407)
151 PLN02452 phosphoserine transam 99.8 4.2E-18 9.2E-23 153.4 14.8 235 26-287 48-288 (365)
152 PRK12566 glycine dehydrogenase 99.8 7.9E-18 1.7E-22 163.6 17.5 234 26-286 543-796 (954)
153 TIGR03576 pyridox_MJ0158 pyrid 99.8 2.3E-17 4.9E-22 148.3 19.0 209 31-283 55-272 (346)
154 PRK06225 aspartate aminotransf 99.8 3.3E-17 7.1E-22 149.6 20.3 226 22-286 62-299 (380)
155 PRK08361 aspartate aminotransf 99.8 2E-17 4.3E-22 151.5 18.2 237 21-287 65-315 (391)
156 PRK06207 aspartate aminotransf 99.8 7.9E-17 1.7E-21 148.2 21.6 237 20-286 72-326 (405)
157 TIGR01326 OAH_OAS_sulfhy OAH/O 99.8 2E-17 4.4E-22 152.4 17.5 161 24-210 55-219 (418)
158 PRK13393 5-aminolevulinate syn 99.8 5.8E-17 1.2E-21 149.2 20.3 231 11-284 74-318 (406)
159 PRK05367 glycine dehydrogenase 99.8 2.3E-17 5E-22 163.5 18.6 232 28-284 540-793 (954)
160 PRK05942 aspartate aminotransf 99.8 1E-16 2.2E-21 147.0 20.5 234 20-284 67-316 (394)
161 PF01053 Cys_Met_Meta_PP: Cys/ 99.8 1.6E-17 3.5E-22 150.3 14.8 220 24-290 53-280 (386)
162 PRK05957 aspartate aminotransf 99.8 1.9E-16 4.1E-21 144.9 21.6 232 21-286 60-308 (389)
163 PRK07550 hypothetical protein; 99.8 1.3E-16 2.8E-21 145.9 20.2 234 21-286 62-311 (386)
164 PRK07582 cystathionine gamma-l 99.7 3.5E-17 7.5E-22 148.4 16.1 215 24-290 49-270 (366)
165 PF01212 Beta_elim_lyase: Beta 99.7 3.6E-18 7.8E-23 149.1 8.7 174 16-211 19-210 (290)
166 TIGR03537 DapC succinyldiamino 99.7 2E-16 4.3E-21 142.9 20.1 231 20-284 30-278 (350)
167 COG2873 MET17 O-acetylhomoseri 99.7 4.9E-17 1.1E-21 140.8 15.0 149 24-200 60-212 (426)
168 PRK15399 lysine decarboxylase 99.7 7.8E-17 1.7E-21 153.8 17.9 222 34-286 199-444 (713)
169 PRK07324 transaminase; Validat 99.7 2E-16 4.4E-21 144.0 19.8 171 20-210 56-238 (373)
170 PRK15400 lysine decarboxylase 99.7 3.2E-17 6.9E-22 156.5 14.8 223 34-286 199-444 (714)
171 TIGR03540 DapC_direct LL-diami 99.7 3.2E-16 6.9E-21 143.2 20.4 233 21-284 62-310 (383)
172 KOG0257 Kynurenine aminotransf 99.7 3E-16 6.6E-21 138.0 19.1 179 19-210 62-261 (420)
173 PRK12414 putative aminotransfe 99.7 2.4E-16 5.2E-21 144.0 19.4 233 20-284 60-307 (384)
174 PLN00175 aminotransferase fami 99.7 3.5E-16 7.6E-21 144.2 20.5 234 20-284 85-332 (413)
175 PLN02368 alanine transaminase 99.7 6.1E-16 1.3E-20 141.8 21.4 239 19-287 100-380 (407)
176 TIGR01365 serC_2 phosphoserine 99.7 7.2E-17 1.6E-21 145.5 14.9 238 26-286 35-284 (374)
177 PLN02187 rooty/superroot1 99.7 4.8E-16 1E-20 145.0 20.8 240 21-286 103-359 (462)
178 PRK07049 methionine gamma-lyas 99.7 2.3E-16 5E-21 145.5 18.4 220 24-290 81-317 (427)
179 PRK09082 methionine aminotrans 99.7 2.2E-16 4.8E-21 144.4 17.6 233 21-284 62-309 (386)
180 PTZ00377 alanine aminotransfer 99.7 1E-15 2.2E-20 143.8 22.2 176 19-208 108-314 (481)
181 TIGR01141 hisC histidinol-phos 99.7 1.7E-16 3.7E-21 143.0 16.3 216 35-288 59-284 (346)
182 PRK08912 hypothetical protein; 99.7 6.8E-16 1.5E-20 141.2 20.4 234 20-284 57-305 (387)
183 PRK07777 aminotransferase; Val 99.7 6.4E-16 1.4E-20 141.4 20.1 234 20-284 55-305 (387)
184 PRK08960 hypothetical protein; 99.7 6.7E-16 1.5E-20 141.3 20.1 232 22-285 65-309 (387)
185 COG0626 MetC Cystathionine bet 99.7 3E-16 6.5E-21 140.8 17.1 221 24-290 61-288 (396)
186 PRK06348 aspartate aminotransf 99.7 1.3E-15 2.8E-20 139.2 21.7 235 20-286 60-309 (384)
187 PRK09276 LL-diaminopimelate am 99.7 9.9E-16 2.1E-20 140.1 20.5 233 21-284 64-312 (385)
188 PRK08363 alanine aminotransfer 99.7 5.8E-16 1.3E-20 142.2 19.0 237 21-287 65-318 (398)
189 TIGR03811 tyr_de_CO2_Ent tyros 99.7 1E-15 2.2E-20 145.0 20.9 249 19-284 112-475 (608)
190 PRK06290 aspartate aminotransf 99.7 1.3E-15 2.9E-20 140.1 21.3 231 21-284 77-323 (410)
191 PRK14807 histidinol-phosphate 99.7 6.7E-16 1.5E-20 139.4 18.8 218 28-287 61-285 (351)
192 PRK07682 hypothetical protein; 99.7 6.7E-16 1.5E-20 140.8 18.9 233 21-284 52-299 (378)
193 PLN00145 tyrosine/nicotianamin 99.7 1.5E-15 3.3E-20 140.5 21.4 243 21-288 89-347 (430)
194 PRK05764 aspartate aminotransf 99.7 1.3E-15 2.7E-20 139.7 20.6 234 22-287 64-314 (393)
195 TIGR02617 tnaA_trp_ase tryptop 99.7 2.2E-16 4.8E-21 142.1 15.0 238 18-278 66-342 (467)
196 PRK07681 aspartate aminotransf 99.7 1.6E-15 3.4E-20 139.3 20.4 228 26-284 69-312 (399)
197 PTZ00433 tyrosine aminotransfe 99.7 1.5E-15 3.3E-20 140.0 20.3 239 20-286 69-330 (412)
198 PRK07337 aminotransferase; Val 99.7 8.6E-16 1.9E-20 140.6 18.5 175 21-211 62-249 (388)
199 PLN02656 tyrosine transaminase 99.7 1.8E-15 3.8E-20 139.4 20.5 241 20-286 67-324 (409)
200 COG1982 LdcC Arginine/lysine/o 99.7 2.5E-16 5.5E-21 145.0 14.7 228 34-286 74-314 (557)
201 PRK13355 bifunctional HTH-doma 99.7 7.5E-16 1.6E-20 145.9 18.4 173 21-209 180-368 (517)
202 KOG1360 5-aminolevulinate synt 99.7 4.6E-16 1E-20 135.5 15.0 237 7-285 196-447 (570)
203 PRK07366 succinyldiaminopimela 99.7 2.3E-15 5E-20 137.7 19.9 233 21-284 63-312 (388)
204 PLN02231 alanine transaminase 99.7 4E-15 8.6E-20 140.7 21.4 176 19-208 161-366 (534)
205 PRK10534 L-threonine aldolase; 99.7 1.9E-15 4.2E-20 135.4 18.3 176 19-211 27-212 (333)
206 PRK12462 phosphoserine aminotr 99.7 1.1E-15 2.4E-20 136.6 16.6 236 26-288 45-288 (364)
207 PRK08068 transaminase; Reviewe 99.7 4.4E-15 9.5E-20 136.0 20.8 232 21-284 65-313 (389)
208 PRK07309 aromatic amino acid a 99.7 3.3E-15 7.1E-20 136.9 19.7 232 22-284 63-310 (391)
209 PRK09147 succinyldiaminopimela 99.7 5.4E-15 1.2E-19 135.7 20.5 178 20-211 59-262 (396)
210 PRK09265 aminotransferase AlaT 99.7 4.3E-15 9.3E-20 136.7 19.8 174 21-209 67-255 (404)
211 PRK07683 aminotransferase A; V 99.7 5.5E-15 1.2E-19 135.2 20.0 177 21-211 60-250 (387)
212 PRK05387 histidinol-phosphate 99.7 2.3E-15 5E-20 136.0 16.6 214 29-284 63-283 (353)
213 PRK07568 aspartate aminotransf 99.7 7.9E-15 1.7E-19 134.6 20.1 234 22-287 62-311 (397)
214 PRK08636 aspartate aminotransf 99.7 1.1E-14 2.3E-19 134.1 20.5 180 19-211 64-265 (403)
215 PRK06107 aspartate aminotransf 99.7 7.4E-15 1.6E-19 135.1 19.1 234 21-286 65-316 (402)
216 TIGR03538 DapC_gpp succinyldia 99.7 1.1E-14 2.4E-19 133.5 20.2 233 20-284 58-316 (393)
217 KOG0053 Cystathionine beta-lya 99.7 2.5E-15 5.3E-20 133.5 15.1 161 24-210 75-240 (409)
218 PRK02731 histidinol-phosphate 99.7 2.8E-15 6.2E-20 136.1 16.0 211 36-284 73-295 (367)
219 TIGR01264 tyr_amTase_E tyrosin 99.7 8.9E-15 1.9E-19 134.5 19.5 239 22-287 69-322 (401)
220 PLN03026 histidinol-phosphate 99.7 4.9E-15 1.1E-19 135.2 17.4 219 28-287 88-313 (380)
221 PRK00950 histidinol-phosphate 99.7 2.8E-15 6E-20 135.9 15.5 210 35-282 74-291 (361)
222 PLN02376 1-aminocyclopropane-1 99.7 1.6E-14 3.5E-19 135.6 21.0 180 17-210 85-295 (496)
223 PRK03317 histidinol-phosphate 99.7 3.1E-15 6.7E-20 136.0 15.7 228 21-284 61-298 (368)
224 PRK09105 putative aminotransfe 99.7 5.7E-15 1.2E-19 134.3 17.3 213 28-284 80-302 (370)
225 PLN00143 tyrosine/nicotianamin 99.7 2.1E-14 4.5E-19 132.3 21.2 174 21-209 69-257 (409)
226 COG1167 ARO8 Transcriptional r 99.7 2.5E-15 5.4E-20 139.9 15.0 176 19-211 125-315 (459)
227 PRK03158 histidinol-phosphate 99.6 5.5E-15 1.2E-19 133.9 16.6 216 27-284 65-292 (359)
228 PRK15481 transcriptional regul 99.6 1.3E-14 2.8E-19 134.6 19.1 230 21-284 116-356 (431)
229 TIGR01265 tyr_nico_aTase tyros 99.6 1.8E-14 3.9E-19 132.6 19.8 238 22-287 69-324 (403)
230 PRK04870 histidinol-phosphate 99.6 6.6E-15 1.4E-19 133.2 16.7 220 28-287 65-290 (356)
231 PRK03321 putative aminotransfe 99.6 4.4E-15 9.5E-20 134.2 15.3 217 27-284 58-286 (352)
232 PRK09148 aminotransferase; Val 99.6 2.4E-14 5.2E-19 131.8 20.3 233 20-284 62-311 (405)
233 PRK08175 aminotransferase; Val 99.6 2.7E-14 5.8E-19 131.0 20.4 232 20-284 61-310 (395)
234 KOG1359 Glycine C-acetyltransf 99.6 3.5E-15 7.6E-20 125.4 12.7 233 8-286 93-337 (417)
235 PLN02450 1-aminocyclopropane-1 99.6 3.3E-14 7E-19 133.0 20.6 178 21-211 81-289 (468)
236 PF00155 Aminotran_1_2: Aminot 99.6 9.4E-15 2E-19 132.4 16.6 236 19-284 37-295 (363)
237 PRK04635 histidinol-phosphate 99.6 4.8E-15 1E-19 134.0 14.6 221 22-286 57-288 (354)
238 TIGR01140 L_thr_O3P_dcar L-thr 99.6 1.7E-14 3.7E-19 129.2 17.6 211 29-288 50-268 (330)
239 PRK01688 histidinol-phosphate 99.6 5.6E-15 1.2E-19 133.4 13.9 214 34-287 61-288 (351)
240 COG1003 GcvP Glycine cleavage 99.6 2.7E-14 5.8E-19 126.1 17.5 226 34-283 113-363 (496)
241 PRK08153 histidinol-phosphate 99.6 2.3E-14 5E-19 130.3 17.8 215 28-284 69-293 (369)
242 PRK04781 histidinol-phosphate 99.6 3.9E-14 8.5E-19 128.5 18.8 222 28-287 61-295 (364)
243 PRK08056 threonine-phosphate d 99.6 4.3E-14 9.4E-19 127.9 18.7 218 28-287 57-286 (356)
244 PF03841 SelA: L-seryl-tRNA se 99.6 1.6E-15 3.5E-20 133.1 8.4 191 37-259 54-261 (367)
245 PRK06855 aminotransferase; Val 99.6 6.9E-14 1.5E-18 129.7 19.4 175 20-209 67-258 (433)
246 PRK05166 histidinol-phosphate 99.6 2.5E-14 5.5E-19 130.1 16.0 212 37-284 78-302 (371)
247 PRK01533 histidinol-phosphate 99.6 2.5E-14 5.4E-19 129.8 15.6 215 27-284 65-292 (366)
248 PLN02414 glycine dehydrogenase 99.6 2.4E-14 5.2E-19 141.9 16.2 222 34-284 152-401 (993)
249 PRK05367 glycine dehydrogenase 99.6 1.4E-14 3E-19 144.0 14.2 222 34-283 125-372 (954)
250 PRK07505 hypothetical protein; 99.6 2.3E-13 5E-18 125.2 21.4 208 34-277 95-318 (402)
251 PLN02607 1-aminocyclopropane-1 99.6 1.3E-13 2.8E-18 128.1 19.8 178 20-210 89-295 (447)
252 PRK14809 histidinol-phosphate 99.6 1E-13 2.3E-18 125.5 18.6 215 28-283 67-291 (357)
253 COG0079 HisC Histidinol-phosph 99.6 8.5E-14 1.9E-18 125.1 17.4 221 21-285 53-283 (356)
254 PRK00854 rocD ornithine--oxo-a 99.6 2.6E-13 5.6E-18 124.8 20.9 221 26-285 83-328 (401)
255 COG1921 SelA Selenocysteine sy 99.6 3.4E-14 7.4E-19 125.7 14.2 194 35-260 73-272 (395)
256 PRK06836 aspartate aminotransf 99.6 9.1E-14 2E-18 127.5 17.4 176 21-211 68-261 (394)
257 PRK02610 histidinol-phosphate 99.6 2.6E-13 5.6E-18 123.6 18.4 169 26-210 66-250 (374)
258 PRK07908 hypothetical protein; 99.5 3.8E-13 8.2E-18 121.4 18.2 215 22-284 54-276 (349)
259 PRK06358 threonine-phosphate d 99.5 4.7E-13 1E-17 121.1 18.6 218 28-287 56-287 (354)
260 TIGR03801 asp_4_decarbox aspar 99.5 3.3E-13 7.1E-18 126.4 17.7 174 24-211 127-327 (521)
261 cd00610 OAT_like Acetyl ornith 99.5 1.2E-12 2.6E-17 120.7 20.7 226 31-284 80-332 (413)
262 PRK05839 hypothetical protein; 99.5 8.8E-13 1.9E-17 120.1 19.0 173 20-211 54-249 (374)
263 TIGR03539 DapC_actino succinyl 99.5 4.7E-13 1E-17 121.2 16.7 219 21-284 51-289 (357)
264 PRK07590 L,L-diaminopimelate a 99.5 5.5E-13 1.2E-17 122.9 17.4 179 20-211 70-266 (409)
265 PRK03967 histidinol-phosphate 99.5 7.3E-13 1.6E-17 119.0 17.1 159 27-211 56-221 (337)
266 PRK07865 N-succinyldiaminopime 99.5 7.3E-13 1.6E-17 120.2 17.2 219 21-284 57-295 (364)
267 KOG1383 Glutamate decarboxylas 99.5 3.5E-13 7.6E-18 120.0 13.7 247 26-295 116-383 (491)
268 KOG0259 Tyrosine aminotransfer 99.5 5.2E-12 1.1E-16 110.0 20.1 214 54-288 129-356 (447)
269 KOG1357 Serine palmitoyltransf 99.5 4.8E-13 1E-17 118.6 13.8 221 26-286 182-426 (519)
270 PRK09275 aspartate aminotransf 99.5 1.6E-12 3.5E-17 121.9 17.9 177 21-211 129-328 (527)
271 COG4992 ArgD Ornithine/acetylo 99.5 2.2E-12 4.9E-17 114.5 17.5 225 37-293 91-336 (404)
272 PRK03244 argD acetylornithine 99.5 4.5E-12 9.7E-17 116.5 19.6 223 37-292 92-332 (398)
273 PRK04073 rocD ornithine--oxo-a 99.5 3.8E-12 8.2E-17 116.9 18.8 216 37-292 89-336 (396)
274 PRK01278 argD acetylornithine 99.5 4.6E-12 9.9E-17 116.1 19.3 225 37-292 80-327 (389)
275 PF06838 Met_gamma_lyase: Meth 99.5 5.2E-13 1.1E-17 116.3 12.2 175 26-212 54-241 (403)
276 KOG3846 L-kynurenine hydrolase 99.5 3.4E-13 7.4E-18 114.2 10.7 238 34-284 115-375 (465)
277 TIGR03542 DAPAT_plant LL-diami 99.5 2.6E-12 5.7E-17 118.1 17.4 178 21-211 70-263 (402)
278 PRK09257 aromatic amino acid a 99.5 3.2E-12 6.9E-17 117.4 17.8 177 20-208 63-260 (396)
279 PTZ00376 aspartate aminotransf 99.5 2.4E-12 5.2E-17 118.5 16.8 173 20-207 66-264 (404)
280 PRK09440 avtA valine--pyruvate 99.5 4.5E-12 9.7E-17 117.2 18.1 180 20-211 68-265 (416)
281 PRK07392 threonine-phosphate d 99.5 6.4E-12 1.4E-16 113.9 18.7 217 29-288 60-290 (360)
282 PLN02672 methionine S-methyltr 99.5 3.5E-12 7.5E-17 127.1 18.2 171 30-211 734-927 (1082)
283 PTZ00125 ornithine aminotransf 99.5 8.5E-12 1.8E-16 114.7 19.4 216 34-284 77-318 (400)
284 TIGR00707 argD acetylornithine 99.4 2E-11 4.3E-16 111.4 19.7 216 35-283 74-308 (379)
285 PRK05664 threonine-phosphate d 99.4 2.6E-11 5.7E-16 108.6 20.0 198 36-284 55-262 (330)
286 KOG0629 Glutamate decarboxylas 99.4 7.5E-13 1.6E-17 116.6 9.6 252 22-288 133-417 (510)
287 TIGR01885 Orn_aminotrans ornit 99.4 2E-11 4.4E-16 112.3 19.2 227 26-293 79-337 (401)
288 TIGR03246 arg_catab_astC succi 99.4 1.8E-11 3.9E-16 112.4 18.5 222 37-294 84-332 (397)
289 PRK02936 argD acetylornithine 99.4 7.3E-11 1.6E-15 107.7 21.0 231 30-292 71-318 (377)
290 PRK03715 argD acetylornithine 99.4 3.4E-11 7.3E-16 110.4 18.2 212 53-293 96-329 (395)
291 PRK02627 acetylornithine amino 99.4 4.8E-11 1E-15 109.5 19.3 231 30-292 81-333 (396)
292 TIGR00713 hemL glutamate-1-sem 99.4 3.6E-11 7.9E-16 111.3 18.2 229 37-292 95-348 (423)
293 PLN02397 aspartate transaminas 99.4 1.2E-11 2.5E-16 114.6 14.5 177 21-207 86-282 (423)
294 PRK12403 putative aminotransfe 99.4 1.9E-10 4E-15 107.4 21.9 243 26-294 98-381 (460)
295 PRK06425 histidinol-phosphate 99.4 5.5E-11 1.2E-15 106.7 17.3 156 28-210 42-209 (332)
296 PRK06959 putative threonine-ph 99.3 5.9E-11 1.3E-15 106.7 17.5 203 29-284 56-268 (339)
297 PRK08637 hypothetical protein; 99.3 1.2E-10 2.6E-15 106.7 18.5 181 19-209 37-242 (388)
298 PRK14808 histidinol-phosphate 99.3 1.4E-10 3.1E-15 104.1 17.3 206 27-284 57-272 (335)
299 TIGR03372 putres_am_tran putre 99.3 3.9E-10 8.6E-15 104.4 20.3 227 37-294 124-381 (442)
300 KOG0256 1-aminocyclopropane-1- 99.3 4.7E-10 1E-14 98.8 19.5 233 24-284 119-378 (471)
301 COG0160 GabT 4-aminobutyrate a 99.3 5.6E-10 1.2E-14 101.8 20.8 235 37-293 106-373 (447)
302 PRK12381 bifunctional succinyl 99.3 2.4E-10 5.2E-15 105.3 18.8 226 37-294 88-336 (406)
303 PRK05093 argD bifunctional N-s 99.3 5.8E-10 1.3E-14 102.7 20.1 211 37-284 89-323 (403)
304 PRK04260 acetylornithine amino 99.3 5.2E-10 1.1E-14 102.0 19.3 214 54-292 88-316 (375)
305 PF02347 GDC-P: Glycine cleava 99.3 3.3E-10 7.2E-15 102.8 16.8 224 35-284 115-364 (429)
306 PLN02624 ornithine-delta-amino 99.3 7.5E-10 1.6E-14 103.8 19.7 210 37-283 124-363 (474)
307 PRK04013 argD acetylornithine/ 99.2 9.4E-10 2E-14 99.5 19.4 216 37-294 73-301 (364)
308 PRK05964 adenosylmethionine--8 99.2 7.5E-10 1.6E-14 102.5 19.1 232 37-293 92-358 (423)
309 TIGR00461 gcvP glycine dehydro 99.2 2E-10 4.2E-15 113.2 14.8 224 35-284 114-361 (939)
310 COG0001 HemL Glutamate-1-semia 99.2 1E-09 2.2E-14 98.7 18.0 224 30-283 93-341 (432)
311 PRK08117 4-aminobutyrate amino 99.2 1.9E-09 4.1E-14 100.1 20.6 231 37-295 93-361 (433)
312 PRK00062 glutamate-1-semialdeh 99.2 5.7E-10 1.2E-14 103.4 16.8 229 37-292 97-350 (426)
313 PRK08360 4-aminobutyrate amino 99.2 2E-09 4.3E-14 100.1 19.6 236 37-295 91-358 (443)
314 PRK07046 aminotransferase; Val 99.2 1.5E-09 3.2E-14 101.1 18.5 231 35-293 120-377 (453)
315 KOG0634 Aromatic amino acid am 99.2 1.6E-09 3.6E-14 96.1 17.5 141 18-172 92-248 (472)
316 PRK04612 argD acetylornithine 99.2 2.2E-09 4.8E-14 98.7 19.4 153 121-295 175-341 (408)
317 PLN02760 4-aminobutyrate:pyruv 99.2 2.3E-09 5E-14 100.9 19.6 150 123-294 247-420 (504)
318 PRK11522 putrescine--2-oxoglut 99.2 3E-09 6.4E-14 99.2 20.2 227 37-294 131-388 (459)
319 PRK06062 hypothetical protein; 99.2 3.8E-09 8.3E-14 98.4 20.6 234 37-294 102-371 (451)
320 PRK06105 aminotransferase; Pro 99.2 5.6E-09 1.2E-13 97.5 21.4 152 122-293 204-377 (460)
321 PRK08354 putative aminotransfe 99.2 2.4E-09 5.1E-14 95.2 18.2 143 36-208 46-196 (311)
322 COG4100 Cystathionine beta-lya 99.2 6.8E-10 1.5E-14 94.2 13.6 173 26-212 65-252 (416)
323 PLN00144 acetylornithine trans 99.2 4.2E-09 9.2E-14 96.2 20.1 155 121-293 155-319 (382)
324 PRK06058 4-aminobutyrate amino 99.2 2.2E-09 4.7E-14 99.9 18.0 235 37-295 106-373 (443)
325 PRK13360 omega amino acid--pyr 99.2 1.5E-08 3.2E-13 94.2 23.4 152 122-294 201-375 (442)
326 PRK09792 4-aminobutyrate trans 99.2 6.8E-09 1.5E-13 96.0 20.6 218 53-293 104-350 (421)
327 PRK07495 4-aminobutyrate amino 99.1 1.2E-08 2.6E-13 94.4 21.6 232 37-293 90-350 (425)
328 COG3033 TnaA Tryptophanase [Am 99.1 1.7E-09 3.7E-14 93.9 14.3 232 17-277 70-343 (471)
329 PRK00615 glutamate-1-semialdeh 99.1 1E-08 2.3E-13 94.8 20.3 219 37-282 100-340 (433)
330 COG0403 GcvP Glycine cleavage 99.1 3.1E-09 6.6E-14 94.4 15.4 226 35-285 125-379 (450)
331 PRK08593 4-aminobutyrate amino 99.1 1.9E-08 4.1E-13 93.6 21.6 142 133-294 207-360 (445)
332 PRK07986 adenosylmethionine--8 99.1 6.8E-09 1.5E-13 96.0 18.4 231 37-293 93-362 (428)
333 PRK07482 hypothetical protein; 99.1 1.5E-08 3.3E-13 94.7 20.7 155 121-294 205-381 (461)
334 PRK06149 hypothetical protein; 99.1 2.9E-08 6.4E-13 100.6 23.9 145 133-294 744-899 (972)
335 PRK07480 putative aminotransfe 99.1 1.6E-08 3.4E-13 94.4 20.2 154 123-294 206-377 (456)
336 PRK05769 4-aminobutyrate amino 99.1 2.1E-08 4.5E-13 93.3 20.9 142 133-294 221-372 (441)
337 PRK09221 beta alanine--pyruvat 99.1 4.5E-08 9.7E-13 91.1 23.0 152 122-294 204-378 (445)
338 PRK12389 glutamate-1-semialdeh 99.1 1.5E-08 3.2E-13 94.0 19.7 203 54-283 113-340 (428)
339 PRK05965 hypothetical protein; 99.1 1.7E-08 3.7E-13 94.2 20.1 152 123-294 202-375 (459)
340 PRK06541 hypothetical protein; 99.1 2.5E-08 5.3E-13 93.2 21.0 152 122-293 207-377 (460)
341 PRK05630 adenosylmethionine--8 99.1 1.1E-08 2.4E-13 94.6 18.0 149 123-293 191-359 (422)
342 PRK08088 4-aminobutyrate amino 99.1 1.4E-08 3.1E-13 94.1 18.6 153 122-292 184-350 (425)
343 PLN02482 glutamate-1-semialdeh 99.1 2.7E-08 5.9E-13 93.0 20.5 217 37-284 146-387 (474)
344 COG0161 BioA Adenosylmethionin 99.1 1.9E-08 4.1E-13 91.6 18.6 156 121-293 199-373 (449)
345 PRK07678 aminotransferase; Val 99.1 3.5E-08 7.6E-13 92.0 21.1 153 124-294 201-373 (451)
346 PRK07036 hypothetical protein; 99.1 1.6E-08 3.5E-13 94.5 18.8 153 123-293 207-380 (466)
347 KOG0628 Aromatic-L-amino-acid/ 99.1 4E-09 8.8E-14 94.3 13.7 255 20-289 103-398 (511)
348 PRK05639 4-aminobutyrate amino 99.0 1.7E-08 3.7E-13 94.1 18.4 235 37-295 103-375 (457)
349 PRK06209 glutamate-1-semialdeh 99.0 1.8E-08 3.8E-13 93.5 18.3 151 121-290 173-339 (431)
350 PRK06777 4-aminobutyrate amino 99.0 4.5E-08 9.8E-13 90.6 20.9 229 37-293 90-350 (421)
351 PRK06943 adenosylmethionine--8 99.0 4.6E-08 9.9E-13 91.2 20.9 153 121-293 207-380 (453)
352 PRK07483 hypothetical protein; 99.0 6.1E-08 1.3E-12 90.2 21.4 157 123-295 186-359 (443)
353 PRK06082 4-aminobutyrate amino 99.0 5.4E-08 1.2E-12 90.9 20.8 155 122-294 217-382 (459)
354 KOG1402 Ornithine aminotransfe 99.0 4.5E-08 9.8E-13 84.2 18.3 152 120-295 194-363 (427)
355 PRK07481 hypothetical protein; 99.0 8.7E-08 1.9E-12 89.3 21.6 143 133-294 213-374 (449)
356 KOG2040 Glycine dehydrogenase 99.0 2.3E-09 5E-14 99.2 10.1 159 23-203 579-750 (1001)
357 PRK06173 adenosylmethionine--8 99.0 6.9E-08 1.5E-12 89.4 20.1 152 121-293 192-364 (429)
358 PRK09264 diaminobutyrate--2-ox 99.0 9.8E-08 2.1E-12 88.5 20.6 210 57-293 110-352 (425)
359 TIGR00700 GABAtrnsam 4-aminobu 99.0 6.3E-08 1.4E-12 89.7 19.3 154 122-293 182-349 (420)
360 PRK06148 hypothetical protein; 99.0 8.7E-08 1.9E-12 97.4 21.6 233 37-294 670-939 (1013)
361 PRK06917 hypothetical protein; 99.0 1.4E-07 3E-12 87.9 21.2 157 121-294 184-358 (447)
362 TIGR02407 ectoine_ectB diamino 99.0 1.4E-07 3E-12 87.1 20.8 213 57-293 106-348 (412)
363 TIGR00508 bioA adenosylmethion 99.0 7.9E-08 1.7E-12 89.1 19.2 152 121-293 193-365 (427)
364 PF00202 Aminotran_3: Aminotra 98.9 4.8E-08 1E-12 87.8 16.5 231 37-293 66-329 (339)
365 TIGR00709 dat 2,4-diaminobutyr 98.9 1.6E-07 3.4E-12 87.5 20.2 143 133-294 206-358 (442)
366 PRK06916 adenosylmethionine--8 98.9 1.6E-07 3.5E-12 87.8 19.7 231 37-293 106-383 (460)
367 PRK07030 adenosylmethionine--8 98.9 1.3E-07 2.8E-12 88.4 18.8 149 122-293 201-374 (466)
368 PRK08742 adenosylmethionine--8 98.9 3.2E-07 6.9E-12 85.9 21.1 152 121-293 222-395 (472)
369 TIGR03251 LAT_fam L-lysine 6-t 98.9 2.1E-07 4.6E-12 86.4 19.7 154 121-294 204-373 (431)
370 PRK06938 diaminobutyrate--2-ox 98.9 3.2E-07 7E-12 85.8 20.8 216 57-295 134-384 (464)
371 TIGR00699 GABAtrns_euk 4-amino 98.9 2.3E-07 5.1E-12 86.3 18.1 150 121-291 237-400 (464)
372 KOG0633 Histidinol phosphate a 98.8 1.1E-07 2.4E-12 79.5 14.0 207 53-292 88-307 (375)
373 PF05889 SLA_LP_auto_ag: Solub 98.8 2.3E-08 5E-13 89.0 10.7 214 41-285 67-295 (389)
374 COG1932 SerC Phosphoserine ami 98.8 3.2E-08 7E-13 86.6 11.1 233 29-288 49-290 (365)
375 PRK06931 diaminobutyrate--2-ox 98.8 5E-07 1.1E-11 84.4 19.8 140 134-294 226-377 (459)
376 PRK06918 4-aminobutyrate amino 98.8 9.5E-07 2.1E-11 82.5 21.1 143 133-293 219-371 (451)
377 KOG1358 Serine palmitoyltransf 98.8 7.5E-08 1.6E-12 84.6 11.6 164 21-210 134-317 (467)
378 KOG0258 Alanine aminotransfera 98.8 9.7E-08 2.1E-12 83.9 12.3 140 18-171 105-258 (475)
379 KOG1401 Acetylornithine aminot 98.7 9.1E-07 2E-11 78.5 15.6 225 37-287 105-355 (433)
380 PRK12566 glycine dehydrogenase 98.7 3.1E-07 6.7E-12 90.6 13.3 225 35-288 129-378 (954)
381 PF12897 Aminotran_MocR: Alani 98.7 1.6E-06 3.5E-11 76.7 16.0 177 15-211 57-270 (425)
382 COG1448 TyrB Aspartate/tyrosin 98.6 2.6E-06 5.7E-11 75.2 14.3 241 18-283 61-331 (396)
383 PRK08297 L-lysine aminotransfe 98.5 7.2E-06 1.6E-10 76.4 18.1 154 121-293 211-379 (443)
384 COG3977 Alanine-alpha-ketoisov 98.5 2.3E-05 5E-10 67.1 18.3 179 22-212 70-266 (417)
385 KOG1404 Alanine-glyoxylate ami 98.5 1.2E-05 2.6E-10 71.1 16.8 121 150-293 235-365 (442)
386 PLN02974 adenosylmethionine-8- 98.5 2.6E-06 5.6E-11 84.2 13.3 157 123-295 567-750 (817)
387 KOG1403 Predicted alanine-glyo 98.1 8.1E-05 1.7E-09 63.8 13.2 237 29-293 86-364 (452)
388 KOG1405 4-aminobutyrate aminot 98.0 6.9E-05 1.5E-09 65.6 10.3 153 120-293 253-421 (484)
389 KOG2040 Glycine dehydrogenase 97.5 0.0012 2.6E-08 62.3 11.7 225 35-286 168-416 (1001)
390 PLN02994 1-aminocyclopropane-1 97.5 0.00038 8.2E-09 55.0 7.1 59 22-84 88-151 (153)
391 KOG3843 Predicted serine hydro 97.5 0.00015 3.3E-09 61.2 4.9 162 57-243 84-259 (432)
392 KOG2790 Phosphoserine aminotra 97.4 0.0013 2.7E-08 56.2 9.0 125 158-291 172-297 (370)
393 KOG1411 Aspartate aminotransfe 96.2 0.037 8.1E-07 48.8 9.1 139 53-203 123-279 (427)
394 KOG1412 Aspartate aminotransfe 96.1 0.15 3.3E-06 44.5 11.9 135 54-198 103-255 (410)
395 KOG0630 Predicted pyridoxal-de 95.0 0.18 3.9E-06 46.6 9.1 155 118-290 272-439 (838)
396 PF04864 Alliinase_C: Allinase 88.5 1.6 3.4E-05 38.9 6.5 153 26-211 43-211 (363)
397 COG2870 RfaE ADP-heptose synth 82.3 5.1 0.00011 36.6 6.7 47 121-167 129-177 (467)
398 COG1504 Uncharacterized conser 79.6 5.4 0.00012 29.3 4.9 49 118-167 47-95 (121)
399 PRK13396 3-deoxy-7-phosphohept 76.7 27 0.00058 31.6 9.6 57 120-176 219-286 (352)
400 COG1087 GalE UDP-glucose 4-epi 73.5 30 0.00065 30.6 8.7 100 54-169 3-117 (329)
401 cd05126 Mth938 Mth938 domain. 73.2 15 0.00033 27.5 6.2 50 119-169 45-94 (117)
402 PRK12595 bifunctional 3-deoxy- 73.0 39 0.00085 30.7 9.8 57 117-173 232-299 (360)
403 TIGR01361 DAHP_synth_Bsub phos 72.5 44 0.00094 28.9 9.6 54 120-173 143-206 (260)
404 KOG1371 UDP-glucose 4-epimeras 70.0 26 0.00057 31.2 7.6 109 53-169 4-127 (343)
405 PRK13397 3-deoxy-7-phosphohept 68.4 62 0.0013 27.8 9.5 56 119-174 132-197 (250)
406 cd02067 B12-binding B12 bindin 66.3 19 0.0004 26.7 5.5 51 119-169 36-89 (119)
407 smart00642 Aamy Alpha-amylase 64.9 6 0.00013 31.6 2.6 27 143-169 65-91 (166)
408 PRK09441 cytoplasmic alpha-amy 61.9 6.3 0.00014 37.3 2.6 28 142-169 75-102 (479)
409 TIGR02026 BchE magnesium-proto 61.6 22 0.00047 33.9 6.1 53 119-172 49-103 (497)
410 PF00128 Alpha-amylase: Alpha 59.8 6.3 0.00014 34.2 2.1 29 141-169 45-73 (316)
411 PF02310 B12-binding: B12 bind 58.9 21 0.00046 26.2 4.6 51 120-170 38-90 (121)
412 KOG0352 ATP-dependent DNA heli 58.6 96 0.0021 29.0 9.2 48 133-181 113-162 (641)
413 KOG2142 Molybdenum cofactor su 56.9 14 0.00029 35.9 3.8 119 159-286 192-319 (728)
414 PRK02261 methylaspartate mutas 56.5 53 0.0011 25.3 6.5 47 120-166 41-90 (137)
415 PF13378 MR_MLE_C: Enolase C-t 54.5 22 0.00049 25.8 4.0 50 119-168 4-53 (111)
416 cd00248 Mth938-like Mth938-lik 53.8 63 0.0014 23.7 6.2 49 118-168 37-86 (109)
417 cd02072 Glm_B12_BD B12 binding 53.2 48 0.001 25.3 5.6 49 120-168 37-88 (128)
418 PF02603 Hpr_kinase_N: HPr Ser 52.8 20 0.00044 27.1 3.6 39 124-167 73-111 (127)
419 smart00481 POLIIIAc DNA polyme 52.1 63 0.0014 20.9 6.3 47 118-166 13-59 (67)
420 PF14871 GHL6: Hypothetical gl 52.1 71 0.0015 24.4 6.5 47 121-167 1-63 (132)
421 cd02070 corrinoid_protein_B12- 51.7 53 0.0011 27.0 6.2 51 119-169 119-173 (201)
422 PLN00196 alpha-amylase; Provis 51.5 12 0.00026 34.9 2.5 28 142-169 86-113 (428)
423 COG2877 KdsA 3-deoxy-D-manno-o 51.2 32 0.0007 29.1 4.7 55 119-173 141-202 (279)
424 COG1646 Predicted phosphate-bi 51.0 70 0.0015 27.1 6.6 54 113-168 22-77 (240)
425 cd05560 Xcc1710_like Xcc1710_l 50.6 75 0.0016 23.3 6.2 55 118-174 38-93 (109)
426 COG0296 GlgB 1,4-alpha-glucan 50.0 14 0.0003 36.0 2.8 30 140-169 205-235 (628)
427 TIGR00160 MGSA methylglyoxal s 49.7 50 0.0011 25.6 5.2 48 123-170 63-113 (143)
428 PF04131 NanE: Putative N-acet 49.3 53 0.0011 26.9 5.5 71 120-196 52-122 (192)
429 TIGR02370 pyl_corrinoid methyl 49.1 65 0.0014 26.4 6.3 51 119-169 121-175 (197)
430 TIGR03586 PseI pseudaminic aci 47.8 1.8E+02 0.0038 26.1 9.2 83 117-203 141-234 (327)
431 TIGR01501 MthylAspMutase methy 47.4 62 0.0013 24.9 5.5 43 120-162 39-81 (134)
432 PRK13602 putative ribosomal pr 47.3 43 0.00093 23.2 4.2 45 122-168 16-60 (82)
433 TIGR00789 flhB_rel flhB C-term 47.2 17 0.00038 25.3 2.2 19 151-169 30-48 (82)
434 COG2099 CobK Precorrin-6x redu 46.0 45 0.00096 28.6 4.8 52 118-170 10-75 (257)
435 COG3010 NanE Putative N-acetyl 45.7 55 0.0012 27.2 5.1 68 121-194 87-155 (229)
436 PF02571 CbiJ: Precorrin-6x re 45.3 22 0.00047 30.5 3.0 92 54-166 3-98 (249)
437 cd03315 MLE_like Muconate lact 45.2 45 0.00098 28.6 5.1 50 118-167 188-237 (265)
438 cd02069 methionine_synthase_B1 44.2 78 0.0017 26.4 6.1 51 119-169 125-177 (213)
439 COG1803 MgsA Methylglyoxal syn 43.8 63 0.0014 24.5 4.8 47 123-169 65-114 (142)
440 PLN02361 alpha-amylase 43.7 19 0.00041 33.2 2.6 28 142-169 70-97 (401)
441 cd02071 MM_CoA_mut_B12_BD meth 43.6 66 0.0014 24.0 5.2 49 120-168 37-88 (122)
442 PRK00366 ispG 4-hydroxy-3-meth 43.3 49 0.0011 29.9 4.9 49 118-167 87-136 (360)
443 COG1066 Sms Predicted ATP-depe 43.2 57 0.0012 30.2 5.3 48 119-166 154-215 (456)
444 COG1954 GlpP Glycerol-3-phosph 43.1 57 0.0012 26.2 4.7 48 121-172 12-61 (181)
445 TIGR01060 eno phosphopyruvate 42.8 60 0.0013 30.3 5.7 46 121-166 317-362 (425)
446 TIGR02990 ectoine_eutA ectoine 42.7 70 0.0015 27.2 5.7 51 118-172 163-216 (239)
447 TIGR01769 GGGP geranylgeranylg 42.6 1E+02 0.0022 25.6 6.4 46 121-167 12-59 (205)
448 COG0434 SgcQ Predicted TIM-bar 42.2 73 0.0016 27.1 5.4 41 127-167 171-211 (263)
449 PRK10785 maltodextrin glucosid 42.0 20 0.00042 35.1 2.5 49 121-169 177-247 (598)
450 TIGR01768 GGGP-family geranylg 41.9 1.3E+02 0.0028 25.3 7.0 46 120-166 15-60 (223)
451 PRK13601 putative L7Ae-like ri 41.3 64 0.0014 22.4 4.3 45 123-169 14-58 (82)
452 TIGR01362 KDO8P_synth 3-deoxy- 40.9 73 0.0016 27.4 5.4 55 117-172 124-186 (258)
453 PRK08057 cobalt-precorrin-6x r 40.5 29 0.00063 29.8 3.0 92 54-168 5-99 (248)
454 cd03319 L-Ala-DL-Glu_epimerase 40.2 50 0.0011 29.2 4.7 50 118-167 236-285 (316)
455 PF14639 YqgF: Holliday-juncti 39.7 34 0.00075 26.8 3.1 44 118-161 48-91 (150)
456 PRK09505 malS alpha-amylase; R 39.0 25 0.00053 35.0 2.6 26 144-169 288-313 (683)
457 COG0552 FtsY Signal recognitio 38.5 37 0.00079 30.4 3.4 85 120-209 209-306 (340)
458 COG1105 FruK Fructose-1-phosph 38.4 1.2E+02 0.0025 27.0 6.5 54 117-170 108-168 (310)
459 PF02571 CbiJ: Precorrin-6x re 38.4 92 0.002 26.7 5.8 22 149-170 54-75 (249)
460 PRK12313 glycogen branching en 38.2 25 0.00055 34.6 2.6 26 144-169 216-241 (633)
461 PRK04169 geranylgeranylglycery 38.2 1.4E+02 0.003 25.4 6.7 53 112-166 13-65 (232)
462 COG3473 Maleate cis-trans isom 38.2 2.4E+02 0.0052 23.6 9.0 49 117-168 160-211 (238)
463 TIGR00612 ispG_gcpE 1-hydroxy- 38.2 57 0.0012 29.2 4.5 48 119-167 80-127 (346)
464 TIGR03275 methan_mark_8 putati 37.9 10 0.00022 32.2 -0.2 53 147-200 173-225 (259)
465 COG0352 ThiE Thiamine monophos 37.8 43 0.00093 28.0 3.5 46 122-168 24-72 (211)
466 PRK00077 eno enolase; Provisio 37.4 90 0.0019 29.1 6.0 46 121-166 316-361 (425)
467 PRK10933 trehalose-6-phosphate 36.6 28 0.0006 33.7 2.6 26 144-169 77-102 (551)
468 PLN00191 enolase 36.5 94 0.002 29.3 5.9 48 120-167 347-394 (457)
469 PRK13398 3-deoxy-7-phosphohept 36.3 69 0.0015 27.8 4.7 55 120-174 145-209 (266)
470 TIGR02402 trehalose_TreZ malto 35.9 30 0.00064 33.4 2.6 25 145-169 157-181 (542)
471 TIGR02403 trehalose_treC alpha 35.9 28 0.00061 33.5 2.5 26 144-169 71-96 (543)
472 cd03313 enolase Enolase: Enola 35.7 94 0.002 28.8 5.8 46 121-166 316-361 (408)
473 PF07085 DRTGG: DRTGG domain; 35.5 72 0.0016 22.9 4.1 39 123-166 52-90 (105)
474 PF05368 NmrA: NmrA-like famil 34.9 78 0.0017 26.3 4.8 44 121-166 54-99 (233)
475 TIGR00196 yjeF_cterm yjeF C-te 34.9 78 0.0017 27.3 4.9 45 122-169 83-127 (272)
476 PRK12457 2-dehydro-3-deoxyphos 34.9 1.1E+02 0.0024 26.7 5.6 56 117-173 138-203 (281)
477 PTZ00081 enolase; Provisional 34.8 1E+02 0.0022 29.0 5.8 47 120-166 335-381 (439)
478 PF01248 Ribosomal_L7Ae: Ribos 34.2 1.2E+02 0.0026 21.3 5.0 46 122-169 20-66 (95)
479 cd02068 radical_SAM_B12_BD B12 34.2 1.6E+02 0.0035 21.8 6.1 49 123-172 28-79 (127)
480 TIGR00034 aroFGH phospho-2-deh 34.0 51 0.0011 29.7 3.6 29 148-176 239-269 (344)
481 COG0108 RibB 3,4-dihydroxy-2-b 34.0 73 0.0016 26.3 4.2 35 132-166 155-190 (203)
482 PRK05402 glycogen branching en 33.8 32 0.00068 34.6 2.5 26 144-169 311-336 (726)
483 TIGR01515 branching_enzym alph 33.4 33 0.00072 33.6 2.6 25 145-169 203-227 (613)
484 TIGR00715 precor6x_red precorr 33.4 2.2E+02 0.0049 24.4 7.4 93 54-166 3-97 (256)
485 PRK08057 cobalt-precorrin-6x r 32.8 3.2E+02 0.0069 23.4 8.3 22 149-170 53-74 (248)
486 cd03316 MR_like Mandelate race 32.6 79 0.0017 28.4 4.8 51 118-168 248-298 (357)
487 TIGR00629 uvde UV damage endon 32.6 49 0.0011 29.4 3.2 32 141-172 192-223 (312)
488 cd02065 B12-binding_like B12 b 32.5 1.2E+02 0.0027 22.1 5.1 53 120-172 37-91 (125)
489 cd04736 MDH_FMN Mandelate dehy 32.1 1.2E+02 0.0025 27.7 5.6 50 119-169 244-297 (361)
490 PF07905 PucR: Purine cataboli 31.8 1.6E+02 0.0035 21.9 5.7 41 125-166 64-104 (123)
491 COG0826 Collagenase and relate 31.7 1E+02 0.0022 28.0 5.1 10 120-129 46-55 (347)
492 TIGR01928 menC_lowGC/arch o-su 31.7 1.1E+02 0.0024 27.3 5.4 50 118-167 231-280 (324)
493 cd00308 enolase_like Enolase-s 31.7 1E+02 0.0022 25.7 5.0 49 120-168 155-203 (229)
494 KOG3974 Predicted sugar kinase 31.7 63 0.0014 27.9 3.5 46 121-169 91-140 (306)
495 PLN03244 alpha-amylase; Provis 31.6 39 0.00084 34.1 2.6 29 142-170 435-463 (872)
496 PRK06683 hypothetical protein; 31.5 1.1E+02 0.0024 21.1 4.3 45 122-168 16-60 (82)
497 PF05209 MinC_N: Septum format 31.3 50 0.0011 23.7 2.6 44 120-163 23-74 (99)
498 PLN03033 2-dehydro-3-deoxyphos 31.3 1.7E+02 0.0036 25.7 6.1 56 116-172 137-200 (290)
499 PF04392 ABC_sub_bind: ABC tra 31.1 3.5E+02 0.0076 23.4 8.7 26 140-165 139-164 (294)
500 PF10087 DUF2325: Uncharacteri 30.7 1.1E+02 0.0024 21.7 4.4 40 124-166 41-80 (97)
No 1
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-46 Score=321.08 Aligned_cols=262 Identities=48% Similarity=0.784 Sum_probs=248.8
Q ss_pred CccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEe
Q 022463 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 80 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~ 80 (297)
||+++|++.|+|+||+||.|||+++++++++|+.+.++..++||++.. +|.+.||+.+|++++.++++|||+|+..
T Consensus 43 ~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~a----nVQPhSGs~AN~av~~All~pGDtimgm 118 (413)
T COG0112 43 MEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYA----NVQPHSGSQANQAVYLALLQPGDTIMGL 118 (413)
T ss_pred HHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcc----ccCCCCchHHHHHHHHHHcCCCCeEecc
Confidence 589999999999999999999999999999999999999999999985 5999999999999999999999999999
Q ss_pred cCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc
Q 022463 81 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ 160 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~ 160 (297)
+..|++|+++.. .+.+.|..++.+++++|++++.+|+|.+++...+++|++|+.+.|.|....|++++++||++.
T Consensus 119 ~l~~GGHltHg~-----~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~V 193 (413)
T COG0112 119 DLSHGGHLTHGS-----PVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEV 193 (413)
T ss_pred cCCCCCcccCCC-----CCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHh
Confidence 999999999885 577888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCC
Q 022463 161 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240 (297)
Q Consensus 161 g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (297)
|+++++|.||.+|.+..+.++.|+..+|+++.|+||+|.||+||+|+++++ ++.++++..-+|+.+|
T Consensus 194 GA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrGG~Il~~~e-------------el~kkin~aVFPg~qg 260 (413)
T COG0112 194 GAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTNDE-------------ELAKKINSAVFPGLQG 260 (413)
T ss_pred CceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCceEEEeccH-------------HHHHHhhhhcCCccCC
Confidence 999999999999999999999999999999999999999999999999984 6888999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 241 GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 241 t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
+|..+.++|.+.|+.+.++. +++...++..+.++.|.+.|.+..
T Consensus 261 gpl~HviAakaVa~~Eal~p-~fk~Ya~qVv~NAkaLAe~l~~~G 304 (413)
T COG0112 261 GPLMHVIAAKAVAFKEALEP-EFKEYAKQVVKNAKALAEALKERG 304 (413)
T ss_pred ChHHHHHHHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999 999999999999999998888743
No 2
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-45 Score=313.34 Aligned_cols=284 Identities=74% Similarity=1.162 Sum_probs=268.4
Q ss_pred CccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEe
Q 022463 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 80 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~ 80 (297)
||++||.|.|.|+||+||.|||+++++++++|-.|+++..+.|+.+++.||++|++-||+.+|+++..++++|+|+|+-.
T Consensus 57 meAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGL 136 (477)
T KOG2467|consen 57 MEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGL 136 (477)
T ss_pred HHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc
Q 022463 81 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ 160 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~ 160 (297)
++.+++|+++.+....+.+......++..|+.+|+.++.+|+|.|++....++|++|+.+.|.|....|..++++||.+.
T Consensus 137 DLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~ 216 (477)
T KOG2467|consen 137 DLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKV 216 (477)
T ss_pred cCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhc
Confidence 99999999999999888888888889999999999999999999999988889999999888999999999999999999
Q ss_pred CCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhh-ccCCccchhhHHHHhhhcccCCCC
Q 022463 161 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEI-NKQGKEVFYDYEEKINQAVFPGLQ 239 (297)
Q Consensus 161 g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 239 (297)
|+++++|.||..|.+..++-+.||+++|+++.++||+|.||+||+|+.++..+.. ...|....+++.++++..-+|+.+
T Consensus 217 gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQ 296 (477)
T KOG2467|consen 217 GAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQ 296 (477)
T ss_pred CceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999987643 466777778899999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 240 GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 240 ~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
|.|+.+.+++++.||++...+ .+...+++..+.++.|.+.|.+..
T Consensus 297 GGPHNhtIaalAvALkQa~tp-efk~Yq~qV~~Nakala~~l~~~G 341 (477)
T KOG2467|consen 297 GGPHNHTIAALAVALKQAMTP-EFKEYQKQVLKNAKALASALISRG 341 (477)
T ss_pred CCCCcchHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999 888888888888888888887654
No 3
>PLN02271 serine hydroxymethyltransferase
Probab=100.00 E-value=4.1e-43 Score=321.41 Aligned_cols=283 Identities=58% Similarity=0.957 Sum_probs=247.8
Q ss_pred CccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEe
Q 022463 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 80 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~ 80 (297)
+|+++|.+.|+|++|+||.|||+++++++++|..+.++..++|++++++||++|.+.||+.+|++++.++++|||+|+..
T Consensus 165 ~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~l 244 (586)
T PLN02271 165 MEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGL 244 (586)
T ss_pred HHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEe
Confidence 47899999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred cCCCCCcccccccc-cccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHh
Q 022463 81 DLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 159 (297)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~ 159 (297)
+.+|++|+++.+.. ....+...|..++.++++++++++.+|++++++.+...+|++|+++.+.+....|+++|+++|++
T Consensus 245 dl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAde 324 (586)
T PLN02271 245 DSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADK 324 (586)
T ss_pred cCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHH
Confidence 99999999987643 22345667777888999998788999999999966656999999977778899999999999999
Q ss_pred cCCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCC----cc---chhhHHHHhhh
Q 022463 160 QKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQG----KE---VFYDYEEKINQ 232 (297)
Q Consensus 160 ~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g----~~---~~~~~~~~~~~ 232 (297)
+|+++++|+||.+|.++.+..+.|+.++|++++++||||.||+||+|+++++... ...| +. ..+++.++++.
T Consensus 325 vGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrGG~I~~r~~~~~-~~~g~~gs~s~~~~~~d~~~kI~~ 403 (586)
T PLN02271 325 CGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRGGIIFYRKGPKL-RKQGMLLSHGDDNSHYDFEEKINF 403 (586)
T ss_pred cCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCceEEEecccccc-cccCCccccccccccHHHHHHhhc
Confidence 9999999999999999999998888899999999999999999999999876532 1111 11 22357778888
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 233 AVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 233 ~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
..+|+..|+|..+.++++++|++++... .+....++..+.++.|.+.|.+..
T Consensus 404 aVfPglqgGphn~~IAalAvalkea~~~-efk~Ya~QVv~NAkaLA~~L~~~G 455 (586)
T PLN02271 404 AVFPSLQGGPHNNHIAALAIALKQVATP-EYKAYMQQVKKNAQALASALLRRK 455 (586)
T ss_pred ccCCccccChhHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8899999999999999999999999887 667777888888888888886543
No 4
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=100.00 E-value=3.5e-43 Score=314.43 Aligned_cols=284 Identities=52% Similarity=0.874 Sum_probs=229.3
Q ss_pred ccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEec
Q 022463 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 81 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~ 81 (297)
++++|.+.|+|++|+||.|+|++.++++++|+.++++++++|++++++|.++|.+.||+.+|++++.++++|||+|+..+
T Consensus 38 ~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~ 117 (399)
T PF00464_consen 38 EALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLS 117 (399)
T ss_dssp HHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEE
T ss_pred HHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecC
Confidence 57899999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC
Q 022463 82 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK 161 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g 161 (297)
..|++|+++......+++...+..+..+++++|++++.+|+|++++.+.+++|++|+++.|++....|+++++++|++.|
T Consensus 118 l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vg 197 (399)
T PF00464_consen 118 LPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVG 197 (399)
T ss_dssp GGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT
T ss_pred hhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcC
Confidence 99999998887665555666777788999999989999999999999999999999999999999999999999999999
Q ss_pred CEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 162 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 162 ~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
+++++|.+|.+|.+..+..+.|+.++|++++|+||+|.||+||+|++++..+.....+.....++.++++...+|+.+|+
T Consensus 198 a~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~ 277 (399)
T PF00464_consen 198 AYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGG 277 (399)
T ss_dssp -EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS
T ss_pred cEEEecccccccceehheecCccccceEEEeeccccccccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccC
Confidence 99999999999999999999999999999999999999999999999954432223333333478899999999999999
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+..+.++|++.++.+..+. .+....++..+.++.|.+.|.+...
T Consensus 278 ~h~~~iaalAval~ea~~~-~fk~Ya~qVv~NAk~La~~L~~~G~ 321 (399)
T PF00464_consen 278 PHMHRIAALAVALKEALSP-EFKEYAKQVVKNAKALAEALQERGF 321 (399)
T ss_dssp --HHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cchhHHHHHHHHHhcccCH-HHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999999999999877 6678888888888888888877653
No 5
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=2.6e-39 Score=299.94 Aligned_cols=283 Identities=72% Similarity=1.120 Sum_probs=238.9
Q ss_pred CccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEe
Q 022463 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 80 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~ 80 (297)
+|++++.+.|+|++|++|+|+|+++...+++|+.++++.+++|+.+++.|++++.+.||+.+|++++.++++|||+|+..
T Consensus 51 ~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~ 130 (475)
T PLN03226 51 MEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGL 130 (475)
T ss_pred HHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEEC
Confidence 36889999999999999999999999999999999999999999998877667778999999999999999999999998
Q ss_pred cCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc
Q 022463 81 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ 160 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~ 160 (297)
+..+++++.+........+...+..+..+++.++++++.+|+++|++.+.+.+|++|+++.++|+...|+++|.++|+++
T Consensus 131 d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ 210 (475)
T PLN03226 131 DLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKV 210 (475)
T ss_pred CCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHc
Confidence 88888887765543333334445556666777787889999999999998668888877777899999999999999999
Q ss_pred CCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCC
Q 022463 161 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240 (297)
Q Consensus 161 g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (297)
|+++++|+||++|.++.+..+.|+.++|++++++||||.||.||+|+++++.......|...+.++.+.++...++...+
T Consensus 211 ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g 290 (475)
T PLN03226 211 GALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQG 290 (475)
T ss_pred CCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCC
Confidence 99999999999999999887777789999999999999999999999987643222222222224444566666677788
Q ss_pred CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 241 GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 241 t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+++.+.++++.+|++++.+. +++.++++..+++++|.+.|++.
T Consensus 291 ~p~~~~iaal~aAl~~i~~~-~~~~~~~~~~~na~~L~~~L~~~ 333 (475)
T PLN03226 291 GPHNHTIAALAVALKQAMTP-EFKAYQKQVKANAAALANRLMSK 333 (475)
T ss_pred CchHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999988 99999999999999999999874
No 6
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=1e-37 Score=285.01 Aligned_cols=261 Identities=34% Similarity=0.624 Sum_probs=226.0
Q ss_pred CccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCC-------
Q 022463 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKP------- 73 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~------- 73 (297)
+++|+|.+.|+|++|+||.|+|++.++++++|..+.++..++||+++. +|.+.||+.+|++++.++++|
T Consensus 66 ~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~a----nvqp~Sg~~An~~v~~all~~~~~~p~~ 141 (493)
T PRK13580 66 QLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHA----YVQPHSGADANLVAFWAILAHKVESPAL 141 (493)
T ss_pred HHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcc----cccCCCcHHHHHHHHHHHhcccccCcch
Confidence 368999999999999999999999999999999999999999999985 599999999999999999976
Q ss_pred ------------------------CCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHh
Q 022463 74 ------------------------HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 129 (297)
Q Consensus 74 ------------------------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l 129 (297)
||+|+..+.+|++++++.+ ...+.+..+..++++++++++.+|++++++.+
T Consensus 142 ~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~-----~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~ 216 (493)
T PRK13580 142 EKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF-----RPNISGKMFHQRSYGVDPDTGLLDYDEIAALA 216 (493)
T ss_pred hccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCc-----ccchhhheeeeEecccCcccCccCHHHHHHHH
Confidence 8999999999999988774 34566666778888888778999999999999
Q ss_pred hhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC---CCCCCccEEEecCCccCCCCCceEE
Q 022463 130 TLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRGAMI 206 (297)
Q Consensus 130 ~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~---~~~~~~D~~~~s~~K~l~gp~gG~i 206 (297)
++.++++++.+.|+++...|+++|.++|+++|+++++|+||++|+++.+... .++.++|++++|+||+|+||.||+|
T Consensus 217 ~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I 296 (493)
T PRK13580 217 REFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLV 296 (493)
T ss_pred hhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEE
Confidence 9844444444888998899999999999999999999999999999866543 4455899999999999999999999
Q ss_pred EEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 207 FFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 207 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
++++ ++.++++.. .|...|++..+.++++..++.++.+. .....+++..+++++|.+.|++...
T Consensus 297 ~~~~--------------~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e~~~~-ef~~y~~~l~~Na~~La~~L~~~G~ 360 (493)
T PRK13580 297 LAKK--------------EYADAVDKG-CPLVLGGPLPHVMAAKAVALAEARTP-EFQKYAQQVVDNARALAEGFLKRGA 360 (493)
T ss_pred EecH--------------HHHHHHhhC-CCcccCCCccHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9998 456666544 47778888889999999999999876 6667888899999999998877653
No 7
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=5.2e-37 Score=285.07 Aligned_cols=271 Identities=63% Similarity=1.053 Sum_probs=226.4
Q ss_pred ccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEec
Q 022463 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 81 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~ 81 (297)
++|++.+.|+|++|+|+++++.+.+..+.+|+.+|+.++++|++++++|++++.++||+.+|..++.+++++||+|+++.
T Consensus 52 ~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~ 131 (452)
T PTZ00094 52 ECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLD 131 (452)
T ss_pred HHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecc
Confidence 67899999999999999999999999999999999999999999887654455556788899888999999999999999
Q ss_pred CCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC
Q 022463 82 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK 161 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g 161 (297)
.+|+++..++..+........+..+..++++++ .++.+|++++++.+++.+|+++++..+++|...|+++|.++|+++|
T Consensus 132 ~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~id~~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~g 210 (452)
T PTZ00094 132 LPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN-EKGLIDYDKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVG 210 (452)
T ss_pred cccCCcccccccccccccccceeeeeeeecccC-CCCCcCHHHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcC
Confidence 999999988765433333334444555556666 3589999999999976678888776667999999999999999999
Q ss_pred CEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 162 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 162 ~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
+++++|++|++|.++.+..+.++.++|++++|+||||+||.||+++++++... .+...+....+|...|+
T Consensus 211 a~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~Gg~l~~~~~~~~----------~l~~~~~~~~~p~~~G~ 280 (452)
T PTZ00094 211 AYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRSGLIFYRKKVKP----------DIENKINEAVFPGLQGG 280 (452)
T ss_pred CEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCceEEEEecccch----------HHHHhhccccCCCCCCC
Confidence 99999999999999988777666689999999999999999999999775310 12223333445566788
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++...++++.+|++++... +++.++++..+++++|.+.|++.
T Consensus 281 ~~~~~iaal~~al~~~~~~-~~~~~~~~i~~l~~~l~~~L~~~ 322 (452)
T PTZ00094 281 PHNHQIAAIAVQLKEVQSP-EWKEYAKQVLKNAKALAAALEKR 322 (452)
T ss_pred chHHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999887 88999999999999999999774
No 8
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-36 Score=271.57 Aligned_cols=251 Identities=22% Similarity=0.305 Sum_probs=206.7
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcCCCC-CCCcceEEecCChH--HHHHHHHHh---cCCCCeEEEecCCCCCcccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFRLDP-EKWGVNVQSLSGSP--SNFQVYTAL---LKPHDRIMALDLPHGGHLSHGY 92 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g~~~-~~~~~~v~~~sG~~--~~~~~~~~~---~~~gd~Vl~~~~~~~~~~~~~~ 92 (297)
...+.......+..+++|+.+++++|+++ + +|+||+|++ +|+ +..++ +++||+|+++..+|+++..||.
T Consensus 55 r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~----eIvft~~tT~aln~-va~~l~~~~~~gdeIv~s~~EH~sn~~pw~ 129 (405)
T COG0520 55 RGAHTLAEEATDLYEAAREAVARFLNADSSD----EIVFTRGTTEALNL-VARGLGRSLKPGDEIVVSDLEHHSNIVPWQ 129 (405)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCCCCC----eEEEeCChhHHHHH-HHHHhhhhhcCCCEEEEccCcchhhHHHHH
Confidence 33444557777888899999999999995 5 499999995 444 66666 6999999999999999999998
Q ss_pred ccccc-ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 93 QTDTK-KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 93 ~~~~~-~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
.+..+ |++ ++.++ .+ +++.+|.+.+++.+++ +|++|.+ +.|| +|.+.|+++|.++||++|++++||++
T Consensus 130 ~~~~~~Ga~-----v~~i~--~~-~~g~~~~~~~~~~i~~-~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 130 ELAKRTGAK-----VRVIP--LD-DDGLLDLDALEKLITP-KTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred HHHHhcCcE-----EEEEe--cC-CCCCcCHHHHHHhcCC-CceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 77543 443 44554 55 6789999999999988 9999999 6777 89999999999999999999999999
Q ss_pred hhcccccccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccchhhHHHH---hhhcccCCC--CC
Q 022463 170 HISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVFYDYEEK---INQAVFPGL--QG 240 (297)
Q Consensus 170 ~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~~~~~~~---~~~~~~~~~--~~ 240 (297)
|++++.+.+++.+ ++|++++|+||||+||.| |+++++++.... ...|+.. .+..+. ......|.. .|
T Consensus 201 q~~~h~~idv~~l---~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~-~~~~~~~~~~~~~~~p~rfe~g 276 (405)
T COG0520 201 QAAGHLPIDVQEL---GCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGM-IEYVSRDEGVTLAELPLRFEAG 276 (405)
T ss_pred cccCccCCCchhc---CCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCc-eeeecccccccccCcchhhccC
Confidence 9999999999988 999999999999999999 999999987433 2333321 111111 111112222 89
Q ss_pred CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 241 GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 241 t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
||++....++.+|++++.+. |++.++++.+.|.+++.++|+++++++
T Consensus 277 Tpn~~~~i~l~aAl~~~~~i-g~~~i~~~e~~L~~~~~~~L~~~~~v~ 323 (405)
T COG0520 277 TPNIAGAIGLAAALDYLLEI-GMEAIEAHERELTEYLLEGLSELPGVE 323 (405)
T ss_pred CchHHHHHhHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999999999 999999999999999999999999876
No 9
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=3.6e-31 Score=243.33 Aligned_cols=260 Identities=48% Similarity=0.773 Sum_probs=203.8
Q ss_pred ccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEec
Q 022463 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 81 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~ 81 (297)
+++++.+.++|+.|++|+|.+++++...++|+.+++.+++++|.+.. .++++||+.+|.+++.++++|||+|+++.
T Consensus 46 ~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~a----lv~~~SG~~A~~~~l~al~~~GD~Vl~~~ 121 (416)
T PRK13034 46 EAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYA----NVQPHSGSQANGAVYLALLKPGDTILGMS 121 (416)
T ss_pred HHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCce----EEecCCcHHHHHHHHHHhcCCCCEEEEcC
Confidence 57788889999999999999999999999998888899999999863 35568999999999999999999999999
Q ss_pred CCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC
Q 022463 82 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK 161 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g 161 (297)
..|.+++..... ....+..+..+.+++++.++.+|++++++.+...++++|++..+.+|...|+++|.++|++||
T Consensus 122 ~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g 196 (416)
T PRK13034 122 LSHGGHLTHGAK-----VSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVG 196 (416)
T ss_pred ccceeeeecCCc-----ceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcC
Confidence 988875332211 111122233344566656778999999999865578888875566899999999999999999
Q ss_pred CEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 162 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 162 ~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
+++++|+||+.|....+....++.++|++++|+||+|+||.||+++++++ ....++....+++..++
T Consensus 197 ~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~GG~v~~~~~-------------~~~~~~~~~~~~~~~~~ 263 (416)
T PRK13034 197 ALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMILTNDE-------------EIAKKINSAVFPGLQGG 263 (416)
T ss_pred CEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCCeEEEECcH-------------HHHHHHHhhcCCcccCC
Confidence 99999999999998877666565679999999999999999999888764 23344444344444445
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++.+.++++..++..+... +..+.+++.+++.++|.++|++.
T Consensus 264 ~~~~~~aa~~~al~~~~~~-~~~~~~~~l~~~a~~l~~~L~~~ 305 (416)
T PRK13034 264 PLMHVIAAKAVAFGEALQP-EFKTYAKQVIANAQALAEVLKER 305 (416)
T ss_pred ccHHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566677777777777655 55567788889999999988766
No 10
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-31 Score=236.56 Aligned_cols=254 Identities=17% Similarity=0.224 Sum_probs=204.1
Q ss_pred ccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHH--hc----CCC
Q 022463 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA--LL----KPH 74 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~--~~----~~g 74 (297)
|+|.+.+...| |+|.+ .+.......++-+.+|+.+++++|+++++ |+||||.+ +|..++.+ .. +.|
T Consensus 19 ~~m~~~~~~~f--gNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~e----IiFTSG~TEsnNlaI~g~~~a~~~~~~~ 91 (386)
T COG1104 19 EAMLPYLTEVF--GNPSS-LHSFGREARKAVEEAREQIAKLLGADPEE----IIFTSGATESNNLAIKGAALAYRNAQKG 91 (386)
T ss_pred HHHHHHHHhhc--CCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCCe----EEEecCCcHHHHHHHHhhHHhhhcccCC
Confidence 56667777776 44555 44445566777778999999999999865 99999984 55446665 21 257
Q ss_pred CeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHH
Q 022463 75 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYER 152 (297)
Q Consensus 75 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~ 152 (297)
.+|+++..||++.+.++.+++.++.+++ .+ +++ .++.+|+++|+++|++ +|.+|.+ +.+| +|++.|+++
T Consensus 92 ~HIIts~iEH~aVl~~~~~Le~~g~~Vt-----yl--~V~-~~G~v~~e~L~~al~~-~T~LVSim~aNnE~G~IQpI~e 162 (386)
T COG1104 92 KHIITSAIEHPAVLNTCRYLERQGFEVT-----YL--PVD-SNGLVDLEQLEEALRP-DTILVSIMHANNETGTIQPIAE 162 (386)
T ss_pred CeEEEcccccHHHHHHHHHHHhcCCeEE-----Ee--CCC-CCCeEcHHHHHHhcCC-CceEEEEEecccCeeecccHHH
Confidence 8999999999999998887755565533 34 455 5799999999999998 8999988 5556 899999999
Q ss_pred HHHHHHhcCCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh-ccCCccchhhHHHHh
Q 022463 153 IRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI-NKQGKEVFYDYEEKI 230 (297)
Q Consensus 153 i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~-~~~g~~~~~~~~~~~ 230 (297)
|.++|+++|+++|+|++|++|-+|+++... ++|++++|+|| |.||+| |+++.++..+.. +..|+..
T Consensus 163 i~~i~k~~~i~fHvDAvQa~Gkipi~~~~~---~vD~ls~SaHK-~~GpkGiGaLyv~~~~~~~p~i~GGgQ-------- 230 (386)
T COG1104 163 IGEICKERGILFHVDAVQAVGKIPIDLEEL---GVDLLSFSAHK-FGGPKGIGALYVRPGVRLEPLIHGGGQ-------- 230 (386)
T ss_pred HHHHHHHcCCeEEEehhhhcCceecccccc---CcceEEeehhh-ccCCCceEEEEECCCCccCceeccCcC--------
Confidence 999999999999999999999999999887 79999999999 789999 999998876654 3333331
Q ss_pred hhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC-CCcc
Q 022463 231 NQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS-ENIE 288 (297)
Q Consensus 231 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-~~~~ 288 (297)
....++||.|.+.++++..|++...+ .++....+...++++|.+.|.+. |.+.
T Consensus 231 ---E~g~RsGTenv~~Ivg~~~A~~~a~~--~~~~~~~~~~~lr~~l~~~l~~~~p~~~ 284 (386)
T COG1104 231 ---ERGLRSGTENVPGIVGFGKAAEIAVE--ELEEENARLRKLRDRLEDGLLEIIPDVY 284 (386)
T ss_pred ---CCCCCCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 12234899999999999999987764 47888888999999999999976 6544
No 11
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.98 E-value=2.1e-30 Score=239.04 Aligned_cols=261 Identities=50% Similarity=0.796 Sum_probs=203.9
Q ss_pred ccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEec
Q 022463 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 81 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~ 81 (297)
++|...+.++|..++++++++.+.+..+.+|+.+++.+++++|++++ .++++||++++..++.++++|||+|+++.
T Consensus 43 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~----~i~~~sgt~al~~~l~~l~~~gd~Vl~~~ 118 (416)
T PRK00011 43 EAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYA----NVQPHSGSQANAAVYFALLKPGDTILGMD 118 (416)
T ss_pred HHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce----eeecCCchHHHHHHHHHhcCCCCEEEEec
Confidence 46666777889999999999888888999998899999999999874 37778999888778888999999999999
Q ss_pred CCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC
Q 022463 82 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK 161 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g 161 (297)
.+|+++...+.... ..+...+.+.++++.+++.+|++++++.+++.+|++|+++.+++|...|+++|.++|+++|
T Consensus 119 ~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~ 193 (416)
T PRK00011 119 LAHGGHLTHGSPVN-----FSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVG 193 (416)
T ss_pred cccCCccccccccc-----cccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcC
Confidence 99988765443211 1111123344556545688999999999976579999886567888889999999999999
Q ss_pred CEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 162 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 162 ~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
+++|+|++|+.|....+..+.++.++|++++|+||+|+||+||+++++++ ++.+.+.....++..++
T Consensus 194 ~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~gg~i~~~~~-------------~~~~~l~~~~~~~~~~~ 260 (416)
T PRK00011 194 AYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILTNDE-------------ELAKKINSAVFPGIQGG 260 (416)
T ss_pred CEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCceEEEeCCH-------------HHHHHHHHHhCccccCC
Confidence 99999999998876544333333478999999999999999999999653 34555544444444556
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
+....++++..++..+.+. ++++..++.+++++++.+.|++..
T Consensus 261 ~~~~~~aa~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g 303 (416)
T PRK00011 261 PLMHVIAAKAVAFKEALEP-EFKEYAQQVVKNAKALAEALAERG 303 (416)
T ss_pred ccHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6667778877788777766 788889999999999999998763
No 12
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.97 E-value=1.2e-29 Score=233.01 Aligned_cols=263 Identities=54% Similarity=0.851 Sum_probs=204.3
Q ss_pred ccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEec
Q 022463 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 81 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~ 81 (297)
++|...+..+|+.+.++++.|.+.+..+.+++.+++.+++++|+++. .+++++|+.++..++.++++|||+|+++.
T Consensus 37 ~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~----~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~ 112 (402)
T cd00378 37 EAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYA----NVQPHSGSQANLAVYFALLEPGDTIMGLD 112 (402)
T ss_pred HHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCce----eeecCCcHHHHHHHHHHhcCCCCEEEEec
Confidence 56677777899999999999999999999999899999999999864 37778898888888999999999999999
Q ss_pred CCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC
Q 022463 82 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK 161 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g 161 (297)
.+|+++...+... .+...|..+..++++.+++++.+|++++++.+.+.++++++++.+++|...|+++|.++|+++|
T Consensus 113 ~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~ 189 (402)
T cd00378 113 LSHGGHLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVG 189 (402)
T ss_pred CccCccccccccc---cccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcC
Confidence 9998876654321 1222344345555555533689999999999975589999885557888889999999999999
Q ss_pred CEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 162 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 162 ~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
+++++|++|+.|....+....++.++|++++|+||+|+||+||+++++++ ++.+.+.....+...++
T Consensus 190 ~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i~~~~~-------------~~~~~l~~~~~~~~~~~ 256 (402)
T cd00378 190 AYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKG-------------ELAKKINSAVFPGLQGG 256 (402)
T ss_pred CEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEEEeccH-------------HHHHHHHHHhCccccCC
Confidence 99999999988776543323333368999999999999999998888762 23444444334444556
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
++...++++..++..+... ++++..++..++.+++.+.|+++.
T Consensus 257 ~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g 299 (402)
T cd00378 257 PHLHVIAAKAVALKEALEP-EFKAYAKQVVENAKALAEALKERG 299 (402)
T ss_pred chHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6667777878888877765 667788888999999999998863
No 13
>PLN02651 cysteine desulfurase
Probab=99.97 E-value=9.3e-30 Score=230.81 Aligned_cols=232 Identities=15% Similarity=0.200 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHH----hcCCCCeEEEecCCCCCcccccccccccccce
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTA----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 101 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~----~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 101 (297)
...++.+.+++.+++++|+++++ +++++|+ .++..++.+ +.++||+|+++..+|+++..++..+...++
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~~----v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~-- 113 (364)
T PLN02651 40 ESEDAVEKARAQVAALIGADPKE----IIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGF-- 113 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCe----EEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCC--
Confidence 34555667789999999998764 7887776 454434443 357899999999999998766653332232
Q ss_pred eeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 102 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
.++.+ +.+ .++.+|++++++.+++ +++++++ +.+| +|.+.|+++|.++||++|+++++|++|++|..++++
T Consensus 114 ---~v~~v--~~~-~~~~~d~~~l~~~i~~-~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~ 186 (364)
T PLN02651 114 ---EVTYL--PVK-SDGLVDLDELAAAIRP-DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDV 186 (364)
T ss_pred ---EEEEE--ccC-CCCcCCHHHHHHhcCC-CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCc
Confidence 24344 444 5678999999999987 8999988 6666 899999999999999999999999999999999998
Q ss_pred CCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHH
Q 022463 180 IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 255 (297)
Q Consensus 180 ~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~ 255 (297)
..+ ++|++++|+||| +||.| |+++++++...+ ...|+.. . .....||+++..++++.+||+
T Consensus 187 ~~~---~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l~p~~~g~~~--------~---~~~~~GT~~~~~~~~l~~al~ 251 (364)
T PLN02651 187 DDL---GVDLMSISGHKI-YGPKGVGALYVRRRPRVRLEPLMSGGGQ--------E---RGRRSGTENTPLVVGLGAACE 251 (364)
T ss_pred ccC---CCCEEEechhhh-CCCCceEEEEEcCCCCCCCCccccCCCc--------c---CCccCCCccHHHHHHHHHHHH
Confidence 877 899999999997 79999 999999865322 1212110 0 112378999999999999999
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccC-CCCcc
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNN-SENIE 288 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~~~~ 288 (297)
++.+. .++++++.+.+.+++.+.|++ +++++
T Consensus 252 ~~~~~--~~~i~~~~~~l~~~l~~~l~~~~~~~~ 283 (364)
T PLN02651 252 LAMKE--MDYDEKHMKALRERLLNGLRAKLGGVR 283 (364)
T ss_pred HHHHh--HHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 99854 599999999999999999985 56544
No 14
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.97 E-value=2.1e-29 Score=229.02 Aligned_cols=247 Identities=19% Similarity=0.207 Sum_probs=189.5
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh---cCCCCeEEEecCCCCCccccccccc-cccc
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---LKPHDRIMALDLPHGGHLSHGYQTD-TKKI 99 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~---~~~gd~Vl~~~~~~~~~~~~~~~~~-~~~~ 99 (297)
.....++-+++|+.+++++|+++++ .|++++|++ ++..++.++ +++||+|++...+|++...++.... ..++
T Consensus 38 ~~~~~~~~~~~r~~la~~lg~~~~~---~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~ 114 (371)
T PF00266_consen 38 SREFAEILEEAREALAKLLGAPPDE---EVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGA 114 (371)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSSTTE---EEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTE
T ss_pred hhhhhHHHHHHHHHHHHhcCCcccc---ccccccccchhhhhhhhccccccccccccccccccccccccccccccccchh
Confidence 3455666668889999999998822 488877774 665577777 7999999999999999987776553 2333
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cC-CCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccc
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GA-SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~-~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~ 177 (297)
+ ++.++ .+ .++.+|++++++.+++ +|++|.+ +. +.+|...|+++|.++||++|+++++|++|++|.+++
T Consensus 115 ~-----v~~i~--~~-~~~~~~~~~~~~~l~~-~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~i 185 (371)
T PF00266_consen 115 E-----VRVIP--AD-PGGSLDLEDLEEALNP-DTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPI 185 (371)
T ss_dssp E-----EEEEE--EG-TTSSCSHHHHHHHHHT-TESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS-
T ss_pred h-----hcccc--cc-ccchhhhhhhhhhhcc-ccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccc
Confidence 3 44454 33 4578999999999986 9999999 54 448999999999999999999999999999999999
Q ss_pred cCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccchhh-HHHHhhhcccCC--CCCCCchHHHHHH
Q 022463 178 GVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVFYD-YEEKINQAVFPG--LQGGPHNHTITGL 250 (297)
Q Consensus 178 ~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~~~-~~~~~~~~~~~~--~~~t~~~~~~~al 250 (297)
++..+ ++|++++|+|| |+||+| |+++++++...+ ...++..... ..+.......+. ..||+++..++++
T Consensus 186 d~~~~---~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l 261 (371)
T PF00266_consen 186 DLDEL---GADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYAL 261 (371)
T ss_dssp -TTTT---TESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHH
T ss_pred ccccc---ccceeeecccc-cCCCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhH
Confidence 99887 89999999999 999999 999999986433 2223321101 111111111122 2689999999999
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
..+++.+.+. |+++++++...+.+++.+.|++++.++
T Consensus 262 ~~al~~~~~~-g~~~i~~~~~~l~~~~~~~l~~~~~~~ 298 (371)
T PF00266_consen 262 NEALKLLEEI-GIERIRERIRELAEYLREALEELPGIE 298 (371)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred HHHHhhhhcc-ccccchhhhhhHHHHHHhhhhcCCcee
Confidence 9999999877 999999999999999999999998755
No 15
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.96 E-value=2.9e-28 Score=223.78 Aligned_cols=244 Identities=17% Similarity=0.215 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHHHcCC-CCCCCcceEEecCChH-HHHHHHHHh----cCCCCeEEEecCCCCCcccccccccccccc
Q 022463 27 YIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-SNFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKIS 100 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~-~~~~~~~~v~~~sG~~-~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 100 (297)
...+.-+.+|+.+++++|+ ++++ |++++|++ ++..++.++ +++||+|++++.+|++.+.++.... +
T Consensus 60 ~~~~~~~~~r~~la~~~g~~~~~~----i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~----~ 131 (401)
T PRK10874 60 RLTARYEAAREQVAQLLNAPDAKN----IVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVA----Q 131 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCE----EEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHH----H
Confidence 3445556778999999999 5554 88888874 544466666 4799999999999998766554331 2
Q ss_pred eeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 101 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 101 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
..|..++.++ .+ .++.+|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.|..+.+
T Consensus 132 ~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~ 207 (401)
T PRK10874 132 QTGAKVVKLP--LG-ADRLPDVDLLPELITP-RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPAD 207 (401)
T ss_pred HhCCEEEEEe--cC-CCCcCCHHHHHHhcCc-CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCC
Confidence 2233344454 44 4578899999999987 8999988 6777 89999999999999999999999999999988877
Q ss_pred CCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccch--hhHHHHhhhcccCC--CCCCCchHHHHHH
Q 022463 179 VIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVF--YDYEEKINQAVFPG--LQGGPHNHTITGL 250 (297)
Q Consensus 179 ~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~~~--~~~t~~~~~~~al 250 (297)
+..+ ++|++++|+|| ++||.| |+++.+++...+ ...|+... ..+ +.......+. ..||+++..++++
T Consensus 208 ~~~~---~~d~~~~s~~K-~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~Gt~~~~~~~al 282 (401)
T PRK10874 208 VQAL---DIDFYAFSGHK-LYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSF-DGFTPQSAPWRFEAGTPNVAGVIGL 282 (401)
T ss_pred chhc---CCCEEEEeccc-ccCCCccEEEEEchHHHhcCCCeecCCcceEeecc-CccCCCCChhhccCCCcCHHHHHHH
Confidence 6555 79999999999 568999 999998875322 11122110 000 0011111111 1689999999999
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
.+|++.+.+. |++++++++..+.+++.+.|+++++++
T Consensus 283 ~~al~~l~~~-g~~~~~~~~~~l~~~l~~~l~~~~g~~ 319 (401)
T PRK10874 283 SAALEWLADI-DINQAESWSRSLATLAEDALAKLPGFR 319 (401)
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999888 999999999999999999999887654
No 16
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.96 E-value=3e-28 Score=224.08 Aligned_cols=244 Identities=18% Similarity=0.204 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHHHcCC-CCCCCcceEEecCChH-HHHHHHHH----hcCCCCeEEEecCCCCCcccccccccccccce
Q 022463 28 IDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-SNFQVYTA----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 101 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~-~~~~~~~~v~~~sG~~-~~~~~~~~----~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 101 (297)
..+.-+.+|+.+++++|+ ++++ |++++|++ ++..++.+ .+++||+|+++..+|++.+.++.... +.
T Consensus 65 ~~~~~~~~r~~la~~~~~~~~~~----v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~----~~ 136 (406)
T PRK09295 65 ATEKMENVRKQAALFINARSAEE----LVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLC----AR 136 (406)
T ss_pred HHHHHHHHHHHHHHHcCcCCCCe----EEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHH----HH
Confidence 344455688999999998 4543 88988885 54445554 46899999999999998876665431 12
Q ss_pred eeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 102 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
.|.++..+ +.+ .++.+|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.|..++++
T Consensus 137 ~g~~v~~v--~~~-~~~~~d~~~l~~~i~~-~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~ 212 (406)
T PRK09295 137 VGAELRVI--PLN-PDGTLQLETLPALFDE-RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDV 212 (406)
T ss_pred cCcEEEEE--ecC-CCCCCCHHHHHHhcCC-CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCc
Confidence 23234444 444 4577999999999987 8999998 6777 899999999999999999999999999999988887
Q ss_pred CCCCCCCccEEEecCCccCCCCCc-eEEEEecCchh--hccCCccch---hhHHHHhhhcccCC--CCCCCchHHHHHHH
Q 022463 180 IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE--INKQGKEVF---YDYEEKINQAVFPG--LQGGPHNHTITGLA 251 (297)
Q Consensus 180 ~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~--~~~~g~~~~---~~~~~~~~~~~~~~--~~~t~~~~~~~al~ 251 (297)
..+ ++|++++|+|| ++||.| |+++++++... +...++... ............+. ..||+++..++++.
T Consensus 213 ~~~---~~D~~~~s~~K-~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~ 288 (406)
T PRK09295 213 QAL---DCDFYVFSGHK-LYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLG 288 (406)
T ss_pred hhc---CCCEEEeehhh-ccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHH
Confidence 665 89999999999 678999 99999987532 222222110 00000000000111 27899999999999
Q ss_pred HHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 252 VALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 252 ~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+|++++.+. |++.++++.+.+.+++.++|++++.++
T Consensus 289 ~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~~~~ 324 (406)
T PRK09295 289 AALDYVSAL-GLNNIAEYEQNLMHYALSQLESVPDLT 324 (406)
T ss_pred HHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999988 999999999999999999999887654
No 17
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.96 E-value=7.9e-28 Score=219.01 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
...+++++.+++++|++..+ .|++++|+ +++..++.+++++||+|+++..+|++...++..+.. ..|..++.
T Consensus 44 ~~~~~~~~~la~~~~~~~~~---~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~----~~g~~~~~ 116 (376)
T TIGR01977 44 REVEETRQLLAKLFNAPSSA---HVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKE----QIGVEITI 116 (376)
T ss_pred HHHHHHHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHH----HcCcEEEE
Confidence 44455669999999986542 38887776 566667888889999999999888887655432211 11323434
Q ss_pred eecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCC
Q 022463 109 MPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEY 186 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~ 186 (297)
+ +.+ .++.+|++++++.+++ +|+++++ +++| +|.+.|+++|.++|+++|+++|+|++|++|..+.++..+ +
T Consensus 117 v--~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~---~ 189 (376)
T TIGR01977 117 V--KCD-NEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTEL---A 189 (376)
T ss_pred E--ecC-CCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhc---C
Confidence 4 444 4577899999999987 8999988 6666 899999999999999999999999999999999887766 8
Q ss_pred ccEEEecCCccCCCCCc-eEEEEecCchhh-ccCCccchh-hHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcCh
Q 022463 187 ADVVTTTTHKSLRGPRG-AMIFFRKGVKEI-NKQGKEVFY-DYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITF 263 (297)
Q Consensus 187 ~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~ 263 (297)
+|++++|+|||+++|.| |+++++++...+ ...++.... .+.+...........+|++...++++.++++++.+. |+
T Consensus 190 ~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~-g~ 268 (376)
T TIGR01977 190 IDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKI-GI 268 (376)
T ss_pred CCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHh-CH
Confidence 99999999999999999 999888875433 333332210 111100000000115789999999999999999988 99
Q ss_pred hhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 264 SHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 264 ~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+.++++.+.+++++.+.|++.+.++
T Consensus 269 ~~~~~~~~~l~~~~~~~l~~~~~~~ 293 (376)
T TIGR01977 269 ANIAKKECMLTEKLLNGLREINKVK 293 (376)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 9999999999999999999877643
No 18
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.96 E-value=7.7e-28 Score=220.78 Aligned_cols=245 Identities=17% Similarity=0.169 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHHHHHcCCC-CCCCcceEEecCChH-HHHHHHHHh----cCCCCeEEEecCCCCCcccccccccccccc
Q 022463 27 YIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSP-SNFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKIS 100 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~-~~~~~~~v~~~sG~~-~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 100 (297)
...+.-+.+|+.+++++|++ +++ |++++|++ ++..++.++ +++||+|+++..+|++...++... ++
T Consensus 57 ~~~~~~~~~r~~la~~~g~~~~~~----i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~----~~ 128 (398)
T TIGR03392 57 SLTARYELARQQVARFLNAPDAEN----IVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMV----AQ 128 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCe----EEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHH----HH
Confidence 34455567889999999995 543 88888884 554466666 589999999999998875555332 12
Q ss_pred eeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 101 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 101 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
..|.+++.+ +.+ .++.+|++.+++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.+..+.+
T Consensus 129 ~~g~~v~~v--~~~-~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~ 204 (398)
T TIGR03392 129 QTGAKVVKL--PIG-ADLLPDIRQLPELLTP-RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPD 204 (398)
T ss_pred HcCcEEEEE--ecC-CCCCcCHHHHHHHhcc-CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCC
Confidence 223334444 444 4467899999999987 8999988 6777 89999999999999999999999999999888876
Q ss_pred CCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh--ccCCccchhhHHH--HhhhcccCC--CCCCCchHHHHHHH
Q 022463 179 VIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI--NKQGKEVFYDYEE--KINQAVFPG--LQGGPHNHTITGLA 251 (297)
Q Consensus 179 ~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~--~~~g~~~~~~~~~--~~~~~~~~~--~~~t~~~~~~~al~ 251 (297)
+..+ ++|++++|+|| +.||.| |+++.+++...+ ...++.......+ .......+. ..||+++..++++.
T Consensus 205 ~~~~---~~d~~~~s~~K-~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~ 280 (398)
T TIGR03392 205 VQAL---DIDFYAFSGHK-LYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLS 280 (398)
T ss_pred hhhc---CCCEEEEeccc-ccCCCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHH
Confidence 6555 79999999999 568999 999988765322 2222211000000 000001111 17899999999999
Q ss_pred HHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 252 VALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 252 ~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+|++++.+. |+++++++...+.+++.+.|++++.++
T Consensus 281 ~al~~l~~~-g~~~i~~~~~~l~~~l~~~l~~l~g~~ 316 (398)
T TIGR03392 281 AALEWLTDI-DIAAAEAWSVSLADLAEERLAQLPGFR 316 (398)
T ss_pred HHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 999999888 999999999999999999999987654
No 19
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.96 E-value=7.9e-28 Score=212.80 Aligned_cols=247 Identities=19% Similarity=0.241 Sum_probs=185.8
Q ss_pred cccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh-cCCCC----e
Q 022463 3 AVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHD----R 76 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~-~~~gd----~ 76 (297)
+|...+.+-| ++|.++.|+ .+..+.+ +++|+.+|+++|+++.+ |+||+|++ +|-.+++++ ..++| +
T Consensus 62 am~~~~~~~~--~nPh~~~y~-w~~~~~~-E~aR~~VAklInAd~~d----IiFts~ATEs~Nlvl~~v~~~~~~~~~k~ 133 (428)
T KOG1549|consen 62 AMLPYLLEYL--GNPHSRSYG-WKAEDAV-EAAREQVAKLINADPSD----IVFTSGATESNNLVLKGVARFFGDKTKKH 133 (428)
T ss_pred HHHHHHHHhh--cCCCccccc-hhhhHHH-HHHHHHHHHHhCCCCCc----EEEeCCchHHHHHHHHHhhccccccccce
Confidence 4555555555 446566332 2222223 46889999999999976 99999984 554577777 66777 9
Q ss_pred EEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHH
Q 022463 77 IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIR 154 (297)
Q Consensus 77 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~ 154 (297)
|++...+|++...++..++.+++. +..+| ++ +++..|.+.+++.|++ +|++|.+ +.+| .|.+.|++||.
T Consensus 134 iitl~~eH~~v~~s~~~l~~~g~~-----Vt~lp--v~-~~~~~d~~~~~~~i~~-~T~lv~I~~Vnn~~gv~~Pv~EI~ 204 (428)
T KOG1549|consen 134 IITLQTEHPCVLDSCRALQEEGLE-----VTYLP--VE-DSGLVDISKLREAIRS-KTRLVSIMHVNNEIGVLQPVKEIV 204 (428)
T ss_pred EEEecccCcchhHHHHHHHhcCeE-----EEEec--cC-ccccccHHHHHHhcCC-CceEEEEEecccCccccccHHHHH
Confidence 999999999999999887776633 43454 44 6789999999999998 9999999 5656 79999999999
Q ss_pred HHHHhcCCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCc-hhh---ccCCccchhhHHHH
Q 022463 155 KVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV-KEI---NKQGKEVFYDYEEK 229 (297)
Q Consensus 155 ~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~-~~~---~~~g~~~~~~~~~~ 229 (297)
++|+++|+.+++|+||++|.++.|+... ++|++++|+|||+ ||+| |+++++++. +.+ ...|+.+-
T Consensus 205 ~icr~~~v~v~~DaAQavG~i~vDV~el---n~D~~s~s~HK~y-gp~~iGaLYvr~~~~~~~~~p~~~GGgq~------ 274 (428)
T KOG1549|consen 205 KICREEGVQVHVDAAQAVGKIPVDVQEL---NADFLSISAHKIY-GPPGIGALYVRRKRPRLRVEPPLSGGGQE------ 274 (428)
T ss_pred HHhCcCCcEEEeehhhhcCCccccHHHc---Cchheeeeccccc-CCCcceEEEEccCCCcccccCcccCCccc------
Confidence 9999999999999999999999999998 9999999999976 8887 999999732 222 33333211
Q ss_pred hhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 230 INQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 230 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
.....||.+.+...++..|.++..++++ ....+...+...+..++..
T Consensus 275 -----r~~rsGT~~~~~~~~~gsA~e~~~~~~~--~~~~~~~~~~~~ll~~i~~ 321 (428)
T KOG1549|consen 275 -----RGLRSGTVATPLAVGLGSAAEFVNKEMA--YDEAIIKRLSEKLLMGIGQ 321 (428)
T ss_pred -----cccccCCcCchhhhhhHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhh
Confidence 0122778888889999999988876633 3334444466677666654
No 20
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.95 E-value=3.3e-27 Score=218.34 Aligned_cols=243 Identities=17% Similarity=0.214 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHH----hcCCCCeEEEecCCCCCcccccccccccccceeee
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~----~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
+.-+.+|+.+++++|+++.+ +|++++|++ ++..++.+ .+++||+|+++..+|++.+.++.... ...|.
T Consensus 76 ~~~~~~r~~la~~~~~~~~~---~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a----~~~g~ 148 (424)
T PLN02855 76 DAYELARKKVAAFINASTSR---EIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVA----QKTGA 148 (424)
T ss_pred HHHHHHHHHHHHHcCCCCCC---EEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHH----HHcCC
Confidence 33456789999999996322 488888885 44445554 36899999999999998876654331 11233
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
++..+ +.+ .++.+|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.|..++++..+
T Consensus 149 ~v~~v--~~~-~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~ 224 (424)
T PLN02855 149 VLKFV--GLT-PDEVLDVEQLKELLSE-KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTL 224 (424)
T ss_pred EEEEE--ecC-CCCCcCHHHHHHHhcc-CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhc
Confidence 34444 344 3456899999999987 8999998 6777 899999999999999999999999999999888877665
Q ss_pred CCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccchhh-HHHHhhhcccC--CCCCCCchHHHHHHHHHHH
Q 022463 183 PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVFYD-YEEKINQAVFP--GLQGGPHNHTITGLAVALK 255 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~~~-~~~~~~~~~~~--~~~~t~~~~~~~al~~al~ 255 (297)
++|++++|+|| ++||.| |+++++++...+ ...|+..... +.........+ ...||+++..++++.++++
T Consensus 225 ---~~d~~~~s~~K-~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~ 300 (424)
T PLN02855 225 ---GADFLVASSHK-MCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAID 300 (424)
T ss_pred ---CCCEEEeeccc-ccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHH
Confidence 78999999999 678999 999999876322 2223321100 10000000001 1278999999999999999
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
++.+. |+++++++..++.+++.+.|++++.++
T Consensus 301 ~~~~~-g~~~i~~~~~~l~~~l~~~L~~~~g~~ 332 (424)
T PLN02855 301 YLSEI-GMDRIHEYEVELGTYLYEKLSSVPGVR 332 (424)
T ss_pred HHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99988 999999999999999999999887654
No 21
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.95 E-value=2.5e-27 Score=214.05 Aligned_cols=246 Identities=18% Similarity=0.167 Sum_probs=182.0
Q ss_pred CCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhc----CCC-CeEEEecCCCCCccc
Q 022463 16 YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL----KPH-DRIMALDLPHGGHLS 89 (297)
Q Consensus 16 ~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~----~~g-d~Vl~~~~~~~~~~~ 89 (297)
.++.+.+.......++.+.+++++++++|+++++ +++++|++ ++..++.++. ++| +.|+++..+|+++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~----v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~ 103 (353)
T TIGR03235 28 NPSSRTHEFGHNAKKAVERARKQVAEALGADTEE----VIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLE 103 (353)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCe----EEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHH
Confidence 4444333222233455566889999999998764 88888874 6655666664 356 789999999999877
Q ss_pred ccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEe
Q 022463 90 HGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 90 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD 167 (297)
++..+...+ ..+..+ +.+ .++.+|++++++.+++ ++++|++ +++| +|...|+++|.++|+++|+++++|
T Consensus 104 ~~~~~~~~G-----~~v~~v--~~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD 174 (353)
T TIGR03235 104 PIRALERNG-----FTVTYL--PVD-ESGRIDVDELADAIRP-DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVD 174 (353)
T ss_pred HHHHHHhcC-----CEEEEE--ccC-CCCcCCHHHHHHhCCC-CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEE
Confidence 765443333 224334 444 4578999999999986 8899988 6666 899999999999999999999999
Q ss_pred hhhhcccccccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhc-cCCccchhhHHHHhhhcccCCCCCCCchH
Q 022463 168 MAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNH 245 (297)
Q Consensus 168 ~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~t~~~~ 245 (297)
++|+.|..+.++..+ ++|++++|+||| +||.| |+++++++..... ..+. +.. .........+|+++.
T Consensus 175 ~a~~~g~~~~~~~~~---~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~gt~~~~ 243 (353)
T TIGR03235 175 AAQVVGKITVDLSAD---RIDLISCSGHKI-YGPKGIGALVIRKRGKPKAPLKPI-----MFG--GGQERGLRPGTLPVH 243 (353)
T ss_pred chhhcCCcccccccc---CCCEEEeehhhc-CCCCceEEEEEccCcccccccCce-----eeC--CCCcCccccCCCChH
Confidence 999999999988776 899999999998 58998 9999998642110 0000 000 000001126789999
Q ss_pred HHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 246 TITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 246 ~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
.++++.+|++++. . +.++++++.+++.++++++|++ ++++
T Consensus 244 ~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~l~~-~g~~ 283 (353)
T TIGR03235 244 LIVGMGEAAEIAR-R-NAQAWEVKLRAMRNQLRDALQT-LGVK 283 (353)
T ss_pred HHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHHHhcc-CCeE
Confidence 9999999999875 5 8999999999999999999988 5543
No 22
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.95 E-value=2.9e-27 Score=217.24 Aligned_cols=230 Identities=17% Similarity=0.226 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh----cCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.+..+.+++.+++++|+++++ +++++|++ ++..++.++ .++||+|+++..+|+++..++..+...+
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~----v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g----- 116 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSRE----IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREG----- 116 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCe----EEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcC-----
Confidence 455566779999999998764 88887774 655455554 3689999999999999877665332223
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+..+ +.+ .++.+|++.+++.+++ +++++++ +++| +|...|+++|.++|+++|+++++|++|++|..+.++..
T Consensus 117 ~~v~~v--~~~-~~~~~d~~~l~~~l~~-~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~ 192 (402)
T TIGR02006 117 FEVTYL--PPK-SNGLIDLEELKAAIRD-DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNE 192 (402)
T ss_pred CEEEEE--ccC-CCCcCCHHHHHHhcCC-CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccc
Confidence 224344 444 5678999999999987 8888888 6666 89999999999999999999999999999999888776
Q ss_pred CCCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
+ ++|++++|+||+ .||.| |+++++++...+ ...|+. .. .....||++...++++..+++++
T Consensus 193 ~---~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~~~~~g~~----~~-------~~~~~gt~~~~~~~al~~al~~~ 257 (402)
T TIGR02006 193 L---KVDLMSISGHKI-YGPKGIGALYVRRKPRVRLEALIHGGG----HE-------RGMRSGTLPTHQIVGMGEAFRIA 257 (402)
T ss_pred c---CCCEEEEehhhh-cCCCceEEEEEccCCCCCCCceecCCC----cc-------CCccCCCccHHHHHHHHHHHHHH
Confidence 6 899999999995 58998 999998764211 111111 00 00126799999999999999987
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
. . +++.+.++.+.+.+++.+.|++++.++
T Consensus 258 ~-~-~~~~~~~~~~~l~~~l~~~l~~~~~v~ 286 (402)
T TIGR02006 258 K-E-EMAQDTAHVLALRDRLLNGIKSIEEVY 286 (402)
T ss_pred H-H-hHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 6 4 789999999999999999999888754
No 23
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.95 E-value=1.3e-26 Score=212.50 Aligned_cols=245 Identities=15% Similarity=0.144 Sum_probs=180.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
+...++.+.+++++++++|++.++ ..++.++|+.++..++.+++++||+|+++++.|.+.. +... ++..|..
T Consensus 38 ~~~~~~~~~~~~~l~~~~g~~~~~--~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~----~~~~g~~ 109 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFKTKSGT--PFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQ----MQRLNFD 109 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHH----HHHcCCc
Confidence 455677788889999999997643 2344455556777778888999999999987776542 2111 1222333
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-cCCC-CCCcccHHHHHHH--HHhcCCEEEEehhhhccccccc
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA-GASA-YARLYDYERIRKV--CNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~-~~~~-~G~~~~~~~i~~l--a~~~g~~livD~a~~~g~~~~~ 178 (297)
++.++ .+ .+..+|++++++.+++ .++++|++ +.+| +|.+.|+++|.++ |+++|+++++|++|+.|..+++
T Consensus 110 v~~v~--~~-~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id 186 (401)
T PLN02409 110 VDVVE--SP-WGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFR 186 (401)
T ss_pred eEEEE--CC-CCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccc
Confidence 44454 33 2345899999999986 36899988 5554 8999999999999 9999999999999999999988
Q ss_pred CCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccC--CccchhhHHHHhhhcccCCC-CCCCchHHHHHHHHHH
Q 022463 179 VIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ--GKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVAL 254 (297)
Q Consensus 179 ~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~al~~al 254 (297)
+..+ ++|++++|+||||++|.| |+++.+++...+... ......++............ .+|+++..++++.+|+
T Consensus 187 ~~~~---~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al 263 (401)
T PLN02409 187 MDEW---GVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAAL 263 (401)
T ss_pred cccc---CccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Confidence 8777 899999999999999999 999998875322111 00000011111111101111 5689999999999999
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
+++.+. |+++++++.+.+.+++.+.|+++.
T Consensus 264 ~~~~~~-G~e~i~~~~~~l~~~l~~~L~~~g 293 (401)
T PLN02409 264 DLIFEE-GLENVIARHARLGEATRLAVEAWG 293 (401)
T ss_pred HHHHHh-hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999988 999999999999999999998763
No 24
>PRK02769 histidine decarboxylase; Provisional
Probab=99.95 E-value=2.9e-26 Score=207.61 Aligned_cols=236 Identities=18% Similarity=0.123 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHh--cCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
...++|+++++++++++|+++++. ...+|||+ .+|+.++.+. ..++++|++++.+|.|+..++..++..
T Consensus 62 ~~~~~e~~~~~~~a~l~g~~~~~~--~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~------ 133 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKIPFNES--WGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIK------ 133 (380)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCC--CEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCC------
Confidence 467899999999999999976541 13455554 6776554433 467899999999999997766543221
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEE-cCCC-CCCcccHHHHHHHHHhcC---CEEEEehhhhccccc
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA-GASA-YARLYDYERIRKVCNKQK---AIMLADMAHISGLVA 176 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g---~~livD~a~~~g~~~ 176 (297)
...+ +.+ .++.+|+++|++.+++. +|.+|++ +.++ +|.+.|+++|.++|+++| +++++|+||+.+.+|
T Consensus 134 --~~~V--~~~-~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p 208 (380)
T PRK02769 134 --SRVI--TSL-PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILP 208 (380)
T ss_pred --Ccee--ccC-CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeec
Confidence 2233 344 47889999999999873 3888877 4555 899999999999999998 699999999999887
Q ss_pred ccCCCCCCC---CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHH
Q 022463 177 AGVIPSPFE---YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAV 252 (297)
Q Consensus 177 ~~~~~~~~~---~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~ 252 (297)
+.....+++ ++|++++|+|||+++|.| |+++++++...+.... . .+ +.. ..+...||++....+++++
T Consensus 209 ~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~-~---~y---l~~-~d~t~~GSR~g~~~l~lw~ 280 (380)
T PRK02769 209 FVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD-V---DY---IGS-RDQTISGSRNGHTALLLWA 280 (380)
T ss_pred ccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC-c---cc---cCC-CCCCccCCCCcHHHHHHHH
Confidence 532221221 799999999999988999 9999998532111100 0 11 111 1123478899889999999
Q ss_pred HHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 253 ALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 253 al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+|+.+... |++++.+++.++++++.++|++.
T Consensus 281 aL~~lg~~-G~~~~~~~~~~la~~l~~~L~~~ 311 (380)
T PRK02769 281 AIRSLGSK-GLRQRVQHCLDMAQYAVDRLQAN 311 (380)
T ss_pred HHHHHCHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999988 99999999999999999999774
No 25
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.95 E-value=9.1e-27 Score=212.36 Aligned_cols=232 Identities=16% Similarity=0.227 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhc---CCCCeEEEecCCCCCccccccccccccccee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALL---KPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~---~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
...++.+++|+++++++|+++++ +++++|+ .++..++.+++ ++||+|+++..+|+++..++..+...++
T Consensus 39 ~~~~~~~~~r~~la~~~g~~~~~----i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~--- 111 (379)
T TIGR03402 39 EVGKAVEEAREQVAKLLGAEPDE----IIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGY--- 111 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCe----EEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCC---
Confidence 34555667889999999998764 7787776 46555666553 5678999999999988776654433333
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
.+..+ +.+ .++.+|++++++.+++ +++++++ +.+| +|.+.|+++|.++|+++|+++++|++|+.|..+.++.
T Consensus 112 --~v~~v--~~~-~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~ 185 (379)
T TIGR03402 112 --KVTYL--PVD-EEGRLDLEELRAAITD-DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLK 185 (379)
T ss_pred --EEEEE--ccC-CCCcCCHHHHHHhcCC-CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcc
Confidence 24344 444 4578999999999987 8998888 6666 7999999999999999999999999999999998887
Q ss_pred CCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh-ccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 181 PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI-NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
.+ ++|++++|+|| ++||.| |+++++++...+ ...|+.. . .....||++++.+.++.+|++++.
T Consensus 186 ~~---~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~~p~~~g~~~--------~---~~~~~gt~~~~~~~~l~~al~~~~ 250 (379)
T TIGR03402 186 EM---NIDMLSLSGHK-LHGPKGVGALYIRKGTRFRPLLRGGHQ--------E---RGRRAGTENVPGIVGLGKAAELAT 250 (379)
T ss_pred cC---CCCEEEEcHHH-cCCCCceEEEEECCCCCCCCcccCCcc--------C---CCcCCCCccHHHHHHHHHHHHHHH
Confidence 76 89999999999 789999 999998764322 1111110 0 011268999999999999999886
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccC-CCCcc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNN-SENIE 288 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~-~~~~~ 288 (297)
+ .++.++++.+.+.+++.++|++ ++.++
T Consensus 251 ~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 279 (379)
T TIGR03402 251 E--HLEEENTRVRALRDRLEAGLLARIPDAR 279 (379)
T ss_pred H--hHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 4 5788899999999999999985 77654
No 26
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.95 E-value=3.5e-26 Score=207.99 Aligned_cols=247 Identities=17% Similarity=0.191 Sum_probs=182.1
Q ss_pred hhHHHHHHHHHHHHHHHcCCC-CCCCcceEEecCCh-HHHHHHHHHhcC---CCCeEEEecCCCCCcccccccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGS-PSNFQVYTALLK---PHDRIMALDLPHGGHLSHGYQTDTKKIS 100 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~-~~~~~~~v~~~sG~-~~~~~~~~~~~~---~gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 100 (297)
+...+..+++++.+++++|++ ++ .+++++|+ .++..++.++.. +||+|+++..+|++...++.... +
T Consensus 39 ~~~~~~~~~~~~~la~~~~~~~~~----~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~----~ 110 (373)
T cd06453 39 ARATDAYEAAREKVARFINAPSPD----EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLA----E 110 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC----eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHH----h
Confidence 444555666779999999998 54 37777777 465557778866 89999999988888755443221 1
Q ss_pred eeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 101 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 101 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
..|..++.++ .+ .++.+|++++++.+++ ++++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.|..+.+
T Consensus 111 ~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~ 186 (373)
T cd06453 111 RTGAKLKVVP--VD-DDGQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVD 186 (373)
T ss_pred hcCcEEEEee--cC-CCCCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeee
Confidence 2233344454 44 5678999999999987 8999988 6666 79999999999999999999999999999988776
Q ss_pred CCCCCCCCccEEEecCCccCCCCCceEEEEecCchh--h-ccCCccchhhH-HHHhhhcccC--CCCCCCchHHHHHHHH
Q 022463 179 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKE--I-NKQGKEVFYDY-EEKINQAVFP--GLQGGPHNHTITGLAV 252 (297)
Q Consensus 179 ~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~--~-~~~g~~~~~~~-~~~~~~~~~~--~~~~t~~~~~~~al~~ 252 (297)
+... ++|++++|+||++++++.|+++++++... + ...|+...... .+.......+ ...++++...+.++.+
T Consensus 187 ~~~~---~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~ 263 (373)
T cd06453 187 VQDL---GCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGA 263 (373)
T ss_pred cccc---CCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHH
Confidence 6555 79999999999987733399999886532 2 22222211000 0000000011 1157889999999999
Q ss_pred HHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 253 ALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 253 al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+++.+.+. |++++.++.+.+++++.+.|++++.++
T Consensus 264 al~~l~~~-g~~~~~~~~~~~~~~l~~~l~~~~~~~ 298 (373)
T cd06453 264 AIDYLEKI-GMEAIAAHEHELTAYALERLSEIPGVR 298 (373)
T ss_pred HHHHHHHc-CHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 99999988 999999999999999999999987655
No 27
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.95 E-value=3.3e-26 Score=210.27 Aligned_cols=242 Identities=19% Similarity=0.211 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCCcceEEecCChH-HHHHHHHHh----cCCCCeEEEecCCCCCccccccccccccccee
Q 022463 29 DMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSP-SNFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~-~~~~~~~v~~~sG~~-~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
.+.-+++|+.+++++|++ +++ +++++|++ ++..++.++ +++||+|+++..+|++...++.... ...
T Consensus 61 ~~~~~~~r~~ia~~~~~~~~~~----v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~----~~~ 132 (403)
T TIGR01979 61 TEAYEAVREKVAKFINAASDEE----IVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLA----ERT 132 (403)
T ss_pred HHHHHHHHHHHHHHhCcCCCCe----EEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHH----Hhc
Confidence 334446779999999998 443 88888885 444355553 5899999999999998765544321 122
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
|..++.+ +.+ .++.+|++++++.+++ +|++|++ +++| +|...|+++|.++|+++|+++++|++|+.|..+.++.
T Consensus 133 g~~~~~v--~~~-~~~~~~~~~l~~~i~~-~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~ 208 (403)
T TIGR01979 133 GATLKFI--PLD-DDGTLDLDDLEKLLTE-KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQ 208 (403)
T ss_pred CcEEEEE--ecC-CCCCCCHHHHHHHhcc-CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCcc
Confidence 3334444 444 5678999999999987 8999988 6666 7999999999999999999999999999998887776
Q ss_pred CCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccchhhHHHHhhhcc--cCC--CCCCCchHHHHHHHH
Q 022463 181 PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVFYDYEEKINQAV--FPG--LQGGPHNHTITGLAV 252 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~~~~~~~~~~~~--~~~--~~~t~~~~~~~al~~ 252 (297)
.. ++|++++|+||++ ||.| |+++.+++...+ ...|+... +........+ .+. ..||++...++++.+
T Consensus 209 ~~---~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 283 (403)
T TIGR01979 209 AL---DCDFYVFSGHKMY-GPTGIGVLYGKEELLEQMPPFLGGGEMI-AEVSFEETTYNEAPHKFEAGTPNIAGVIGLGA 283 (403)
T ss_pred cc---CCCEEEEeccccc-CCCCceEEEEchHHHhcCCCeecCCCce-eecccCccccCCChhhcCCCCccHHHHHHHHH
Confidence 55 7999999999965 7999 999998764222 22222110 1000000000 011 157899999999999
Q ss_pred HHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 253 ALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 253 al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+++++.+. |+++++++...+.+++.+.|++++.++
T Consensus 284 al~~~~~~-g~~~~~~~~~~l~~~l~~~l~~~~g~~ 318 (403)
T TIGR01979 284 AIDYLEAI-GLENIEAHEHELTAYALERLGEIPGLR 318 (403)
T ss_pred HHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999887 999999999999999999999887654
No 28
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.94 E-value=3e-26 Score=225.80 Aligned_cols=251 Identities=15% Similarity=0.097 Sum_probs=178.6
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh-cCCCCeEEEecCCCCCccccccccccccccee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
.....++-+.+|+.+++++|+++++ ..|+||+|++ ++..++.++ +++||+|+++..+|++...++....+.+++
T Consensus 73 s~~~~~~~e~aR~~ia~~lga~~~~--~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~-- 148 (805)
T PLN02724 73 SMRSSDTIESARQQVLEYFNAPPSD--YACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAA-- 148 (805)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccc--eEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCe--
Confidence 3445556668999999999997654 1489998885 433366666 789999999999999987554333333433
Q ss_pred eeeeEeeecccCC-----CCCcCCH--HHHHHHhh---------hcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc----
Q 022463 103 SIFFETMPYRLNE-----STGYIDY--DQLEKSAT---------LFRPKLIVA-GASA-YARLYDYERIRKVCNKQ---- 160 (297)
Q Consensus 103 g~~~~~v~~~~~~-----~~~~~d~--~~l~~~l~---------~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~---- 160 (297)
+..++++.+. ..+.+++ +.+++.++ ..++++|.+ +.+| +|.+.|++.|..+++..
T Consensus 149 ---v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~ 225 (805)
T PLN02724 149 ---AIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNF 225 (805)
T ss_pred ---EEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhccccc
Confidence 4444433111 1233433 56666542 125678888 6777 89999999876655542
Q ss_pred ----CCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCch--hh-ccCCc-cchhhHHH--H
Q 022463 161 ----KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK--EI-NKQGK-EVFYDYEE--K 229 (297)
Q Consensus 161 ----g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~--~~-~~~g~-~~~~~~~~--~ 229 (297)
++++++|+||++|..++++..+ ++|++++|+|||+++|.| |+++++++.. +. ...|+ +....... .
T Consensus 226 ~~~g~~~v~vDaaQ~~g~~piDv~~~---~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~ 302 (805)
T PLN02724 226 SKSGRWMVLLDAAKGCGTSPPDLSRY---PADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDF 302 (805)
T ss_pred ccCcceEEEeehhhhcCCCCCChhhc---CCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccce
Confidence 3689999999999999999887 899999999999988999 9999998753 22 23333 32110000 0
Q ss_pred h-hhcccCCC--CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 230 I-NQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 230 ~-~~~~~~~~--~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
. .....+.+ .||+++..++++.+|++++.+. |++++.++...|.+++.++|+++++
T Consensus 303 ~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~i-g~~~I~~~~~~L~~~l~~~L~~l~~ 361 (805)
T PLN02724 303 VKRRERVEQRFEDGTISFLSIAALRHGFKLLNRL-TISAIAMHTWALTHYVANSLRNLKH 361 (805)
T ss_pred eeccccHHHHhcCCCcchhHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHhccC
Confidence 0 00001111 7899999999999999999988 9999999999999999999998873
No 29
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.94 E-value=1.1e-25 Score=206.41 Aligned_cols=242 Identities=18% Similarity=0.228 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh---cCCCCeEEEecCCCCCcccccccccccccce
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISA 101 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~---~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 101 (297)
....++.+..++.+++++|+++++ +++++|++ ++..++.++ ++|||+|+++..+|.+...++... ++.
T Consensus 56 ~~~~~~~~~l~~~ia~~~~~~~~~----v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~----~~~ 127 (397)
T TIGR01976 56 RRADQVVDDAREAVADLLNADPPE----VVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQA----AER 127 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCe----EEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHH----HHh
Confidence 344555667779999999998654 88888875 433344443 689999999999998876554322 122
Q ss_pred eeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 102 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
.|..+..+ +.+++++.+|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.|..+.++
T Consensus 128 ~g~~~~~~--~~~~~~~~~~~~~l~~~i~~-~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~ 204 (397)
T TIGR01976 128 AGAKVKWA--RVDEATGELHPDDLASLLSP-RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDV 204 (397)
T ss_pred cCCEEEEE--eccccCCCcCHHHHHHhcCC-CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCH
Confidence 33334444 44433578999999999987 8999988 6767 899999999999999999999999999988777666
Q ss_pred CCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 180 IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 180 ~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
..+ ++|++++|+|||+ ||+.|+++++++....+..-.. .+. ..........||+++..++++.+|++++.+
T Consensus 205 ~~~---~~d~~~~s~~K~~-g~~~G~l~~~~~~~~~l~~~~~---~~~--~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 275 (397)
T TIGR01976 205 QAT---GADFLTCSAYKFF-GPHMGILWGRPELLMNLPPYKL---TFS--YDTGPERFELGTPQYELLAGVVAAVDYLAG 275 (397)
T ss_pred HHc---CCCEEEEechhhc-CCceEEEEEcHHHHhhCCCccc---cCc--cCCCcchhcCCCCCHHHHHHHHHHHHHHHH
Confidence 555 7999999999987 6777999998854211100000 000 000000011689999999999999999987
Q ss_pred hcC--------------hhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 260 LIT--------------FSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 260 ~~g--------------~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
. | +++++++..++.+++++.|++++.++
T Consensus 276 ~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~ 317 (397)
T TIGR01976 276 L-GESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVT 317 (397)
T ss_pred h-CcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 7 5 67788899999999999999887543
No 30
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.94 E-value=2.8e-26 Score=210.89 Aligned_cols=232 Identities=13% Similarity=0.078 Sum_probs=166.6
Q ss_pred HHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCC---CeEEEecCCCCCccccccc-ccccccceeeeeeEeeecccCC
Q 022463 41 EAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH---DRIMALDLPHGGHLSHGYQ-TDTKKISAVSIFFETMPYRLNE 115 (297)
Q Consensus 41 ~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~g---d~Vl~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~ 115 (297)
+++|+++++ |++++|++ ++..++.++++++ +.|+++..+|++...++.. ....++++. ...+.++.+
T Consensus 80 ~l~g~~~~~----v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~---~~~~~~~~~- 151 (406)
T TIGR01814 80 RLVGAKEDE----VVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVE---ESMVQIEPR- 151 (406)
T ss_pred cccCCCCCc----EEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcc---cceEEeccC-
Confidence 899998865 88888875 4444677776664 3688878899987665542 222233321 011223333
Q ss_pred CCCcCCHHHHHHHhhh--cCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCccEEE
Q 022463 116 STGYIDYDQLEKSATL--FRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 191 (297)
Q Consensus 116 ~~~~~d~~~l~~~l~~--~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~ 191 (297)
.++.+|++++++.++. .+|++|++ +.++ +|...|+++|.++|+++|+++++|++|++|..++++..+ ++|+++
T Consensus 152 ~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~---gvD~~~ 228 (406)
T TIGR01814 152 EEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDW---GVDFAC 228 (406)
T ss_pred CCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccC---CCCEEE
Confidence 3567899999988852 27888888 5555 799999999999999999999999999999999998776 899999
Q ss_pred ecCCccCCCCCceEEEEecCch--hh-ccCCccchhh---HHHHhhhcccCC--CCCCCchHHHHHHHHHHHHHhhhcCh
Q 022463 192 TTTHKSLRGPRGAMIFFRKGVK--EI-NKQGKEVFYD---YEEKINQAVFPG--LQGGPHNHTITGLAVALKQVCTLITF 263 (297)
Q Consensus 192 ~s~~K~l~gp~gG~i~~~~~~~--~~-~~~g~~~~~~---~~~~~~~~~~~~--~~~t~~~~~~~al~~al~~~~~~~g~ 263 (297)
+|+||||+||+||+++++++.. .. ...||..... +.........+. ..||+++..++++.+|++++.+. |+
T Consensus 229 ~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~-g~ 307 (406)
T TIGR01814 229 WCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQA-GM 307 (406)
T ss_pred EcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhc-CH
Confidence 9999999877786666655432 22 2234332110 000000001111 16899999999999999999988 99
Q ss_pred hhHHHHhhhhHHHHHhhccCC
Q 022463 264 SHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 264 ~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++++++.+.+.+++.+.|++.
T Consensus 308 ~~i~~~~~~l~~~l~~~l~~~ 328 (406)
T TIGR01814 308 EALRKKSLLLTDYLEELIKAR 328 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998775
No 31
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.8e-25 Score=198.44 Aligned_cols=241 Identities=15% Similarity=0.121 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
..+-+.+++.+.++|+++..+ +.++.+||+.++.+++.++++|||+||+..+. .++..+. .-++..|..+..
T Consensus 37 ~~~~~~~~~~L~~v~~t~~~~--~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG---~FG~R~~---~ia~~~g~~v~~ 108 (383)
T COG0075 37 VGIMKEVLEKLRKVFGTENGD--VVLLSGSGTLAMEAAVASLVEPGDKVLVVVNG---KFGERFA---EIAERYGAEVVV 108 (383)
T ss_pred HHHHHHHHHHHHHHhcCCCCc--EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCC---hHHHHHH---HHHHHhCCceEE
Confidence 444556779999999998433 34555777789999999999999999998743 2222211 112233333545
Q ss_pred eecccCCCCCcCCHHHHHHHhhhc-CCcEEEE--cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC
Q 022463 109 MPYRLNESTGYIDYDQLEKSATLF-RPKLIVA--GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE 185 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~~-~~~~v~~--~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~ 185 (297)
+..+ ....+|+++++++|+++ +.++|.+ +.+++|...|+++|+++|++||+++|||+..+.|..++++..|
T Consensus 109 ~~~~---wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~w--- 182 (383)
T COG0075 109 LEVE---WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEW--- 182 (383)
T ss_pred EeCC---CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhc---
Confidence 5433 44689999999999952 3567777 4888999999999999999999999999999999999999999
Q ss_pred CccEEEecCCccCCCCCc-eEEEEecCchhhccCCcc-chh-hH---HHHhhhcccCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 186 YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKE-VFY-DY---EEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 186 ~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~-~~~-~~---~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
++|+++.+++|+|.+|+| |++.++++...+...... +++ ++ .+.++.. ...+.||++..++++..||+.+++
T Consensus 183 giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~--~~~p~Tppv~~i~aL~~al~~i~~ 260 (383)
T COG0075 183 GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK--GSTPYTPPVNLIYALREALDLILE 260 (383)
T ss_pred CccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999986433221111 111 22 2222221 233789999999999999999999
Q ss_pred hcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 260 LITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+ |+++++++++.+.+++++++..+..
T Consensus 261 E-Gle~r~~RH~~~~~a~r~~~~alGl 286 (383)
T COG0075 261 E-GLEARIARHRRLAEALRAGLEALGL 286 (383)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9 9999999999999999999987663
No 32
>PRK14012 cysteine desulfurase; Provisional
Probab=99.94 E-value=6.4e-26 Score=208.46 Aligned_cols=229 Identities=18% Similarity=0.227 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHh----cCCCCeEEEecCCCCCcccccccccccccceeee
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
+.-+..++.+++++|+++++ +++++|+ .++..++.++ .++||+|+++..+|+++..++..+...+ .
T Consensus 49 ~~~~~~r~~ia~~~g~~~~~----v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g-----~ 119 (404)
T PRK14012 49 EAVDIARNQIADLIGADPRE----IVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREG-----F 119 (404)
T ss_pred HHHHHHHHHHHHHcCcCcCe----EEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCC-----C
Confidence 34445669999999998764 7777666 4554455554 4789999999999998877665432223 2
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
.+..+ +.+ .++.+|++++++++++ ++++|++ +.+| +|.+.|+++|.++|+++|+++|+|++|++|..+.++...
T Consensus 120 ~~~~v--~~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~ 195 (404)
T PRK14012 120 EVTYL--DPQ-SNGIIDLEKLEAAMRD-DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKL 195 (404)
T ss_pred EEEEE--ccC-CCCcCCHHHHHHhcCC-CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccC
Confidence 23334 455 5678999999999987 8998888 6666 899999999999999999999999999999998877665
Q ss_pred CCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 183 PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
++|++++|+|| +.||.| |+++++++...+ ...|+.. . .....++++...+.++.+|++.+.
T Consensus 196 ---~~D~~~~s~~K-~~gp~g~G~l~~~~~~~~~~~~~~~g~~~----~-------~~~~~gt~~~~~~~~l~~al~~~~ 260 (404)
T PRK14012 196 ---KVDLMSFSAHK-IYGPKGIGALYVRRKPRVRLEAQMHGGGH----E-------RGMRSGTLPTHQIVGMGEAARIAK 260 (404)
T ss_pred ---CCCEEEEehhh-ccCCCceEEEEEecCCCCCCCceecCCCc----c-------CCccCCCcCHHHHHHHHHHHHHHH
Confidence 79999999999 558888 999998764222 1112110 0 001256788888999999998775
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
. +.+.+.++.+.+.+++.+.|++++.+.
T Consensus 261 -~-~~~~~~~~~~~l~~~l~~~L~~~~~i~ 288 (404)
T PRK14012 261 -E-EMATENERIRALRDRLWNGIKDIEEVY 288 (404)
T ss_pred -h-hHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 3 577789999999999999999887654
No 33
>PLN03032 serine decarboxylase; Provisional
Probab=99.94 E-value=5.4e-25 Score=198.09 Aligned_cols=260 Identities=14% Similarity=0.073 Sum_probs=184.4
Q ss_pred ccccccccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--CCCCeEEE
Q 022463 2 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--KPHDRIMA 79 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--~~gd~Vl~ 79 (297)
++|...+.|.+ |.|.+. +.......++|+++++++++++|+++++++ .+++++||.+|+.++.+.. .++.+|++
T Consensus 41 ~~~~~~~~~~~--gnP~s~-~~~g~~a~~~e~~v~~~ia~llg~~~~~~~-G~fTsGGTEaNl~al~~ar~~~~~~~vi~ 116 (374)
T PLN03032 41 SQLMKYSINNL--GDPFIE-SNYGVHSRQFEVGVLDWFARLWELEKDEYW-GYITTCGTEGNLHGILVGREVFPDGILYA 116 (374)
T ss_pred HHHHHhcccCC--CCCccc-CCCCccHHHHHHHHHHHHHHHhCCCCccCC-EEEeCchHHHHHHHHHHHHHhCCCcEEEe
Confidence 34445555554 445553 334456789999999999999999876520 2444444568876665442 35568999
Q ss_pred ecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEE-cCC-CCCCcccHHHHHH
Q 022463 80 LDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA-GAS-AYARLYDYERIRK 155 (297)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~-~~~-~~G~~~~~~~i~~ 155 (297)
+..+|.|.......++ ..++.+ +.+ .++.+|+++|++.|++. +|.+|++ ..+ .+|.+.|+++|.+
T Consensus 117 s~~~H~Sv~kaa~~lg--------~~~~~V--~~d-~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~ 185 (374)
T PLN03032 117 SRESHYSVFKAARMYR--------MEAVKV--PTL-PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILR 185 (374)
T ss_pred CCCceeHHHHHHHHcC--------CCCeEe--eeC-CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHH
Confidence 9999999976554332 223344 445 67899999999999863 3667766 344 4899999999999
Q ss_pred HHHhcC-----CEEEEehhhhcccccccCCCCCC---CCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhH
Q 022463 156 VCNKQK-----AIMLADMAHISGLVAAGVIPSPF---EYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDY 226 (297)
Q Consensus 156 la~~~g-----~~livD~a~~~g~~~~~~~~~~~---~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~ 226 (297)
+|+++| +++++|+|++.+.+++......+ .++|.+++|+||+++.|.| |+++++++....+.. .
T Consensus 186 i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~-------~ 258 (374)
T PLN03032 186 ILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQ-------N 258 (374)
T ss_pred HHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhcc-------C
Confidence 999997 48999999999888763221111 2699999999998877999 999999853111100 0
Q ss_pred HHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 227 EEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 227 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
.+++... -+...|+.+....++++++|+.+... |+.++.+++.++++++.+.|++.+
T Consensus 259 ~~Yl~~~-d~ti~gSR~g~~~l~~w~~l~~~G~~-g~~~~~~~~~~~a~~l~~~l~~~~ 315 (374)
T PLN03032 259 VEYLNSR-DATIMGSRNGHAPLYLWYTLRRKGYR-GIKRDVQHCMRNAHYLKDRLTEAG 315 (374)
T ss_pred CcccCCC-CCcccCCCchHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0111111 12347777777788899999999988 999999999999999999998853
No 34
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.93 E-value=4.9e-25 Score=201.41 Aligned_cols=224 Identities=16% Similarity=0.131 Sum_probs=160.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
+...++| +.+++++|+++ +.+++|+ .++.+++.+++++||+|+++..+|.+.+.. +...|.
T Consensus 63 ~~~~~l~----~~lA~~~g~~~------~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~--------~~~~G~ 124 (387)
T PRK09331 63 PPIADFH----EDLAEFLGMDE------ARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVA--------AERAGL 124 (387)
T ss_pred hHHHHHH----HHHHHHhCCCc------EEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHH--------HHHcCC
Confidence 3455555 99999999975 4445555 688878899999999999998888877542 223344
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhc------CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccc
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLF------RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVA 176 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~ 176 (297)
.+..++.+.+ .++.+|++++++.+++. ++++|++ ++++ +|...|+++|.++|+++|+++++|++|+.|..+
T Consensus 125 ~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~ 203 (387)
T PRK09331 125 NVREVPKTGY-PEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMP 203 (387)
T ss_pred EEEEEeCccC-cCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcC
Confidence 4444543223 46789999999999752 6888888 6666 899999999999999999999999999999888
Q ss_pred ccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcc-------cCCCCCCCchHHHH
Q 022463 177 AGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAV-------FPGLQGGPHNHTIT 248 (297)
Q Consensus 177 ~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~t~~~~~~~ 248 (297)
.+...+ ++|++++|+||++++|.| |+++++++. .+.+.... .....++.+....+
T Consensus 204 ~~~~~~---g~D~~~~s~~K~l~~~~~~G~l~~~~~~--------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (387)
T PRK09331 204 VDGKKL---GADFIVGSGHKSMAASAPSGVLATTEEY--------------ADKVFRTSRKFGVKEVELLGCTLRGAPLV 266 (387)
T ss_pred CCHHHc---CCCEEEeeCcccccCCCCEEEEEECHHH--------------HhhcccccCCCcccceeeeceecCchHHH
Confidence 776665 899999999999998877 999988753 22111110 00012233333455
Q ss_pred HHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 249 GLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 249 al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
++.++++.+.+. ....++....++++.+.|+++++++
T Consensus 267 ~~~aal~~~~~~---~~~~~~~~~~~~~l~~~L~~l~g~~ 303 (387)
T PRK09331 267 TLMASFPHVVER---VKRWDEEVKKARWFVDELEKIEGFK 303 (387)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 556667666543 2345556778889999999887643
No 35
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=5.6e-25 Score=195.56 Aligned_cols=228 Identities=15% Similarity=0.142 Sum_probs=170.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh-cCCCCeEEEecCCCCCccccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKI 99 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~ 99 (297)
..+..+...++| +++++++|+++. +.++|||.++..+++++ +.|||+|+++..++.++..+.
T Consensus 29 ~i~~G~~v~~FE----~~~ae~~G~k~a-----va~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i-------- 91 (374)
T COG0399 29 WLTGGPFVRRFE----QAFAEYLGVKYA-----VAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAV-------- 91 (374)
T ss_pred CeecChHHHHHH----HHHHHHhCCCeE-----EEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHH--------
Confidence 334468889999 899999999984 99999998888788866 899999999998777765433
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
...| .+++++++|++++.+|++.++++|++ +||+|+. .+-+|...|+++|.++|++||++||+|+||+.|...-+-
T Consensus 92 ~~~G--a~PVFvDid~~T~nid~~~ie~aIt~-~tKAIip-Vhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk 167 (374)
T COG0399 92 LLVG--AKPVFVDIDPDTLNIDPDLIEAAITP-RTKAIIP-VHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGK 167 (374)
T ss_pred HHcC--CeEEEEecCCcccCCCHHHHHHHccc-CCeEEEE-ehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCc
Confidence 3344 45688899999999999999999998 8999997 335899999999999999999999999999999998877
Q ss_pred CCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhccc-------------CCCCCCCchHH
Q 022463 180 IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVF-------------PGLQGGPHNHT 246 (297)
Q Consensus 180 ~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------~~~~~t~~~~~ 246 (297)
...++..+-.++|-..|.|....||+++++++. +.+++..... .....+....
T Consensus 168 ~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~e-------------la~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~- 233 (374)
T COG0399 168 KVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEE-------------LAEKARSLRNHGLSRDAVFKYLHEELGYNYRLT- 233 (374)
T ss_pred ccccccceEEEEecCCCCccccCceEEEeCCHH-------------HHHHHHHHHHhCcCCCccccceeeecccccCHH-
Confidence 665543333444444599988888999999863 2222111110 0011111222
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
-+.+|+-...-. .+++..++++++++++.+.|++++.
T Consensus 234 --~iqAAigl~QL~-~l~~~~~~R~~~a~~Y~~~l~~~~~ 270 (374)
T COG0399 234 --EIQAAIGLAQLE-RLDEINERRREIAQIYAEALKGLPG 270 (374)
T ss_pred --HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 223333333323 6788999999999999999998875
No 36
>PRK02948 cysteine desulfurase; Provisional
Probab=99.93 E-value=3.7e-25 Score=201.91 Aligned_cols=230 Identities=16% Similarity=0.176 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhc----CCCCeEEEecCCCCCcccccccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALL----KPHDRIMALDLPHGGHLSHGYQTDTKKIS 100 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 100 (297)
....++.+.+|+.+++++|+++++ |++++|+ .++..++.+++ ++||.|+++..+|+++...+......+
T Consensus 39 ~~~~~~~~~~r~~la~~~g~~~~~----i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g-- 112 (381)
T PRK02948 39 GTASSLLQVCRKTFAEMIGGEEQG----IYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQG-- 112 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCe----EEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCC--
Confidence 444566677889999999998764 8888886 56665666664 679999999999999876655433333
Q ss_pred eeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 101 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 101 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
..+..+ +.+ +++.+|++++++.+++ ++++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.|..+.+
T Consensus 113 ---~~v~~v--~~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~ 185 (381)
T PRK02948 113 ---YTVTEI--PVD-KSGLIRLVDLERAITP-DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPID 185 (381)
T ss_pred ---CEEEEE--eeC-CCCCCCHHHHHHhcCC-CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccC
Confidence 334444 444 4578999999999986 8888888 6666 89999999999999999999999999999988887
Q ss_pred CCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh-ccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 022463 179 VIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI-NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 256 (297)
Q Consensus 179 ~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~ 256 (297)
+..+ ++|++++|+||+ .||.| |+++.+++.... ...+.. .......+|++.+.++++.+|++.
T Consensus 186 ~~~~---~~d~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~t~~~~~~~a~~~al~~ 250 (381)
T PRK02948 186 VFEM---GIDSLSVSAHKI-YGPKGVGAVYINPQVRWKPVFPGTT-----------HEKGFRPGTVNVPGIAAFLTAAEN 250 (381)
T ss_pred cccC---CCCEEEecHHhc-CCCCcEEEEEEcCCCCCCCcccCCC-----------CCCCcCCCCccHHHHHHHHHHHHH
Confidence 7666 899999999996 57999 999998864211 100000 001112678999999999999998
Q ss_pred HhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 257 VCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 257 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
+. . .+++++++.+.+.+++.+.|+++.
T Consensus 251 ~~-~-~~~~~~~~~~~~~~~l~~~L~~~~ 277 (381)
T PRK02948 251 IL-K-NMQEESLRFKELRSYFLEQIQTLP 277 (381)
T ss_pred HH-H-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 75 3 578899999999999999999875
No 37
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.93 E-value=8e-25 Score=199.76 Aligned_cols=232 Identities=15% Similarity=0.191 Sum_probs=174.1
Q ss_pred hhHHHHHHHHHHHHHHHcCC-CCCCCcceEEecCChH-HHHHHHHHhc-----CC-CCeEEEecCCCCCccccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-SNFQVYTALL-----KP-HDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~-~~~~~~~~v~~~sG~~-~~~~~~~~~~-----~~-gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.....++ ++++.+++.+++ ++++ |++++|++ ++..++.++. ++ +|+|+++..+|+++..++..+...
T Consensus 39 ~~~~~l~-~a~~~~~~~~~~~~~~~----i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~ 113 (382)
T TIGR03403 39 ATHPAIA-EALDKLYKGINARDLDD----IIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESL 113 (382)
T ss_pred HHHHHHH-HHHHHHHHHcCcCCCCe----EEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHC
Confidence 4444555 344666677887 4543 88888885 5544666542 45 578999999999987766543333
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLV 175 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~ 175 (297)
+ .+++.+ +.+ +++.+|++++++.+++ +++++++ +++| +|.+.|+++|.++|+++|+++++|++|+.|..
T Consensus 114 G-----~~v~~v--~~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~ 184 (382)
T TIGR03403 114 G-----VEVTYL--PIN-EQGTITAEQVREAITE-KTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI 184 (382)
T ss_pred C-----CEEEEE--ecC-CCCCCCHHHHHHhccc-CCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC
Confidence 3 224444 445 4578999999999987 8898888 6777 89999999999999999999999999999988
Q ss_pred cccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhh-ccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHH
Q 022463 176 AAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI-NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVA 253 (297)
Q Consensus 176 ~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a 253 (297)
+.++..+ ++|++++|+||| .||.| |+++++++.... ...|+.. . .....||++.+.++++..|
T Consensus 185 ~~~~~~~---~~D~~~~s~~K~-~gp~G~g~l~vr~~~~~~p~~~g~~~-------~----~~~~~gt~~~~~~~al~~a 249 (382)
T TIGR03403 185 PVDVQKA---GVDFLSFSAHKF-HGPKGVGGLYIRKGVELTPLFHGGEH-------M----GGRRSGTLNVPYIVAMGEA 249 (382)
T ss_pred ccCcccc---CCCEEEEcchhh-CCCCceEEEEECCCCCCCCcccCCCC-------C----CCcccCCcChHHHHHHHHH
Confidence 8877766 899999999997 68999 999998865322 1111110 0 0112688999999999999
Q ss_pred HHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 254 LKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 254 l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
++.+. . .++.+.++.+.+.+++.+.|++++.++
T Consensus 250 l~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~~~ 282 (382)
T TIGR03403 250 MRLAN-E-YLDFEKSHVRRLRDRLEDALLELPDVF 282 (382)
T ss_pred HHHHH-H-hHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 98765 3 578889999999999999999887654
No 38
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.93 E-value=3.1e-24 Score=194.00 Aligned_cols=241 Identities=14% Similarity=0.038 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEe-cCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~-~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..++.+++++.+++++|+++++ .+++ .+|+.++..++.+++++||+|+++...|.+.. +.. .++..|.++
T Consensus 30 ~~~~~~~~~~~la~~~g~~~~~---~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~----~~~~~g~~~ 100 (356)
T cd06451 30 FLALMDEILEGLRYVFQTENGL---TFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WAD----MAERYGADV 100 (356)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC---EEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHH----HHHHhCCCe
Confidence 3455666779999999996443 2444 44567777788888999999999876666531 111 122233334
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 184 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~ 184 (297)
..+ +.+ .++.+|++++++.+++++|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.|..+.+....
T Consensus 101 ~~v--~~~-~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~-- 175 (356)
T cd06451 101 DVV--EKP-WGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEW-- 175 (356)
T ss_pred EEe--ecC-CCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcccccccc--
Confidence 444 444 346899999999998658999988 5555 899999999999999999999999999998877665544
Q ss_pred CCccEEEecCCccCCCCCc-eEEEEecCchhhccC--CccchhhHHHHhhhcccC--CCCCCCchHHHHHHHHHHHHHhh
Q 022463 185 EYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ--GKEVFYDYEEKINQAVFP--GLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 185 ~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~al~~al~~~~~ 259 (297)
++|++++|+||||++|.| |+++.+++...+... +...+..-.......... ...++++...++++.++++++.+
T Consensus 176 -~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~ 254 (356)
T cd06451 176 -GVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILE 254 (356)
T ss_pred -CccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHH
Confidence 789999999999999988 999998865322211 111100000001111001 23567888889999999999988
Q ss_pred hcChhhHHHHhhhhHHHHHhhccCC
Q 022463 260 LITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
. +++++.++...+.+++.+.|++.
T Consensus 255 ~-~~~~~~~~~~~~~~~l~~~L~~~ 278 (356)
T cd06451 255 E-GLENRWARHRRLAKALREGLEAL 278 (356)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHc
Confidence 7 99999999999999999999875
No 39
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.92 E-value=1.4e-23 Score=190.24 Aligned_cols=242 Identities=12% Similarity=0.066 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecC-CCCCcccccccccccccceeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDL-PHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~-~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
..++-+.+|+.+++++|+++++ ..+++++|+ .++..++.+++.+||.+++... .|+..+ .. .++..|..
T Consensus 33 ~~~~~~~~r~~la~l~~~~~~~--~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~---~~----~a~~~g~~ 103 (363)
T TIGR02326 33 YNIVVEQIRQQLLALATAEEGY--TSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARI---VQ----IAEYLGIP 103 (363)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc--eEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHH---HH----HHHHcCCc
Confidence 3444556889999999997531 136665554 5777688888888887766543 222211 11 01122333
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhc-CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
++.++ .+ .++.+|++++++.++++ +++++.+ +..+ +|...|+++|.++|+++|+++++|++|+.|..+.++..+
T Consensus 104 ~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~ 180 (363)
T TIGR02326 104 HHVVD--TG-EVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAEL 180 (363)
T ss_pred eEEEe--CC-CCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhc
Confidence 44444 44 45678999999999862 3466665 5444 899999999999999999999999999999998887776
Q ss_pred CCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccc-hhhHHHHhhhc-ccCC-CCCCCchHHHHHHHHHHHHHh
Q 022463 183 PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEV-FYDYEEKINQA-VFPG-LQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~-~~~~~~~~~~~-~~~~-~~~t~~~~~~~al~~al~~~~ 258 (297)
++|++++|+||||+||.| |+++++++...+....... ..+........ ..++ ...+++.+.+.++.+|++.+.
T Consensus 181 ---~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~ 257 (363)
T TIGR02326 181 ---HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELE 257 (363)
T ss_pred ---CccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 899999999999999999 9999988642221111000 00111111111 0111 134678899999999999987
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+..++++++++.+++++++++.|+++
T Consensus 258 ~~g~~~~~~~~~~~~~~~l~~~L~~~ 283 (363)
T TIGR02326 258 KEGGVAARHQRYQQNQKTLVAGMRAL 283 (363)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 76469999999999999999999876
No 40
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.92 E-value=3.1e-24 Score=189.02 Aligned_cols=222 Identities=20% Similarity=0.161 Sum_probs=158.3
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecc
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 112 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 112 (297)
++++.+++++|++. .+++++|+ .++.+++.++++|||+|+++.+.|.+....+. ..|..+..++.+
T Consensus 63 ~~~~~~A~~~ga~~-----~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~--------~~g~~~~~v~~~ 129 (294)
T cd00615 63 EAQELAARAFGAKH-----TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLV--------LSGAVPVYLKPE 129 (294)
T ss_pred HHHHHHHHHhCCCC-----EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHH--------HCCCEEEEecCc
Confidence 34499999999875 25557776 57887888899999999999988888765433 233334444433
Q ss_pred cCCC---CCcCCHHHHHHHhhh-cCCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCC--C
Q 022463 113 LNES---TGYIDYDQLEKSATL-FRPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF--E 185 (297)
Q Consensus 113 ~~~~---~~~~d~~~l~~~l~~-~~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~--~ 185 (297)
.+++ .+.+|++++++++++ .+++++++ +++.+|.+.|+++|.++|+++|+++++|++|+......+..+... .
T Consensus 130 ~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~ 209 (294)
T cd00615 130 RNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA 209 (294)
T ss_pred cCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhc
Confidence 3321 247899999999975 25788888 554479999999999999999999999999986432211111111 1
Q ss_pred CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChh
Q 022463 186 YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFS 264 (297)
Q Consensus 186 ~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~ 264 (297)
++|+++.|+||+++|+++ |++..+++.. ...++.........++|+++.++++..+++++... |.+
T Consensus 210 ~~div~~S~hK~l~g~~~~~~l~~~~~~~------------~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~-g~~ 276 (294)
T cd00615 210 GADIVVQSTHKTLPALTQGSMIHVKGDLV------------NPDRVNEALNLHQSTSPSYLILASLDVARAMMALE-GKE 276 (294)
T ss_pred CCcEEEEchhcccchHhHHHHHHhCCCcC------------CHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH-hHH
Confidence 799999999999999877 7777766421 11122221111226789999999999999999766 755
Q ss_pred hHHHHhhhhHHHHHhhcc
Q 022463 265 HIHVFSLHVYPAFVSNQN 282 (297)
Q Consensus 265 ~~~~~~~~l~~~l~~~l~ 282 (297)
..++..++.+++++.++
T Consensus 277 -~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 277 -LVEELIELALYARQEIN 293 (294)
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 56778888888888775
No 41
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.91 E-value=2.7e-23 Score=174.97 Aligned_cols=245 Identities=16% Similarity=0.139 Sum_probs=186.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
+..-++-+++++-+...|...... ..++.++|+.++.+++.+++.|||.|++-.. +.++.... ...+--|++
T Consensus 46 Pe~~qIm~~v~egikyVFkT~n~~--tf~isgsGh~g~E~al~N~lePgd~vLv~~~---G~wg~ra~---D~~~r~ga~ 117 (385)
T KOG2862|consen 46 PEFVQIMDEVLEGIKYVFKTANAQ--TFVISGSGHSGWEAALVNLLEPGDNVLVVST---GTWGQRAA---DCARRYGAE 117 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCc--eEEEecCCcchHHHHHHhhcCCCCeEEEEEe---chHHHHHH---HHHHhhCce
Confidence 445667777889999999987654 2455677778999899999999999998763 22221111 011122333
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE--cCCCCCCccc-HHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA--GASAYARLYD-YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~--~~~~~G~~~~-~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
+..++ .+ ......++.+.+.+.+++|+++.+ +.+.+|...| ++.+.++||+|+++++||...+.|..++.+..|
T Consensus 118 V~~v~--~~-~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDew 194 (385)
T KOG2862|consen 118 VDVVE--AD-IGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEW 194 (385)
T ss_pred eeEEe--cC-cccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhh
Confidence 55554 33 446789999999999999999999 4788999999 678889999999999999999999999999999
Q ss_pred CCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchh-hHHHHhh--hcc----cCCC-CCCCchHHHHHHHHH
Q 022463 183 PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFY-DYEEKIN--QAV----FPGL-QGGPHNHTITGLAVA 253 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~-~~~~~~~--~~~----~~~~-~~t~~~~~~~al~~a 253 (297)
++|+....++|.|++|.| +.|.+++++..++..+++... .|.+.+. ..+ .|.. ..|+++..++++.+|
T Consensus 195 ---gVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~A 271 (385)
T KOG2862|consen 195 ---GVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAA 271 (385)
T ss_pred ---cccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHH
Confidence 999999999999999999 999988877554444333110 1222111 111 1222 679999999999999
Q ss_pred HHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 254 LKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 254 l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
|+.+.++ |+++++++++++.++++.+|+++.
T Consensus 272 L~~I~ee-GL~~~~~rH~e~s~~l~~~l~~~G 302 (385)
T KOG2862|consen 272 LALIAEE-GLENSWRRHREMSKWLKLSLEALG 302 (385)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999 999999999999999999998854
No 42
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.91 E-value=5.4e-23 Score=186.34 Aligned_cols=223 Identities=16% Similarity=0.126 Sum_probs=156.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
+...+++ +.+++++|++. +++++|+ .++..++.+++++||+|+++..+|.+.+.. +...|.
T Consensus 44 ~~~~~l~----~~la~~~g~~~------i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~--------~~~~g~ 105 (361)
T cd06452 44 PPIKDFH----HDLAEFLGMDE------ARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVA--------AERAGL 105 (361)
T ss_pred chHHHHH----HHHHHHcCCce------EEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHH--------HHhcCC
Confidence 4456666 89999999932 7777777 477778888899999999998877776432 223333
Q ss_pred eeEeeecccCCC-CCcCCHHHHHHHhhh------cCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccc
Q 022463 105 FFETMPYRLNES-TGYIDYDQLEKSATL------FRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLV 175 (297)
Q Consensus 105 ~~~~v~~~~~~~-~~~~d~~~l~~~l~~------~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~ 175 (297)
.+..+ +.+.+ ++.+|++++++.+++ .++++|++ +++| +|...|+++|.++|+++|+++|+|++|+.|..
T Consensus 106 ~~~~v--~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~ 183 (361)
T cd06452 106 NVREV--PNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRM 183 (361)
T ss_pred EEEEE--ecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCc
Confidence 34444 44422 358999999999873 26788888 6766 89999999999999999999999999998877
Q ss_pred cccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhccc-------CCCCCCCchHHH
Q 022463 176 AAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVF-------PGLQGGPHNHTI 247 (297)
Q Consensus 176 ~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~t~~~~~~ 247 (297)
+...... ++|++++|+||++++|.+ |+++++++. .+++..... ....++++....
T Consensus 184 ~~~~~~~---~~d~~~~s~~K~l~~~~~~G~l~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (361)
T cd06452 184 PVSGKEL---GADFIVGSGHKSMAASAPIGVLATTEEW--------------ADIVFRTSQMFKIKEVELLGCTLRGAPL 246 (361)
T ss_pred CCCHHHc---CCCEEEecCCccccCCCCeEEEEECHHH--------------HHHHhccccccccceeeeeccccCchHH
Confidence 6654444 789999999999987666 999988743 222211110 111234444555
Q ss_pred HHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 248 TGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 248 ~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+++.++++.+.+. ++ ..++..+.++++.+.|+++++++
T Consensus 247 ~~~~~al~~~~~~--~~-~~~~~~~~~~~l~~~L~~l~g~~ 284 (361)
T cd06452 247 VTLMASFPHVKER--VK-RWDEEVEKARWFVAELEKIEGIK 284 (361)
T ss_pred HHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHhcCCCeE
Confidence 6666677665432 23 33444456688889999887654
No 43
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.91 E-value=3.4e-23 Score=190.04 Aligned_cols=242 Identities=10% Similarity=-0.028 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHcCCC-C-CCCcceEEecCCh-HHHHHHHHHhc--------CC-----CCeEEEecCCCCCccccc
Q 022463 28 IDMAESLCQKRALEAFRLD-P-EKWGVNVQSLSGS-PSNFQVYTALL--------KP-----HDRIMALDLPHGGHLSHG 91 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~-~-~~~~~~v~~~sG~-~~~~~~~~~~~--------~~-----gd~Vl~~~~~~~~~~~~~ 91 (297)
..++|+.+++++++++|++ + ++. ...+|||. .+|..++.+.. +. ...|+++..+|.+.....
T Consensus 78 ~~~le~~~~~~la~llg~~~~~~~~--~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~ 155 (431)
T TIGR01788 78 TAEIENRCVNMLADLWHAPAKDAEA--VGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFA 155 (431)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCC--eEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHH
Confidence 3489999999999999998 3 341 12235555 57765654432 11 236899999999986544
Q ss_pred ccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc------CCE
Q 022463 92 YQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ------KAI 163 (297)
Q Consensus 92 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~------g~~ 163 (297)
.. .|..++.+ +++++++.+|+++|+++|++ +|.+|++ ..++ +|.+.|+++|.++|+++ |++
T Consensus 156 ~~--------lg~~v~~i--~~d~~~~~vd~~~L~~~i~~-~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~ 224 (431)
T TIGR01788 156 RY--------FDVELREV--PMDPGRYVIDPEQVVEAVDE-NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIP 224 (431)
T ss_pred HH--------cCceeEEE--ecCCCceeeCHHHHHHHHhh-CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCce
Confidence 32 23234444 45543468999999999987 8888888 4444 89999999999999999 999
Q ss_pred EEEehhhhcccccccCCCCC----CCCccEEEecCCccCCCCCc-eEEEEecCchh-hccCCccchhhHHHHhhhcc-cC
Q 022463 164 MLADMAHISGLVAAGVIPSP----FEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE-INKQGKEVFYDYEEKINQAV-FP 236 (297)
Q Consensus 164 livD~a~~~g~~~~~~~~~~----~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-~~ 236 (297)
+++|++|+.+..++.....+ ..++|.+++|+|||+.+|.| |+++++++... ....-. .+++.... ..
T Consensus 225 ~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~------~~yl~~~~~~~ 298 (431)
T TIGR01788 225 IHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFH------VNYLGGDEPTF 298 (431)
T ss_pred EEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheec------ccccCCCCCCc
Confidence 99999999766554322221 12799999999999989999 99999875211 000000 00010000 01
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 237 GLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 237 ~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
...++.+....++++..+..+... |++++.+++.+++++|.+.|++.+.++-
T Consensus 299 t~~~sR~g~~al~~w~~l~~lG~~-G~~~i~~~~~~la~~l~~~L~~~~~~el 350 (431)
T TIGR01788 299 TLNFSRPANQVIAQYYNFLRLGRE-GYRKIMQNSLDVARYLAEEIAKLGPFEI 350 (431)
T ss_pred ceecCchHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 223444444555677888888888 9999999999999999999999987663
No 44
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.91 E-value=1.5e-23 Score=189.91 Aligned_cols=224 Identities=19% Similarity=0.190 Sum_probs=158.2
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh-cCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.+..+++| +.+++++|.++ .+.++|||+++.+++.++ +++||+|+++.+++.+...+.. ..|
T Consensus 24 g~~~~~fE----~~~a~~~g~~~-----~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~--------~~G 86 (363)
T PF01041_consen 24 GPYVEEFE----KEFAEYFGVKY-----AVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAIL--------WAG 86 (363)
T ss_dssp SHHHHHHH----HHHHHHHTSSE-----EEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH--------HTT
T ss_pred CHHHHHHH----HHHHHHhCCCe-----EEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHH--------Hhc
Confidence 58889999 99999999887 489999999888888888 8999999999988877766544 233
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 183 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~ 183 (297)
.++++++++++++.+|++.+++.+++ +|++|++ .+.+|...|+++|.++|+++|++||+|+||+.|....+....+
T Consensus 87 --~~pv~~Di~~~~~~id~~~~~~~i~~-~t~ai~~-~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~ 162 (363)
T PF01041_consen 87 --AEPVFVDIDPETLNIDPEALEKAITP-KTKAILV-VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGS 162 (363)
T ss_dssp ---EEEEE-BETTTSSB-HHHHHHHHHT-TEEEEEE-E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTS
T ss_pred --cEEEEEeccCCcCCcCHHHHHHHhcc-CccEEEE-ecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccC
Confidence 45677789999999999999999998 9999887 2358988899999999999999999999999998775544433
Q ss_pred CCCccEEEecCC--ccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCC--------------CCCCCchHHH
Q 022463 184 FEYADVVTTTTH--KSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG--------------LQGGPHNHTI 247 (297)
Q Consensus 184 ~~~~D~~~~s~~--K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~t~~~~~~ 247 (297)
..|+.++|++ |.+.+..||+|+++++. +.+++......+ .........+
T Consensus 163 --~gd~~~fSf~~~K~i~~geGG~v~~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~ 227 (363)
T PF01041_consen 163 --FGDIAIFSFHPTKIITTGEGGAVVTNDPE-------------LAERARALRNHGRSRDAFRRYRHELPPGYNFRMSEL 227 (363)
T ss_dssp --SSSEEEEESSTTSSS-SSS-EEEEESTHH-------------HHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHH
T ss_pred --CCCceEecCCCCCCCcCCCCeeEEecHHH-------------HHHHhhhhhccCcCccccccccccccCCcccccHHH
Confidence 4588888875 99988888999998863 222211111000 0001111222
Q ss_pred HHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 248 TGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 248 ~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
....++.++. .++...++++++++++.+.|++.+.+.
T Consensus 228 -~AAigl~QL~---~L~~~~~~R~~~a~~y~~~L~~~~~~~ 264 (363)
T PF01041_consen 228 -QAAIGLAQLK---RLDEIIARRRENAQRYREALAGIPGIK 264 (363)
T ss_dssp -HHHHHHHHHH---THHHHHHHHHHHHHHHHHHHTTGTTEE
T ss_pred -HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhcCCCcc
Confidence 2233444554 668888999999999999999999764
No 45
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.91 E-value=1.8e-22 Score=183.36 Aligned_cols=242 Identities=12% Similarity=0.058 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEe-cCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~-~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
+..+++++.+++++|++++. ..+++ .+|+.++..++.+++.+||.|++....+.+.. +. ..++..|..+..
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~--~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~----~~~~~~g~~~~~ 108 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGY--TCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IA----QIAEYLGIAHVV 108 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCc--eEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HH----HHHHHcCCcEEE
Confidence 35667889999999996532 13545 45566777788888899999998764333221 10 112223333444
Q ss_pred eecccCCCCCcCCHHHHHHHhhhc-CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC
Q 022463 109 MPYRLNESTGYIDYDQLEKSATLF-RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE 185 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~ 185 (297)
++ .+ .++.+|++++++.+++. ++++|.+ +++| +|...|+++|.++|+++|+++++|++|+.|..+.++..+
T Consensus 109 i~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~--- 182 (368)
T PRK13479 109 LD--TG-EDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAEL--- 182 (368)
T ss_pred EE--CC-CCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCcccccccc---
Confidence 54 44 34678999999999752 3566766 6655 899999999999999999999999999998887776665
Q ss_pred CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccch-hhHHHHhhhcccC-CCCCCCchHHHHHHHHHHHHHhhhcC
Q 022463 186 YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVF-YDYEEKINQAVFP-GLQGGPHNHTITGLAVALKQVCTLIT 262 (297)
Q Consensus 186 ~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~~t~~~~~~~al~~al~~~~~~~g 262 (297)
++|++++|+|||++||.| |+++++++...++...+..+ .++.......... ....|++...++++.++++.+.+..+
T Consensus 183 ~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~ 262 (368)
T PRK13479 183 GIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGG 262 (368)
T ss_pred CceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999 99999886532221111110 0111111111001 11247888999999999999977646
Q ss_pred hhhHHHHhhhhHHHHHhhccCCC
Q 022463 263 FSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
+++..++...+++++.+.|+++.
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~g 285 (368)
T PRK13479 263 VPARGARYANNQRTLVAGMRALG 285 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999998864
No 46
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.90 E-value=9.9e-23 Score=185.56 Aligned_cols=235 Identities=14% Similarity=0.124 Sum_probs=165.6
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh-cCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.+...++| +.+++++|++. .+.+++|++++..++.++ +++||+|+++..+|.+...+.. ..|
T Consensus 32 g~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~--------~~G 94 (379)
T PRK11658 32 GPKNQALE----QAFCQLTGNQH-----AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIV--------LLG 94 (379)
T ss_pred CHhHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHH--------HcC
Confidence 46678888 89999999975 377777777877788888 8999999999988877754332 234
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 183 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~ 183 (297)
. +++.++++++++.+|++++++.+++ +|++|+.+ +.+|...|+++|.++|+++|+++|+|++|+.|....+.....
T Consensus 95 ~--~~v~vd~~~~~~~~d~~~l~~~i~~-~tkav~~~-~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~ 170 (379)
T PRK11658 95 A--TPVMVDVDRDTLMVTPEAIEAAITP-RTKAIIPV-HYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGA 170 (379)
T ss_pred C--EEEEEecCCCcCCcCHHHHHHhccc-CCeEEEEe-CCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCC
Confidence 3 3344566656678999999999987 89988762 127999999999999999999999999999987765422221
Q ss_pred CCCccEEEecCCccCCCCCceEEEEecC-ch--hh-ccC-CccchhhHHHHhhhcccCC----CCCCCchHHHHHHHHHH
Q 022463 184 FEYADVVTTTTHKSLRGPRGAMIFFRKG-VK--EI-NKQ-GKEVFYDYEEKINQAVFPG----LQGGPHNHTITGLAVAL 254 (297)
Q Consensus 184 ~~~~D~~~~s~~K~l~gp~gG~i~~~~~-~~--~~-~~~-g~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~al~~al 254 (297)
.+.|+++++.+|.+.++.||+++++++ .. .+ ... |+.. +..+.......+. ..|+ + ..+..+.+|+
T Consensus 171 -~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~--~~~~~~~~~~~~~~~~~~~G~-n-~~~~~l~AAl 245 (379)
T PRK11658 171 -RGTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGV--DAFDRQTQGRAPQAEVLTPGY-K-YNLADINAAI 245 (379)
T ss_pred -CCCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCc--chhhhhcccCCCcceeecccc-c-cCcCHHHHHH
Confidence 156788888899999988898888653 21 22 111 2211 1111111000000 0121 1 1234666777
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
...... +++.+.++++++++++.+.|++++.
T Consensus 246 ~~~ql~-~l~~~~~~r~~~a~~~~~~L~~~~~ 276 (379)
T PRK11658 246 ALVQLA-KLEALNARRREIAARYLQALADLPF 276 (379)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 777666 9999999999999999999998874
No 47
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.90 E-value=2.6e-22 Score=182.46 Aligned_cols=242 Identities=16% Similarity=0.172 Sum_probs=157.7
Q ss_pred cccCCCCCCCCccCCCch--hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCC
Q 022463 9 TNKYSEGYPGARYYGGNE--YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGG 86 (297)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~ 86 (297)
.++|+.++.+++...+.. .........++.+++++|++.. +++++|+.++..++.+++++||.|+++..+|.+
T Consensus 28 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~-----~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s 102 (370)
T TIGR02539 28 LVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEA-----RVTHGAREGKFAVMHALCKEGDWVVLDGLAHYT 102 (370)
T ss_pred HHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCce-----EEECChHHHHHHHHHHhhCCCCEEEECCcccHH
Confidence 345666766666654432 1111112233779999999862 445555578877889999999999998888877
Q ss_pred cccccccccccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhh------cCCcEEEE-cCCC-CCCcccHHHHHHHH
Q 022463 87 HLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL------FRPKLIVA-GASA-YARLYDYERIRKVC 157 (297)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~------~~~~~v~~-~~~~-~G~~~~~~~i~~la 157 (297)
.+. +++..|..+..++ .+. .++.+|++++++.+++ .++++|++ +++| +|...|+++|.++|
T Consensus 103 ~~~--------~~~~~g~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la 172 (370)
T TIGR02539 103 SYV--------AAERAGLNVKEVP--HTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVC 172 (370)
T ss_pred HHH--------HHHHcCCEEEEEe--cCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHH
Confidence 643 2333444454454 332 3578999999999863 25778888 6666 89999999999999
Q ss_pred HhcCCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccC
Q 022463 158 NKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP 236 (297)
Q Consensus 158 ~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (297)
+++|+++++|++|+.|..+.+.... ++|+++.|+||+++++.+ |+++++++. .+.+.....|
T Consensus 173 ~~~~~~livDea~~~g~~~~~~~~~---~~di~v~s~sK~~~~~g~~G~l~~~~~~--------------i~~l~~~~~~ 235 (370)
T TIGR02539 173 REKGVPLLLNCAYTVGRMPVSAKEI---GADFIVGSGHKSMAASGPCGVLGMSEEW--------------EDIVLRKSRY 235 (370)
T ss_pred HHcCCeEEEECccccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEECHHH--------------HhhhcccccC
Confidence 9999999999999998655544333 689999999999975444 999988753 2222221111
Q ss_pred C-------CCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 237 G-------LQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 237 ~-------~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
. ..++.......++.++++...+. ++. +.+.....+++.++|+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--l~~-~~~~~~~~~~l~~~L~~~g 288 (370)
T TIGR02539 236 SPVKEVELLGCTSRGAPIVTMMASFPHVVER--VKR-WDEEVKKTRWFVAELEDIG 288 (370)
T ss_pred CccceeeeecccccccHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHhCC
Confidence 0 01233333455555566543322 222 2233344568888888775
No 48
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.90 E-value=4.5e-22 Score=182.31 Aligned_cols=231 Identities=17% Similarity=0.159 Sum_probs=162.1
Q ss_pred CCCCCCCCccCCC-chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccc
Q 022463 12 YSEGYPGARYYGG-NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSH 90 (297)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~ 90 (297)
|+.++++++...+ .+...++| +.+++++|.+. .+++++|+.++..++.+++++||+|+++..+|++....
T Consensus 68 ~~~~~~~s~~~~G~~~~~~~le----~~ia~~~g~~~-----~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~ 138 (393)
T TIGR01822 68 HGFGMSSVRFICGTQDIHKELE----AKIAAFLGTED-----TILYASCFDANGGLFETLLGAEDAIISDALNHASIIDG 138 (393)
T ss_pred hCCCCCCcCcccCChHHHHHHH----HHHHHHhCCCc-----EEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHH
Confidence 4446667776655 34455666 89999999864 37777777777778888899999999999999887653
Q ss_pred cccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc-----CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCE
Q 022463 91 GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVA-GASA-YARLYDYERIRKVCNKQKAI 163 (297)
Q Consensus 91 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~ 163 (297)
+.. .+... +. + ..+|++++++.+++. +|++|++ +.+| +|.+.|+++|.++|++||++
T Consensus 139 ~~~--------~~~~~--~~--~----~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~ 202 (393)
T TIGR01822 139 VRL--------CKAKR--YR--Y----ANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDAL 202 (393)
T ss_pred HHh--------cCCce--EE--e----CCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCE
Confidence 321 11111 11 1 137899999988752 5677777 4445 79999999999999999999
Q ss_pred EEEehhhhcccccccCCC----CC-CCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCC-
Q 022463 164 MLADMAHISGLVAAGVIP----SP-FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG- 237 (297)
Q Consensus 164 livD~a~~~g~~~~~~~~----~~-~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 237 (297)
+|+|++|+.|........ .. ..++|++++|+||+++|+++|+++.+++ +.+.+.....+.
T Consensus 203 li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~--------------~~~~l~~~~~~~~ 268 (393)
T TIGR01822 203 VMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKE--------------VVELLRQRSRPYL 268 (393)
T ss_pred EEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHH--------------HHHHHHHhCccce
Confidence 999999988765432110 00 1158999999999999888899988773 344333321121
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 238 LQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 238 ~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
..++.+...++++.++++.+. ..++++++.+++.+++.+.|++.
T Consensus 269 ~~~~~~~~~~~a~~~al~~~~---~~~~~~~~~~~~~~~l~~~L~~~ 312 (393)
T TIGR01822 269 FSNSLPPAVVGASIKVLEMLE---ASNELRDRLWANTRYFRERMEAA 312 (393)
T ss_pred ecCCCCHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHc
Confidence 234455556666777777663 45678888889999999888764
No 49
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.89 E-value=4.3e-22 Score=181.68 Aligned_cols=239 Identities=18% Similarity=0.122 Sum_probs=157.8
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh-cCCCCeEEEecCCCCCccccccccccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
..+...++| +.+++++|++. .+++++|++++..++.++ +++||+|+++.++|.+...+ +...
T Consensus 27 ~g~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~--------~~~~ 89 (380)
T TIGR03588 27 QGPTVPAFE----EALAEYVGAKY-----AVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANC--------ALYC 89 (380)
T ss_pred CChhHHHHH----HHHHHHHCCCe-----EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH--------HHHc
Confidence 345677788 88999999875 377888888877788888 89999999999877666432 2233
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhh----hcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSAT----LFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~----~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
|. +++.++++++++.+|++++++.++ + +|++|+++ +.+|...|+++|.++|++||+++|+|++|+.|.. .+
T Consensus 90 G~--~~~~~~~~~~~~~~d~~~l~~~i~~~~~~-~t~~v~~~-~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~ 164 (380)
T TIGR03588 90 GA--KVDFVDIDPDTGNIDEDALEKKLAAAKGK-LPKAIVPV-DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YG 164 (380)
T ss_pred CC--EEEEEecCCCcCCcCHHHHHHHhhcccCC-CceEEEEe-CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cC
Confidence 43 334456665678899999999998 5 78888862 1378899999999999999999999999999875 22
Q ss_pred CCCC-CCCCccEEEecCC--ccCCCCCceEEEEecCc-hh--h-ccC-CccchhhHHHHhh---hcccCCCCC-CCchHH
Q 022463 179 VIPS-PFEYADVVTTTTH--KSLRGPRGAMIFFRKGV-KE--I-NKQ-GKEVFYDYEEKIN---QAVFPGLQG-GPHNHT 246 (297)
Q Consensus 179 ~~~~-~~~~~D~~~~s~~--K~l~gp~gG~i~~~~~~-~~--~-~~~-g~~~~~~~~~~~~---~~~~~~~~~-t~~~~~ 246 (297)
..+. .....|+.++|+| |++..+.||+++++++. .. + ... |............ ..+.....| +.....
T Consensus 165 ~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~ 244 (380)
T TIGR03588 165 GKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTD 244 (380)
T ss_pred CEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccH
Confidence 2222 1113499999987 99988888988887652 11 1 111 1111000000000 000000011 111111
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+ ....++.++. .++.+.++++++++++.+.|++++.+.
T Consensus 245 l-~aa~g~~qL~---~l~~~~~~r~~~~~~~~~~L~~~~~~~ 282 (380)
T TIGR03588 245 I-QAALGLSQLK---KLDRFVAKRREIAARYDRLLKDLPYFT 282 (380)
T ss_pred H-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 1 1122333333 568899999999999999999988755
No 50
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.89 E-value=3.1e-22 Score=187.38 Aligned_cols=254 Identities=14% Similarity=0.110 Sum_probs=169.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCCC-----------CCCcceEEecCChHHHHHHHHHh----cC-------------
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLDP-----------EKWGVNVQSLSGSPSNFQVYTAL----LK------------- 72 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~~-----------~~~~~~v~~~sG~~~~~~~~~~~----~~------------- 72 (297)
.+..++...++|+.+.++++++++..+ +. +..++.+.||.+|+.++.+. ++
T Consensus 120 ~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~-~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl 198 (522)
T TIGR03799 120 KIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADH-SLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL 198 (522)
T ss_pred eeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCC-CCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence 344567889999999999999986321 11 11344445556777544332 11
Q ss_pred ---------CCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-
Q 022463 73 ---------PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA- 139 (297)
Q Consensus 73 ---------~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~- 139 (297)
++..|++++.+|.|+......+. +. ...++.+ +.| +++.+|++.|++.|.+ .+++.+.+
T Consensus 199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lg---lg--~~~v~~v--p~d-~~g~~d~~~L~~~i~~~~~~g~~~~~vv 270 (522)
T TIGR03799 199 FAALKHYGYDGLAILVSERGHYSLGKAADVLG---IG--RDNLIAI--KTD-ANNRIDVDALRDKCAELAEQNIKPLAIV 270 (522)
T ss_pred hhhhhhccCCceEEEECCCchHHHHHHHHHcC---CC--cccEEEE--EeC-CCCcCCHHHHHHHHHHHHHCCCCcEEEE
Confidence 23578888889999854333221 10 0024344 456 6789999999999863 24444433
Q ss_pred ---cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC---CCCccEEEecCCccCCCCCc-eEEEEecCc
Q 022463 140 ---GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FEYADVVTTTTHKSLRGPRG-AMIFFRKGV 212 (297)
Q Consensus 140 ---~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~---~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~ 212 (297)
+.+.+|.+.|+++|.++|+++|++++||+||+.+....+..... ..++|++++++|||+.+|.| |+++++++.
T Consensus 271 ataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~ 350 (522)
T TIGR03799 271 GVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPA 350 (522)
T ss_pred EEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHH
Confidence 23448999999999999999999999999998777654421111 12689999999999999999 999998753
Q ss_pred hhhccCCccchhhHHHHh-hhcc-cCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 213 KEINKQGKEVFYDYEEKI-NQAV-FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 213 ~~~~~~g~~~~~~~~~~~-~~~~-~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
..+...... .|...- .... .....+|.+...+ .++++++.+... |++++.++...++++|.+.|++.+.++
T Consensus 351 ~~~~~~~~~---~Yl~~~~~~d~~~~~legsR~~~al-~lw~aL~~lG~~-G~~~ii~~~~~la~~l~~~L~~~~~~e 423 (522)
T TIGR03799 351 LMSAIEHHA---EYILRKGSKDLGSHTLEGSRPGMAM-LVYAGLHIIGRK-GYELLIDQSIEKAKYFADLIQQQPDFE 423 (522)
T ss_pred HHHHhccCc---chhcCCCCCccccceeecCcchHHH-HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 211000000 111000 0000 0122456665553 689999999988 999999999999999999999998876
No 51
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.89 E-value=9.5e-22 Score=178.86 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc------CCCCeEEEecCCCCCcccccccccccccce
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL------KPHDRIMALDLPHGGHLSHGYQTDTKKISA 101 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~------~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 101 (297)
..++++.+++++++++|+++++ .+++++|+.++..++.++. ++||+|+++..+|.+.... ++.
T Consensus 57 ~~~~~~~~~~~la~~~g~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~--------~~~ 125 (373)
T TIGR03812 57 TKKIEEEVVGSLGNLLHLPDAY---GYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKA--------AEM 125 (373)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC---eEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHH--------HHH
Confidence 3566677889999999998654 2444444456665555442 4779999998888764322 223
Q ss_pred eeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCc-EEEEcCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccccc-
Q 022463 102 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK-LIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG- 178 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~-~v~~~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~- 178 (297)
.|..++.+ +.+ .++.+|++++++.+++ ++. +++++++| +|.+.|+++|.++|+++|+++++|++|+.+..+..
T Consensus 126 ~G~~~~~v--~~~-~~~~~d~~~l~~~l~~-~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~ 201 (373)
T TIGR03812 126 LGLELRYA--PLD-EDYTVDVKDVEDLIDD-NTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLK 201 (373)
T ss_pred cCCeEEEE--eeC-CCCCcCHHHHHHHHhh-CcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHh
Confidence 34334444 444 4678999999999987 664 44445444 89999999999999999999999999986654321
Q ss_pred --CC--C--CCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhh--cccC-----CCCCCCch
Q 022463 179 --VI--P--SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQ--AVFP-----GLQGGPHN 244 (297)
Q Consensus 179 --~~--~--~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~-----~~~~t~~~ 244 (297)
.. . ....++|++++|+|||+.+|.+ |+++..++ ++.+.+.. .+.. ...||++.
T Consensus 202 ~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~gt~~~ 268 (373)
T TIGR03812 202 KGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSK-------------SYLKYLSVDAPYLTVKKQATITGTRSG 268 (373)
T ss_pred cCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCH-------------HHHhhhcccCcccCCCCCcceEeechh
Confidence 10 1 0112789999999998777655 55554432 22222211 0100 11367788
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
..++++.++++.+.+. |++++.++..++++++.+.|++++.
T Consensus 269 ~~~~~~~~~l~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~g~ 309 (373)
T TIGR03812 269 ASAAATYAVIKYLGRE-GYRKIVAECMENTRYLVEELKKIGF 309 (373)
T ss_pred HHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8899999999998877 9999999999999999999998764
No 52
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.89 E-value=1.1e-22 Score=183.42 Aligned_cols=228 Identities=21% Similarity=0.246 Sum_probs=156.0
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecc
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 112 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 112 (297)
++++.+|++||++. +.++++||+ +|.+++.++++|||.||++.+.|-|.+.. +.+.|.....+...
T Consensus 70 eAe~~aA~~fGAd~-----t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~a--------lil~ga~Pvyi~p~ 136 (417)
T PF01276_consen 70 EAEELAARAFGADK-----TFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNA--------LILSGAIPVYIPPE 136 (417)
T ss_dssp HHHHHHHHHHTESE-----EEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHH--------HHHHTEEEEEEEEE
T ss_pred HHHHHHHHhcCCCe-----EEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHH--------HHHcCCeEEEecCC
Confidence 34499999999997 478889995 89889999999999999999888887653 34555555544433
Q ss_pred cCCCC---CcCCH-----HHHHHHhhhcC----CcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 113 LNEST---GYIDY-----DQLEKSATLFR----PKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 113 ~~~~~---~~~d~-----~~l~~~l~~~~----~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
+++. +.+++ +.++++|+++. ++++++ +++.+|.+.|+++|.++|++++++|+||+||.+.....++
T Consensus 137 -~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~l 215 (417)
T PF01276_consen 137 -DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPL 215 (417)
T ss_dssp -E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGG
T ss_pred -ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCC
Confidence 3222 35566 99999998622 234777 6777899999999999999999999999999765433333
Q ss_pred CCCCCC-Ccc-------EEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHH
Q 022463 180 IPSPFE-YAD-------VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGL 250 (297)
Q Consensus 180 ~~~~~~-~~D-------~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al 250 (297)
...... ++| +++.|.||.+.+... ++|..+.+.. -..++++....-..+++|+++.++++
T Consensus 216 p~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~-----------v~~~~~~~~l~~~~TTSPSY~lmASl 284 (417)
T PF01276_consen 216 PRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRI-----------VDHERVNEALSMHQTTSPSYPLMASL 284 (417)
T ss_dssp GTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCC-----------TTHHHHHHHHHHHS-SS--HHHHHHH
T ss_pred ccchhhccCccccccceeeeechhhcccccccceEEEecCCCc-----------ccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 332222 899 999999999999888 7777777520 01233333322223678999999999
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhc---cCCCCc
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQ---NNSENI 287 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l---~~~~~~ 287 (297)
..|.+++... .-+++.++..+++..+++.+ ++.+.+
T Consensus 285 D~a~~~m~~~-~G~~l~~~~i~~a~~~R~~i~~~~~~~~~ 323 (417)
T PF01276_consen 285 DVARAQMEEE-EGRELLEEAIELAEEFRKKINRLNDIWGF 323 (417)
T ss_dssp HHHHHHHSHH-HHHHHHHHHHHHHHHHHHHHHHHCCT-SS
T ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 9999999444 33556666777888888888 555543
No 53
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.89 E-value=1.5e-22 Score=184.37 Aligned_cols=236 Identities=11% Similarity=0.018 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEec--CChHHHHHHHHHhcCC-CCeEEEecCCCCCcccccccccccccceee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSL--SGSPSNFQVYTALLKP-HDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~--sG~~~~~~~~~~~~~~-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
...++-+.+|+.++++++++.++ .++++ |||.++.+++.+++++ ++.|++ ..+|++.+.... .+..++ .
T Consensus 45 ~f~~~~~~~r~~l~~l~~~~~~~---~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~-~~~~g~--~- 116 (378)
T PRK03080 45 PVKALLKRVIEGTRELLSLPEGY---EVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDV-VKQLKL--E- 116 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc---eEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHH-HhhcCC--C-
Confidence 34566678999999999985322 36654 4555666678888875 555555 466766433210 011222 0
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-c-CCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-G-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~-~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+++.++ .+ .+..+|+++++ .+++|.+ | .+++|...|+++|.+ +++|+++++|++|++|..++++..
T Consensus 117 -~v~~~~--~~-~g~~~d~~~i~------~~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~ 184 (378)
T PRK03080 117 -DPRVLE--AD-YGSLPDLSAVD------FDRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK 184 (378)
T ss_pred -CceEec--cC-CCCCCCHhhcC------CCCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH
Confidence 244443 33 44567777633 2456666 5 445899999999999 889999999999999999998764
Q ss_pred CCCCCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccchhhHHH------HhhhcccCCCCCCCchHHHHHHH
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEVFYDYEE------KINQAVFPGLQGGPHNHTITGLA 251 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~~~~~~~------~~~~~~~~~~~~t~~~~~~~al~ 251 (297)
+|++++|+||||++|.| |+++++++...+ ...||... .+.+ ........+..+|+++..+.++.
T Consensus 185 -----iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~ 258 (378)
T PRK03080 185 -----LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIP-KFFRLTKGGKAIENSFKGQTINTPSMLTVEDYL 258 (378)
T ss_pred -----CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCc-hhheeccchHHhhhhhcCCcccCchHHHHHHHH
Confidence 69999999999999999 999999976432 22233211 1111 11111112235678888999999
Q ss_pred HHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 252 VALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 252 ~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+||+++.+..|++++++|++.+.+++++.|++++.++
T Consensus 259 ~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~ 295 (378)
T PRK03080 259 DQLDWANSIGGLDALIARTAANASVLYDWAEKTPWAT 295 (378)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999764799999999999999999999887543
No 54
>PLN02263 serine decarboxylase
Probab=99.89 E-value=2.7e-21 Score=176.90 Aligned_cols=238 Identities=12% Similarity=0.036 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--CCCCeEEEecCCCCCcccccccccccccceeee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
...++|+++.+++++++|.+++++ ..++.+.||.+|+.++.+.- .+...+++++.+|.|+.... .+.|.
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~-~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa--------~llgi 200 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA--------RMYRM 200 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCC-eEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHH--------HhcCC
Confidence 578999999999999999976432 13555566678886665542 23447778888888886543 34444
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhcC--CcEEEE--cCCCCCCcccHHHHHHHHHhcCC-----EEEEehhhhcccc
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLFR--PKLIVA--GASAYARLYDYERIRKVCNKQKA-----IMLADMAHISGLV 175 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~~--~~~v~~--~~~~~G~~~~~~~i~~la~~~g~-----~livD~a~~~g~~ 175 (297)
+++.+ +.+ +++++|++.|+++|.++. |-+|+. +.+++|.+.|+++|.++|+++|+ +++||+|.+...+
T Consensus 201 ~~~~V--p~d-~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l 277 (470)
T PLN02263 201 ECVKV--DTL-VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMM 277 (470)
T ss_pred cceEe--ccC-CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHh
Confidence 45445 455 678999999999998633 445544 46668999999999999999997 9999999876666
Q ss_pred cccCCCCCCC---CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHH
Q 022463 176 AAGVIPSPFE---YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLA 251 (297)
Q Consensus 176 ~~~~~~~~~~---~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~ 251 (297)
|+--...+++ .+|.++.++|||+..|.+ |+++++++....+. .-.+++... -+...++.+....+.++
T Consensus 278 Pf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~-------~~~~Yl~~~-d~ti~gSR~g~~al~lW 349 (470)
T PLN02263 278 PFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS-------SNVEYLASR-DATIMGSRNGHAPIFLW 349 (470)
T ss_pred hhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhhHhhhc-------cChHhhCCC-CCCcCCCCCcHHHHHHH
Confidence 5422222233 499999999999999999 99999974210000 001122221 13446777776678889
Q ss_pred HHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 252 VALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 252 ~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
++|+.+... |+.+..+++.++++++.+.|++.+
T Consensus 350 ~~L~~~G~~-G~~~~i~~~~~~A~~l~~~l~~~g 382 (470)
T PLN02263 350 YTLNRKGYR-GFQKEVQKCLRNAHYLKDRLREAG 382 (470)
T ss_pred HHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999988 999999999999999999998874
No 55
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.89 E-value=1e-21 Score=180.19 Aligned_cols=249 Identities=10% Similarity=0.007 Sum_probs=164.5
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCC--CCeEEEecCCCCCcccccccccccccce
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKP--HDRIMALDLPHGGHLSHGYQTDTKKISA 101 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~--gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 101 (297)
.....++++.+++++++++|++.++ .+++++|++ ++.++..+.+.+ ||+|+++...|+++...+......
T Consensus 59 ~~g~~~~~~~~~~~la~~~g~~~~~---v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~---- 131 (398)
T cd00613 59 SQGRLQALFELQTMLCELTGMDVAN---ASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEP---- 131 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCccc---eeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhccc----
Confidence 3556688888889999999997644 133444554 444444555666 999999999999987665533211
Q ss_pred eeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCCCcccH-HHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 102 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYARLYDY-ERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G~~~~~-~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
.|..++.+ +.+ +++.+|++++++.+++ +|++|++ +++.+|.+.|+ ++|.++|++||+++|+|++|+.+..+...
T Consensus 132 ~g~~~~~v--~~~-~~~~~d~~~l~~~i~~-~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~ 207 (398)
T cd00613 132 LGIEVVEV--PSD-EGGTVDLEALKEEVSE-EVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPP 207 (398)
T ss_pred CCcEEEEe--ccC-CCCCcCHHHHHHhcCC-CeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCCCh
Confidence 12224334 444 4567899999999987 8998888 55457888885 99999999999999999998776654443
Q ss_pred CCCCCCCccEEEecCCccCC-----CCCceEEEEecCchhhc---cCCccchhhHHHH----hh----hccc-CCC--CC
Q 022463 180 IPSPFEYADVVTTTTHKSLR-----GPRGAMIFFRKGVKEIN---KQGKEVFYDYEEK----IN----QAVF-PGL--QG 240 (297)
Q Consensus 180 ~~~~~~~~D~~~~s~~K~l~-----gp~gG~i~~~~~~~~~~---~~g~~~~~~~~~~----~~----~~~~-~~~--~~ 240 (297)
..+ ++|++++|+|||+. ||++|+++.++++...+ ..|+......... +. ...+ .+. ..
T Consensus 208 ~~~---~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~ 284 (398)
T cd00613 208 GEY---GADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNIC 284 (398)
T ss_pred HHc---CCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccce
Confidence 333 78999999999981 24448888887643221 1122110000000 00 0000 011 12
Q ss_pred CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 241 GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 241 t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+.+.....+..++++.+.+. |++++.++.+++.+++.++|++++...
T Consensus 285 ~~~~~~~~~a~~~l~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~ 331 (398)
T cd00613 285 TGQALLALMAAMYIVYLGPE-GLKEIAERAHLNANYLAKRLKEVGGVL 331 (398)
T ss_pred ecHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 22344555556667777777 999999999999999999999887543
No 56
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.89 E-value=1.1e-21 Score=178.37 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc----CCCCeEEEecCCCCCcccccccccccccceee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL----KPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
..++++.+++++++++|++.+. .++.++|+.++..++.++. +++|+|++++.+|.+.... ++..|
T Consensus 57 ~~~~~~~~~~~la~~~g~~~~~---~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~--------~~~~g 125 (371)
T PRK13520 57 TAKLEEEAVEMLGELLHLPDAY---GYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKA--------ADMLG 125 (371)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC---eEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHH--------HHHcC
Confidence 4556677889999999987643 2444445568776666553 3589999998888764322 22233
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..++.++ .+ .++.+|++++++.+++ ++++|++ +.+| +|.+.|+++|.++|+++|+++++|++|+.+..+.....
T Consensus 126 ~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~ 201 (371)
T PRK13520 126 VELRRAP--LD-DDYRVDVKAVEDLIDD-NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDP 201 (371)
T ss_pred ceEEEec--CC-CCCcCCHHHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCC
Confidence 3344454 44 4578999999999987 7776665 4444 89999999999999999999999999987765432211
Q ss_pred --CC--CCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhc--ccC-----CCCCCCchHHHHH
Q 022463 182 --SP--FEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQA--VFP-----GLQGGPHNHTITG 249 (297)
Q Consensus 182 --~~--~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~-----~~~~t~~~~~~~a 249 (297)
.. ..++|++++|+|||+.+|.+ |+++.+++ ++.+.+... +.. ...||++...+++
T Consensus 202 ~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~ 268 (371)
T PRK13520 202 PNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDE-------------SYLDALAVDTPYLTSKKQATLTGTRSGAGVAA 268 (371)
T ss_pred CCccccCCCCceEEECCccccCccCCceEEEEcCH-------------HHHHhhcccCccccCCCCcceEeeccChHHHH
Confidence 11 12789999999999877665 76776553 122222100 000 1135666677889
Q ss_pred HHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 250 LAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 250 l~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+.++++.+.+. |++++.++...+++++.+.|+++
T Consensus 269 ~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~ 302 (371)
T PRK13520 269 TYAVMKYLGRE-GYRKVVERCMENTRWLAEELKER 302 (371)
T ss_pred HHHHHhhhcHh-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998877 99999999999999999999876
No 57
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.89 E-value=2.2e-21 Score=175.61 Aligned_cols=223 Identities=15% Similarity=0.118 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCC-hHHHHHHHHHhcCCCC---------------eEEEecCCCCCccc-c
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SPSNFQVYTALLKPHD---------------RIMALDLPHGGHLS-H 90 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG-~~~~~~~~~~~~~~gd---------------~Vl~~~~~~~~~~~-~ 90 (297)
.+++.+++++++++++|++. +++++| ++++..++.+++++|| +|+++. .|...+. +
T Consensus 43 ~~~~~~~~~~~~a~~~g~~~------~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~-~~~~~~~~~ 115 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVED------AVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPK-GHNVDYGAP 115 (363)
T ss_pred HHHHHHHHHHHHHHhhCCCe------EEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEEC-ccchhcCCc
Confidence 34666677799999999874 445555 4677778888999998 666654 3333221 1
Q ss_pred cccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE--cCCC-CCCcccHHHHHHHHHhcCCEEEEe
Q 022463 91 GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA--GASA-YARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 91 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~--~~~~-~G~~~~~~~i~~la~~~g~~livD 167 (297)
+ ...+.+.|..+ +.++. ++.+|++++++++++ +|+++++ +++| +|.+.|+++|.++|++||+++++|
T Consensus 116 ~----~~~~~~~g~~~--v~v~~---~~~~d~~~le~ai~~-~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD 185 (363)
T TIGR01437 116 V----ETMVRLGGGKV--VEAGY---ANECSAEQLEAAITE-KTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVD 185 (363)
T ss_pred h----HHHHHhcCCeE--EEEcC---CCCCCHHHHHHhcCh-hceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEE
Confidence 1 11223344333 43343 356999999999998 8997764 3556 688999999999999999999999
Q ss_pred hhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccC-CCCCCCchHH
Q 022463 168 MAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP-GLQGGPHNHT 246 (297)
Q Consensus 168 ~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~t~~~~~ 246 (297)
++|+.... ..... ++|++++|+||+|.||++|+++.+++ +.+.+...... ...-......
T Consensus 186 ~a~~~~~~--~~~~~---g~D~~~~S~~K~l~gp~~G~l~~~~~--------------~i~~~~~~~~~~~~~~~~~~~~ 246 (363)
T TIGR01437 186 AAAEEDLQ--KYYRL---GADLVIYSGAKAIEGPTSGLVLGKKK--------------YIEWVKLQSKGIGRAMKVGKEN 246 (363)
T ss_pred CCCCCchH--HHHHc---CCCEEEEeCCcccCCCceEEEEEcHH--------------HHHHHHhccCCCcceeccCHHH
Confidence 99962210 00112 68999999999999999999887663 22222111000 0000111244
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
++++.+|++++.+. +.+.+.++.+ ..+++.++|+++++++
T Consensus 247 ~~gl~aAl~~~~~~-~~~~~~~~~~-~~~~l~~~L~~i~g~~ 286 (363)
T TIGR01437 247 ILGLTAALEQYLST-GKESGAEMVA-KLTPFIEALNTLKGVS 286 (363)
T ss_pred HHHHHHHHHHHHcc-CcccHHHHHH-HHHHHHHHHhcCCCeE
Confidence 78888999999876 8777777666 4667999999988764
No 58
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.89 E-value=2.7e-21 Score=174.47 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEe-cCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~-~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
++.+.+++.+++++|+++++ ..+++ .+|+.++..++.+++.++|.|++....+.+.. ... .+...|..+..
T Consensus 31 ~~~~~~~~~la~~~~~~~~~--~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~----~a~~~g~~~~~ 102 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNH--TCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAK----ICEYLGIPHTD 102 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCC--cEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHH----HHHHcCCceEE
Confidence 55566779999999998643 13544 56667887788888888888776553322210 000 11222333434
Q ss_pred eecccCCCCCcCCHHHHHHHhhhc-CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC
Q 022463 109 MPYRLNESTGYIDYDQLEKSATLF-RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE 185 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~ 185 (297)
+ +.+ +++.+|++++++.++++ +++++++ ++++ +|...|+++|.++|++||+++|+|++|+.|..+.++..+
T Consensus 103 i--~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~--- 176 (355)
T TIGR03301 103 L--NFS-EYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEEL--- 176 (355)
T ss_pred E--ecC-CCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhc---
Confidence 4 344 45678999999999861 3445555 4444 799999999999999999999999999988877665554
Q ss_pred CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccc-hhhHHHHhhhccc-CCCCCCCchHHHHHHHHHHHHHhhhcC
Q 022463 186 YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEV-FYDYEEKINQAVF-PGLQGGPHNHTITGLAVALKQVCTLIT 262 (297)
Q Consensus 186 ~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-~~~~~t~~~~~~~al~~al~~~~~~~g 262 (297)
++|++++|++||++||.| |+++++++...+....... ..++...+..... .....+++...++++.++++.+.+..+
T Consensus 177 ~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~ 256 (355)
T TIGR03301 177 DVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGG 256 (355)
T ss_pred CccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc
Confidence 789999999999999988 9999998643221111000 0011111110000 112457888999999999999987723
Q ss_pred hhhHHHHhhhhHHHHHhhccCCC
Q 022463 263 FSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
+++..++.+++.+++.+.|+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~g 279 (355)
T TIGR03301 257 VPARIARYRRNRELLVDGLRALG 279 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 89899999999999999997763
No 59
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.88 E-value=2.5e-21 Score=173.51 Aligned_cols=244 Identities=19% Similarity=0.169 Sum_probs=181.6
Q ss_pred cccCCCCCCCCccCCCc-hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCc
Q 022463 9 TNKYSEGYPGARYYGGN-EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGH 87 (297)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~ 87 (297)
.++|+.|..++|...++ +...+|| +++|+++|.+.. ++|+||..+|.+++.++.+++|.|+.....|-|.
T Consensus 66 ~~~~g~g~~gsR~i~G~~~~h~~LE----~~lA~f~g~e~a-----l~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASi 136 (388)
T COG0156 66 IRRYGVGAGGSRLISGTSDLHVELE----EELADFLGAEAA-----LLFSSGFVANLGLLSALLKKGDLIFSDELNHASI 136 (388)
T ss_pred HHHhCCCCCCcCcccCCcHHHHHHH----HHHHHHhCCCcE-----EEEcccchhHHHHHHHhcCCCcEEEEechhhhhH
Confidence 45677788888866544 7788899 999999999864 9999999999999999999999999999988887
Q ss_pred ccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc--C---CcEEEE-c-CCCCCCcccHHHHHHHHHhc
Q 022463 88 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--R---PKLIVA-G-ASAYARLYDYERIRKVCNKQ 160 (297)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~---~~~v~~-~-~~~~G~~~~~~~i~~la~~~ 160 (297)
.. ++++.+++... +. ..|+++|++.+.+. . .++|+. + .|+.|.+.|+++|.+++++|
T Consensus 137 id--------G~rls~a~~~~--f~------HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky 200 (388)
T COG0156 137 ID--------GIRLSRAEVRR--FK------HNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKY 200 (388)
T ss_pred HH--------HHHhCCCcEEE--ec------CCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHh
Confidence 55 44455444322 22 35889999999762 2 456666 4 77789999999999999999
Q ss_pred CCEEEEehhhhcccccccC---C--CCC-CCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcc
Q 022463 161 KAIMLADMAHISGLVAAGV---I--PSP-FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV 234 (297)
Q Consensus 161 g~~livD~a~~~g~~~~~~---~--~~~-~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 234 (297)
+++++||+||++|.+.... . ..- ....|+++.+++|.|+ -.||++.++. ...+.+....
T Consensus 201 ~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~Gg~v~g~~--------------~~~d~L~~~a 265 (388)
T COG0156 201 GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSGGYIAGSA--------------ALIDYLRNRA 265 (388)
T ss_pred CcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccCceeeCcH--------------HHHHHHHHhC
Confidence 9999999999999876321 1 000 0146899999999984 6789999888 4455554443
Q ss_pred cCCC-CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCCC
Q 022463 235 FPGL-QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 295 (297)
Q Consensus 235 ~~~~-~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~ 295 (297)
.+.. +.+.+....++..++++.+.+. ...+++.+.+..++++.++...........||
T Consensus 266 r~~ifStalpP~~aaa~~~al~~l~~~---~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s~I 324 (388)
T COG0156 266 RPFIFSTALPPAVAAAALAALRILEEG---PERRERLQELAAFFRSLLKALGLVLLPSESPI 324 (388)
T ss_pred CceeccCCCCHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHhcCCccCCCCCCe
Confidence 4444 4455667777888899888744 66788888888888866666555433444444
No 60
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.88 E-value=2e-21 Score=175.26 Aligned_cols=232 Identities=16% Similarity=0.135 Sum_probs=153.9
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh-cCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.+...++| +.+++++|.+. .+++++|++++..++.++ +++||+|+++..+|.+...++. ..|
T Consensus 17 ~~~~~~~~----~~la~~~~~~~-----~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~--------~~g 79 (352)
T cd00616 17 GPKVREFE----KAFAEYLGVKY-----AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAIL--------LLG 79 (352)
T ss_pred CHHHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH--------HcC
Confidence 45667777 88999999753 366777777877788887 6899999999988887754433 223
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 183 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~ 183 (297)
.++ +.++.++.++.+|++++++.+++ ++++|++. +.+|...|+++|.++|+++|+++|+|++|+.|....+....
T Consensus 80 ~~~--~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~- 154 (352)
T cd00616 80 ATP--VFVDIDPDTYNIDPELIEAAITP-RTKAIIPV-HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVG- 154 (352)
T ss_pred CeE--EEEecCCCcCCcCHHHHHHhcCc-CCeEEEEE-CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcc-
Confidence 223 44455544688999999999976 89988883 24798999999999999999999999999988765432111
Q ss_pred CCCccEEEecCC--ccCCCCCceEEEEecC-chh--h-ccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 184 FEYADVVTTTTH--KSLRGPRGAMIFFRKG-VKE--I-NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 184 ~~~~D~~~~s~~--K~l~gp~gG~i~~~~~-~~~--~-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
...|+.++|+| |+++++.||+++++++ +.. + ...++... ... ... ....+.. ..+..+.+++...
T Consensus 155 -~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~----~~~~~~~--~~~~~~~aa~~~~ 225 (352)
T cd00616 155 -TFGDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDR-DRF-KYE----HEILGYN--YRLSEIQAAIGLA 225 (352)
T ss_pred -cCcceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCC-CCC-ccc----cceeeec--cCcCHHHHHHHHH
Confidence 13577777765 9997778888888753 211 1 11000000 000 000 0000000 0111222223223
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
... +++++.++.+++.+++.+.|++++.++
T Consensus 226 ~l~-~~~~~~~~~~~~~~~~~~~L~~~~g~~ 255 (352)
T cd00616 226 QLE-KLDEIIARRREIAERYKELLADLPGIR 255 (352)
T ss_pred HHH-hhHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 333 678888999999999999999988765
No 61
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.88 E-value=3.9e-22 Score=179.47 Aligned_cols=215 Identities=16% Similarity=0.109 Sum_probs=160.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCC-CCCCcceEEecCCh-HHHHHHHHHhcC------------C--CCeEEEecCCCC
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGS-PSNFQVYTALLK------------P--HDRIMALDLPHG 85 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~~v~~~sG~-~~~~~~~~~~~~------------~--gd~Vl~~~~~~~ 85 (297)
|+..+...++|+++++++++++|.+ .+. .+++++|+ .++..++.++.. + +++|+++..+|.
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~---~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~ 106 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDA---DGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV 106 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCC---CEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh
Confidence 5666778999999999999999986 322 25555555 677766666532 3 347888888888
Q ss_pred CcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc-----CCcEEEE-cCCC-CCCcccHHHHHHHHH
Q 022463 86 GHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVA-GASA-YARLYDYERIRKVCN 158 (297)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~-~~~~-~G~~~~~~~i~~la~ 158 (297)
+...... ..|..++.+ +.+ .++.+|++++++.+++. +|+++++ +++| +|.+.|+++|.++|+
T Consensus 107 ~~~~~~~--------~~g~~~~~v--~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~ 175 (345)
T cd06450 107 SVEKAAA--------YLDVKVRLV--PVD-EDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAE 175 (345)
T ss_pred HHHHHHH--------HHhcCeEEe--eeC-CCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHH
Confidence 7654332 223334344 455 34689999999999752 5677766 5555 899999999999999
Q ss_pred hcCCEEEEehhhhcccccccCCCC---CCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcc
Q 022463 159 KQKAIMLADMAHISGLVAAGVIPS---PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAV 234 (297)
Q Consensus 159 ~~g~~livD~a~~~g~~~~~~~~~---~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 234 (297)
++|+++|+|++|+.+..+...... ...++|++++|+|||+++|.| |+++.+
T Consensus 176 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~------------------------- 230 (345)
T cd06450 176 KYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------------------------- 230 (345)
T ss_pred HhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-------------------------
Confidence 999999999999988876432221 112689999999999999888 765522
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 235 FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 235 ~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
..++.++++.+... |++++.++...+++++.+.|++++.++
T Consensus 231 ------------~~~~~~~l~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~ 271 (345)
T cd06450 231 ------------ALKLWATLRRFGRD-GYGEHIDRIVDLAKYLAELIRADPGFE 271 (345)
T ss_pred ------------HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 45667778888777 999999999999999999999988754
No 62
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.88 E-value=1.3e-21 Score=165.99 Aligned_cols=255 Identities=17% Similarity=0.150 Sum_probs=183.1
Q ss_pred ccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHH-HHHHh--cCCCCeEEEecCCC
Q 022463 8 MTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ-VYTAL--LKPHDRIMALDLPH 84 (297)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~-~~~~~--~~~gd~Vl~~~~~~ 84 (297)
..+.|+++...+..-.... +..+-+..-.+++.++|+.+.+ ++++.++++|+. .+.+. .++|+.||+++..
T Consensus 55 a~deW~~~lirsw~~a~~~-W~~lp~~lgdklApLiGA~~~E----vvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~- 128 (407)
T COG3844 55 ATDEWGEGLIRSWNKAKAD-WFDLPERLGDKLAPLIGARAGE----VVVTDTTSINLFKVLAAALRPQEGRRVIVSEGD- 128 (407)
T ss_pred HHHHHHhhhhhhhcccCCc-hhhchhHHHHHhhhhhcCCCCc----eEEeCCcchHHHHHHHHHhccCCCceEEeecCC-
Confidence 3444555444343332333 3444555669999999998875 888888887765 33333 4568999997643
Q ss_pred CCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCC--CCCcccHHHHHHHHHhcCC
Q 022463 85 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA--YARLYDYERIRKVCNKQKA 162 (297)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~--~G~~~~~~~i~~la~~~g~ 162 (297)
++.+-.|..+. -+.+.+.. .+ -.+.+.++++++++++ ++.+|+++..| +|...++.+|..++|++|+
T Consensus 129 -~fpTdly~a~g-~~~~~~~~-------~~-~~~~~~P~~~~~~~~d-d~AvV~L~~V~y~TGql~dm~aiT~~AH~~ga 197 (407)
T COG3844 129 -NFPTDLYIAEG-LADLLGIG-------YD-LEGVIAPRALEEAITD-DVAVVLLSHVNYKTGQLLDMRAITALAHQHGA 197 (407)
T ss_pred -CCCcchhhhcc-hhhhhccc-------cc-ceeeeChHHHHHhhcc-ceEEEEeccccccccceeeHHHHHHHHHhcCc
Confidence 23222232211 12222211 11 2346678899999998 88888886555 6999999999999999999
Q ss_pred EEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCc--eEEEEecCchhh---ccCCccchhhHHHHhhhccc--
Q 022463 163 IMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG--AMIFFRKGVKEI---NKQGKEVFYDYEEKINQAVF-- 235 (297)
Q Consensus 163 ~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g--G~i~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~-- 235 (297)
+++.|-||++|.+|.+++.+ ++||-++|+||+|+|.+| +++++.++.+++ .+.||.+...-.. +...+.
T Consensus 198 lv~wDLAHsaGavp~~Lh~~---gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~-m~~~y~p~ 273 (407)
T COG3844 198 LVGWDLAHSAGAVPVDLHAA---GADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFA-MEEVYAPG 273 (407)
T ss_pred eEEeehhcccCCcceeeccc---CCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcch-hhhccCcC
Confidence 99999999999999999998 999999999999987555 899998887654 4557665422111 111111
Q ss_pred CC----CCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 236 PG----LQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 236 ~~----~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++ ..|++++.+++++..+|+.+.+. ++.+++++...|.++|.+-++..
T Consensus 274 ~ga~rf~~gt~~V~s~aal~~aLDifa~~-~i~~lR~kSlaLTd~fieLvEa~ 325 (407)
T COG3844 274 PGARRFLCGTQPVLSLAALEGALDIFADV-DITELRKKSLALTDYFIELVEAR 325 (407)
T ss_pred ccccceeeCCcchhhhHHHhhhhhhhhhc-CHHHHHHhhhHHHHHHHHHHHhc
Confidence 22 28999999999999999999999 99999999999999999877653
No 63
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.87 E-value=1.6e-21 Score=177.92 Aligned_cols=221 Identities=14% Similarity=0.082 Sum_probs=151.8
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +.+++++|.+. .++++||++++..++.+++++||+|+++...|++.+......... .|
T Consensus 59 ~~pt~~~Le----~~lA~l~G~~~-----al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~----~g 125 (386)
T PRK06767 59 GNPTVKLFE----ERMAVLEGGEE-----ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK----FM 125 (386)
T ss_pred CCcchHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh----cC
Confidence 456778888 99999999864 488999998877788888999999999987776665433221111 11
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+....+ + ..|++++++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+....++.
T Consensus 126 --i~~~~~--~----~~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~- 195 (386)
T PRK06767 126 --ITHSFC--D----METEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLE- 195 (386)
T ss_pred --eEEEEe--C----CCCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCchh-
Confidence 111111 1 2478999999987 8999999 7888 7999999999999999999999999987655443322
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++|+++|+. ||+++++++. .+.+.........+..+....+. ++..+.
T Consensus 196 ~---g~Div~~S~sK~l~g~g~~~gG~v~~~~~~--------------i~~~~~~~~~~~g~~~~~~~a~l---~~~~L~ 255 (386)
T PRK06767 196 L---GCDAVVHSATKYIGGHGDVVAGVTICKTRA--------------LAEKIRPMRKDIGGIMAPFDAWL---LLRGLK 255 (386)
T ss_pred c---CCcEEEecCcceecCCCCceeEEEEeChHH--------------HHHHHHHHHHHhCCCCCHHHHHH---HHcCCC
Confidence 1 78999999999998876 6888888742 22211100111111222222222 222222
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+....++..+++.++.+.|++.|.|+.+
T Consensus 256 ---tl~~r~~~~~~~a~~la~~L~~~p~v~~v 284 (386)
T PRK06767 256 ---TLAVRMDRHCDNAEKIVSFLKNHDAVEGV 284 (386)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 33456677788899999999999988753
No 64
>PRK07179 hypothetical protein; Provisional
Probab=99.87 E-value=6.5e-21 Score=175.44 Aligned_cols=221 Identities=14% Similarity=0.162 Sum_probs=157.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 100 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 100 (297)
+..+.+...++| +++++++|++. .+++++|+.+|..+++++..+||.|++...+|.+..... .
T Consensus 94 ~~~~~~~~~~le----~~la~~~g~~~-----~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~--------~ 156 (407)
T PRK07179 94 FLHDDSPKPQFE----KKLAAFTGFES-----CLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGV--------R 156 (407)
T ss_pred ccCCchHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHH--------H
Confidence 333445667777 89999999865 377778888998899999999999999888887775322 1
Q ss_pred eeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 101 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 101 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
..|.. .++++ ..|++++++.+++.++++|++ +++| +|.+.|+++|.++|+++|+++|+|++|+.|.....
T Consensus 157 ~~g~~--~~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~ 228 (407)
T PRK07179 157 AAGAQ--AHPFR------HNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQ 228 (407)
T ss_pred HCCCe--EEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCC
Confidence 22221 22222 258999999998645778878 5555 79999999999999999999999999987754321
Q ss_pred C----CCCCC-CCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCCCchHHHHHHHH
Q 022463 179 V----IPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAV 252 (297)
Q Consensus 179 ~----~~~~~-~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~al~~ 252 (297)
. ..... ..+|+++.|++|+++ +++|+++++++ +.+.+.....+.. .++.+...++++.+
T Consensus 229 g~g~~~~~~~~~~vdi~~~S~sK~~g-~~~G~l~~~~~--------------~~~~~~~~~~~~~~~~t~~~~~~aa~~a 293 (407)
T PRK07179 229 GAGLVAELGLTSRVHFITASLAKAFA-GRAGIITCPRE--------------LAEYVPFVSYPAIFSSTLLPHEIAGLEA 293 (407)
T ss_pred CCchHHhcCCCCCCCEEEeechHhhh-ccCeEEEeCHH--------------HHHHHHHhCcCeeeCCCCCHHHHHHHHH
Confidence 1 01111 157999999999985 46899988773 3333333222322 45666677777778
Q ss_pred HHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 253 ALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 253 al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+++.+... +..+++.+++.+++.+.|+++
T Consensus 294 al~~~~~~---~~~~~~l~~~~~~l~~~L~~~ 322 (407)
T PRK07179 294 TLEVIESA---DDRRARLHANARFLREGLSEL 322 (407)
T ss_pred HHHHHhcC---HHHHHHHHHHHHHHHHHHHHc
Confidence 88877533 567788888899999988876
No 65
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.87 E-value=4.1e-21 Score=174.86 Aligned_cols=220 Identities=15% Similarity=0.089 Sum_probs=151.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +.+++++|.+. .+++++|++++..++.+++++||+|+++...|++....+..+...++.
T Consensus 51 ~np~~~~lE----~~lA~l~g~~~-----~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~--- 118 (385)
T PRK08574 51 ENPTLRPLE----EALAKLEGGVD-----ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVK--- 118 (385)
T ss_pred CCccHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcE---
Confidence 457788888 99999999864 378888888887788889999999999998888876544322222222
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+ .. . ..|++++++.+++.+|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.+....++ .
T Consensus 119 --v--~~--~-----~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~ 186 (385)
T PRK08574 119 --V--VL--A-----YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-R 186 (385)
T ss_pred --E--EE--E-----CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-h
Confidence 2 11 1 236789999987557999999 6777 799999999999999999999999999877544332 2
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++|+++||. ||+++++++ ++.+++...... .....+....+. ++..+.
T Consensus 187 ~---GaDivv~S~sK~l~g~~d~~gG~vi~~~~-------------~~~~~~~~~~~~-~g~~~~p~~a~l---~l~~l~ 246 (385)
T PRK08574 187 H---GADFVVHSLTKYIAGHNDVVGGVAVAWSG-------------EFLEELWEWRRR-LGTIMQPFEAYL---VLRGLK 246 (385)
T ss_pred h---CCcEEEeeCceeecCCCCceeEEEEECcH-------------HHHHHHHHHHHh-cCCCCCHHHHHH---HHcccC
Confidence 2 79999999999998874 575666553 233332211110 111222222222 222222
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+....+++.+.+.++.+.|++.|.|+.+
T Consensus 247 ---tL~~R~~~~~~na~~la~~L~~~p~v~~V 275 (385)
T PRK08574 247 ---TLEVRFERQCRNAMAIAEFLSEHPKVAEV 275 (385)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHcCCCcCEE
Confidence 34455566667888888888898888754
No 66
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.87 E-value=6.5e-21 Score=173.97 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=152.1
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +.+++++|++. .++++||++++..++.+++++||+|+++...|++.+...... +...|
T Consensus 57 ~~p~~~~le----~~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~----~~~~G 123 (391)
T TIGR01328 57 GNPTVSNLE----GRIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHA----LTKFG 123 (391)
T ss_pred CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHH----HhcCC
Confidence 456778888 99999999976 388889998887788888999999999987776654433211 11123
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ ..++.+ |++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+.......
T Consensus 124 ~~~--~~vd~~------d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~- 193 (391)
T TIGR01328 124 IQV--DFINMA------IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVA- 193 (391)
T ss_pred eEE--EEECCC------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCchh-
Confidence 223 332332 78999999987 8999999 7888 7999999999999999999999999988765432221
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCC-CCchHHHHHHHHHHHHH
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG-GPHNHTITGLAVALKQV 257 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~al~~al~~~ 257 (297)
. ++|++++|++|+++++. ||+++.+++ +.+++.........| ..+....+ .++..+
T Consensus 194 ~---g~Divv~S~sK~lgg~g~~~gG~v~~~~~--------------li~~l~~~~~~~~~g~~l~~~~a~---l~l~~L 253 (391)
T TIGR01328 194 L---GVDVVVHSATKYIGGHGDVVAGLICGKAE--------------LLQQIRMVGIKDMTGSVISPFDAW---LILRGL 253 (391)
T ss_pred c---CCCEEEccccccccCCCCceEEEEEcCHH--------------HHHHHHHHHHHhCCCCCCCcHHHH---HHHhCc
Confidence 1 89999999999998765 577776663 333332111111111 22212221 223323
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
. .+....+++.+.+.++.+.|++.|.|+.+
T Consensus 254 ~---tl~~r~~~~~~na~~la~~L~~~p~v~~v 283 (391)
T TIGR01328 254 K---TLNIRMKRHSENAMKVAEYLKSHPAVEKV 283 (391)
T ss_pred C---cHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 2 34556667777888888889998887754
No 67
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.87 E-value=3.1e-21 Score=173.46 Aligned_cols=232 Identities=12% Similarity=0.039 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecC--ChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLS--GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~s--G~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
.++-+.+++.++++|+++.++ .+++++ ||.++.+++.+++++||++++......+... .. -++..|. +
T Consensus 36 ~~~~~~~~~~l~~l~~~~~~~---~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~--~~----~a~~~g~-~ 105 (349)
T TIGR01364 36 EAVANEAESDLRELLNIPDNY---EVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKA--AK----EAKKYGV-V 105 (349)
T ss_pred HHHHHHHHHHHHHHhCCCCCc---eEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHH--HH----HHHHhCC-c
Confidence 355567889999999984332 255544 5568888999999999999987644333211 11 1222232 2
Q ss_pred EeeecccC-CCCCcCCHHHHHHHhhhcCCcEEEE-c-CCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC
Q 022463 107 ETMPYRLN-ESTGYIDYDQLEKSATLFRPKLIVA-G-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 183 (297)
Q Consensus 107 ~~v~~~~~-~~~~~~d~~~l~~~l~~~~~~~v~~-~-~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~ 183 (297)
..+..+-. +....+|+++++ +++ ++++|.+ | .+++|...| ++++.++++++||+++++|..++++..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~~~- 176 (349)
T TIGR01364 106 NVVASGKEGNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVSKF- 176 (349)
T ss_pred EEEeccccCCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHHHc-
Confidence 22321101 122355666555 344 7899988 4 666898766 7777889999999999999999988765
Q ss_pred CCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcC
Q 022463 184 FEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLIT 262 (297)
Q Consensus 184 ~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g 262 (297)
|++++|+||++ ||.| |++++++++..+.... .. .+.+...........+||++..++++.+||+++.++.|
T Consensus 177 ----d~~~~ssqK~l-gP~Glg~l~~s~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG 248 (349)
T TIGR01364 177 ----GLIYAGAQKNI-GPAGLTVVIVRKDLLGRASRI-TP--SMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGG 248 (349)
T ss_pred ----cEEEEeccccc-CCCceEEEEECHHHHhhcccC-CC--CcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Confidence 79999999987 6999 9999999764331111 10 11111100000122579999999999999999988735
Q ss_pred hhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 263 FSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
++.++++++.+.+++++.|++++++
T Consensus 249 ~e~i~~r~~~l~~~l~~~l~~~~gl 273 (349)
T TIGR01364 249 VKAIEKRNQAKAQLLYDTIDNSNGF 273 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9999999999999999999999854
No 68
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.87 E-value=7e-22 Score=178.51 Aligned_cols=231 Identities=14% Similarity=0.100 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCC--hHHHHHHHHHhcC---CCCeEEEecCCCCCcccccccccccccce
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG--SPSNFQVYTALLK---PHDRIMALDLPHGGHLSHGYQTDTKKISA 101 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG--~~~~~~~~~~~~~---~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 101 (297)
-..++-+++|+.++++++++.++ .++|++| |.++..++.++++ ++|+|++....|.. ....++.++
T Consensus 41 ~~~~~~~~~r~~l~~l~~~~~~~---~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g~~~~~~----~~~a~~~g~-- 111 (355)
T cd00611 41 DFEAIVNEAESDLRELLNIPDNY---KVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAKA----AKEAKRYGG-- 111 (355)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHH----HHHHHhcCC--
Confidence 33455667889999999984332 3777655 4466568888877 55666543221111 001122232
Q ss_pred eeeeeEeeecccCCCCCcC-C-HHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccc
Q 022463 102 VSIFFETMPYRLNESTGYI-D-YDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~~~~-d-~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~ 177 (297)
.+..++ .+ +++.+ + ++..+..+++ ++++|.+ |.+| +|...+ ++++.||++++||++|++|..++
T Consensus 112 ---~~~~~~--~~-~~g~~~~~~~~~~~~~~~-~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~i 179 (355)
T cd00611 112 ---VVVIVA--AK-EEGKYTKIPDVETWDLAP-DAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPI 179 (355)
T ss_pred ---CcEEEe--cc-cccCCCCCCCHhhcCCCC-CCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCC
Confidence 244443 23 22212 3 2223334555 8999988 5444 787632 45566999999999999999999
Q ss_pred cCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 022463 178 GVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 256 (297)
Q Consensus 178 ~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~ 256 (297)
++..+ |++++|+||++ ||.| |+++++++...+.........++..... ..+ ..+||++..++++.+||++
T Consensus 180 dv~~~-----~~~~ss~~K~l-GP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~Tpn~~~i~~L~aal~~ 250 (355)
T cd00611 180 DVSKF-----GVIYAGAQKNL-GPAGVTVVIVRKDLLGKARKITPSMLNYKTHAD--NNS-LYNTPPTFAIYMMGLVLKW 250 (355)
T ss_pred CHHHh-----CEEEeeccccc-CCCceEEEEECHHHHhhcccCCCCcccHHHHHh--cCC-CCCCChHHHHHHHHHHHHH
Confidence 98775 45567799976 7999 9999999764321100000001111011 111 2679999999999999999
Q ss_pred HhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 257 VCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 257 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
+.++.|++.++++++.+++++++.|++++++
T Consensus 251 l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl 281 (355)
T cd00611 251 LKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF 281 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9877359999999999999999999999765
No 69
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.87 E-value=1.4e-20 Score=173.46 Aligned_cols=242 Identities=14% Similarity=0.124 Sum_probs=175.1
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh---cC--C---C------CeEEEecCCCCCccc
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---LK--P---H------DRIMALDLPHGGHLS 89 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~---~~--~---g------d~Vl~~~~~~~~~~~ 89 (297)
..+...++|+.+-.+++++++.+.+. ...+++.||.+|+.++.+. .. . + -+|+++...|.|+..
T Consensus 95 ~~p~a~~~E~~~v~~l~~l~~~~~~~--~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~K 172 (460)
T COG0076 95 ESPAAAELEERVVNMLSDLLGAPEEA--SGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEK 172 (460)
T ss_pred cChhHHHHHHHHHHHHHHHhCCCCCC--ceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHH
Confidence 34678999999999999999996443 2455555556777655443 11 1 1 168998888888865
Q ss_pred ccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCc--EEEE-cCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 90 HGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK--LIVA-GASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 90 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~--~v~~-~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
... +.|.+.+.++ .++.+..+|++++++.|++.... +|.+ +.+.+|.+.|+++|.++|+++++++||
T Consensus 173 aa~--------~lG~~~~~v~--~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHV 242 (460)
T COG0076 173 AAR--------YLGLGLRRVP--TVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHV 242 (460)
T ss_pred HHH--------HhCCCceeEE--eccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEE
Confidence 444 4444454454 34337899999999999983333 3333 566689999999999999999999999
Q ss_pred ehhhhcccccccCCCCC--C--CCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccC-----
Q 022463 167 DMAHISGLVAAGVIPSP--F--EYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP----- 236 (297)
Q Consensus 167 D~a~~~g~~~~~~~~~~--~--~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----- 236 (297)
|+|.+....++.-.... + .++|.++.++|||+..|.| |+++++++...+ -.......+.+
T Consensus 243 DAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~----------~~~~~~~~yl~~~~~~ 312 (460)
T COG0076 243 DAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALR----------RILIFADYYLPGGGIP 312 (460)
T ss_pred EccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhh----------hhhhcccccCCCCCcC
Confidence 99977777766544433 2 2799999999999999999 999999863111 00001111122
Q ss_pred C--CCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 237 G--LQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 237 ~--~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
. ..++.+....+++++.+..+..+ |+.++.++..++++++.++|++.+.++
T Consensus 313 ~~ti~~sr~~~~~~~~~~~l~~lG~e-Gy~~l~~~~~~~a~~la~~l~~~~~~e 365 (460)
T COG0076 313 NFTILGSRPGRQALALYANLRRLGRE-GYRKLLDRTLELARYLAEELEKLGDFE 365 (460)
T ss_pred ceeEeeccchHHHHHHHHHHHHhCHh-HHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 1 14566666888889999999877 999999999999999999999997544
No 70
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.87 E-value=3e-21 Score=174.94 Aligned_cols=219 Identities=9% Similarity=-0.015 Sum_probs=155.8
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-cccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~ 102 (297)
+++..+.+| +.++++-|.+. .+++.||++++.+++.+++++||+|+++...|++....... +...+++
T Consensus 60 ~nPt~~~le----~~la~LEg~~~-----a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~-- 128 (395)
T PRK08114 60 GTLTHFSLQ----EAMCELEGGAG-----CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT-- 128 (395)
T ss_pred CChhHHHHH----HHHHHHhCCCe-----EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--
Confidence 678899999 99999999875 48889999887778888999999999998777766544321 2223333
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcC--CEEEEehhhhccccccc
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQK--AIMLADMAHISGLVAAG 178 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g--~~livD~a~~~g~~~~~ 178 (297)
+..+ + ..|.+.+++++++ +|++|++ +++| ++.+.|+++|+++||++| ++++||++++.+.. .+
T Consensus 129 ---v~~v----d----~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~ 195 (395)
T PRK08114 129 ---TTWF----D----PLIGADIAKLIQP-NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FK 195 (395)
T ss_pred ---EEEE----C----CCCHHHHHHhcCC-CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cC
Confidence 2222 2 2467899999987 8999999 7888 789999999999999985 99999999998876 66
Q ss_pred CCCCCCCCccEEEecCCccCCCCC--c-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHH
Q 022463 179 VIPSPFEYADVVTTTTHKSLRGPR--G-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 255 (297)
Q Consensus 179 ~~~~~~~~~D~~~~s~~K~l~gp~--g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~ 255 (297)
...+ |+|++++|.+|||+|+. + |+++.+++ ..+.+..... ......+....+-+..+|
T Consensus 196 pl~~---GaDivv~S~tKyl~Ghsdv~~G~v~~~~~--------------~~~~l~~~~~-~~G~~~~p~~a~l~~rgl- 256 (395)
T PRK08114 196 ALDF---GIDISIQAGTKYLVGHSDAMIGTAVANAR--------------CWEQLRENSY-LMGQMVDADTAYMTSRGL- 256 (395)
T ss_pred HHHc---CCcEEEEcCcccccCCCcceeEEEEcCHH--------------HHHHHHHHHH-hccCCCCHHHHHHHHcCC-
Confidence 5555 99999999999999985 3 76665552 2222221110 111122222222221222
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
..+.-+.+++.+.+..+.+.|++.|.|+.+
T Consensus 257 -----~TL~lR~~~~~~na~~va~~L~~hp~V~~V 286 (395)
T PRK08114 257 -----RTLGVRLRQHEESSLKVAEWLAEHPEVARV 286 (395)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHcCCCEeEE
Confidence 244566677778888888889999888764
No 71
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.86 E-value=8.5e-21 Score=173.70 Aligned_cols=221 Identities=17% Similarity=0.137 Sum_probs=153.7
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +.+++++|.+. .++++||++++..++.+++++||+|+++...|++.+...... +...|
T Consensus 68 ~~p~~~~le----~~lA~l~g~~~-----al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~----~~~~G 134 (403)
T PRK07810 68 GNPTVSMFE----ERLRLIEGAEA-----CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEI----LPRWG 134 (403)
T ss_pred CCchHHHHH----HHHHHHhCCCc-----EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHH----HHHcC
Confidence 456678888 99999999875 489999998887788888999999999887776654433211 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ +.++. .|++++++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+....++ .
T Consensus 135 ~~v--~~vd~------~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~-~ 204 (403)
T PRK07810 135 VET--VFVDG------EDLSQWEEALSV-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGL-P 204 (403)
T ss_pred cEE--EEECC------CCHHHHHHhcCc-CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChh-h
Confidence 223 33222 388999999987 8999999 7888 799999999999999999999999999877654332 2
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++|+++|.. ||+++++++. ....+.... ......++....+.+..+|+
T Consensus 205 ~---gaDivv~S~tK~l~g~g~~~gG~v~~~~~~-------------~~~~l~~~~-~~~g~~~s~~~a~l~l~~L~--- 264 (403)
T PRK07810 205 L---GADVVVYSGTKHIDGQGRVLGGAILGDREY-------------IDGPVQKLM-RHTGPALSAFNAWVLLKGLE--- 264 (403)
T ss_pred c---CCcEEEccCCceecCCcCceeEEEEeChHH-------------HHHHHHHHH-HHhCCCCCHHHHHHHHhccC---
Confidence 2 79999999999998755 5888877642 111121110 01111223333333323333
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+..+.+++.+.+.++.+.|++.|.|+.+
T Consensus 265 ---tl~~R~~~~~~~a~~~a~~L~~~p~v~~V 293 (403)
T PRK07810 265 ---TLALRVRHSNASALRIAEFLEGHPAVRWV 293 (403)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHhcCCCccEE
Confidence 44566677777888888888888888765
No 72
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.86 E-value=1.4e-20 Score=172.49 Aligned_cols=221 Identities=14% Similarity=0.104 Sum_probs=148.4
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.++..+.+| +.+++++|+++ .++++||++++..++.++++|||+|+++...|++.+..... .+...|
T Consensus 63 ~~p~~~~le----~~lA~l~g~~~-----~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~----~~~~~G 129 (403)
T PRK07503 63 SNPTLALLE----QRMASLEGGEA-----AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHH----GLGEFG 129 (403)
T ss_pred CCchHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHH----HHhhCC
Confidence 446677888 99999999976 38889999877767888899999999988766554332211 111123
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
++.+.++. .|++.+++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+.....+ .
T Consensus 130 --~~v~~vd~------~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l-~ 199 (403)
T PRK07503 130 --VTVRHVDL------TDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL-E 199 (403)
T ss_pred --EEEEEeCC------CCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-h
Confidence 22233232 278999999987 8999999 7888 799999999999999999999999999866432222 1
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCC-CCchHHHHHHHHHHHHH
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG-GPHNHTITGLAVALKQV 257 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~al~~al~~~ 257 (297)
. ++|++++|++|+++|+. ||+++.++ ++.+++.........| ..+....+. ++..+
T Consensus 200 ~---g~Di~v~S~tK~l~g~gd~~gG~v~~~~--------------~l~~~l~~~~~~~~~g~~~s~~~a~l---~l~~L 259 (403)
T PRK07503 200 L---GADLVVHSATKYLGGHGDITAGLVVGGK--------------ALADRIRLEGLKDMTGAVMSPFDAFL---LMRGL 259 (403)
T ss_pred h---CCCEEEccccccccCCCceeEEEEEcCH--------------HHHHHHHhhhHHhCcCCCCCHHHHHH---HHcCc
Confidence 2 78999999999998865 57777555 3333332110111111 222222222 22222
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
. .++...+++.+.+..+.+.|++.|.|+.+
T Consensus 260 ~---tl~~r~~~~~~na~~~a~~L~~~p~v~~V 289 (403)
T PRK07503 260 K---TLALRMDRHCASAQAVAEWLARHPAVELV 289 (403)
T ss_pred c---hHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 2 33444555667788888888888887755
No 73
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.86 E-value=4.1e-21 Score=173.44 Aligned_cols=231 Identities=11% Similarity=0.090 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEec--CChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSL--SGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~--sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
.++-+.+++.++++++++.++ .++++ ||+.++.+++.+++.+||++++......+... ..+ ++..|..
T Consensus 47 ~~~~~~~~~~l~~l~~~~~~~---~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~--~~~----a~~~g~~- 116 (360)
T PRK05355 47 EAVAEEAEADLRELLNIPDNY---KVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKA--IKE----AKKYGEV- 116 (360)
T ss_pred HHHHHHHHHHHHHHhCCCCCc---EEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHH--HHH----HHHhCCc-
Confidence 466667889999999984322 25554 44468888999999999998887643222211 111 1112211
Q ss_pred EeeecccCCCCCcCCHHHHHH-HhhhcCCcEEEE-c-CCCCCCcc-cHHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEK-SATLFRPKLIVA-G-ASAYARLY-DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~-~l~~~~~~~v~~-~-~~~~G~~~-~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
..+. .+...+..+..++++ .+++ ++++|.+ | .+++|... |+++| +|++++||+++++|..++++..+
T Consensus 117 ~~~~--~~~~~g~~~~~~~~~~~l~~-~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~~ 187 (360)
T PRK05355 117 NVAA--SSEDDGFTYIPPLDEWQLSD-DAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSKF 187 (360)
T ss_pred eEEe--cccccCCCCCCChhhccCCC-CCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHHc
Confidence 2222 221134444445555 6766 7999988 4 66689887 77766 89999999999999999988765
Q ss_pred CCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 183 PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
|++++|+||++ ||.| |++++++++..+.........++....... ...+||++..++++.+||+++.++.
T Consensus 188 -----d~~~~ssqK~l-gP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~---~~~~Tp~~~~i~aL~~aL~~i~~~g 258 (360)
T PRK05355 188 -----GLIYAGAQKNI-GPAGLTIVIVREDLLGRALPSIPSMLDYKTHADND---SMYNTPPTFAIYLAGLVFKWLKEQG 258 (360)
T ss_pred -----cEEEEeccccc-cCCceEEEEECHHHHhhcccCCChHHHHHHHHhcC---CccCCCcHHHHHHHHHHHHHHHHcc
Confidence 79999999987 6999 999999986433111001111122111111 2258999999999999999998764
Q ss_pred ChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
|+++++++++.+++++++.|++++.+
T Consensus 259 G~e~i~~r~~~l~~~l~~~l~~~~~~ 284 (360)
T PRK05355 259 GVAAMEKRNQEKAALLYDAIDSSDFY 284 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 69999999999999999999998843
No 74
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.86 E-value=2e-20 Score=184.57 Aligned_cols=236 Identities=12% Similarity=0.023 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-----HHHHHHHHhcCC-CC----eEEEecCCCCCccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-----SNFQVYTALLKP-HD----RIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-----~~~~~~~~~~~~-gd----~Vl~~~~~~~~~~~~~~~~~ 95 (297)
+...++-.++++++++++|++. |.++++++ ++..+++++.++ || +|+++..+|+++..++..
T Consensus 564 ~g~~~~~~~~r~~la~i~g~~~------v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~-- 635 (993)
T PLN02414 564 QGYQEMFEDLGDLLCEITGFDS------FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAM-- 635 (993)
T ss_pred HHHHHHHHHHHHHHHHHhCCCe------EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHH--
Confidence 4455555677899999999954 66655543 555688888766 88 899999999999877763
Q ss_pred ccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE-cCCCC-CCcccHHHHHHHHHhcCCEEEEehhhh
Q 022463 96 TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA-GASAY-ARLYDYERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~-~~~~~-G~~~~~~~i~~la~~~g~~livD~a~~ 171 (297)
.|.+++.+ +.+ +++.+|+++|++++++ .++++|++ +++|+ |...|+++|.++||++|+++++|++|.
T Consensus 636 ------~G~~vv~v--~~d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~ 706 (993)
T PLN02414 636 ------CGMKIVVV--GTD-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANM 706 (993)
T ss_pred ------CCCEEEEe--ccC-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCH
Confidence 23334344 566 6789999999999985 26788888 78885 577889999999999999999999999
Q ss_pred cccccc-cCCCCCCCCccEEEecCCccCCCCC-----c-eEEEEecCchhhccCCcc-chh-hHHHHhhhcccCCCCCCC
Q 022463 172 SGLVAA-GVIPSPFEYADVVTTTTHKSLRGPR-----G-AMIFFRKGVKEINKQGKE-VFY-DYEEKINQAVFPGLQGGP 242 (297)
Q Consensus 172 ~g~~~~-~~~~~~~~~~D~~~~s~~K~l~gp~-----g-G~i~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~t~ 242 (297)
.+.... ..... ++|++++|.||+|++|. | |++.+++.+. +.+-|+. +.. .+ +.... +...|+.
T Consensus 707 ~a~~~l~~p~~~---GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~-p~lPg~~v~~~~~~---~~r~~-~s~iGt~ 778 (993)
T PLN02414 707 NAQVGLTSPGFI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA-PFLPSHPVVPTGGI---PRPEK-TQPLGTI 778 (993)
T ss_pred HhccCcCCcccc---CCCEEEecCCccCCcCcccCCCCeeeEEEchhhc-ccCCCCccccCCCc---ccccC-CCCcCCc
Confidence 887443 32344 89999999999998655 4 7888887542 1111211 000 11 11111 1112342
Q ss_pred c---hHHHHHHHHHHHHHhhh--cChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 243 H---NHTITGLAVALKQVCTL--ITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 243 ~---~~~~~al~~al~~~~~~--~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+ +.....+..|+.++... +|+.++.++...+++|+.++|++...
T Consensus 779 ~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~ 827 (993)
T PLN02414 779 SAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYP 827 (993)
T ss_pred cchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 2 22224444455555443 15556688999999999999977443
No 75
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.86 E-value=3.4e-20 Score=169.75 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhc--C-CCCeEEEecCCCCCcccccccccccccceee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALL--K-PHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~--~-~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
...+.....+.+++++|++...+ .+++++|| .++..++.++- + +||+|+++..+|.+...+ +.+.|
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~--a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kA--------i~~~G 172 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKS--AFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKA--------ISTAG 172 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCE--EEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHH--------HHHcC
Confidence 44555555599999999983221 35566666 35544555542 2 689999999888887654 34555
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEE-cCCCC--CCcccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA-GASAY--ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~-~~~~~--G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
.+.+.++...+++++.+|+++|+++|++. ++.++++ +++++ |.+.|+++|.++|++||+++|+|+||+.+.....
T Consensus 173 ~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~ 252 (444)
T TIGR03531 173 FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYM 252 (444)
T ss_pred CeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhh
Confidence 44555543245578999999999999862 2344444 34444 4789999999999999999999999987553321
Q ss_pred -C--CCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHH
Q 022463 179 -V--IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 254 (297)
Q Consensus 179 -~--~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al 254 (297)
. .......+|++++|+||++..|.+ |+++++++ ++.+.+... .++.. .+.+. ..++.++
T Consensus 253 ~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~-------------el~~~i~~~-y~g~~--~~s~~-~~~~~~l 315 (444)
T TIGR03531 253 ELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDE-------------NFIQEISKS-YPGRA--SASPS-LDVLITL 315 (444)
T ss_pred hhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCH-------------HHHHHHHHh-ccCCC--CChHH-HHHHHHH
Confidence 1 111111479999999999988876 66667554 344444433 22221 12233 3345555
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhccCCC-----CcccccCCCC
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQNNSE-----NIEEDKGRPC 295 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~-----~~~~~~g~~~ 295 (297)
..+... +++++.++..++++++.+.|+++. .+-+.+.+||
T Consensus 316 l~~G~~-g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~i 360 (444)
T TIGR03531 316 LSLGSK-GYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPI 360 (444)
T ss_pred HHhCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCce
Confidence 566666 999999999999999999998874 3555667775
No 76
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.86 E-value=1.3e-20 Score=169.82 Aligned_cols=217 Identities=16% Similarity=0.072 Sum_probs=152.8
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
.+...+++ +.++++++++. .+++++|++++.+++++++++||+|+++..+|++....+. ..|.
T Consensus 45 ~~~~~~l~----~~la~~~~~~~-----~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~--------~~g~ 107 (349)
T cd06454 45 SDLHEELE----EELAEFHGKEA-----ALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIR--------LSGA 107 (349)
T ss_pred chHHHHHH----HHHHHHhCCCC-----EEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHH--------HcCC
Confidence 44455555 88999999864 3888889888887788889999999999888777643322 2232
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhc----CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLF----RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~----~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
.+..+ + .+|++++++.+++. +++++++ +++| +|...|+++|.++|+++|+++|+|++|+.|..+..
T Consensus 108 ~~~~~--~------~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~ 179 (349)
T cd06454 108 KKRIF--K------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPH 179 (349)
T ss_pred ceEEe--c------CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence 23222 2 24778888888752 4667776 5555 79999999999999999999999999987765421
Q ss_pred C-----CCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCC-CCCCCchHHHHHHHH
Q 022463 179 V-----IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG-LQGGPHNHTITGLAV 252 (297)
Q Consensus 179 ~-----~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~al~~ 252 (297)
. ......+.|++++|+||+++. .||+++.+++ +.+.+.....+. ..++.+...++++.+
T Consensus 180 ~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (349)
T cd06454 180 GRGVEEFGGLTDDVDIIMGTLGKAFGA-VGGYIAGSKE--------------LIDYLRSYARGFIFSTSLPPAVAAAALA 244 (349)
T ss_pred CCChhhhccccccCcEEEeechhhhcc-cCCEEECCHH--------------HHHHHHHhchhhhccCCCCHHHHHHHHH
Confidence 1 010112689999999998854 6788887763 333333221111 134566777888888
Q ss_pred HHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 253 ALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 253 al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+++.+.+ .+.++++..++.+++.+.|++.
T Consensus 245 ~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~ 273 (349)
T cd06454 245 ALEVLQG---GPERRERLQENVRYLRRGLKEL 273 (349)
T ss_pred HHHHHhc---CHHHHHHHHHHHHHHHHHHHhc
Confidence 8987764 4667888888999999888775
No 77
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.86 E-value=1.4e-20 Score=173.37 Aligned_cols=239 Identities=13% Similarity=0.062 Sum_probs=157.3
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-cccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~ 102 (297)
+++..+++| +.++++.|+++. +++.||++++..++.+++++||+|+++..+|++....... +.+.+
T Consensus 62 ~~p~~~~le----~~lA~l~g~~~a-----v~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~G---- 128 (433)
T PRK08134 62 SNPTVAVLE----ERVAALEGGVGA-----IATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFG---- 128 (433)
T ss_pred cChHHHHHH----HHHHHHhCCCcE-----EEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCC----
Confidence 457788888 999999998763 8888888877667888899999999999988876543321 12223
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
++++.++.+ |++++++.|++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++|+.+....++
T Consensus 129 ---i~v~~vd~~------d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl- 197 (433)
T PRK08134 129 ---IETTFVKPG------DIDGWRAAIRP-NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF- 197 (433)
T ss_pred ---eEEEEECCC------CHHHHHHhcCC-CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-
Confidence 223333332 79999999998 9999998 7777 789999999999999999999999999988765433
Q ss_pred CCCCCCccEEEecCCccCCCCCc---eEEEEecCch---------hh-ccCCcc--chhh------HHHHhhhcccCCCC
Q 022463 181 PSPFEYADVVTTTTHKSLRGPRG---AMIFFRKGVK---------EI-NKQGKE--VFYD------YEEKINQAVFPGLQ 239 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~~~~---------~~-~~~g~~--~~~~------~~~~~~~~~~~~~~ 239 (297)
.. ++|++++|.|||++|+.. |+++.+.... .. ...++. .+.+ +..+..........
T Consensus 198 ~~---GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G 274 (433)
T PRK08134 198 EH---GADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFG 274 (433)
T ss_pred hc---CCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcC
Confidence 33 899999999999977663 4444332211 00 011111 0000 00000000000111
Q ss_pred CCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCCCC
Q 022463 240 GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPCV 296 (297)
Q Consensus 240 ~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~~ 296 (297)
...+....+ + .+.....++...+++.+.+.++.+.|++.|.|+.+ ..|.+
T Consensus 275 ~~ls~~~A~-----l-~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V-~yP~l 324 (433)
T PRK08134 275 ACLSPMNAW-----Q-LLQGIETLPLRMERHVANTRKVVAFLASHPAVARV-AHPEL 324 (433)
T ss_pred CCCCHHHHH-----H-HhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEE-ECCCC
Confidence 112212111 1 22222356777888888999999999999998876 46654
No 78
>PRK05968 hypothetical protein; Provisional
Probab=99.86 E-value=1.1e-20 Score=172.47 Aligned_cols=220 Identities=14% Similarity=0.076 Sum_probs=151.6
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +++++++|++. .++++||++++..++.++++|||+|+++...|++++..+... +...|
T Consensus 61 ~~p~~~~le----~~lA~l~g~~~-----av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~----~~~~G 127 (389)
T PRK05968 61 DNPTVRAFE----EMLAKLEGAED-----ARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETI----LKRMG 127 (389)
T ss_pred CChhHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHH----HHHcC
Confidence 346678888 99999999976 388899998887788888999999999998887765433211 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ +.++. .|++++++.+ + +|++|++ +++| .+.+.|+++|.++|+++|+++|+|++++.+....+. .
T Consensus 128 ~~v--~~vd~------~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~-~ 196 (389)
T PRK05968 128 VEV--DYVDG------RDEEAVAKAL-P-GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI-T 196 (389)
T ss_pred ceE--EEeCC------CCHHHHHHhc-c-cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch-h
Confidence 223 22222 2889999988 4 7999999 7777 678899999999999999999999998776533222 2
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++|+++||. ||+++.+++ +.+++.....+...+..+....+.+ +..+.
T Consensus 197 ~---g~Divv~S~tK~l~g~~~~~gG~i~~~~~--------------~~~~l~~~~~~~~g~~~~~~~A~~~---l~~L~ 256 (389)
T PRK05968 197 L---GVDLVIHSASKYLGGHSDTVAGVVAGSKE--------------HIARINAEAYPYLGAKLSPFEAWLL---LRGLR 256 (389)
T ss_pred c---CCcEEEeeccccccCCCCeEEEEEEECHH--------------HHHHHHHHHHHhCCCCCChHHHHHH---HcccC
Confidence 2 78999999999999864 477776663 3333332111111222332222222 33332
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+....+++.+.+.++.+.|++.|.|+.+
T Consensus 257 ---tl~~r~~~~~~~a~~la~~L~~~p~v~~v 285 (389)
T PRK05968 257 ---TLPLRMKAHEASALEIARRLKAHPVVERV 285 (389)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 44556666667788899999999988754
No 79
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.86 E-value=9.3e-21 Score=173.35 Aligned_cols=219 Identities=16% Similarity=0.137 Sum_probs=148.6
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
++...++| +++++++|+++. +++++|++++..++.+++++||+|+++...|+++...+... ....|
T Consensus 64 ~p~~~~Le----~~lA~l~G~~~~-----~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~----~~~~G- 129 (398)
T PRK07504 64 NPTVDMFE----KRMCALEGAEDA-----RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETL----LPRYG- 129 (398)
T ss_pred CchHHHHH----HHHHHHhCCCee-----eEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHH----HhhcC-
Confidence 46677888 999999999874 66788888777677778999999999987777654332211 01112
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
++.+.+ + ..|++++++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+...... ..
T Consensus 130 -~~v~~v--d----~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~-~~ 200 (398)
T PRK07504 130 -IESTLV--D----GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPL-EL 200 (398)
T ss_pred -eEEEEE--C----CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCch-hh
Confidence 222322 2 3689999999987 8999999 7888 799999999999999999999999999876543221 12
Q ss_pred CCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 183 PFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
++|++++|++|+++|+. ||+++.+++. ..+.+..... .....++....+.+..+|+
T Consensus 201 ---gaDivv~S~sK~l~g~g~~~GG~vv~~~~~-------------i~~~~~~~~~-~~g~~~s~~~A~~~l~~L~---- 259 (398)
T PRK07504 201 ---GAHIVVYSATKHIDGQGRCLGGVVLSDKAW-------------IEEHLQDYFR-HTGPSLSPFNAWTLLKGLE---- 259 (398)
T ss_pred ---CCCEEEeeccccccCCccceEEEEEeCcHH-------------HHHHHHHHHH-HhCCCCCHHHHHHHHhccc----
Confidence 79999999999998754 4677766632 1111111000 0011223233333333333
Q ss_pred hcChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 260 LITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
.+....+++.+.+.++.+.|++.|.|+.
T Consensus 260 --tl~~R~~~~~~na~~la~~L~~~p~v~~ 287 (398)
T PRK07504 260 --TLPVRVRQQTESAAAIADFLAGHPKVAR 287 (398)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHcCCCccE
Confidence 3455566666788888888888888764
No 80
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.86 E-value=1.1e-20 Score=171.49 Aligned_cols=221 Identities=17% Similarity=0.122 Sum_probs=152.7
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++...++| +.+++++|.+. .++++||++++..++.+++++||+|+++...|++........ ....|
T Consensus 38 ~~p~~~~le----~~la~l~g~~~-----a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~----~~~~g 104 (369)
T cd00614 38 GNPTVDALE----KKLAALEGGEA-----ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERL----LPKLG 104 (369)
T ss_pred CChhHHHHH----HHHHHHHCCCC-----EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHH----HhhcC
Confidence 567788888 89999999865 388889998888888999999999999988877765332211 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ ..++.+ |++++++++++ ++++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+.....+ .
T Consensus 105 ~~~--~~v~~~------d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~-~ 174 (369)
T cd00614 105 IEV--TFVDPD------DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPL-E 174 (369)
T ss_pred eEE--EEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChh-h
Confidence 223 322322 58999999987 8999999 6777 799999999999999999999999998876542111 1
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++|+++|+. ||+++++++ ++.+++...... ..++.+....+. ++..+.
T Consensus 175 ~---g~Divv~S~tK~l~g~~~~~gG~v~~~~~-------------~l~~~l~~~~~~-~g~~~~p~~a~~---~l~~l~ 234 (369)
T cd00614 175 L---GADIVVHSATKYIGGHSDVIAGVVVGSGE-------------ALIQRLRFLRLA-LGTILSPFDAWL---LLRGLK 234 (369)
T ss_pred h---CCcEEEeccceeccCCCCceEEEEEeCcH-------------HHHHHHHHHHHh-hCCCCCHHHHHH---HHcCCC
Confidence 2 79999999999998754 688888762 222322221110 111222222222 233332
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+....++..+.+.++.+.|++.+.|+.+
T Consensus 235 ---tl~~r~~~~~~na~~la~~L~~~~~v~~V 263 (369)
T cd00614 235 ---TLPLRMERHSENALKVAEFLEKHPKVERV 263 (369)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 44556677778888888889888877653
No 81
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.85 E-value=5.5e-20 Score=167.16 Aligned_cols=227 Identities=19% Similarity=0.158 Sum_probs=157.0
Q ss_pred CCCCCccCCC-chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc
Q 022463 15 GYPGARYYGG-NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ 93 (297)
Q Consensus 15 ~~~~~~~~~~-~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~ 93 (297)
+..|++...+ .+..+++| +.+++++|++. .+++++|+.+|+.++..+.++||.|++...+|.+.+.++..
T Consensus 44 ~~~gs~~~~g~~~~~~~~e----~~la~~~~~~~-----~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~ 114 (370)
T PRK05937 44 GYGGSRAILGPSSLLDDLE----HKIAHFHGAPE-----AFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV 114 (370)
T ss_pred CCCCcCcccCChHHHHHHH----HHHHHHhCCCe-----EEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH
Confidence 3445554433 34566666 99999999965 38999999999866566667899999999999998876543
Q ss_pred ccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc-----CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEE
Q 022463 94 TDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 94 ~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~liv 166 (297)
.. +.. +.++ ..|++++++.+++. ++.+|++ +.+| +|.+.|+++|.++|+++|+++++
T Consensus 115 ~~-------~~~---~~~~------~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~liv 178 (370)
T PRK05937 115 IS-------GWH---QSFR------HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIV 178 (370)
T ss_pred cC-------Cce---EEec------CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 21 111 1111 35899999998741 2445555 5555 79999999999999999999999
Q ss_pred ehhhhcccccccCC----CCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCC
Q 022463 167 DMAHISGLVAAGVI----PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGG 241 (297)
Q Consensus 167 D~a~~~g~~~~~~~----~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t 241 (297)
|++|+.|..+.+.. .+.....|+++.|++|.+ ||.|+.++..++ ....+.....|.. .++
T Consensus 179 Dea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~~~--------------~~~~~~~~~~~~~~s~~ 243 (370)
T PRK05937 179 DEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALLSSSE--------------VKQDLMLNSPPLRYSTG 243 (370)
T ss_pred ECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEEcCHH--------------HHHHHHHhCCCCeecCC
Confidence 99999998776542 121112345677888976 777855555552 2222221111222 344
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
.+.+.++++.++++.+.+. + +.++++.+++.+++.+.|..
T Consensus 244 ~~~~~~~a~~aal~~l~~~-~-~~~~~~l~~l~~~l~~~l~~ 283 (370)
T PRK05937 244 LPPHLLISIQVAYDFLSQE-G-ELARKQLFRLKEYFAQKFSS 283 (370)
T ss_pred CCHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHhcCC
Confidence 5667788899999999876 6 66788899999999998865
No 82
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.85 E-value=9.4e-20 Score=166.58 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=156.8
Q ss_pred ccCCCCCCCCccC-CCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcc
Q 022463 10 NKYSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 88 (297)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~ 88 (297)
++|+-+..++|.+ +......++| +++++++|.+. .++++||++++..++.+++++||+|++++..|++.+
T Consensus 26 ~~~g~~~~~sr~~yg~~~~~~~LE----~~lA~~~g~e~-----al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~ 96 (392)
T PLN03227 26 SHYGCGSCGPRGFYGTIDAHLELE----QCMAEFLGTES-----AILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALL 96 (392)
T ss_pred HHhCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHH
Confidence 4577776776665 4446677888 99999999975 399999998888888889999999999999888875
Q ss_pred cccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh----------cCCcEEEE-cCCC-CCCcccHHHHHHH
Q 022463 89 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL----------FRPKLIVA-GASA-YARLYDYERIRKV 156 (297)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~----------~~~~~v~~-~~~~-~G~~~~~~~i~~l 156 (297)
..+ .+.+..+ +.++.+ + .-|++.+.+.+.+ .++++|++ ++.| .|.+.|+++|.++
T Consensus 97 ~~~--------~l~~~~~--~~~~~~-d--~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l 163 (392)
T PLN03227 97 VGV--------SLSRANV--RWFRHN-D--MKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVAL 163 (392)
T ss_pred HHH--------HHcCCeE--EEeCCC-C--HHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHH
Confidence 432 1222112 222222 0 1133333334431 14677777 5555 6899999999999
Q ss_pred HHhcCCEEEEehhhhcccccc---------cCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHH
Q 022463 157 CNKQKAIMLADMAHISGLVAA---------GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYE 227 (297)
Q Consensus 157 a~~~g~~livD~a~~~g~~~~---------~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~ 227 (297)
|++||+++|+|++|+.|.... ++. |..++|++++|.+|.+ ||.||+++++++ ..
T Consensus 164 ~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~--p~~~~Div~~slsk~~-g~~gg~v~~~~~--------------~~ 226 (392)
T PLN03227 164 KEEFHYRLILDESFSFGTLGKSGRGSLEHAGLK--PMVHAEIVTFSLENAF-GSVGGMTVGSEE--------------VV 226 (392)
T ss_pred HHHcCCEEEEECcccccccCCCCCcHHHHcCCC--CCCCceEEEeechhhh-hccCcEEecCHH--------------HH
Confidence 999999999999998665421 121 2237899999999975 688998887773 33
Q ss_pred HHhhhcccCCC-CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhcc--CCCCcccccC
Q 022463 228 EKINQAVFPGL-QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQN--NSENIEEDKG 292 (297)
Q Consensus 228 ~~~~~~~~~~~-~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~g 292 (297)
+.+........ .++.+....++..+++..+.+. +.+.++.+++.++|.++|+ ..+.+.+++|
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~---~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg 291 (392)
T PLN03227 227 DHQRLSGSGYCFSASAPPFLAKADATATAGELAG---PQLLNRLHDSIANLYSTLTNSSHPYALKLRN 291 (392)
T ss_pred HHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 33322111122 2222233344444555544322 4566667777777777776 3455666655
No 83
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.85 E-value=1.6e-20 Score=171.25 Aligned_cols=220 Identities=17% Similarity=0.118 Sum_probs=153.0
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccc-ccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT-DTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~~~~~~ 102 (297)
.++...++| +.+++++|.+.. +.++||+.++..++.+++++||+|+++...|++.+...... ...+
T Consensus 59 ~~p~~~~Le----~~lA~~~g~~~~-----i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~g---- 125 (388)
T PRK07811 59 GNPTRTALE----EQLAALEGGAYG-----RAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG---- 125 (388)
T ss_pred CCccHHHHH----HHHHHHhCCCce-----EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCC----
Confidence 346677888 999999999874 88889988887788899999999999988887654433211 1112
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
++...++ ..|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+.....+.
T Consensus 126 ---i~~~~~d------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~ 195 (388)
T PRK07811 126 ---VEYTPVD------LSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLA 195 (388)
T ss_pred ---eEEEEeC------CCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCchh
Confidence 2222222 2489999999987 8999999 7888 7999999999999999999999999988765432221
Q ss_pred CCCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 181 PSPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
. ++|++++|++|+++||. ||+++++++ ++.+.+...... .....+... ...++..+
T Consensus 196 -~---gaDivv~S~sK~l~g~~~~~gG~vv~~~~-------------~l~~~~~~~~~~-~g~~~s~~~---a~l~~~~L 254 (388)
T PRK07811 196 -L---GADVVVHSTTKYIGGHSDVVGGALVTNDE-------------ELDEAFAFLQNG-AGAVPGPFD---AYLTLRGL 254 (388)
T ss_pred -h---CCcEEEecCceeecCCCCcEEEEEEECCH-------------HHHHHHHHHHHh-cCCCCCHHH---HHHHHhcc
Confidence 2 79999999999999875 588887764 233322221110 011111111 12223333
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
. .+....++..+.+..+.+.|++.|.|+.+
T Consensus 255 ~---tl~~R~~~~~~na~~la~~L~~~p~v~~V 284 (388)
T PRK07811 255 K---TLAVRMDRHSENAEAVAEFLAGHPEVSTV 284 (388)
T ss_pred C---cHHHHHHHHHHHHHHHHHHHHhCCCeeEE
Confidence 2 34556666777888888999999988754
No 84
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.85 E-value=4.7e-20 Score=168.83 Aligned_cols=218 Identities=17% Similarity=0.129 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
+..+.+| +.++++.|++. .+++++|+++...++.++++|||+|+++...|++.......... ..|
T Consensus 60 p~~~~Le----~~lA~l~g~~~-----~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~----~~g-- 124 (405)
T PRK08776 60 PTRDLLG----EALAELEGGAG-----GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAK----KGH-- 124 (405)
T ss_pred hHHHHHH----HHHHHHhCCCc-----eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHH----hcC--
Confidence 4556666 99999999854 38888998776668888899999999988777664332221111 112
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 183 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~ 183 (297)
++.+.++ ..|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+.....+ ..
T Consensus 125 ~~v~~v~------~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl-~~- 195 (405)
T PRK08776 125 FALITAD------LTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL-EF- 195 (405)
T ss_pred cEEEEEC------CCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc-cc-
Confidence 2223222 2478999999987 8999988 7888 899999999999999999999999999765432221 12
Q ss_pred CCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhh
Q 022463 184 FEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 260 (297)
Q Consensus 184 ~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~ 260 (297)
++|++++|.+|+++|+. ||+++++++ ++.+++...... .....+....+.+..+++
T Consensus 196 --gaDivv~S~tK~l~g~~~~~~G~vv~~~~-------------~l~~~l~~~~~~-~g~~~s~~~a~l~~~gl~----- 254 (405)
T PRK08776 196 --GADLVLHSTTKYINGHSDVVGGAVVARDA-------------ELHQQLVWWANA-LGLTGSPFDAFLTLRGLR----- 254 (405)
T ss_pred --cCCEEEecCceeecCCCCceEEEEEeCCH-------------HHHHHHHHHHHh-cCCCCCHHHHHHHHhhhC-----
Confidence 89999999999999875 477776553 233333221110 011233333333333333
Q ss_pred cChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 261 ITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 261 ~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
.++.+.+++.+.+..+.+.|++.|.|+.
T Consensus 255 -tl~~r~~~~~~na~~la~~L~~~p~v~~ 282 (405)
T PRK08776 255 -TLDARLRVHQENADAIAALLDGHAAVNQ 282 (405)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence 3455667777788888888888888874
No 85
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.85 E-value=3.6e-20 Score=168.32 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=149.0
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
+++..+.+| +.++++.|.+. +++++|+ +++..++.+++++||+|+++...|++.+..+..... ..
T Consensus 51 ~npt~~~Le----~~lA~leg~e~------ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~----~~ 116 (388)
T PRK08861 51 GNPNRGLLE----QTLSELESGKG------AVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRAN----KG 116 (388)
T ss_pred CCchHHHHH----HHHHHHhCCCe------EEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHh----cC
Confidence 557788888 99999999753 5555555 677668888899999999998777765443321111 01
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
| +..+.+ + ..|++++++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+....++.
T Consensus 117 g--i~v~~v--d----~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~ 187 (388)
T PRK08861 117 D--FKVQFV--D----QSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLE 187 (388)
T ss_pred C--eEEEEE--C----CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcc
Confidence 1 223322 2 2488999999987 8999999 7888 8999999999999999999999999998775443222
Q ss_pred CCCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 181 PSPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
. ++|++++|+|||++|+. ||+++++++ ++.+++..... ......+....+-+..+|+
T Consensus 188 -~---GaDivv~S~tK~l~G~~d~~gG~i~~~~~-------------~~~~~~~~~~~-~~G~~~~p~~a~l~~rgl~-- 247 (388)
T PRK08861 188 -L---GADFVIHSTTKYINGHSDVIGGVLITKTK-------------EHAEELAWWGN-CIGATGTPFDSYMTLRGIR-- 247 (388)
T ss_pred -c---CCCEEEeecceeccCCCcceeEEEEecHH-------------HHHHHHHHHHh-ccCCCCChHHHHHHHhcCC--
Confidence 2 89999999999999976 477776653 23333322111 1111222233222222222
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+..+.+++.+.+..+.+-|++.|.|+.+
T Consensus 248 ----Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V 276 (388)
T PRK08861 248 ----TLGARMRVHEESAQQILAYLQTQSLVGTI 276 (388)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHhCCCeeEE
Confidence 44556666677777788888888887754
No 86
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.85 E-value=3.7e-20 Score=168.12 Aligned_cols=239 Identities=14% Similarity=0.146 Sum_probs=155.5
Q ss_pred CCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccc
Q 022463 15 GYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 15 ~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
---|+..|++++...++| +.+++++|.++ .+.++||+.++..++...++|||+| +.++|....... .
T Consensus 67 ~~vGDd~Yagd~s~~~LE----~~vAe~lG~e~-----aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ah--I 133 (460)
T PRK13237 67 MMIGDEAYAGSRNFYHLE----ETVQEYYGFKH-----VVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYH--Q 133 (460)
T ss_pred HhhcchhhcCCCcHHHHH----HHHHHHHCCCe-----EEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHH--H
Confidence 345788899999999999 88999999987 3788899987765555458999975 554444443221 1
Q ss_pred cccccceeeeeeE--eeecccCCCCCcCCHHHHHHHhhhcC---CcEEEE-cCCC-C-CCcc---cHHHHHHHHHhcCCE
Q 022463 95 DTKKISAVSIFFE--TMPYRLNESTGYIDYDQLEKSATLFR---PKLIVA-GASA-Y-ARLY---DYERIRKVCNKQKAI 163 (297)
Q Consensus 95 ~~~~~~~~g~~~~--~v~~~~~~~~~~~d~~~l~~~l~~~~---~~~v~~-~~~~-~-G~~~---~~~~i~~la~~~g~~ 163 (297)
...|+.+...... .-+-..++.++.+|+++|++.|++.. ++++.+ ..+| + |.+. ++++|.++|++||++
T Consensus 134 ~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~ 213 (460)
T PRK13237 134 ELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIK 213 (460)
T ss_pred HhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCE
Confidence 1112211110000 00001234578999999999998622 234444 3445 5 4443 689999999999999
Q ss_pred EEEehhhhccccc------ccCCCCC--------CCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHH
Q 022463 164 MLADMAHISGLVA------AGVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEK 229 (297)
Q Consensus 164 livD~a~~~g~~~------~~~~~~~--------~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~ 229 (297)
||.|+||+.|... .+....+ +..+|.+++|++|.+.++.||+|+++++ ++.++
T Consensus 214 Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~-------------eL~~~ 280 (460)
T PRK13237 214 VFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDE-------------ELFDE 280 (460)
T ss_pred EEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCH-------------HHHHH
Confidence 9999999988432 1122222 3479999999999999999999999986 56666
Q ss_pred hhhc--ccCCC--CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 230 INQA--VFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 230 ~~~~--~~~~~--~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
+... .++++ .|..+.-.+.+++.+|.+..+..-+.... ...++|-+.|.+
T Consensus 281 ~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri----~~~~~l~~~L~~ 334 (460)
T PRK13237 281 AKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRV----GQVRYLGEKLLA 334 (460)
T ss_pred HHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHH----HHHHHHHHHHHH
Confidence 5544 33443 34444567888888888877652233333 344555555543
No 87
>PLN02880 tyrosine decarboxylase
Probab=99.85 E-value=1.9e-20 Score=174.89 Aligned_cols=247 Identities=11% Similarity=0.052 Sum_probs=161.0
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCCCC----cceEEecCChHHHHHHHHHhc----C-------CCCeEEEecCCCCCc
Q 022463 23 GGNEYIDMAESLCQKRALEAFRLDPEKW----GVNVQSLSGSPSNFQVYTALL----K-------PHDRIMALDLPHGGH 87 (297)
Q Consensus 23 ~~~~~~~~~e~~~~~~la~~~g~~~~~~----~~~v~~~sG~~~~~~~~~~~~----~-------~gd~Vl~~~~~~~~~ 87 (297)
..++...++|+.+.+++++++|.+...+ +..++.++||.+|+.++.+.- + +.-.|++++..|.|.
T Consensus 115 ~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv 194 (490)
T PLN02880 115 ITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSAL 194 (490)
T ss_pred ccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHH
Confidence 3456788999999999999999975421 123555555667765543321 1 112455566677777
Q ss_pred ccccccccccccceeeee---eEeeecccCC-CCCcCCHHHHHHHhhhc-----CCcEEEE--cCCCCCCcccHHHHHHH
Q 022463 88 LSHGYQTDTKKISAVSIF---FETMPYRLNE-STGYIDYDQLEKSATLF-----RPKLIVA--GASAYARLYDYERIRKV 156 (297)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~---~~~v~~~~~~-~~~~~d~~~l~~~l~~~-----~~~~v~~--~~~~~G~~~~~~~i~~l 156 (297)
..... +.|.. ++.|+ .|. +++++|++.|+++|.+. .|-+|+. +.+++|.+.|+++|.++
T Consensus 195 ~Kaa~--------~lGlg~~~v~~Vp--~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i 264 (490)
T PLN02880 195 QKACQ--------IAGIHPENCRLLK--TDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKI 264 (490)
T ss_pred HHHHH--------HcCCCHHHEEEee--cCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHH
Confidence 55443 33332 44454 442 46799999999999752 1444444 46678999999999999
Q ss_pred HHhcCCEEEEehhhhcccccccCCCCC---CCCccEEEecCCccCCCCCc-eEEEEecCchh-h-ccCCccchhhHHHHh
Q 022463 157 CNKQKAIMLADMAHISGLVAAGVIPSP---FEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE-I-NKQGKEVFYDYEEKI 230 (297)
Q Consensus 157 a~~~g~~livD~a~~~g~~~~~~~~~~---~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~-~-~~~g~~~~~~~~~~~ 230 (297)
|++||+++|||+|++.+....+..... ..++|.++.++|||++.|.+ |++++++.... + +.... +| +
T Consensus 265 ~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~----~Y---l 337 (490)
T PLN02880 265 AKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNP----EF---L 337 (490)
T ss_pred HHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCH----HH---h
Confidence 999999999999998887654221111 13689999999999999999 99999864321 1 11110 11 1
Q ss_pred hhcc-----cC-----CCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 231 NQAV-----FP-----GLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 231 ~~~~-----~~-----~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
.... .. ....+... .-..++.+++.+... |+.+..++..++++++.+.|++.+.++
T Consensus 338 ~~~~~~~~~~~~~~~~~i~~~rr~-~alklw~~l~~~G~~-g~~~~i~~~~~lA~~~~~~l~~~~~~e 403 (490)
T PLN02880 338 KNKASQANSVVDYKDWQIPLGRRF-RSLKLWMVLRLYGVE-NLQSYIRNHIKLAKEFEQLVAQDSRFE 403 (490)
T ss_pred cCccccccCCCChhccCcCCCCcc-cHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 1100 00 01111111 224666778777666 777777777799999999999888765
No 88
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.85 E-value=5.9e-20 Score=171.90 Aligned_cols=239 Identities=10% Similarity=0.075 Sum_probs=159.3
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHH---HHH-HhcCCCC----eEEEecCCCCCcccccccccc
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ---VYT-ALLKPHD----RIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~---~~~-~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
.+...++..+.++++++++|.+.. .+..++|+.+.+. +++ .++++|| +|+++..+|+++....
T Consensus 108 sqG~lel~~~~~~~la~l~G~~~~----~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~----- 178 (481)
T PRK04366 108 VQGALELMYELQEWLKEITGMDAV----TLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASA----- 178 (481)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCce----EEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHH-----
Confidence 355667788888999999999752 4666677654332 233 2356776 9999998998886542
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCCCc-ccHHHHHHHHHhcCCEEEEehhhhccc
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYARL-YDYERIRKVCNKQKAIMLADMAHISGL 174 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G~~-~~~~~i~~la~~~g~~livD~a~~~g~ 174 (297)
...|.+++.+ +.+ .++.+|++++++.+++ ++++|++ +++.+|.. .|+++|.++|+++|+++++|++|..+.
T Consensus 179 ---~~~G~~vv~v--~~~-~~~~~D~e~L~~~i~~-~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~ 251 (481)
T PRK04366 179 ---AMAGFKVVEI--PSN-EDGLVDLEALKAAVGE-DTAALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAI 251 (481)
T ss_pred ---HHcCCEEEEe--ecC-CCCCcCHHHHHhhccc-CCeEEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhh
Confidence 2334334444 444 4678999999999987 8999888 55557876 589999999999999999999998664
Q ss_pred ccc-cCCCCCCCCccEEEecCCccCCCCCc------eEEEEecCchhhcc---CCccchhhHHHHhh--hcccCCCCCCC
Q 022463 175 VAA-GVIPSPFEYADVVTTTTHKSLRGPRG------AMIFFRKGVKEINK---QGKEVFYDYEEKIN--QAVFPGLQGGP 242 (297)
Q Consensus 175 ~~~-~~~~~~~~~~D~~~~s~~K~l~gp~g------G~i~~~~~~~~~~~---~g~~~~~~~~~~~~--~~~~~~~~~t~ 242 (297)
... +.... ++|++++++||||++|.| |+++++++...++. .+..+. .+.-.++ +...-...++.
T Consensus 252 ~g~~~~~~~---GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~-~~~l~~~r~~~i~r~~a~t~ 327 (481)
T PRK04366 252 LGKARPGDM---GFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGD-RYRLDYDRPKSIGRVRAFYG 327 (481)
T ss_pred cccCCcccc---CCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCC-ceeecccccccCCCcccccC
Confidence 432 22223 899999999999976543 68888876422211 011100 0100011 00000113344
Q ss_pred chHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 243 HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 243 ~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+...+.++...+..+... |+.++.+++..+++++.++|+++
T Consensus 328 ~~l~~~~a~~~l~~~G~~-Gl~~~a~~~~~~a~~l~~~L~~~ 368 (481)
T PRK04366 328 NFGVLVRAYAYIRSLGAE-GLREVSEDAVLNANYLKARLKDI 368 (481)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhh
Confidence 455555555666666655 77788888899999999999886
No 89
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.85 E-value=3.9e-20 Score=169.09 Aligned_cols=219 Identities=15% Similarity=0.097 Sum_probs=150.7
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-cccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~ 102 (297)
+++..+++| +++++++|++. .++++||++++..++.+++++||+|+++...|++....+.. +...+
T Consensus 62 ~~p~~~~le----~~lA~l~g~~~-----~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~G---- 128 (398)
T PRK08249 62 TNPTVQAFE----EKVRILEGAEA-----ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMG---- 128 (398)
T ss_pred CChHHHHHH----HHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCC----
Confidence 557778888 99999999865 38999999888778888899999999999888765433321 11122
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
++... ++ ..|++.+++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+.....+
T Consensus 129 ---i~v~~--vd----~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l- 197 (398)
T PRK08249 129 ---VDVTL--CE----TGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL- 197 (398)
T ss_pred ---eEEEE--cC----CCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch-
Confidence 22222 22 2589999999987 8999999 7888 799999999999999999999999998765432211
Q ss_pred CCCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 181 PSPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
.. ++|++++|++|+++|+. ||+++.++ ++.+.+...... ..+..+....+.+..+++.+
T Consensus 198 ~~---~~Divv~S~sK~l~g~~~~~gG~vv~~~--------------~l~~~l~~~~~~-~g~~~s~~~a~l~l~~l~tL 259 (398)
T PRK08249 198 AL---GADLVIHSATKFLSGHADALGGVVCGSK--------------ELMEQVYHYREI-NGATMDPMSAYLILRGMKTL 259 (398)
T ss_pred hh---CCCEEeccCceecCCCCCceEEEEECCH--------------HHHHHHHHHHHh-cCCCCCHHHHHHHHhCcchH
Confidence 12 79999999999998754 46666655 333333222111 11223333333333344333
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
+...+++.+.+..+.+.|++.|.|+.+
T Consensus 260 ------~~R~~~~~~na~~la~~L~~~p~v~~V 286 (398)
T PRK08249 260 ------KLRVRQQQESAMALAKYLQTHPKVEAV 286 (398)
T ss_pred ------HHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 344566667777888888888877753
No 90
>PLN02590 probable tyrosine decarboxylase
Probab=99.85 E-value=6.6e-20 Score=171.67 Aligned_cols=250 Identities=14% Similarity=0.070 Sum_probs=169.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCCCCCC----cceEEecCChHHHHHHHHHh----cC-------CCCeEEEecCCCC
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLDPEKW----GVNVQSLSGSPSNFQVYTAL----LK-------PHDRIMALDLPHG 85 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~----~~~v~~~sG~~~~~~~~~~~----~~-------~gd~Vl~~~~~~~ 85 (297)
.|..++...++|+.+.+++++++|.+...+ +..+++++|+.+|+.++.+. .+ |.-.|++++..|.
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~ 240 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS 240 (539)
T ss_pred CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH
Confidence 444567889999999999999999975311 12455555666776554432 11 1224445666677
Q ss_pred Ccccccccccccccceeee---eeEeeecccCC-CCCcCCHHHHHHHhhhc-----CCcEEEE--cCCCCCCcccHHHHH
Q 022463 86 GHLSHGYQTDTKKISAVSI---FFETMPYRLNE-STGYIDYDQLEKSATLF-----RPKLIVA--GASAYARLYDYERIR 154 (297)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~-~~~~~d~~~l~~~l~~~-----~~~~v~~--~~~~~G~~~~~~~i~ 154 (297)
|...... +.|. .++.|+ .|. +++.+|++.|+++|.+. .|-+|+. +.+++|.+.|+++|.
T Consensus 241 Sv~KAa~--------ilGlg~~~vr~Vp--~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia 310 (539)
T PLN02590 241 SFRKACL--------IGGIHEENIRLLK--TDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLG 310 (539)
T ss_pred HHHHHHH--------HcCCCcccEEEEe--CCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHH
Confidence 7644333 3333 244554 442 36799999999999752 2444544 466799999999999
Q ss_pred HHHHhcCCEEEEehhhhcccccccCCCC---CCCCccEEEecCCccCCCCCc-eEEEEecCchhh--ccCCccchhhHHH
Q 022463 155 KVCNKQKAIMLADMAHISGLVAAGVIPS---PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI--NKQGKEVFYDYEE 228 (297)
Q Consensus 155 ~la~~~g~~livD~a~~~g~~~~~~~~~---~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~--~~~g~~~~~~~~~ 228 (297)
++|++||+++|||+|++......+.... ....+|.+++++|||+..|.+ |+++++++..+. +.. -.+
T Consensus 311 ~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~-------~~~ 383 (539)
T PLN02590 311 NIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKT-------NPE 383 (539)
T ss_pred HHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhc-------CHH
Confidence 9999999999999998766654432211 123689999999999999999 999998853211 100 011
Q ss_pred Hhhhc----------ccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 229 KINQA----------VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 229 ~~~~~----------~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
++... .......+.. +....++.+|+.+... |+.+..++..+++++|.+.|++.+.+|-
T Consensus 384 YL~~~~~~~~~~~d~~d~~i~lsRr-~raLklW~~lr~~G~~-G~~~~i~~~~~lA~~~~~~l~~~~~fel 452 (539)
T PLN02590 384 YLEFKVSKKDTVVNYKDWQISLSRR-FRSLKLWMVLRLYGSE-NLRNFIRDHVNLAKHFEDYVAQDPSFEV 452 (539)
T ss_pred HhCCcccccccCCCccccCCCCCCc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 11100 0011233334 4557888999999988 9999999999999999999999987763
No 91
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.85 E-value=3.3e-20 Score=170.84 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=122.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccc-ccccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGY-QTDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~~~~~~ 102 (297)
+++..+.+| +.+++++|++. .++++||++++.+++.+++++||+|+++..+|+++...+. .+...+
T Consensus 67 ~~pt~~~le----~~la~l~g~~~-----~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~G---- 133 (437)
T PRK05613 67 TNPTVEALE----NRIASLEGGVH-----AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLG---- 133 (437)
T ss_pred cChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcC----
Confidence 456777777 99999999864 4999999988777888889999999999989988744322 122223
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
++++.++ + ..|++++++++++ +|++|++ +++| ++.+.|+++|.++|+++|+++|+|++|+.|....++
T Consensus 134 ---i~v~~vd-~----~~d~e~l~~~l~~-~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~- 203 (437)
T PRK05613 134 ---IEVTFVE-N----PDDPESWQAAVQP-NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPL- 203 (437)
T ss_pred ---eEEEEEC-C----CCCHHHHHHhCCc-cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccChH-
Confidence 2223333 2 1288999999998 8998888 6777 689999999999999999999999999887653222
Q ss_pred CCCCCCccEEEecCCccCCCCC---ceEEEEec
Q 022463 181 PSPFEYADVVTTTTHKSLRGPR---GAMIFFRK 210 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~ 210 (297)
.. ++|++++|+||+++|+. ||+++.+.
T Consensus 204 ~~---GaDivv~S~~K~l~G~gd~~gG~vv~~~ 233 (437)
T PRK05613 204 EL---GADVVVASLTKFYTGNGSGLGGVLIDGG 233 (437)
T ss_pred Hh---CCCEEEeeccceecCCCcceeEEEEecC
Confidence 33 89999999999997753 35555444
No 92
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.85 E-value=9.5e-20 Score=169.08 Aligned_cols=230 Identities=16% Similarity=0.139 Sum_probs=149.7
Q ss_pred CCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 18 GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 18 ~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
|...|+++....+++ +.++++++.+. +++++|+ .++..++.++++||| |+++.. |.....+
T Consensus 70 g~~~Y~~~~g~~~Lr----eaia~~~~~~~------vv~t~ggt~A~~~~~~all~pGD-Vii~~p-~~~~~~~------ 131 (460)
T PRK13238 70 GDEAYAGSRSYYRLE----DAVKDIFGYPY------TIPTHQGRAAEQILFPVLIKKGD-VVPSNY-HFDTTRA------ 131 (460)
T ss_pred CCcccCCCCCHHHHH----HHHHHHhCCCc------EEECCCHHHHHHHHHHHhCCCCC-EEccCC-cccchHH------
Confidence 456788888899999 78888888764 5555555 677778888999999 776653 3222211
Q ss_pred cccceeeeeeEeeeccc-------CCCCCcCCHHHHHHHhhh---cCCcEEEE-cCCC-CC-Cccc---HHHHHHHHHhc
Q 022463 97 KKISAVSIFFETMPYRL-------NESTGYIDYDQLEKSATL---FRPKLIVA-GASA-YA-RLYD---YERIRKVCNKQ 160 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~-------~~~~~~~d~~~l~~~l~~---~~~~~v~~-~~~~-~G-~~~~---~~~i~~la~~~ 160 (297)
.+...|.....++++. ++..+.+|+++|++.+++ .+|++|++ +++| +| .+.+ +++|.++|++|
T Consensus 132 -~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~ 210 (460)
T PRK13238 132 -HIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY 210 (460)
T ss_pred -HHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 1233444444443321 112345999999999985 26889888 5777 55 5554 56899999999
Q ss_pred CCEEEEehhhhcccccc------cCCCC--------CCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhH
Q 022463 161 KAIMLADMAHISGLVAA------GVIPS--------PFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDY 226 (297)
Q Consensus 161 g~~livD~a~~~g~~~~------~~~~~--------~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~ 226 (297)
|+++|+|++|..+...+ +.... .+..+|++++|++|.+.+|.||+++++++ ++
T Consensus 211 gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~-------------~l 277 (460)
T PRK13238 211 GIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDE-------------DL 277 (460)
T ss_pred CCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChH-------------HH
Confidence 99999999986532111 01111 12368999999999999999999999863 44
Q ss_pred HHHhhhccc--CC--CCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 227 EEKINQAVF--PG--LQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 227 ~~~~~~~~~--~~--~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
.+++..... .+ ..++.+.....|+..+|+...+...++...+ ..++|.+.|++
T Consensus 278 ~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~----~~~~l~~~L~~ 334 (460)
T PRK13238 278 FTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIG----QVEYLGEGLEE 334 (460)
T ss_pred HHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHH----HHHHHHHHHHH
Confidence 555543321 12 1444555667888888877655423333333 34666666655
No 93
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.85 E-value=4.7e-20 Score=167.70 Aligned_cols=217 Identities=18% Similarity=0.156 Sum_probs=146.0
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccc-ccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT-DTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~~~~~~ 102 (297)
+++..+++| +++++++|++. .+++++|++++..++ .++++||+|+++...|+++...+... ...+++
T Consensus 45 ~~p~~~~le----~~la~l~g~~~-----~l~~~sG~~al~~~l-~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~-- 112 (378)
T TIGR01329 45 GNPTRTALE----SLLAKLDKADR-----AFAFSSGMAALDVIT-RLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVV-- 112 (378)
T ss_pred CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHH-HHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcE--
Confidence 445667777 99999999854 378888887655444 47899999999988887765443221 112222
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
+ +.++. .|++++++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+.....+
T Consensus 113 ---v--~~vd~------~d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l- 179 (378)
T TIGR01329 113 ---V--VHVDT------TDLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL- 179 (378)
T ss_pred ---E--EEeCC------CCHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-
Confidence 3 32232 278999999986 8999999 7888 799999999999999999999999998776543332
Q ss_pred CCCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhccc-CCCCCCCchHHHHHHHHHHHH
Q 022463 181 PSPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVF-PGLQGGPHNHTITGLAVALKQ 256 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~t~~~~~~~al~~al~~ 256 (297)
.. ++|++++|++|+++||. +|+++++++ .+.+++..... .+. ..+.... ...+..
T Consensus 180 ~~---g~Di~v~S~tK~l~G~~~~~~G~v~~~~~-------------~~~~~~~~~~~~~G~--~~~~~~a---~l~~~~ 238 (378)
T TIGR01329 180 EL---GADIVYHSATKFLAGHSDVMAGVLAVKGE-------------EIAKKVYFLQNSTGS--GLAPFDC---WLLLRG 238 (378)
T ss_pred hc---CCcEEEEecceeccCCccceeEEEEeCcH-------------HHHHHHHHHHHhcCC--cCCHHHH---HHHHcc
Confidence 22 79999999999999975 477877664 23333332211 111 1111111 111222
Q ss_pred HhhhcChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 257 VCTLITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 257 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
+ ..+....++....+..+.+.|++.|.++.
T Consensus 239 l---~tl~~R~e~~~~na~~la~~L~~~~~v~~ 268 (378)
T TIGR01329 239 I---KTLAIRIEKQQENARAIAMFLSTHPRVKK 268 (378)
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 2 24566666777777777777778777743
No 94
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.85 E-value=4e-20 Score=167.76 Aligned_cols=219 Identities=11% Similarity=0.023 Sum_probs=145.3
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++....+| +.++++.|++. .++++||+.++..++.+++++||+|++++..|++........ ....|
T Consensus 48 gnPt~~~lE----~~lA~l~g~~~-----~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~----~~~~g 114 (377)
T TIGR01324 48 GTLTHFALQ----DAMCELEGGAG-----CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIV----LKRMG 114 (377)
T ss_pred CCccHHHHH----HHHHHHhCCCc-----EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHH----HHhcC
Confidence 567888999 99999999865 366777778887788899999999999887665543211100 01112
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ ..++.+ +.+.+++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.|....++ .
T Consensus 115 i~v--~~~d~~------~~e~l~~~i~~-~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl-~ 184 (377)
T TIGR01324 115 VDI--TYYDPL------IGEDIATLIQP-NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL-E 184 (377)
T ss_pred cEE--EEECCC------CHHHHHHhcCC-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc-c
Confidence 112 222211 23789999887 8999999 7777 789999999999999999999999999988764332 2
Q ss_pred CCCCCccEEEecCCccCCCCCc---eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG---AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
+ ++|++++|.+||++|+.+ |+++.+++ ..+++..... ......+....+.+..+++.+
T Consensus 185 ~---gaDivv~S~tK~l~G~~d~~gG~v~~~~~--------------~~~~l~~~~~-~~G~~l~p~~a~~~~rgl~tl- 245 (377)
T TIGR01324 185 H---GVDISIQAGTKYLVGHSDIMIGTVVANAR--------------TWDQLREHSY-LMGQMVDADDAYTTLRGLRTL- 245 (377)
T ss_pred c---CceEEEecCceeccCCCCceEEEEEeCHH--------------HHHHHHHHHH-HhCCCCCHHHHHHHHhhhhhH-
Confidence 3 899999999999998753 77777663 2222221110 111122333333333444432
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
....++++..+..+.+.|++.|.|+.
T Consensus 246 -----~~R~~~~~~~a~~la~~L~~~p~v~~ 271 (377)
T TIGR01324 246 -----GVRLKQHQESSLAIAKWLSEQPEVAR 271 (377)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhCCCcCE
Confidence 33455555566667777777777764
No 95
>PLN02483 serine palmitoyltransferase
Probab=99.84 E-value=1.4e-19 Score=169.51 Aligned_cols=233 Identities=21% Similarity=0.174 Sum_probs=158.7
Q ss_pred ccCCCCCCCCcc-CCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcc
Q 022463 10 NKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 88 (297)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~ 88 (297)
++|+-+..+++. |+..+...++| +.+++++|.+. .+++++|..+|..++.+++++||+|++++..|.+..
T Consensus 129 ~~~g~~~~~sr~~~g~~~~~~ele----~~lA~~~g~~~-----ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~ 199 (489)
T PLN02483 129 KKYSASTCSSRVDGGTTKLHRELE----ELVARFVGKPA-----AIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIV 199 (489)
T ss_pred HHhCCCCCccccccCCcHHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHH
Confidence 345555445554 44567778888 99999999754 399999998888788889999999999999998875
Q ss_pred cccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh------cCC-----cEEEE--cC-CCCCCcccHHHHH
Q 022463 89 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FRP-----KLIVA--GA-SAYARLYDYERIR 154 (297)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~-----~~v~~--~~-~~~G~~~~~~~i~ 154 (297)
.. ++..|.+++.+ +.+ |.+++++.+++ .++ +++++ +. +..|...++++|.
T Consensus 200 ~~--------~~~~Ga~v~~~--~~~------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~ 263 (489)
T PLN02483 200 NG--------ARGSGATIRVF--QHN------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIV 263 (489)
T ss_pred HH--------HHHcCCeEEEE--eCC------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHH
Confidence 43 33444444433 322 45666665542 122 44444 33 3369999999999
Q ss_pred HHHHhcCCEEEEehhhhcccccc---------cCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhh
Q 022463 155 KVCNKQKAIMLADMAHISGLVAA---------GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYD 225 (297)
Q Consensus 155 ~la~~~g~~livD~a~~~g~~~~---------~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~ 225 (297)
++|++||+++|+|++|+.|.... +..+ .+.|+++.|++|++ |+.||+++.++ +
T Consensus 264 ~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~---~~~dI~~~SfSKs~-g~~GG~i~~~~--------------~ 325 (489)
T PLN02483 264 AVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDP---ADVDIMMGTFTKSF-GSCGGYIAGSK--------------E 325 (489)
T ss_pred HHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCc---ccCcEEEEecchhc-ccCceEEEcCH--------------H
Confidence 99999999999999998765431 1111 26799999999988 55789998877 3
Q ss_pred HHHHhhhcccCCC-CCCCchHHHHHHHHHHHHHhhhcC---hhhHHHHhhhhHHHHHhhccCCC
Q 022463 226 YEEKINQAVFPGL-QGGPHNHTITGLAVALKQVCTLIT---FSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 226 ~~~~~~~~~~~~~-~~t~~~~~~~al~~al~~~~~~~g---~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
+.+.+........ .++.+...+.++.++|+.+....+ ..+..++.++..+++.+.|+++.
T Consensus 326 li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G 389 (489)
T PLN02483 326 LIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMG 389 (489)
T ss_pred HHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCC
Confidence 4555443322111 234455566667788888764312 23345667788888888888763
No 96
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.84 E-value=6.2e-20 Score=167.16 Aligned_cols=218 Identities=15% Similarity=0.096 Sum_probs=147.6
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-ccccccceee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAVS 103 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~g 103 (297)
++...++| +.+++++|++. .++++||+.++..++.+++++||+|+++...|++.+..+.. ....++
T Consensus 53 ~p~~~~le----~~la~l~g~~~-----~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~---- 119 (380)
T TIGR01325 53 NPTVAAFE----ERIAALEGAER-----AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI---- 119 (380)
T ss_pred CchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC----
Confidence 45677777 99999999864 37788888888878888899999999988777665433321 111222
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
.+ ..++.+ |++.+++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+....++ .
T Consensus 120 -~v--~~v~~~------d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl-~ 188 (380)
T TIGR01325 120 -EV--SFVDPT------DLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL-K 188 (380)
T ss_pred -EE--EEECCC------CHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-h
Confidence 23 222322 78999999987 8999999 7777 799999999999999999999999998755432221 1
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++|+++|+. ||+++.+++ +.+.+...... ...+.+....+. +++.+.
T Consensus 189 ~---g~Divv~S~sK~l~g~g~~~gG~vv~~~~--------------~~~~l~~~~~~-~g~~~~p~~a~~---~l~~l~ 247 (380)
T TIGR01325 189 L---GADVVVYSATKHIDGQGRVMGGVIAGSEE--------------LMAEVAVYLRH-TGPAMSPFNAWV---LLKGLE 247 (380)
T ss_pred h---CCCEEEeeccceecCCCCeEEEEEEeCHH--------------HHHHHHHHHHh-hCCCCCHHHHHH---HHhccC
Confidence 2 79999999999998863 477777763 33333222111 111222222222 222222
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+....+++.+.+.++.+.|++.|.|+.+
T Consensus 248 ---tl~~r~~~~~~~a~~la~~L~~~p~v~~V 276 (380)
T TIGR01325 248 ---TLSLRMQKQFDSALAIAEWLQAQPQVQAV 276 (380)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 34555666777888888888888887753
No 97
>PRK15029 arginine decarboxylase; Provisional
Probab=99.84 E-value=6.1e-20 Score=176.64 Aligned_cols=229 Identities=16% Similarity=0.074 Sum_probs=162.5
Q ss_pred HHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeec
Q 022463 33 SLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 111 (297)
Q Consensus 33 ~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 111 (297)
+++++.+|++||++.. .+.++||+ +|.+++++.+++||.|+++.+.|-|.+.. +.+.|+....+.-
T Consensus 208 ~eAq~~aA~~fgA~~t-----~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~a--------l~L~ga~Pvyl~P 274 (755)
T PRK15029 208 GESEKYAARVFGADRS-----WSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQG--------LILTGAKPVYMVP 274 (755)
T ss_pred HHHHHHHHHHhCCCcE-----EEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH--------HHHcCCeEEEecc
Confidence 3455999999999873 77788884 88889999999999999999888887653 3445544444432
Q ss_pred ccCCCC---CcCC-----HHHHHHHhhhc---------CCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcc
Q 022463 112 RLNEST---GYID-----YDQLEKSATLF---------RPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 112 ~~~~~~---~~~d-----~~~l~~~l~~~---------~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g 173 (297)
..+ +. +.++ ++.+++++.++ +|+++++ +++.+|.+.++++|.++|++++++++||+||++.
T Consensus 275 ~~~-~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah 353 (755)
T PRK15029 275 SRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_pred ccc-ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECccccc
Confidence 222 22 2344 89999999752 1237777 6777899999999999999999999999999875
Q ss_pred cccccCCC--CCC-------CCcc-EEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCC
Q 022463 174 LVAAGVIP--SPF-------EYAD-VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGP 242 (297)
Q Consensus 174 ~~~~~~~~--~~~-------~~~D-~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~ 242 (297)
..-.+..+ .+. .++| +++.|+||+|.+... ++|.++.+.+ +. + .++++....-..+++|
T Consensus 354 ~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~-~i--------d-~~r~~~~l~~~qSTSP 423 (755)
T PRK15029 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRG-AI--------N-FSRFNQAYMMHATTSP 423 (755)
T ss_pred cccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCcc-cc--------C-HHHHHHHHHHHcCCCc
Confidence 42222111 111 3788 999999999999777 6676654300 00 1 2334433333337789
Q ss_pred chHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 243 HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 243 ~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+++.++++..|..++....| +...++..+++..|++.+.+++.
T Consensus 424 SY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~~ 466 (755)
T PRK15029 424 LYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_pred HHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999986314 44666677788888888877654
No 98
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.84 E-value=8.6e-20 Score=167.18 Aligned_cols=220 Identities=11% Similarity=0.086 Sum_probs=150.6
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++...++| +.+++++|.+. .+++++|+.++..++.+++++||+|+++...|++.+..... .+...|
T Consensus 62 ~~p~~~~Le----~~iA~~~g~~~-----~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~----~~~~~G 128 (400)
T PRK06234 62 GNPTSTEVE----NKLALLEGGEA-----AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNH----GLTRYG 128 (400)
T ss_pred CCccHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHH----HHhhCC
Confidence 457788888 99999999764 38888888887778888899999999998777766543321 112223
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc--CCEEEEehhhhcccccccC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~--g~~livD~a~~~g~~~~~~ 179 (297)
..+ +.++. .|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++ |+++++|++++.+.....+
T Consensus 129 ~~v--~~vd~------~d~e~l~~~i~~-~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l 199 (400)
T PRK06234 129 VEV--TFVDT------SNLEEVRNALKA-NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL 199 (400)
T ss_pred eEE--EEECC------CCHHHHHHHhcc-CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch
Confidence 223 33232 278999999987 8999999 7888 89999999999999997 9999999998876543222
Q ss_pred CCCCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCCCchHHHHHHHHHHH
Q 022463 180 IPSPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVALK 255 (297)
Q Consensus 180 ~~~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~al~~al~ 255 (297)
.. ++|++++|++|+++|+. ||+++++++ +.+.+........ ....+....+.+ +.
T Consensus 200 -~~---g~Divv~S~sK~l~g~g~~~gG~v~~~~~--------------~~~~l~~~~~~~~~g~~l~p~~a~l~---~~ 258 (400)
T PRK06234 200 -QL---GADVVVHSATKYLNGHGDVIAGFVVGKEE--------------FINQVKLFGIKDMTGSVIGPFEAFLI---IR 258 (400)
T ss_pred -hh---CCcEEEeeccccccCCCCceeEEEEecHH--------------HHHHHHHHHHHHhcCCCCCHHHHHHH---Hh
Confidence 11 78999999999998865 588888774 2332221100101 112222222222 22
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
.+. .++...+++.+.+.++.+.|++.|.|+.
T Consensus 259 ~l~---tl~~r~~~~~~na~~~a~~L~~~~~V~~ 289 (400)
T PRK06234 259 GMK---TLQIRMEKHCKNAMKVAKFLESHPAVEK 289 (400)
T ss_pred ccC---cHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence 222 3345566666788888888888887765
No 99
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.84 E-value=7.7e-20 Score=168.35 Aligned_cols=239 Identities=14% Similarity=0.011 Sum_probs=154.6
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-cccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~ 102 (297)
+++..+.+| +.++++.|++. .++++||++++.+++.+++++||+|+++...|++....+.. +...
T Consensus 67 ~~p~~~~Le----~~lA~l~g~~~-----av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~----- 132 (436)
T PRK07812 67 MNPTQDVVE----QRIAALEGGVA-----ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKL----- 132 (436)
T ss_pred CCchHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcC-----
Confidence 456777888 99999999876 38999999888878889999999999998777765433221 1111
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
| +..+.++ + ..|++.+++++++ +|++|++ +++| +|.+.|+++|.++||++|+++++|++|+.+.....+
T Consensus 133 G--i~v~~vd-d----~~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl- 203 (436)
T PRK07812 133 G--IEVSFVE-D----PDDLDAWRAAVRP-NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPL- 203 (436)
T ss_pred e--EEEEEEC-C----CCCHHHHHHhCCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCch-
Confidence 2 2233322 2 1389999999987 8999998 7777 799999999999999999999999999876554332
Q ss_pred CCCCCCccEEEecCCccCCCCCc--eEEEE-ecCchh---h---ccCCccc----------hhhHHHHhhhcccCCCCCC
Q 022463 181 PSPFEYADVVTTTTHKSLRGPRG--AMIFF-RKGVKE---I---NKQGKEV----------FYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~g--G~i~~-~~~~~~---~---~~~g~~~----------~~~~~~~~~~~~~~~~~~t 241 (297)
.+ ++|+++.|+||+++|+.+ |.+++ +..... + +...... ...+..+............
T Consensus 204 ~~---GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 280 (436)
T PRK07812 204 EH---GADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSA 280 (436)
T ss_pred hc---CCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCC
Confidence 22 899999999999987654 44444 332110 0 0000000 0000000000000011111
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 295 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~ 295 (297)
.+....+- .+.....+..+.+++.+.+.++.+.|++.|.|+.+ -.|.
T Consensus 281 l~p~~a~l------~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V-~yPg 327 (436)
T PRK07812 281 ISPFNAFL------IAQGLETLSLRIERHVANAQRVAEFLEARDEVASV-NYAG 327 (436)
T ss_pred CCHHHHHH------HhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEE-ECCC
Confidence 11121111 22222356777788888999999999999998876 3443
No 100
>PLN02509 cystathionine beta-lyase
Probab=99.84 E-value=9.3e-20 Score=168.48 Aligned_cols=220 Identities=15% Similarity=0.100 Sum_probs=147.8
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+.+| ++++++.+.+. .+.+++|+++.. ++..++++||+|+++...|+++...+... ....|
T Consensus 131 gnpt~~aLE----~~lA~leg~e~-----ai~~~SG~aAi~-~il~ll~~GD~VI~~~~~y~~t~~ll~~~----l~~~G 196 (464)
T PLN02509 131 GNPTRDALE----SLLAKLDKADR-----AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQV----VPRSG 196 (464)
T ss_pred CCHHHHHHH----HHHHHHhCCCE-----EEEeCcHHHHHH-HHHHHhCCCCEEEEcCCchhhHHHHHHHH----HHHCC
Confidence 446666777 89999998765 377788876654 45567899999999988777664332211 11112
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ +.++ ..|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.+.......
T Consensus 197 ~~v--~~vd------~~d~e~l~~ai~~-~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~- 266 (464)
T PLN02509 197 VVV--KRVN------TTNLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLE- 266 (464)
T ss_pred eEE--EEeC------CCCHHHHHHhCCc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChhh-
Confidence 222 2222 2378999999987 8999999 7888 7999999999999999999999999998776533221
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++||++|+. ||+++++++. +.+.+...... .....+....+.+..+|+
T Consensus 267 ~---gaDivv~S~tK~l~G~gdv~gG~v~~~~~~-------------l~~~~~~~~~~-~g~~l~p~~A~l~lr~L~--- 326 (464)
T PLN02509 267 L---GADIVMHSATKFIAGHSDVMAGVLAVKGEK-------------LAKEVYFLQNS-EGSGLAPFDCWLCLRGIK--- 326 (464)
T ss_pred c---CCcEEEecCcccccCCCccceeEEEeccHH-------------HHHHHHHHHHh-cCCCcCHHHHHHHHhhhh---
Confidence 2 79999999999999865 4777776641 22221111000 011122233333333333
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.++.+.+++.+.+.++.+.|++.|.|+.+
T Consensus 327 ---tL~~R~~r~~~nA~~la~~L~~~p~V~~V 355 (464)
T PLN02509 327 ---TMALRIEKQQENARKIAMYLSSHPRVKKV 355 (464)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHhcCCCccEE
Confidence 34556777888889999999999988754
No 101
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.84 E-value=5.6e-20 Score=166.50 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=158.5
Q ss_pred ccccc-CCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCC
Q 022463 7 VMTNK-YSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHG 85 (297)
Q Consensus 7 ~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~ 85 (297)
.|.+. |++.-.|+..|.+++...++| +.+++++|.++ .+.++||+.+...+....++|||+| +.+.|.
T Consensus 51 aMs~~q~a~~~~GDe~yag~~s~~~lE----~~va~~~G~~~-----av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f 119 (450)
T TIGR02618 51 AMSDKQWAGLMMGDEAYAGSRNFYHLE----RTVRELYGFKY-----VVPTHQGRGAENLLSQIAIKPGDYV--PGNMYF 119 (450)
T ss_pred HHHHHHHHHhhhcchhhcCCCcHHHHH----HHHHHHHCCCe-----EEEcCCHHHHHHHHHHhCCCCcCEE--CCceeH
Confidence 34555 555566778899999999999 88899999987 3777888877443555568999987 444443
Q ss_pred CcccccccccccccceeeeeeEeeecc-------cCCCCCcCCHHHHHHHhhhc---CCcEEEE-cCCC-C-CCc---cc
Q 022463 86 GHLSHGYQTDTKKISAVSIFFETMPYR-------LNESTGYIDYDQLEKSATLF---RPKLIVA-GASA-Y-ARL---YD 149 (297)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~v~~~-------~~~~~~~~d~~~l~~~l~~~---~~~~v~~-~~~~-~-G~~---~~ 149 (297)
...... +...|..+.-++.+ .++.++.+|+++|++.|++. ++++|.+ .++| . |.+ .+
T Consensus 120 ~Tt~ah-------Ie~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~ 192 (450)
T TIGR02618 120 TTTRYH-------QEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMAN 192 (450)
T ss_pred HHHHHH-------HHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHH
Confidence 332221 12222211111111 12356899999999999862 2345555 5556 4 566 45
Q ss_pred HHHHHHHHHhcCCEEEEehhhhcccccc------cCCCCC--------CCCccEEEecCCccCCCCCceEEEEecCchhh
Q 022463 150 YERIRKVCNKQKAIMLADMAHISGLVAA------GVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEI 215 (297)
Q Consensus 150 ~~~i~~la~~~g~~livD~a~~~g~~~~------~~~~~~--------~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~ 215 (297)
+++|.++|++||+++|.|+||+.+.-.+ +....+ +.++|.+++|++|..++|.||+|.++++
T Consensus 193 l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~---- 268 (450)
T TIGR02618 193 MREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDD---- 268 (450)
T ss_pred HHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCH----
Confidence 7899999999999999999999864221 112222 3379999999999999999999998875
Q ss_pred ccCCccchhhHHHHhhhc--ccCCC--CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 216 NKQGKEVFYDYEEKINQA--VFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 216 ~~~g~~~~~~~~~~~~~~--~~~~~--~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++.++.... .+.+. .|......+.++..+|++..+..-.+ +....+++|-+.|.+.
T Consensus 269 ---------~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~----~r~~~a~~La~~L~~~ 328 (450)
T TIGR02618 269 ---------EMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIE----HRVKQVRYLGDKLKAA 328 (450)
T ss_pred ---------HHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHC
Confidence 455554433 12332 44445567788888888876542222 2333455555555554
No 102
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.84 E-value=1.5e-19 Score=167.00 Aligned_cols=164 Identities=19% Similarity=0.286 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh---------cCCCCeEEEecCCCCCcccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---------LKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~---------~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
+...++| +.+++++|++. .++++||++++..++.++ ++|||+|+++..+|.+...+..
T Consensus 63 ~~~~~fe----~~lA~~~g~~~-----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~---- 129 (438)
T PRK15407 63 RFNDAFE----KKLAEFLGVRY-----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII---- 129 (438)
T ss_pred hhHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH----
Confidence 4567777 88999999875 366677887777666654 5899999999988877755443
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhccccc
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVA 176 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~ 176 (297)
..| ..+++++++++++.+|++.+++.+++ +|++|++.+ .+|...++++|.++|+++|++||+|++|+.|...
T Consensus 130 ----~~G--~~pv~vdvd~~~~~id~~~le~~i~~-~tkaVi~~~-~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~ 201 (438)
T PRK15407 130 ----QNG--LVPVFVDVELPTYNIDASLLEAAVSP-KTKAIMIAH-TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTY 201 (438)
T ss_pred ----HcC--CEEEEEecCCCcCCcCHHHHHHHcCc-CCeEEEEeC-CCCChhhHHHHHHHHHHCCCEEEEECccchhhhc
Confidence 223 33455566656788999999999987 899988832 3678899999999999999999999999999887
Q ss_pred ccCCCCCCCCccEEEecCC--ccCCCCCceEEEEecCc
Q 022463 177 AGVIPSPFEYADVVTTTTH--KSLRGPRGAMIFFRKGV 212 (297)
Q Consensus 177 ~~~~~~~~~~~D~~~~s~~--K~l~gp~gG~i~~~~~~ 212 (297)
.+..... ..|+.++|++ |.+....||+++++++.
T Consensus 202 ~g~~~G~--~gd~~~fSf~~~k~~~~geGG~l~t~d~~ 237 (438)
T PRK15407 202 DGRMTGT--FGDIATLSFYPAHHITMGEGGAVFTNDPL 237 (438)
T ss_pred CCeeeec--cCceEEEeCCCCCCccccCceEEEECCHH
Confidence 6544432 2477777776 76776678999998864
No 103
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.84 E-value=2.1e-19 Score=164.66 Aligned_cols=218 Identities=17% Similarity=0.137 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
.++++++++++++++|.+. .+++++|++++..++.++++|||+|++++..|++...... ..+..+
T Consensus 86 ~~l~~~l~~~la~~~g~~~-----~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~--------~~~~~~-- 150 (397)
T PRK06939 86 QDLHKELEEKLAKFLGTED-----AILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVR--------LCKAKR-- 150 (397)
T ss_pred cHHHHHHHHHHHHHhCCCc-----EEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHH--------hcCCce--
Confidence 4555666699999999763 4999999888887888889999999999988877644322 222222
Q ss_pred eecccCCCCCcCCHHHHHHHhhh---c--CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC-
Q 022463 109 MPYRLNESTGYIDYDQLEKSATL---F--RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI- 180 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~---~--~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~- 180 (297)
+.++ ..|++++++.+++ . ++++|+. +..+ +|...++++|.++|++||+++|+|++|+.|.......
T Consensus 151 ~~~~------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~ 224 (397)
T PRK06939 151 YRYA------NNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRG 224 (397)
T ss_pred EEeC------CCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCC
Confidence 2222 1478888888864 2 5666766 3333 7899999999999999999999999997665432110
Q ss_pred ----CCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCCCchHHHHHHHHHHH
Q 022463 181 ----PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVALK 255 (297)
Q Consensus 181 ----~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~al~~al~ 255 (297)
.....++|++++|++|+++|+++|+++.+++ +.+.+.....+.. .++++....+++.++++
T Consensus 225 ~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~ 290 (397)
T PRK06939 225 TVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKE--------------VIDWLRQRSRPYLFSNSLAPAIVAASIKVLE 290 (397)
T ss_pred HHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHH--------------HHHHHHHhCccccccCCCCHHHHHHHHHHHH
Confidence 0001157899999999998888899998773 3444433222222 33344445566677787
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.+.. .++++++.+++.+++.+.|+++
T Consensus 291 ~~~~---~~~~~~~~~~~~~~l~~~L~~~ 316 (397)
T PRK06939 291 LLEE---SDELRDRLWENARYFREGMTAA 316 (397)
T ss_pred HHhc---CHHHHHHHHHHHHHHHHHHHHc
Confidence 7642 3567778888888888888765
No 104
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.84 E-value=1.1e-19 Score=165.91 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=122.3
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++...++| +.+++++|++. .++++||+.+...++. ++++||+|+++...|++.+..+... +...|
T Consensus 52 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~----~~~~G 117 (390)
T PRK08064 52 GNPTREALE----DIIAELEGGTK-----GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEV----LSRFG 117 (390)
T ss_pred CChhHHHHH----HHHHHHhCCCC-----eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHH----HHHcC
Confidence 446677777 99999999875 3889999987665554 7899999999998888776544322 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+..+ +. .|++.+++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+.....+ .
T Consensus 118 ~~v~~v--~~------~d~~~l~~~l~~-~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~ 187 (390)
T PRK08064 118 IEHTFV--DM------TNLEEVAQNIKP-NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-D 187 (390)
T ss_pred CEEEEE--CC------CCHHHHHHhcCC-CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-h
Confidence 223333 32 278999999987 8999999 7888 899999999999999999999999998766543222 2
Q ss_pred CCCCCccEEEecCCccCCCCCc---eEEEEec
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG---AMIFFRK 210 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~ 210 (297)
. ++|++++|++|+++|+.| |++++++
T Consensus 188 ~---g~Divv~S~tK~~~G~~~~laG~~v~~~ 216 (390)
T PRK08064 188 L---GADVVLHSATKFLAGHSDVLAGLAVVKD 216 (390)
T ss_pred h---CCcEEEeecceeccCCccceeEEEEeCC
Confidence 2 799999999999998875 7777765
No 105
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.84 E-value=6.2e-20 Score=167.59 Aligned_cols=220 Identities=18% Similarity=0.133 Sum_probs=145.6
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.++..+++| +.+++++|++. .+++++|++++..++.+++++||+|+++...|++.+..+... ....|
T Consensus 59 ~~p~~~~le----~~la~l~g~~~-----~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~----~~~~G 125 (390)
T PRK08133 59 TNPTVTMFQ----ERLAALEGAEA-----CVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKI----FARFG 125 (390)
T ss_pred CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHH----HHHcC
Confidence 346677777 89999999875 377777878887788888999999999988887765433211 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+++++++.+ |++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+....++ .
T Consensus 126 --~~v~~vd~~------d~~~l~~~i~~-~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl-~ 195 (390)
T PRK08133 126 --IETTFVDLT------DLDAWRAAVRP-NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL-K 195 (390)
T ss_pred --cEEEEECCC------CHHHHHHhcCc-CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch-h
Confidence 223333332 78999999987 8999999 7888 899999999999999999999999998765443222 1
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++|+++++. ||+++.+++ ..+.+...... .....+....+.+..+++
T Consensus 196 ~---g~Divv~S~sK~~~g~g~~~GG~vv~~~~--------------~~~~~~~~~~~-~g~~~~~~~a~~~l~gl~--- 254 (390)
T PRK08133 196 L---GADVVIHSATKYLDGQGRVLGGAVVGSKE--------------LMEEVFGFLRT-AGPTLSPFNAWVFLKGLE--- 254 (390)
T ss_pred h---CCcEEEeecceeecCCcceEeEEEEcCHH--------------HHHHHHHHHHH-hCCCCCHHHHHHHHcccc---
Confidence 2 78999999999997753 477777663 22222111100 011122222222222222
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+....+++.+.+.++.+.|++.|.|+.+
T Consensus 255 ---tl~~R~~~~~~~a~~la~~L~~~p~v~~v 283 (390)
T PRK08133 255 ---TLSLRMEAHSANALALAEWLEAHPGVERV 283 (390)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhCCCeeEE
Confidence 23444455556777778888888877654
No 106
>PRK05939 hypothetical protein; Provisional
Probab=99.83 E-value=1.4e-19 Score=165.26 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=123.4
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+.+| +.++++.|.++ .+.++||++++..++.++++|||+|+++...|+++...+..+...++
T Consensus 45 g~p~~~~lE----~~la~leg~~~-----~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~---- 111 (397)
T PRK05939 45 GTPTTAALE----AKITKMEGGVG-----TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGV---- 111 (397)
T ss_pred CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCC----
Confidence 668889999 99999999876 39999999888778888999999999998888776544332222232
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
.+..+ +. .|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.+.. .+...
T Consensus 112 -~v~~v--~~------~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-~~~~~ 180 (397)
T PRK05939 112 -EVTMV--DA------TDVQNVAAAIRP-NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-FRPKD 180 (397)
T ss_pred -EEEEE--CC------CCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-cCccc
Confidence 23233 22 378999999987 8999999 7788 79999999999999999999999999877642 22222
Q ss_pred CCCCCccEEEecCCccCCCCCc--eEEEEe
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG--AMIFFR 209 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g--G~i~~~ 209 (297)
. ++|+++.|++|+++|+.. |.++..
T Consensus 181 ~---gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 181 V---GASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred c---CCEEEEecCeecccCCCCeEEEEEec
Confidence 2 899999999999988554 444443
No 107
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.83 E-value=9e-20 Score=164.80 Aligned_cols=218 Identities=16% Similarity=0.117 Sum_probs=146.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| ++++++.+.+. .+++++|++++..++ .++++||+|+++...+++...........+ +
T Consensus 52 ~~p~~~~le----~~lA~leg~~~-----~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~----~ 117 (364)
T PRK07269 52 KNPTRAKLE----ETLAAIESADY-----ALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEG----R 117 (364)
T ss_pred CCccHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcC----c
Confidence 457788899 99999998765 366677777776555 467999999999866655432111100000 0
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+. .++..|++++++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+...
T Consensus 118 --~~--------~~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~----- 181 (364)
T PRK07269 118 --FH--------FTYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ----- 181 (364)
T ss_pred --EE--------EEecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence 10 0134589999999987 8999998 7888 799999999999999999999999997655432
Q ss_pred CCCC-CccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 182 SPFE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 182 ~~~~-~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
.|+. ++|++++|++|+++|+. ||+|+++++ ++.+++..... ......+....+ .++..+
T Consensus 182 ~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~-------------~l~~~~~~~~~-~~G~~~s~~~a~---l~~~~L 244 (364)
T PRK07269 182 RPIELGADIVLHSATKYLSGHNDVLAGVVVTNDL-------------ELYEKLFYNLN-TTGAVLSPFDSY---LLMRGL 244 (364)
T ss_pred CchhhCCcEEEecCceeccCCCcccceEEEeCcH-------------HHHHHHHHHHH-HhCCCCCHHHHH---HHHcCC
Confidence 1222 89999999999998855 577777653 23333321110 001112212221 222222
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCccccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDK 291 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 291 (297)
. .++...+++.+.+.++.+-|++.|.|+.+.
T Consensus 245 ~---tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ 275 (364)
T PRK07269 245 K---TLSLRMERSTANAQEVVAFLKKSPAVKEVL 275 (364)
T ss_pred C---cHHHHHHHHHHHHHHHHHHHHhCCCccEEe
Confidence 2 567777888888899999999999887654
No 108
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.83 E-value=1.2e-19 Score=164.82 Aligned_cols=218 Identities=8% Similarity=0.005 Sum_probs=145.2
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccc-cccccccceee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGY-QTDTKKISAVS 103 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~~~~~~g 103 (297)
++....+| +.++++.+.+. .+++.||+.++..++.+++++||+|++++..|++...... .+...+++
T Consensus 60 npt~~~Le----~~iA~le~~~~-----~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~--- 127 (394)
T PRK09028 60 TPTHFAFQ----AAIVELEGGAG-----TALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIE--- 127 (394)
T ss_pred CchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceE---
Confidence 46677888 88888887753 2666667777776888899999999999877755543221 11112222
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+ ..++. .|.+.+++.+++ +|++|++ +++| +|.+.|+++|.++||++|+++++|++++.+.. .....
T Consensus 128 --v--~~v~~------~~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-~~Pl~ 195 (394)
T PRK09028 128 --T--TYYDP------MIGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-SRPFE 195 (394)
T ss_pred --E--EEECC------CCHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-CCccc
Confidence 2 22221 145789999887 8999999 7888 78999999999999999999999999987642 22222
Q ss_pred CCCCCccEEEecCCccCCCCCc---eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG---AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
+ |+|+++.|.+||++|+.. |+++.++ ++.+.+..... ......+....+-+..+|+
T Consensus 196 ~---GaDivv~S~tK~l~Gh~d~~~G~~~~~~--------------~~~~~l~~~~~-~~G~~~~p~~a~l~~rgl~--- 254 (394)
T PRK09028 196 M---GVDISIQAATKYIVGHSDVMLGTATANE--------------KHWDQLREHSY-LMGQCTSPDDVYLAMRGLR--- 254 (394)
T ss_pred c---CceEEEEeCCeEecCCCCEEEEEEECCH--------------HHHHHHHHHHH-hcCCCCCHHHHHHHHcccC---
Confidence 3 899999999999999864 6554444 22222221110 1112223333333323332
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+....+++.+.+..+.+-|++.|.|+.+
T Consensus 255 ---TL~lR~~~~~~na~~la~~L~~~p~v~~V 283 (394)
T PRK09028 255 ---TLGVRLAQHEKNALKVANWLATRPEVDHV 283 (394)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHhcCCCccEE
Confidence 44556667777888888888899888764
No 109
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.83 E-value=1.5e-19 Score=164.28 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=121.1
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++....+| ++++++.|++. .++++||+.+..+ +.++++|||+|+++...|++.+..+... ....|
T Consensus 48 ~~p~~~~Le----~~la~l~g~~~-----al~~~SG~~Al~~-~l~~l~pGd~Vi~~~~~y~~t~~~~~~~----~~~~g 113 (380)
T PRK06176 48 GNPTRFALE----ELIADLEGGVK-----GFAFASGLAGIHA-VFSLFQSGDHVLLGDDVYGGTFRLFDKV----LVKNG 113 (380)
T ss_pred CChhHHHHH----HHHHHHhCCCC-----EEEECCHHHHHHH-HHHHcCCCCEEEEcCCChhHHHHHHHHH----HHhcC
Confidence 457788888 99999999876 3899999987664 4457899999999987777665433221 11112
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+....++ ..|++++++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+...... .
T Consensus 114 --i~v~~vd------~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~-~ 183 (380)
T PRK06176 114 --LSCTIID------TSDLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPL-L 183 (380)
T ss_pred --eEEEEcC------CCCHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCcc-c
Confidence 2223222 2389999999987 8999999 7888 799999999999999999999999998765433222 2
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEec
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRK 210 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~ 210 (297)
+ ++|++++|++|+++||. ||++++++
T Consensus 184 ~---gaDivv~S~tK~l~g~~d~~gG~vv~~~ 212 (380)
T PRK06176 184 L---GADIVVHSGTKYLGGHSDVVAGLVTTNN 212 (380)
T ss_pred c---CCCEEEecCceeccCCccceeeEEEecH
Confidence 2 89999999999999875 57777765
No 110
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.83 E-value=8.1e-19 Score=158.81 Aligned_cols=252 Identities=17% Similarity=0.138 Sum_probs=164.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCCCCC----cceEEecCChHHHHHHHHHhc--------CCC-----C-eEEEecCC
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRLDPEKW----GVNVQSLSGSPSNFQVYTALL--------KPH-----D-RIMALDLP 83 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~----~~~v~~~sG~~~~~~~~~~~~--------~~g-----d-~Vl~~~~~ 83 (297)
+...+...++|+++.+++++++|.+.+.. +..++.+.||.+|+.++.+.. ..| . .|++++..
T Consensus 71 ~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a 150 (373)
T PF00282_consen 71 WEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA 150 (373)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS
T ss_pred cccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 34567899999999999999999983210 134555555567765543331 012 2 46666767
Q ss_pred CCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc--C---CcEEEE--cCCCCCCcccHHHHHHH
Q 022463 84 HGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--R---PKLIVA--GASAYARLYDYERIRKV 156 (297)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~---~~~v~~--~~~~~G~~~~~~~i~~l 156 (297)
|.|.... +.+.|..++.| +.+ +++++|+++|+++|.+. + |-+|+. +.+++|.+.|+++|.++
T Consensus 151 H~S~~Ka--------a~~lGlg~~~I--~~~-~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i 219 (373)
T PF00282_consen 151 HYSIEKA--------ARILGLGVRKI--PTD-EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADI 219 (373)
T ss_dssp -THHHHH--------HHHTTSEEEEE---BB-TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHH
T ss_pred ccHHHHh--------cceeeeEEEEe--cCC-cchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhh
Confidence 8777543 44445444445 566 57899999999998752 2 323444 46668999999999999
Q ss_pred HHhcCCEEEEehhhhcccccccCCCC-C--CCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHh--
Q 022463 157 CNKQKAIMLADMAHISGLVAAGVIPS-P--FEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKI-- 230 (297)
Q Consensus 157 a~~~g~~livD~a~~~g~~~~~~~~~-~--~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~-- 230 (297)
|+++++++|||+|++......+.... - ...+|.++.++|||+..|.+ |+++++++...+....... .|....
T Consensus 220 ~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~--~Yl~~~~~ 297 (373)
T PF00282_consen 220 CEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINA--DYLGNDDR 297 (373)
T ss_dssp HHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEE--TCTT-S-S
T ss_pred ccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccCh--hhhccccc
Confidence 99999999999997664443222211 1 23799999999999999999 9999988643210000000 111100
Q ss_pred -----hhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 231 -----NQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 231 -----~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
-........++. -...+.++.+++.+... |+.+..++..+++++|.+.|++.+.++
T Consensus 298 ~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~-G~~~~i~~~~~~a~~l~~~l~~~~~~e 358 (373)
T PF00282_consen 298 ESDESYDYGDYTLQGSR-RFRALKLWATLKSLGRE-GYRERIRRCIELARYLADRLRKDPRFE 358 (373)
T ss_dssp SS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred ccccccccccccccccc-cchHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 001112234555 45567888999999988 999999999999999999999999866
No 111
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.83 E-value=2.3e-19 Score=167.08 Aligned_cols=242 Identities=13% Similarity=0.068 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh-cCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
..+...+.++++++++|++.++ +.+++|++ +..+++.++ ..+||+|+++..+|+++...+..+. ...|.+
T Consensus 110 ~~~~~~e~~~~la~l~g~~~~~----v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~----~~~G~~ 181 (447)
T PRK00451 110 TLQAIFEYQTMICELTGMDVAN----ASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYL----KGQGIE 181 (447)
T ss_pred HHHHHHHHHHHHHHHhCCCcce----EEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHH----HhCCcE
Confidence 3444445557899999998753 88888885 444466666 4799999999988988765543221 112323
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEE--ehhhhcccccccCCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLA--DMAHISGLVAAGVIPS 182 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~liv--D~a~~~g~~~~~~~~~ 182 (297)
++.+ +.+ .+ .+|++++++.+++ +|++|++ +++.+|.+.|+++|.++|+++|+++++ |.. +.|..... ..+
T Consensus 182 ~~~v--~~~-~~-~~d~~~l~~~i~~-~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~-~~~ 254 (447)
T PRK00451 182 VVEV--PYE-DG-VTDLEALEAAVDD-DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPP-GEY 254 (447)
T ss_pred EEEe--cCC-CC-CCCHHHHHHhcCC-CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCc-ccC
Confidence 4344 555 34 8999999999987 8999988 664589999999999999999999998 644 44444322 223
Q ss_pred CCCCccEEEecCCcc-----CCCCCceEEEEecCchhh---ccCCccchhh----HHHHh--hhcccCCCCCCCch----
Q 022463 183 PFEYADVVTTTTHKS-----LRGPRGAMIFFRKGVKEI---NKQGKEVFYD----YEEKI--NQAVFPGLQGGPHN---- 244 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~-----l~gp~gG~i~~~~~~~~~---~~~g~~~~~~----~~~~~--~~~~~~~~~~t~~~---- 244 (297)
++|++++|++|| ++||+.|++++++++... ...|++.... +...+ .........++.+.
T Consensus 255 ---~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (447)
T PRK00451 255 ---GADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQ 331 (447)
T ss_pred ---CCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccH
Confidence 899999999986 677855999988865322 1222221100 00000 00000000112221
Q ss_pred -HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 245 -HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 245 -~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
....+...+++.+.+. |++++.++...+++++.++|++++.++
T Consensus 332 ~~~~~aaa~~l~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~~g~~ 375 (447)
T PRK00451 332 ALNALAAAIYMSLLGPE-GLRELAEQNHQKAHYLAERLAEIGGVE 375 (447)
T ss_pred HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHhhcCCEE
Confidence 1213334456777777 999999999999999999999987654
No 112
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.83 E-value=2.3e-19 Score=160.97 Aligned_cols=228 Identities=15% Similarity=0.122 Sum_probs=145.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
..+...+++ +.+++++| +. + .+++++|+.++..++.+++++||+|+++...|.+....... ..+.|
T Consensus 30 ~~~~~~~l~----~~~a~~~g-~~-~---~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~-----~~~~g 95 (338)
T cd06502 30 EDPTTAKLE----ARAAELFG-KE-A---ALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAP-----EFLSG 95 (338)
T ss_pred CCHHHHHHH----HHHHHHhC-CC-e---EEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcH-----HHHcC
Confidence 344555666 89999999 33 2 46667777788778888899999999999888766432210 11233
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhh------cCCcEEEE-cCCCCCC---cccHHHHHHHHHhcCCEEEEehhhhcc
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATL------FRPKLIVA-GASAYAR---LYDYERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~~v~~-~~~~~G~---~~~~~~i~~la~~~g~~livD~a~~~g 173 (297)
.++..+ +.+ ++.+|++++++++++ .++++|++ +++|+|. ..++++|.++|+++|+++|+|+||..+
T Consensus 96 ~~~~~v--~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~ 171 (338)
T cd06502 96 VKLLPV--PGE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLAN 171 (338)
T ss_pred ceEEee--cCC--CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHH
Confidence 334333 443 367999999999974 26888888 6777774 355678999999999999999998544
Q ss_pred ccc-ccCCCCCC-CCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHH
Q 022463 174 LVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLA 251 (297)
Q Consensus 174 ~~~-~~~~~~~~-~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~ 251 (297)
... .+...... .++|+++.|+||+++.|.|++++.+++ +.+.+.....+. .++.+...+ +..
T Consensus 172 ~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~-~~~ 235 (338)
T cd06502 172 AAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRD--------------FIARARRRRKQA-GGGMRQSGF-LAA 235 (338)
T ss_pred HHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHH--------------HHHHHHHHHHHh-CCChhhHHH-HHH
Confidence 221 11110000 268999999999998776666666663 333333221110 112122222 223
Q ss_pred HHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 252 VALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 252 ~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+++..+... ++.+..++...+++++.+.|++.+.
T Consensus 236 a~~~~L~~~-~~~~~~~~~~~~~~~l~~~L~~~~~ 269 (338)
T cd06502 236 AGLAALEND-LWLRRLRHDHEMARRLAEALEELGG 269 (338)
T ss_pred HHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444444 5666778888888999999987654
No 113
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.83 E-value=2.2e-19 Score=163.55 Aligned_cols=221 Identities=18% Similarity=0.152 Sum_probs=147.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+.++ ++++++.|.+. .+++++|+.++..++.++++|||+|+++...|++.+..+..+...+ +
T Consensus 50 ~~pt~~~L~----~~lA~l~g~~~-----~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~----g 116 (386)
T PRK08045 50 GNPTRDVVQ----RALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG----C 116 (386)
T ss_pred CCccHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhC----C
Confidence 446677778 99999999642 2555556667766788889999999999888876554333221111 1
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+.... ++ ..|++.+++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+.....+ .
T Consensus 117 --i~v~~--vd----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl-~ 186 (386)
T PRK08045 117 --YRVLF--VD----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL-A 186 (386)
T ss_pred --eEEEE--eC----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch-h
Confidence 11121 22 3588999999987 8999999 7888 799999999999999999999999998776543222 2
Q ss_pred CCCCCccEEEecCCccCCCCCc---eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG---AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|++||++|+.+ |+++++++ ++.+++..... ......+....+.+..+|+
T Consensus 187 ~---gaDivv~S~tK~l~G~~d~~~G~vi~~~~-------------~~~~~l~~~~~-~~g~~~~p~~~~l~~rgl~--- 246 (386)
T PRK08045 187 L---GADLVLHSCTKYLNGHSDVVAGVVIAKDP-------------DVVTELAWWAN-NIGVTGGAFDSYLLLRGLR--- 246 (386)
T ss_pred h---CCCEEEeecceeccCCCCceeEEEEeCcH-------------HHHHHHHHHHH-hcCCCCCHHHHHHHHhhhc---
Confidence 2 899999999999998774 77766543 23332221111 1111223333333334443
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.++...+++.+.+..+.+-|++.|.|+.+
T Consensus 247 ---tl~~R~~~~~~na~~la~~L~~~p~v~~V 275 (386)
T PRK08045 247 ---TLVPRMELAQRNAQAIVKYLQTQPLVKKL 275 (386)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHcCCCEeEE
Confidence 34556666677777777778888887754
No 114
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.83 E-value=7.3e-19 Score=158.86 Aligned_cols=217 Identities=17% Similarity=0.102 Sum_probs=147.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
+...+++ +.++++++.+. .+++++|+++++.++.+++++||+|+++...|++...... ..|..
T Consensus 61 ~~~~~l~----~~la~~~~~~~-----~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~--------~~g~~ 123 (360)
T TIGR00858 61 PLHEELE----EELAEWKGTEA-----ALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCR--------LSGAR 123 (360)
T ss_pred HHHHHHH----HHHHHHhCCCC-----EEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHH--------hcCCc
Confidence 4444555 88889888643 4999999977766778888999999999887777654322 22222
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhc---CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLF---RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~---~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
+..+ + .+|++.+++.+++. ++++|++ +..+ +|...|+++|.++|+++|+++|+|++|+.+..+....
T Consensus 124 ~~~~--~------~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~ 195 (360)
T TIGR00858 124 VRRY--R------HNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGR 195 (360)
T ss_pred eEEe--c------CCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCC
Confidence 3222 2 25889999998752 3667776 4444 7889999999999999999999999998765432210
Q ss_pred ----CCCC--CCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCCCchHHHHHHHHH
Q 022463 181 ----PSPF--EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVA 253 (297)
Q Consensus 181 ----~~~~--~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~al~~a 253 (297)
.... .+.|+++.|++|+++ +.||+++.++ ++.+.+.....+.. .++.+...++++.++
T Consensus 196 ~~~~~~~~~~~~~~i~i~s~sK~~~-~~gG~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 260 (360)
T TIGR00858 196 GTLEHFGLKPEPVDIQVGTLSKALG-SYGAYVAGSQ--------------ALIDYLINRARTLIFSTALPPAVAAAALAA 260 (360)
T ss_pred chHHhcCCCccCCcEEEEechhhhh-ccCcEEEcCH--------------HHHHHHHHhCccceecCCCCHHHHHHHHHH
Confidence 0001 257899999999884 5678888776 33443332222211 223444556677788
Q ss_pred HHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 254 LKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 254 l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
++.+.. .+..+++.+++.+++.+.|++++
T Consensus 261 l~~~~~---~~~~~~~~~~~~~~l~~~L~~~~ 289 (360)
T TIGR00858 261 LELIQE---EPWRREKLLALIARLRAGLEALG 289 (360)
T ss_pred HHHHhh---CHHHHHHHHHHHHHHHHHHHHcC
Confidence 876642 35678888889999999888764
No 115
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.82 E-value=9.1e-19 Score=159.10 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=119.1
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecC-ChHHHHHHHHHh-cCCCCeEEEecCCCCCccccccccccccccee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~s-G~~~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
.+...++| +++++++|.+. +++++ |++++..++.++ ++|||+|+++..+|.+...++. ..
T Consensus 30 g~~~~~~e----~~la~~~g~~~------~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~--------~~ 91 (376)
T TIGR02379 30 GPFSRRCE----TWLENRTGTKK------ALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV--------LR 91 (376)
T ss_pred cHHHHHHH----HHHHHHhCCCe------EEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH--------Hc
Confidence 45667777 88889988865 54544 445665567777 8999999999988877754432 22
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
| .++++++++++++.+|++++++++++ +|++|+.+ +.+|...|+++|.++|++||+++|+|++|+.|....+....
T Consensus 92 G--~~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~-~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g 167 (376)
T TIGR02379 92 G--AKIVFVDIRPDTMNIDETLIESAITH-RTKAIVPV-HYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALG 167 (376)
T ss_pred C--CEEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEe-CCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccC
Confidence 3 33455567766688999999999987 89998762 13799999999999999999999999999988653222222
Q ss_pred CCCCccEEEecCC--ccCC-CCCceEEEEecC
Q 022463 183 PFEYADVVTTTTH--KSLR-GPRGAMIFFRKG 211 (297)
Q Consensus 183 ~~~~~D~~~~s~~--K~l~-gp~gG~i~~~~~ 211 (297)
+ ..|+.++|+| |.+. |+.||+++++++
T Consensus 168 ~--~~~~~~fSf~~~K~l~~g~~gG~v~~~~~ 197 (376)
T TIGR02379 168 S--IGHLGTFSFHETKNYTSGGEGGALLINDQ 197 (376)
T ss_pred C--CCCEEEEeCCCCCcCcccCCceEEEECCH
Confidence 1 3477788876 4443 568898888754
No 116
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.82 E-value=4.8e-19 Score=163.35 Aligned_cols=235 Identities=16% Similarity=0.089 Sum_probs=153.6
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-ccccccceee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAVS 103 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~g 103 (297)
++....+| +.++++.|.+. .++++||++++..++.++++|||+|+++...|++....+.. +...+
T Consensus 62 ~p~~~~le----~~lA~l~g~~~-----al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G----- 127 (427)
T PRK05994 62 NPTNAVLE----ERVAALEGGTA-----ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFG----- 127 (427)
T ss_pred CccHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcC-----
Confidence 45677788 89999999876 38899999888888888999999999999888776543321 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+.++.++. .|++++++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++|+.+.....+ .
T Consensus 128 --~~v~~vd~------~d~~~l~~ai~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl-~ 197 (427)
T PRK05994 128 --WQVRWADA------DDPASFERAITP-RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPI-E 197 (427)
T ss_pred --cEEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCcc-c
Confidence 22232222 278999999987 8999999 7778 799999999999999999999999999876543222 2
Q ss_pred CCCCCccEEEecCCccCCCCCc---eEEEEecCchh---hc----cC-----Cccchh-hHH-------HHhhhcccCCC
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG---AMIFFRKGVKE---IN----KQ-----GKEVFY-DYE-------EKINQAVFPGL 238 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~~~~~---~~----~~-----g~~~~~-~~~-------~~~~~~~~~~~ 238 (297)
. ++|++++|++|+++|+.+ |+++.+..... +. .. |+.... ++. .+..... ..
T Consensus 198 ~---gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 272 (427)
T PRK05994 198 H---GADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLR--DL 272 (427)
T ss_pred c---CCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHH--hc
Confidence 2 899999999999988765 44443332110 00 00 000000 000 0000000 11
Q ss_pred CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCCC
Q 022463 239 QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 295 (297)
Q Consensus 239 ~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~ 295 (297)
....+.... +..++.+. .++.+.+++.+.+.++.+.|++.|.|+.+ -.|.
T Consensus 273 G~~~~~~~A---~l~~~~l~---tL~~r~~~~~~~a~~la~~L~~~p~v~~v-~yP~ 322 (427)
T PRK05994 273 GPAISPFNA---FLILTGIE---TLPLRMQRHSDNALAVAEWLKGHPKVSWV-NYAG 322 (427)
T ss_pred CCCCCHHHH---HHHHcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCccEE-ECCC
Confidence 111121111 12222222 56777788888999999999999998865 3443
No 117
>PRK06460 hypothetical protein; Provisional
Probab=99.82 E-value=5.9e-19 Score=160.39 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=142.5
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.++..+++| +.+++++|++.+ +++++|+.++..++.++++|||+|+++...++..+..... .+...|
T Consensus 43 ~~p~~~~L~----~~lA~l~g~~~~-----v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~----~~~~~G 109 (376)
T PRK06460 43 ANPTVLELT----KKIVELENAEMG-----VAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTD----YLKNWG 109 (376)
T ss_pred CCccHHHHH----HHHHHHhCCCcE-----EEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHH----HHHhhC
Confidence 446677777 999999999763 8888998877778888999999999976554443322211 122223
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+..+ +.+ +.+.+++.+++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+.....+ .
T Consensus 110 ~~v~~~--~~~------~~~~l~~~~~~-~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l-~ 179 (376)
T PRK06460 110 VNVDAS--NPG------SDNIIEKAKSK-RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPL-E 179 (376)
T ss_pred cEEEEE--CCC------CHHHHHHhcCC-CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChh-h
Confidence 333333 222 22345555554 8999999 7888 899999999999999999999999998754221111 1
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|+++.|++|+++|++ +|+++.+++ +.+.+.....+. ..+.+....+.+..+++
T Consensus 180 ~---~~divv~S~sK~l~G~~~~~~G~~~~~~~--------------l~~~l~~~~~~~-g~~~~~~~a~~~l~~~~--- 238 (376)
T PRK06460 180 L---GADIVVHSASKFLAGHNDVIAGLAAGYGK--------------LLNVIDQMRRTL-GTSLDPHAAYLTLRGIK--- 238 (376)
T ss_pred c---CCCEEEeecceeccCCCCceEEEEecCHH--------------HHHHHHHHHHhc-CCCCCHHHHHHHHhchh---
Confidence 1 68999999999998765 588877663 333333222121 11122111111112222
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.++...++..+.++++.+.|++.|.|+.+
T Consensus 239 ---~l~~r~~~~~~n~~~l~~~L~~~p~v~~v 267 (376)
T PRK06460 239 ---TLKIRMDVINRNAEQIAEFLEGHPKVVKV 267 (376)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 34556666777888888888888887653
No 118
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.82 E-value=7.7e-19 Score=159.90 Aligned_cols=236 Identities=11% Similarity=0.094 Sum_probs=147.0
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh-cCCCCeEEEecCCCCCcccccccccccccce
Q 022463 23 GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISA 101 (297)
Q Consensus 23 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 101 (297)
+..+..+++| +++++++|.+. .+++++|++++..++.++ +++||+|+++..+|.+...+. ..
T Consensus 28 g~~~~~~~~e----~~la~~~g~~~-----~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~--------~~ 90 (375)
T PRK11706 28 GDGGFTRRCQ----QWLEQRFGSAK-----VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF--------VL 90 (375)
T ss_pred CCCHHHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHH--------HH
Confidence 3345566666 88899999864 244445556655455555 799999999998888775433 23
Q ss_pred eeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 102 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
.|. ++++++++++++.+|++++++.+++ +|++|++. +.+|...++++|.++|+++|+++|+|++|+.|....+...
T Consensus 91 ~G~--~~v~~d~d~~~~~~d~~~le~~i~~-~tk~i~~~-~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~ 166 (375)
T PRK11706 91 RGA--KIVFVDIRPDTMNIDETLIEAAITP-KTRAIVPV-HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRAL 166 (375)
T ss_pred cCC--EEEEEecCCCcCCcCHHHHHHhcCC-CCeEEEEe-CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeee
Confidence 343 3455567766678999999999987 89998873 2479899999999999999999999999998874322111
Q ss_pred CCCCCccEEEecCC--ccCCCCCceEEEEecC-chh--h-ccC-CccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHH
Q 022463 182 SPFEYADVVTTTTH--KSLRGPRGAMIFFRKG-VKE--I-NKQ-GKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 254 (297)
Q Consensus 182 ~~~~~~D~~~~s~~--K~l~gp~gG~i~~~~~-~~~--~-~~~-g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al 254 (297)
.. ..|+.++|+| |.+..+.||+++++++ +.. + +.. |......+..............+.....+ ....++
T Consensus 167 g~--~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~aa~~~ 243 (375)
T PRK11706 167 GT--IGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSEL-QAAYLW 243 (375)
T ss_pred ec--CcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHH-HHHHHH
Confidence 11 3578888877 9986666677777654 211 1 111 11100000000000000001111111111 112233
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
.++. .++.+.++++++++++.+.|++++
T Consensus 244 ~ql~---~l~~~~~~R~~~~~~~~~~L~~~~ 271 (375)
T PRK11706 244 AQLE---AADRINQRRLALWQRYYDALAPLA 271 (375)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333 467788888889999999888876
No 119
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.82 E-value=1.2e-19 Score=164.08 Aligned_cols=234 Identities=9% Similarity=-0.035 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecC--ChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLS--GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~s--G~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
.++-+.+|+.++++++++.++ .|++++ ||.++.+++.+++.+ +.+++...+|.+.+........ ..+ .+
T Consensus 40 ~~~~~~~r~~l~~l~~~~~~~---~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~----~~~-~~ 110 (361)
T TIGR01366 40 KNLVGRVREGLAELFSLPDGY---EVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAP----WLG-EP 110 (361)
T ss_pred HHHHHHHHHHHHHHhCCCCCc---eEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhh----ccC-Cc
Confidence 455567889999999995432 366643 455666677887643 3333333444333222211100 001 13
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCC-CCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GAS-AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 184 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~-~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~ 184 (297)
..++.+ ....++. .+.+ ++++|.+ |.+ ++|...|+++| +|++|+++++|++|++|..+.++..
T Consensus 111 ~~~~~~---~~~~~~~-----~~~~-~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~--- 175 (361)
T TIGR01366 111 IIVTAD---PGSAPEP-----QADP-GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE--- 175 (361)
T ss_pred eEEecC---CCCCCCC-----ccCC-CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH---
Confidence 334322 2223332 2444 8999988 544 48999999887 5899999999999999999988763
Q ss_pred CCccEEEecCCccCCCCCc-eEEEEecCchhh---ccCCccc-h--hhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 185 EYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---NKQGKEV-F--YDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 185 ~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~---~~~g~~~-~--~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
+|++++|+||++++|+| ++++.++++..+ ...++.. . .++.............+||+...++++.+|++++
T Consensus 176 --~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l 253 (361)
T TIGR01366 176 --TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWM 253 (361)
T ss_pred --CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHH
Confidence 69999999999988878 777888875322 2222211 1 1222222221113447788999999999999999
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
.+..|++.++++++.+++++++.+++.+.++
T Consensus 254 ~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~ 284 (361)
T TIGR01366 254 NGNGGLDWAVARTADSSSRLYSWAQERPYAT 284 (361)
T ss_pred HHccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9884599999999999999999999998644
No 120
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.82 E-value=1.2e-18 Score=159.94 Aligned_cols=232 Identities=19% Similarity=0.210 Sum_probs=148.2
Q ss_pred CCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 18 GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 18 ~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
|...|+++....++| +.+++++|.++ .+.+.+|+.++..++.++++|||+|+ +...+.++..
T Consensus 45 gd~~Y~~~~g~~~Le----eaia~~~g~~~-----vv~t~~Gt~Al~la~~al~~pGD~V~-~~~~f~~~~~-------- 106 (431)
T cd00617 45 GDEAYAGSKSFYDLE----DAVQDLFGFKH-----IIPTHQGRGAENILFSILLKPGRTVP-SNMHFDTTRG-------- 106 (431)
T ss_pred CCCccCCCCCHHHHH----HHHHHHHCCCe-----EEEcCCHHHHHHHHHHHhCCCCCEEc-cCCcccchHH--------
Confidence 344588888889999 78888999875 25556666788778889999999873 4322222211
Q ss_pred ccceeeeeeEeeecccCC-------CCCcCCHHHHHHHhhhc---CCcEEEE-cCCC-C-CCccc---HHHHHHHHHhcC
Q 022463 98 KISAVSIFFETMPYRLNE-------STGYIDYDQLEKSATLF---RPKLIVA-GASA-Y-ARLYD---YERIRKVCNKQK 161 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-------~~~~~d~~~l~~~l~~~---~~~~v~~-~~~~-~-G~~~~---~~~i~~la~~~g 161 (297)
.+...|.....++++.+. ..+.+|+++|++.+++. ++++|++ .++| + |.+.+ +++|.++|++||
T Consensus 107 ~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~g 186 (431)
T cd00617 107 HIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYG 186 (431)
T ss_pred HHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcC
Confidence 233444334334332111 23569999999999862 3778888 5667 4 76665 457899999999
Q ss_pred CEEEEehhhhcccccc------cCCCCC--------CCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHH
Q 022463 162 AIMLADMAHISGLVAA------GVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYE 227 (297)
Q Consensus 162 ~~livD~a~~~g~~~~------~~~~~~--------~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~ 227 (297)
++||.|+||..+...+ +....+ +..+|.+++|++|.+.+|.||+++++++ ++.
T Consensus 187 i~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~-------------~l~ 253 (431)
T cd00617 187 IPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDD-------------ELY 253 (431)
T ss_pred CEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcH-------------HHH
Confidence 9999999988652221 111222 2368999999999999999999999874 244
Q ss_pred HHhhhcc--cCCC--CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 228 EKINQAV--FPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 228 ~~~~~~~--~~~~--~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+++.... .++. .+..+...++++..+|+...+...+++..+ .++++.+.|++.
T Consensus 254 ~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~----~r~~l~~~L~~~ 310 (431)
T cd00617 254 EEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVE----QVRYLGDRLDEA 310 (431)
T ss_pred HHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHH----HHHHHHHHHHHC
Confidence 4444221 1222 355566677777667766432212233333 336666666544
No 121
>PLN02721 threonine aldolase
Probab=99.82 E-value=1.3e-18 Score=157.09 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=118.4
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcC-CCCeEEEecCCCCCcccccccccccccceee
Q 022463 25 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-PHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 25 ~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~-~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.+...++| +.++++++.+. .+++++|+.+++.++.++++ +||+|++++.+|.+.+..... +...|
T Consensus 39 ~~~~~~l~----~~la~~~~~~~-----~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-----~~~~g 104 (353)
T PLN02721 39 DPTALRLE----EEMAKIFGKEA-----ALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGI-----STLGG 104 (353)
T ss_pred CHHHHHHH----HHHHHHhCCce-----eEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhcccch-----hhhcC
Confidence 34467777 88999999875 27778888777767777777 999999998777544331111 12233
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhh------cCCcEEEE-cC-CC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATL------FRPKLIVA-GA-SA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~~v~~-~~-~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
.++.. ++.+ +++.+|++++++.+++ .++++|++ ++ +| +|.+.| +++|.++|+++|+++|+|+++.
T Consensus 105 ~~~~~--v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~ 181 (353)
T PLN02721 105 VHPRT--VKNN-EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI 181 (353)
T ss_pred ceeEe--cCCC-cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 33333 3444 5678999999999983 17888888 53 34 466665 6799999999999999999987
Q ss_pred ccccc-ccCCCCCC-CCccEEEecCCccCCCCCceEEEEecC
Q 022463 172 SGLVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKG 211 (297)
Q Consensus 172 ~g~~~-~~~~~~~~-~~~D~~~~s~~K~l~gp~gG~i~~~~~ 211 (297)
.+... .+.....+ .++|.++.|+||++++|.|++++.+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~ 223 (353)
T PLN02721 182 FNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKS 223 (353)
T ss_pred hcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHH
Confidence 65421 11111111 168999999999998887776666663
No 122
>PLN02822 serine palmitoyltransferase
Probab=99.82 E-value=5.2e-19 Score=165.37 Aligned_cols=243 Identities=15% Similarity=0.129 Sum_probs=159.1
Q ss_pred ccCCCCCCCCcc-CCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcc
Q 022463 10 NKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 88 (297)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~ 88 (297)
++|+.++.+++. |+..+...++| ++++++++.+. .+++++|.+++..++.+++++||.|++....|.+..
T Consensus 137 ~~~G~g~~g~r~~yg~~~~~~~Le----e~La~~~~~~~-----~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~ 207 (481)
T PLN02822 137 EKYGVGSCGPRGFYGTIDVHLDCE----TKIAKFLGTPD-----SILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQ 207 (481)
T ss_pred HHhCCCCcccCccccCHHHHHHHH----HHHHHHhCCCC-----EEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHH
Confidence 345556566555 45557777788 99999999764 389999988788899999999999998877665553
Q ss_pred cccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh--------cCC-cEEEE-c-CCCCCCcccHHHHHHHH
Q 022463 89 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--------FRP-KLIVA-G-ASAYARLYDYERIRKVC 157 (297)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--------~~~-~~v~~-~-~~~~G~~~~~~~i~~la 157 (297)
. ++.+.+..+ +.++.+ |.++++..+.+ .++ ++|++ + .+++|.+.|+++|.++|
T Consensus 208 ~--------~~~ls~~~~--~~~~~n------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~ 271 (481)
T PLN02822 208 N--------GLYLSRSTI--VYFKHN------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLK 271 (481)
T ss_pred H--------HHHHcCCeE--EEECCC------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHH
Confidence 2 233444333 333333 34444444431 134 57777 4 44589999999999999
Q ss_pred HhcCCEEEEehhhhcccccccC------CCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhh
Q 022463 158 NKQKAIMLADMAHISGLVAAGV------IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKIN 231 (297)
Q Consensus 158 ~~~g~~livD~a~~~g~~~~~~------~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~ 231 (297)
++||+++|+|++|+.|...... ...+...+|+++.|++|.+ |+.||+++++++ ..+.+.
T Consensus 272 ~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKal-g~~GG~i~g~~~--------------ii~~~~ 336 (481)
T PLN02822 272 EKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHAL-ATEGGFCTGSAR--------------VVDHQR 336 (481)
T ss_pred HHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhh-hhCCeEEEcCHH--------------HHHHHH
Confidence 9999999999999977654210 0011125799999999998 567799988773 344333
Q ss_pred hcccCCC-CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc--cccCCCC
Q 022463 232 QAVFPGL-QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE--EDKGRPC 295 (297)
Q Consensus 232 ~~~~~~~-~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~g~~~ 295 (297)
....... .++.+....++..++|+.+.. ...+.++.+++.+++.+.|++.+++. ...+.|+
T Consensus 337 ~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~---~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi 400 (481)
T PLN02822 337 LSSSGYVFSASLPPYLASAAITAIDVLED---NPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPI 400 (481)
T ss_pred hcCCceeeccccCHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCE
Confidence 2211111 222233444555567876643 25677888899999999998875533 2345554
No 123
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.82 E-value=3.7e-19 Score=163.10 Aligned_cols=234 Identities=13% Similarity=0.064 Sum_probs=152.5
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-cccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~ 102 (297)
+++..+.+| +.++++.|... .+.++||++|+.+++.+++++||+||++...|.++...... +...|++
T Consensus 59 ~nPtv~~lE----~~la~leg~~~-----av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~-- 127 (432)
T PRK06702 59 GNPTLAAFE----QKLAELEGGVG-----AVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGID-- 127 (432)
T ss_pred CCcHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCE--
Confidence 468899999 99999999976 38889999888878888999999999999887766554322 1222322
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
+ .+++ ..+|++.++++|++ +|++|++ +++| ++.+.|+++|.++|+++|+++++|++.+.+ . .
T Consensus 128 ---v--~~vd-----~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP---~--~ 191 (432)
T PRK06702 128 ---V--TFFN-----PNLTADEIVALAND-KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP---Y--L 191 (432)
T ss_pred ---E--EEEC-----CCCCHHHHHHhCCc-CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCch---h--h
Confidence 2 3222 24789999999998 9999999 6777 678999999999999999999999996432 2 2
Q ss_pred CCCCC-CccEEEecCCccCCCCCc---eEEEEecCch---hh---ccC------C-----ccchhhHHHHhhhcccCCCC
Q 022463 181 PSPFE-YADVVTTTTHKSLRGPRG---AMIFFRKGVK---EI---NKQ------G-----KEVFYDYEEKINQAVFPGLQ 239 (297)
Q Consensus 181 ~~~~~-~~D~~~~s~~K~l~gp~g---G~i~~~~~~~---~~---~~~------g-----~~~~~~~~~~~~~~~~~~~~ 239 (297)
..|++ |+|+++.|.+|+++|..+ |+++.+.... -+ +.. . ..+...+..+..........
T Consensus 192 ~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (432)
T PRK06702 192 CQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYG 271 (432)
T ss_pred CChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHcc
Confidence 22332 899999999999988655 4454333210 00 000 0 00000101000000000111
Q ss_pred CCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 240 GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 240 ~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
...+....+- +++-+. .++.+.+++.+.+.++.+-|++.|.|+.+
T Consensus 272 ~~~sp~~a~l---~~rgL~---Tl~lR~~r~~~Na~~la~~L~~~p~V~~V 316 (432)
T PRK06702 272 NCMSPFNAYI---SNIGLE---TLHLRMERHSENALAVAKWLADHERIEWV 316 (432)
T ss_pred CCCCHHHHHH---HHhccC---cHHHHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 1222222222 222232 45667777788888899999999987765
No 124
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.82 E-value=8.3e-19 Score=159.40 Aligned_cols=219 Identities=14% Similarity=0.087 Sum_probs=144.7
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-cccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~ 102 (297)
+++....+| +.++++.|++.. ++++||+.++. ++..+++|||+|+++...|++.+..+.. +...+
T Consensus 48 ~~p~~~~Le----~~lA~l~g~~~~-----~~~~sG~aai~-~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G---- 113 (377)
T PRK07671 48 GNPTRAALE----ELIAVLEGGHAG-----FAFGSGMAAIT-AVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFG---- 113 (377)
T ss_pred CChHHHHHH----HHHHHHhCCCce-----EEeCCHHHHHH-HHHHHhCCCCEEEECCCccchHHHHHHHHHhcCC----
Confidence 456677788 999999998763 88999987665 4446789999999998877655433221 11122
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
++.+.++ ..|++++++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+......
T Consensus 114 ---~~v~~v~------~~d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~- 182 (377)
T PRK07671 114 ---IEHTFVD------TSNLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPI- 182 (377)
T ss_pred ---eEEEEEC------CCCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCChh-
Confidence 2223222 2388999999987 8999999 7888 799999999999999999999999998654332211
Q ss_pred CCCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 181 PSPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
.. ++|++++|++|+++||. +|+++++++ ++.+++...... ..+..+....+-+ ++.+
T Consensus 183 ~~---g~Divv~S~sK~l~G~~~~~~G~~v~~~~-------------~l~~~~~~~~~~-~g~~~~~~~a~l~---~~~l 242 (377)
T PRK07671 183 SL---GADIVLHSATKYLGGHSDVVAGLVVVNSP-------------ELAEDLHFVQNS-TGGILGPQDSWLL---LRGL 242 (377)
T ss_pred hh---CCeEEEecCcccccCCccceeEEEEeCcH-------------HHHHHHHHHHHh-hcCCCCHHHHHHH---HcCc
Confidence 12 78999999999999885 477777653 233322211111 0122222222222 2222
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
. .+....+++.+.+.++.+.|++.|.|+.+
T Consensus 243 ~---tl~~R~~~~~~na~~la~~L~~~~~v~~v 272 (377)
T PRK07671 243 K---TLGIRMEEHETNSRAIAEFLNNHPAVNKV 272 (377)
T ss_pred C---hHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 2 23445555667777777778888877654
No 125
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.82 E-value=5.9e-19 Score=161.20 Aligned_cols=219 Identities=18% Similarity=0.133 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
...+++++.+++++++++.+. .+++++|+++++.++.+++++||.|+++...|++....+ .+.+..+
T Consensus 75 g~~~l~~~l~~~l~~~~g~~~-----~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~--------~~~g~~~ 141 (385)
T TIGR01825 75 GTLRLHEELEEKLAKFKKTEA-----ALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGL--------RLTKATK 141 (385)
T ss_pred CCcHHHHHHHHHHHHHhCCCc-----EEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHH--------HhcCCce
Confidence 335666667799999999753 389999998887788888999999999887777764322 1222222
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhc---CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccC--
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLF---RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV-- 179 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~---~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~-- 179 (297)
+++ ..+|++++++.+.+. ++++|++ +..| +|.+.|+++|.++|++||+++|+|++|+.+..+...
T Consensus 142 --~~~------~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~ 213 (385)
T TIGR01825 142 --KIY------KHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRG 213 (385)
T ss_pred --EEe------CCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCc
Confidence 211 147888888887652 5677777 4334 799999999999999999999999999776543110
Q ss_pred --CCCCC-CCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCCCchHHHHHHHHHHH
Q 022463 180 --IPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVALK 255 (297)
Q Consensus 180 --~~~~~-~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~al~~al~ 255 (297)
..... .+.|+++.|++|++ ++.||+++.+++ ..+.+.....+.. .+..+....+++.++++
T Consensus 214 ~~~~~~~~~~~~i~~~s~sK~~-~~~gG~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 278 (385)
T TIGR01825 214 TVHHFGLEDKVDIQVGTLSKAI-GVVGGYAAGHKE--------------LIEYLKNRARPFLFSTAQPPAVVAALAAAVD 278 (385)
T ss_pred cHhhcCCCcCCcEEEEeccHHh-hcCCCEEecCHH--------------HHHHHHHhCccccccCCCCHHHHHHHHHHHH
Confidence 00001 16789999999998 446688877663 3444332211222 22344566678788887
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.+.+. .+..++.+++.+++.+.|+++
T Consensus 279 ~~~~~---~~~~~~~~~~~~~l~~~L~~~ 304 (385)
T TIGR01825 279 ELQRS---PELMERLWDNTRFFKAGLGKL 304 (385)
T ss_pred HHhcC---HHHHHHHHHHHHHHHHHHHHc
Confidence 76543 345666667778888877664
No 126
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.82 E-value=2e-18 Score=158.34 Aligned_cols=234 Identities=15% Similarity=0.105 Sum_probs=165.3
Q ss_pred ccccCCCCCCCCccCCCc-hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--------------C
Q 022463 8 MTNKYSEGYPGARYYGGN-EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--------------K 72 (297)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--------------~ 72 (297)
..++|+-+..+++...+. ....++| +++++++|.+. .++++||..+|++++.++. .
T Consensus 128 ai~~yG~g~~gSrl~~G~~~~h~~LE----~~LA~f~g~e~-----all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~ 198 (476)
T PLN02955 128 AAKEYGMGPKGSALICGYTTYHRLLE----SSLADLKKKED-----CLVCPTGFAANMAAMVAIGSVASLLAASGKPLKN 198 (476)
T ss_pred HHHHcCCCCCCcCccccChHHHHHHH----HHHHHHHCCCc-----EEEECChHHHHHHHHHHHhhccccccccccccCC
Confidence 346788888888888765 6777889 99999999987 4999999999998887762 4
Q ss_pred CCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEE-c-CCCCCCcc
Q 022463 73 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA-G-ASAYARLY 148 (297)
Q Consensus 73 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~-~-~~~~G~~~ 148 (297)
++|.|++....|.|..........++ + ...+.++. .|+++|++.++.. +.++|++ + .++.|...
T Consensus 199 ~~d~i~~D~~~HaSI~dG~~ls~~~~----~--a~~~~f~H------ND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia 266 (476)
T PLN02955 199 EKVAIFSDALNHASIIDGVRLAERQG----N--VEVFVYRH------CDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA 266 (476)
T ss_pred CCcEEEEeccchHHHHHHHHhccccC----C--ceEEEeCC------CCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC
Confidence 67788988888888865433211110 1 11222233 4889999988642 3445555 4 66689999
Q ss_pred cHHHHHHHHHhcCCEEEEehhhhcccccccCC---C-C-CCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccch
Q 022463 149 DYERIRKVCNKQKAIMLADMAHISGLVAAGVI---P-S-PFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVF 223 (297)
Q Consensus 149 ~~~~i~~la~~~g~~livD~a~~~g~~~~~~~---~-~-~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~ 223 (297)
|+++|.++|++||+.+|+|++|+.|....... . . -....|+++.|++|.+ |..||++++++
T Consensus 267 pL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~-G~~GGfi~gs~------------- 332 (476)
T PLN02955 267 PMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA-GCHGGFIACSK------------- 332 (476)
T ss_pred CHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch-hccCceeecHH-------------
Confidence 99999999999999999999999887654110 0 0 0026789999999987 66889999988
Q ss_pred hhHHHHhhhcccCCC-CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhh
Q 022463 224 YDYEEKINQAVFPGL-QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSN 280 (297)
Q Consensus 224 ~~~~~~~~~~~~~~~-~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~ 280 (297)
+..+.+.....+.. .+..+....++..++++.+.+. ...+++.+++.++|.+.
T Consensus 333 -~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~---~~~r~~L~~n~~~fr~~ 386 (476)
T PLN02955 333 -KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE---KWRRKAIWERVKEFKAL 386 (476)
T ss_pred -HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHh
Confidence 34455544333333 3344556667777888877654 34667777888888874
No 127
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.81 E-value=6e-19 Score=162.59 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=120.7
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++....+| +.++++.|.+. .++++||+.++..++.+++++||+|+++...|++.+..+... ....|
T Consensus 62 ~~p~~~~Le----~~lA~leg~~~-----al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~----~~~~G 128 (431)
T PRK08248 62 MNPTTDVFE----KRIAALEGGIG-----ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHT----LPKLG 128 (431)
T ss_pred CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHH----HHhCC
Confidence 457788888 89999999765 388889988887788888999999999988777765443221 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
++.++++. .|++++++++++ ++++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+....++ .
T Consensus 129 --v~v~~vd~------~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~ 198 (431)
T PRK08248 129 --ITVKFVDP------SDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-E 198 (431)
T ss_pred --EEEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-H
Confidence 22333332 388999999987 8999999 7777 799999999999999999999999998754433222 2
Q ss_pred CCCCCccEEEecCCccCCCCCc--eEEEE
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG--AMIFF 208 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g--G~i~~ 208 (297)
+ ++|+++.|++|+++|+.. |.+++
T Consensus 199 ~---gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 199 H---GADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred c---CCCEEEEcCccccCCCCCceEEEEE
Confidence 2 899999999999988763 44444
No 128
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.81 E-value=1.3e-18 Score=160.11 Aligned_cols=235 Identities=11% Similarity=0.051 Sum_probs=151.2
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.++....+| +.++++.|.+. .++++||+.++..++.+++++||+|+++...|++.+...... ....|
T Consensus 56 ~~pt~~~Le----~~lA~l~g~~~-----~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~----l~~~g 122 (425)
T PRK06084 56 MNPTNDVLE----QRVAALEGGVG-----ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHT----LPRIG 122 (425)
T ss_pred CCchHHHHH----HHHHHHhCCCc-----eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHh----cccce
Confidence 446677888 99999999765 388889998887788889999999999987776554332211 11112
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+....++ ..|++.+++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+.....+ .
T Consensus 123 --i~v~~~d------~~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~-~ 192 (425)
T PRK06084 123 --IETRFAA------HDDIAALEALIDE-RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPF-E 192 (425)
T ss_pred --eEEEEEC------CCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChh-h
Confidence 2222222 2489999999987 8999999 7778 899999999999999999999999999876543222 2
Q ss_pred CCCCCccEEEecCCccCCCCCc---eEEEEecCch---hh----ccCC-cc---c--h-h-----hHHHHhhhcccCCCC
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG---AMIFFRKGVK---EI----NKQG-KE---V--F-Y-----DYEEKINQAVFPGLQ 239 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~~~~---~~----~~~g-~~---~--~-~-----~~~~~~~~~~~~~~~ 239 (297)
. ++|++++|++|+++|+.. |+++.++... .+ .... .. . + . .+..........+..
T Consensus 193 ~---gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 269 (425)
T PRK06084 193 H---GADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMG 269 (425)
T ss_pred c---CCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcC
Confidence 2 799999999999988653 5555444311 00 0000 00 0 0 0 000000000001111
Q ss_pred CCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 240 GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 240 ~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
...+....+ ..++.+ ..+....+++.+.+.++.+.|++.|.|+.+
T Consensus 270 ~~l~~~~a~---l~lrgl---~tl~~R~~~~~~na~~la~~L~~~p~v~~V 314 (425)
T PRK06084 270 AALSPFNAF---LILQGL---ETLALRMERHTENALKVARYLQQHPQVAWV 314 (425)
T ss_pred CCCCHHHHH---HHHcCc---CcHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 112212221 122222 256777888888999999999999998865
No 129
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.81 E-value=1.2e-18 Score=159.18 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=118.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +.+++++|.+. .+++++|+.++..++.++++|||+|+++...|++....+... ....|
T Consensus 63 ~~pt~~~Le----~~lA~l~g~~~-----~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~----~~~~G 129 (394)
T PRK07050 63 ATPTSLALA----QRLAEIEGGRH-----ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWL----ARDFG 129 (394)
T ss_pred CCHHHHHHH----HHHHHHhCCCe-----EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHH----HHhcC
Confidence 556778888 89999999764 244455567877788888999999999998887765332211 11112
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+..++++.. +.+++++.+++ +|++|++ +++| ++.+.|+++|.++|+++|+++++|++++.+....++.
T Consensus 130 --i~v~~vd~~------~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~- 199 (394)
T PRK07050 130 --ITVRFYDPL------IGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFE- 199 (394)
T ss_pred --eEEEEECCC------CHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHH-
Confidence 222332221 45788888887 8999999 6777 6899999999999999999999999998876532222
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecC
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKG 211 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~ 211 (297)
. ++|++++|++|+++|.. ||+++++++
T Consensus 200 ~---GaDi~v~S~tK~~~g~~~~~gG~v~~~~~ 229 (394)
T PRK07050 200 H---GVDISVQALTKYQSGGSDVLMGATITADA 229 (394)
T ss_pred c---CCeEEEEECCceecCCCCeeEEEEEECCH
Confidence 2 78999999999997744 577777653
No 130
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.81 E-value=9.1e-19 Score=161.48 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCC---cccccccccccccceeeeeeEeeec
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGG---HLSHGYQTDTKKISAVSIFFETMPY 111 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~v~~ 111 (297)
+++.+++++|++.. ++++||++++..++ +.+.+||+|+++..+|.. .+.....+. ..|..+ +.+
T Consensus 127 le~~lA~l~gae~a-----lvv~sg~aAi~l~l-~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~-----~~G~~~--~~v 193 (454)
T TIGR00474 127 VEGLLCELTGAEDA-----LVVNNNAAAVLLAL-NTLAKGKEVIVSRGELVEIGGSFRIPDVME-----QSGAKL--VEV 193 (454)
T ss_pred HHHHHHHHhCCCcE-----EEECCHHHHHHHHH-HHhCCcCEEEECCChhhhhcchhhHHHHHH-----HcCCEE--EEe
Confidence 34999999999863 78889888776555 457999999999877532 222111112 223223 333
Q ss_pred ccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCC---C--CcccHHHHHHHHHhcCCEEEEehhhhcccc-c---ccC--
Q 022463 112 RLNESTGYIDYDQLEKSATLFRPKLIVA-GASAY---A--RLYDYERIRKVCNKQKAIMLADMAHISGLV-A---AGV-- 179 (297)
Q Consensus 112 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~---G--~~~~~~~i~~la~~~g~~livD~a~~~g~~-~---~~~-- 179 (297)
+.+ ...|++++++++++ +|++|++ +.+|+ | ...|+++|.++||+||+++++|.+ .|.+ + .++
T Consensus 194 ~~~---~~~~l~dle~aI~~-~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~--sG~l~~~~~~gl~~ 267 (454)
T TIGR00474 194 GTT---NRTHLKDYEDAITE-NTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLG--SGSLVDLSRYGLPD 267 (454)
T ss_pred CCC---CCCCHHHHHHhcCc-CCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCC
Confidence 332 34589999999987 8999888 77774 4 578999999999999999999975 3332 1 000
Q ss_pred CC---CCC-CCccEEEecCCccCCCCCceEEEEecC
Q 022463 180 IP---SPF-EYADVVTTTTHKSLRGPRGAMIFFRKG 211 (297)
Q Consensus 180 ~~---~~~-~~~D~~~~s~~K~l~gp~gG~i~~~~~ 211 (297)
.+ .+. .++|++++|+||||+||.+|+++++++
T Consensus 268 ~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~ 303 (454)
T TIGR00474 268 EPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKE 303 (454)
T ss_pred CcccccHhHcCCCEEEecCccccCCCeEEEEEECHH
Confidence 11 111 289999999999999998899999884
No 131
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.80 E-value=3.6e-18 Score=155.67 Aligned_cols=242 Identities=16% Similarity=0.133 Sum_probs=162.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+...+..++++.+.+++.+.+|. ++++ +|++|+|++ ++..++.+++.|||+|+++++.+++...
T Consensus 60 ~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~---eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~-------- 128 (393)
T COG0436 60 HYTPSAGIPELREAIAEKYKRRYGLDVDPEE---EIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEA-------- 128 (393)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---eEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHH--------
Confidence 4447788999999999999999885 3432 499999994 7777999999999999999965555433
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
.+.+.|.....++...++.++.+|++.|++++++ +||+|++ +|+| ||.+.+ +++|.++|++||+++|.|+++.-
T Consensus 129 ~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~ 207 (393)
T COG0436 129 AVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEE 207 (393)
T ss_pred HHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhh
Confidence 3445555554554322213789999999999999 9999999 6888 897665 56888999999999999999643
Q ss_pred ccccccCCCCCCC--C-cc--EEEecCCccC--CCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchH
Q 022463 173 GLVAAGVIPSPFE--Y-AD--VVTTTTHKSL--RGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNH 245 (297)
Q Consensus 173 g~~~~~~~~~~~~--~-~D--~~~~s~~K~l--~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~ 245 (297)
-..........+. + .| +.+.|++|.+ +|-+-|+++++++ .+.+.+... .......++.+
T Consensus 208 l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~-------------~l~~~~~~~-~~~~~~~~~~~ 273 (393)
T COG0436 208 LVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE-------------ELIAALRKL-KSYLTSCAPTP 273 (393)
T ss_pred cccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChH-------------HHHHHHHHH-HHhcccCCCHH
Confidence 2221111111111 2 12 5567999975 4444599999842 233333211 11113344556
Q ss_pred HHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 246 TITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 246 ~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
.-.+..+||+.-.+...++..++..++.++.+.+.|.+.+.++
T Consensus 274 ~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~ 316 (393)
T COG0436 274 AQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLS 316 (393)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 6666667676442211345555677788888888998887543
No 132
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.80 E-value=4.4e-18 Score=148.03 Aligned_cols=229 Identities=17% Similarity=0.205 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC-CCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 28 IDMAESLCQKRALEAFRLDP-EKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~-~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
.+++-+.++++.++..+.+. .+ .++++.|. .+...+++++.+|||.|++..+.|+.++ ..++..|++
T Consensus 62 ~~~~~~ai~~w~~~r~~~~i~~e---~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~--------~~i~~n~R~ 130 (388)
T COG1168 62 SDELYAAIAHWFKQRHQWEIKPE---WIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFY--------NAIKLNGRK 130 (388)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcc---eEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHH--------HHHhhcCcE
Confidence 34556666699999988853 33 38998888 4555699999999999999885554443 346667777
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcc---cHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~---~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
+...|+..+.+.+.+|.++||+++.+.+++++++ +|+| +|.+. .+.+|.++|++||+.||.|+.|+--..... .
T Consensus 131 ~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~ 209 (388)
T COG1168 131 VIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-K 209 (388)
T ss_pred EEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-C
Confidence 7777766665567889999999998766788877 8999 88665 577889999999999999999974333321 1
Q ss_pred CCCCC-----Ccc--EEEecCCccC--CCCCceEEEEecC-chhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHH
Q 022463 181 PSPFE-----YAD--VVTTTTHKSL--RGPRGAMIFFRKG-VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGL 250 (297)
Q Consensus 181 ~~~~~-----~~D--~~~~s~~K~l--~gp~gG~i~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al 250 (297)
..|+. .+| +.+.|.+|+| +|...+.++..++ .|. .+.++++. ...+.+|.+++.|.
T Consensus 210 h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~----------~~~~~l~~----~~~~~~n~lg~~A~ 275 (388)
T COG1168 210 HIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRA----------KFLKRLKR----NGLHGPSALGIIAT 275 (388)
T ss_pred ccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHH----------HHHHHHHH----hcCCCCchHHHHHH
Confidence 11211 234 6678889976 4444566666553 221 12222321 22567888999998
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.+|.+.=... ++.+.++.++..+++.+.+.+.
T Consensus 276 ~aAY~~G~~W--Ld~L~~yl~~N~~~~~~~l~~~ 307 (388)
T COG1168 276 EAAYNQGEPW--LDELLEYLKDNRDYVADFLNKH 307 (388)
T ss_pred HHHHHhchHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888765544 6778888888888888877663
No 133
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.80 E-value=3.3e-18 Score=167.10 Aligned_cols=240 Identities=12% Similarity=0.024 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--------CCCCeEEEecCCCCCccccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--------KPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
+..-++..+.++++++++|.+. +.+..++|+.++.+.++++- ...++|+++...|+++...
T Consensus 526 qG~lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPas------- 594 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPAS------- 594 (939)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHH-------
Confidence 3456666677799999999995 35777888876654333331 2346899999999888432
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE-cCCCCCCccc-HHHHHHHHHhcCCEEEEehhhhcc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA-GASAYARLYD-YERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~-~~~~~G~~~~-~~~i~~la~~~g~~livD~a~~~g 173 (297)
+...|.+++.+ +.+ .++.+|+++|++++++ .++++|++ +++++|...| +++|.++||++|.++++|+|+..+
T Consensus 595 -a~~~G~~Vv~V--~~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~a 670 (939)
T TIGR00461 595 -AAMAGMQVVPV--NCD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNA 670 (939)
T ss_pred -HHHCCCEEEEe--ccC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhh
Confidence 22334334444 566 6789999999999984 37888888 6888998766 999999999999999999999776
Q ss_pred cccccC-CCCCCCCccEEEecCCccCC-----CCCc-eEEEEecCchhhccCCcc-chh-hHHHHhhhcccCCCCCCCch
Q 022463 174 LVAAGV-IPSPFEYADVVTTTTHKSLR-----GPRG-AMIFFRKGVKEINKQGKE-VFY-DYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 174 ~~~~~~-~~~~~~~~D~~~~s~~K~l~-----gp~g-G~i~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~t~~~ 244 (297)
...... ... ++|++++|.||+|+ |++| |++.+++.+. +.+.|.. +.. +...+-++........+.+.
T Consensus 671 l~~l~~Pg~~---GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~-~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a 746 (939)
T TIGR00461 671 QVGLTSPGDL---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI-PFLPKHDVVSMITGIGGSKSIGSVSAAPYGSA 746 (939)
T ss_pred CCCCCCcccc---CCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch-hhcCCCcccccccCCCCccccccccccccCcH
Confidence 554432 223 89999999999998 5666 8899987532 1111111 000 00000011010000112234
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
..+...+..+..+... |+.++.+....+++|+.++|++..
T Consensus 747 ~~~l~a~~yi~~lG~~-GL~~~a~~ailnAnYl~~rL~~~~ 786 (939)
T TIGR00461 747 SILPISWMYIKMMGNE-GLPKASVVAILNANYMATRLKDHY 786 (939)
T ss_pred HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHhhccC
Confidence 4555666777777777 899999999999999999997743
No 134
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.80 E-value=2.6e-18 Score=155.82 Aligned_cols=219 Identities=16% Similarity=0.119 Sum_probs=145.3
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +.++++.|++.. +++++|++++..+ .+++++||+|+++...|++........ ....|
T Consensus 50 ~~pt~~~le----~~la~l~g~~~~-----~~~~sG~~ai~~~-~~ll~~Gd~Vl~~~~~y~~t~~~~~~~----~~~~G 115 (366)
T PRK08247 50 GNPTRGVLE----QAIADLEGGDQG-----FACSSGMAAIQLV-MSLFRSGDELIVSSDLYGGTYRLFEEH----WKKWN 115 (366)
T ss_pred CCchHHHHH----HHHHHHhCCCcE-----EEEcCHHHHHHHH-HHHhCCCCEEEEecCCcCcHHHHHHHH----hhccC
Confidence 456778888 999999999763 8888888776644 467899999999988777654332211 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ +.++. .|++.+++++++ +|++|++ +++| ++...++++|.++|+++|+++|+|++++.+.....+ .
T Consensus 116 ~~v--~~vd~------~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-~ 185 (366)
T PRK08247 116 VRF--VYVNT------ASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-E 185 (366)
T ss_pred ceE--EEECC------CCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-h
Confidence 223 32222 388999999987 8999999 7877 788999999999999999999999998655433221 1
Q ss_pred CCCCCccEEEecCCccCCCC---CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGP---RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp---~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
.++|+++.|++|+++|+ .+|+++.+++ .+.+.+....... ....+....+.+..+++
T Consensus 186 ---~g~di~i~S~sK~~~g~~d~~~G~iv~~~~-------------~l~~~~~~~~~~~-g~~~s~~~a~l~~~~l~--- 245 (366)
T PRK08247 186 ---EGADIVIHSATKYLGGHNDVLAGLVVAKGQ-------------ELCERLAYYQNAA-GAVLSPFDSWLLIRGMK--- 245 (366)
T ss_pred ---cCCcEEEeecceeccCCCceeeeEEecChH-------------HHHHHHHHHHHhc-CCCCChHHHHHHHhccC---
Confidence 27899999999999886 3577777642 2333222111100 11112222222222222
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
.+....++.++.++.+.+.|++.|+|..
T Consensus 246 ---tl~~r~~~~~~~a~~l~~~L~~~p~v~~ 273 (366)
T PRK08247 246 ---TLALRMRQHEENAKAIAAFLNEQPGVTD 273 (366)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhCCCeeE
Confidence 3344555667788888888888888765
No 135
>PRK04311 selenocysteine synthase; Provisional
Probab=99.80 E-value=2.3e-18 Score=159.29 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=111.7
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccC
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 114 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 114 (297)
+++.+++++|++. .++++||++++..++. .+.+||+|+++..+|...-..+.... .....|..+ +.++.+
T Consensus 132 ~e~~lA~l~Gae~-----a~vv~sgtaAl~l~l~-~l~~GdeVIvs~~e~~~~ggs~~i~~--~~~~~G~~l--~~v~~~ 201 (464)
T PRK04311 132 LAALLCALTGAED-----ALVVNNNAAAVLLALN-ALAAGKEVIVSRGELVEIGGAFRIPD--VMRQAGARL--VEVGTT 201 (464)
T ss_pred HHHHHHHHhCCCe-----EEEECCHHHHHHHHHH-HhCCCCEEEEcchhhhhcCcchhhHH--HHHHCCcEE--EEECCC
Confidence 3499999999975 3888888877765554 46999999999876653211111000 011223223 333332
Q ss_pred CCCCcCCHHHHHHHhhhcCCcEEEE-cCCCC---C--CcccHHHHHHHHHhcCCEEEEehhhhccccc----cc--CCC-
Q 022463 115 ESTGYIDYDQLEKSATLFRPKLIVA-GASAY---A--RLYDYERIRKVCNKQKAIMLADMAHISGLVA----AG--VIP- 181 (297)
Q Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~---G--~~~~~~~i~~la~~~g~~livD~a~~~g~~~----~~--~~~- 181 (297)
...+++++++++++ +|++|++ |.+|+ | ...|+++|.++||+||+++++|+++ |.+. .+ ..+
T Consensus 202 ---~~t~~~dle~aI~~-~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gs--G~l~~~~~~gl~~~p~ 275 (464)
T PRK04311 202 ---NRTHLRDYEQAINE-NTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGS--GSLVDLSQYGLPDEPT 275 (464)
T ss_pred ---CCCCHHHHHHhcCc-cCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCC--cccccchhccCCCCCc
Confidence 34579999999997 8999888 78773 4 6789999999999999999999853 2210 00 011
Q ss_pred --CCC-CCccEEEecCCccCCCCCceEEEEecC
Q 022463 182 --SPF-EYADVVTTTTHKSLRGPRGAMIFFRKG 211 (297)
Q Consensus 182 --~~~-~~~D~~~~s~~K~l~gp~gG~i~~~~~ 211 (297)
.++ .++|++++|+||||+||.+|+++++++
T Consensus 276 ~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~ 308 (464)
T PRK04311 276 VQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKE 308 (464)
T ss_pred hhhHHhcCCcEEEecCcccccCCceEEEEEcHH
Confidence 111 289999999999999998899999884
No 136
>PLN02242 methionine gamma-lyase
Probab=99.80 E-value=1.8e-18 Score=158.93 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=120.1
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +++++++|.+.. +++++|++++..++.+++++||+|+++...|+++....... ..+..|
T Consensus 74 ~~Pt~~~LE----~~lA~l~g~~~~-----l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~---~~~~~G 141 (418)
T PLN02242 74 FNPTVLNLG----RQMAALEGTEAA-----YCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHF---LPRKCN 141 (418)
T ss_pred CChhHHHHH----HHHHHHhCCCeE-----EEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHh---hhhccC
Confidence 568888999 999999999863 67778888888888899999999999886655443222111 011122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
...+.++. .|++.+++++++.+|++|++ +++| +|.+.|+++|.++|+++|+++|+|++++... .+...
T Consensus 142 --~~~~~~d~------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~~~~ 211 (418)
T PLN02242 142 --ITTTFVDI------TDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LSPAR 211 (418)
T ss_pred --ceEEEcCC------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CCHHH
Confidence 22222222 38999999998634999999 7888 8999999999999999999999999985332 22222
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecC
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKG 211 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~ 211 (297)
. ++|++++|++|+++++. ||+++.+++
T Consensus 212 ~---g~divv~S~SK~l~g~g~~~gG~iv~~~~ 241 (418)
T PLN02242 212 L---GADVVVHSISKFISGGADIIAGAVCGPAE 241 (418)
T ss_pred c---CCcEEEEeCccccCCCCCceEEEEEcCHH
Confidence 2 68999999999997754 588887663
No 137
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.80 E-value=9.9e-19 Score=166.87 Aligned_cols=235 Identities=19% Similarity=0.123 Sum_probs=158.0
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecc
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 112 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 112 (297)
++++.+|++||++.. .++++|| ++|.+++++++++||.||++.+.|-|.+.. ++.+.|+....+.-.
T Consensus 178 eAq~~AA~~fgAd~t-----yFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg-------aLiLsGa~PVYl~P~ 245 (720)
T PRK13578 178 DAQKHAAKVFNADKT-----YFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG-------ALIQAGATPVYLETA 245 (720)
T ss_pred HHHHHHHHHhCCCce-----EEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH-------HHHHcCCeEEEeecc
Confidence 345999999999974 7778888 489989999999999999999888887542 023444444443322
Q ss_pred cCCC--CCcCCH-----HHHHHHhhhc--------C-CcEEEE-cCCCCCCcccHHHHHHH-HHhcCCEEEEehhhhccc
Q 022463 113 LNES--TGYIDY-----DQLEKSATLF--------R-PKLIVA-GASAYARLYDYERIRKV-CNKQKAIMLADMAHISGL 174 (297)
Q Consensus 113 ~~~~--~~~~d~-----~~l~~~l~~~--------~-~~~v~~-~~~~~G~~~~~~~i~~l-a~~~g~~livD~a~~~g~ 174 (297)
.++- .+.+++ +.++++|.++ + .+++++ +++-+|.+.++++|.++ ++.++ ++++|+||.+..
T Consensus 246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhh
Confidence 2211 134454 5599888764 2 377777 56668999999999998 68888 999999997654
Q ss_pred cccc----CCCCCCC-Ccc----EEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 175 VAAG----VIPSPFE-YAD----VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 175 ~~~~----~~~~~~~-~~D----~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
.-.+ +.+..+. ++| +++.|.||.|.+... ++|..+++. .+ |... +--.++++..+.-..+++|++
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~-i~---g~~~-~v~~~r~~~al~m~qSTSPsY 399 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH-IK---GQAR-YCPHKRLNNAFMLHASTSPFY 399 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc-cc---cccc-cCCHHHHHHHHHHHcCCChHH
Confidence 3222 2212122 789 999999999999777 666665531 00 0000 000234444433333778999
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhc-cCCCCc
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQ-NNSENI 287 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l-~~~~~~ 287 (297)
+.++++..|...+... .-+.+.+...+++..+++.+ +..+.+
T Consensus 400 ~LmASLDva~~~m~~~-~G~~l~~~~i~~a~~~R~~l~~~~~~~ 442 (720)
T PRK13578 400 PLFAALDVNAKMHEGE-SGRRLWMECVKLGIEARKLILARCKLI 442 (720)
T ss_pred HHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9999999999998875 33556666677777777766 555543
No 138
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.80 E-value=1.8e-18 Score=157.38 Aligned_cols=220 Identities=18% Similarity=0.112 Sum_probs=143.6
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
+++..+.++ +.++++.|.+. +++++|+ +++..++.+++++||+|+++...|++.+..+..+... .
T Consensus 49 ~~p~~~~le----~~lA~l~g~~~------v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~----~ 114 (382)
T TIGR02080 49 GNPTRDLLQ----QALAELEGGAG------AVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK----G 114 (382)
T ss_pred CCchHHHHH----HHHHHHhCCCc------EEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh----c
Confidence 446667777 89999998543 5555555 6776688889999999999988887655433322111 1
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
+..+..+ + ..|++.+++++++ +|++|++ +++| +|.+.|+++|.++|+++|+++++|++++.+....++
T Consensus 115 ~~~v~~~----d----~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl- 184 (382)
T TIGR02080 115 CFRVLFV----D----QGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL- 184 (382)
T ss_pred CeEEEEE----C----CCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch-
Confidence 1112111 2 2378999999987 8999999 7888 899999999999999999999999998766543222
Q ss_pred CCCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 181 PSPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
.. ++|++++|++|+++|+. +|+++++++ +..+++..... ....+.+....+-+..+++
T Consensus 185 ~~---gaDivv~S~sK~l~G~~~~~~G~i~~~~~-------------~~~~~l~~~~~-~~g~~~sp~~a~l~lr~l~-- 245 (382)
T TIGR02080 185 AL---GADLVLHSCTKYLNGHSDVIAGAVIAKDP-------------QVAEELAWWAN-NLGVTGGAFDSYLTLRGLR-- 245 (382)
T ss_pred hh---CCCEEEeecceeccCCCCceeEEEEeCCH-------------HHHHHHHHHHH-ccCCCCCHHHHHHHHcccc--
Confidence 12 78999999999998865 477776553 23333322111 1111222222222222232
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+....+++.+.+..+.+-|++.|.|+.+
T Consensus 246 ----tl~~R~~~~~~na~~~a~~L~~~p~v~~V 274 (382)
T TIGR02080 246 ----TLVARMRLQQRNAQAIVEYLQTQPLVKKI 274 (382)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHhCCCeeEE
Confidence 33444555667777777778888877753
No 139
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.80 E-value=2.4e-18 Score=149.13 Aligned_cols=247 Identities=15% Similarity=0.171 Sum_probs=159.0
Q ss_pred ccccCCCCC-CCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCC
Q 022463 8 MTNKYSEGY-PGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGG 86 (297)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~ 86 (297)
|++...+.+ .+...|+..++...+| +++++++|... .+++.|||++|..++++.++||+.|++....|..
T Consensus 16 m~eam~~a~~~~~~~YG~D~~~~~~e----~~~ae~~g~~a-----~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~ 86 (342)
T COG2008 16 MREALAAANAVGDDVYGEDPTTNALE----QRIAELFGKEA-----ALFVPSGTQANQLALAAHCQPGESVICHETAHIY 86 (342)
T ss_pred HHHHHHhccccCCCCCCCCHHHHHHH----HHHHHHhCCce-----EEEecCccHHHHHHHHHhcCCCCeEEEeccccce
Confidence 444444444 7788999999999999 99999999832 4777899999999999999999999999877766
Q ss_pred cccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc------CCcEEEEcCC-CCCCcccHH---HHHHH
Q 022463 87 HLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------RPKLIVAGAS-AYARLYDYE---RIRKV 156 (297)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~~v~~~~~-~~G~~~~~~---~i~~l 156 (297)
..... ++.+.+... .+++ .+..++.+++|+++..+... ++.+++.+.+ ..|++.|++ +|.++
T Consensus 87 ~~E~G------a~~~~~~~~-~~~~-~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~ 158 (342)
T COG2008 87 TDECG------APEFFGGGQ-KLPI-VPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAV 158 (342)
T ss_pred ecccC------cHHHHcCCc-eecc-CCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHH
Confidence 54433 222222111 1211 22257899999999988742 2345555533 478887765 77788
Q ss_pred HHhcCCEEEEehhhhcccccc-cCCCCCC-CCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcc
Q 022463 157 CNKQKAIMLADMAHISGLVAA-GVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV 234 (297)
Q Consensus 157 a~~~g~~livD~a~~~g~~~~-~~~~~~~-~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 234 (297)
||++|++|++|+|........ +.....+ .++|+++++++|.++.|.|++++++.+. .++.....
T Consensus 159 ~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~--------------~~~a~~~r 224 (342)
T COG2008 159 CKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDF--------------AKRARRWR 224 (342)
T ss_pred HHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHH--------------HHHHHHHH
Confidence 999999999999975433322 2111111 1899999999999999999999999853 22221110
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 235 FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 235 ~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
.- ..+...-..+.+ ++...+.+..-+.....|...++.+|.+.+.+.++++
T Consensus 225 K~-~Ggl~~k~r~la--A~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~ 275 (342)
T COG2008 225 KR-AGGLMRKARFLA--AQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVK 275 (342)
T ss_pred HH-hcccHhhhhHHH--HHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCce
Confidence 00 011111122222 2222333341344455555567889999988776644
No 140
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.80 E-value=1.4e-18 Score=157.54 Aligned_cols=218 Identities=14% Similarity=0.088 Sum_probs=143.7
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+++| +.++++.|.+. .+.++||++++.+++.+++++||+|+++...|+..+...... +...|
T Consensus 62 ~~P~~~~lE----~~la~leg~~~-----av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~----~~~~G 128 (384)
T PRK06434 62 GNPTVQAFE----EKYAVLENAEH-----ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKV----LKTLG 128 (384)
T ss_pred CChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHH----HHhcC
Confidence 668899999 88999999876 399999998877788889999999999876555554332111 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+.+++++.++. ..++ ++..++++|++ +++| ++.+.|+++|.++|++++ +++|++++.+.....+.
T Consensus 129 --i~v~fvd~~~~-~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~- 195 (384)
T PRK06434 129 --IHVDYIDTDRL-NSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPLD- 195 (384)
T ss_pred --cEEEEECCCCh-hhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCchh-
Confidence 23344444421 1111 23336899999 7777 679999999999999998 57799976544322221
Q ss_pred CCCCCccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
. ++|++++|.+|+++|+. ||+++++++ ++.+++..... ......+ .+.+++- +.
T Consensus 196 ~---gaDivv~S~tK~i~G~~d~~gG~vv~~~~-------------~~~~~~~~~~~-~~G~~~~-----~~~A~l~-~~ 252 (384)
T PRK06434 196 L---GADVVIHSATKYISGHSDVVMGVAGTNNK-------------SIFNNLVERRK-TLGSNPD-----PIQAYLA-LR 252 (384)
T ss_pred c---CCCEEEeecccccCCCCCceEEEEecCcH-------------HHHHHHHHHHH-hcCCCCC-----HHHHHHH-Hh
Confidence 2 89999999999999866 577777653 23333221110 0111111 1222222 22
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
+...++.+.+++.+.+..+.+.|++.|.|+.+
T Consensus 253 gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V 284 (384)
T PRK06434 253 GLKTLGLRMEKHNKNGMELARFLRDSKKISNV 284 (384)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 22266778888899999999999999998864
No 141
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.79 E-value=8.4e-18 Score=139.59 Aligned_cols=251 Identities=17% Similarity=0.213 Sum_probs=168.9
Q ss_pred cCCCCCCCCccCCC-------chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecC
Q 022463 11 KYSEGYPGARYYGG-------NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDL 82 (297)
Q Consensus 11 ~~~~~~~~~~~~~~-------~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~ 82 (297)
.|++||+-+.++.. .+-+..+- +.+++++|+|. +.+|.|+ .+-++++.++.++||.|++..+
T Consensus 39 E~gDGYSvCD~C~~Grldei~kPpI~~F~----~dlaeFlg~D~------~R~t~GARe~KfavMhal~~~gd~vV~D~~ 108 (382)
T COG1103 39 EWGDGYSVCDFCLEGRLDEITKPPIKDFL----EDLAEFLGMDE------VRVTAGAREAKFAVMHALCKEGDWVVVDSL 108 (382)
T ss_pred HhcCCcchhhhhccCccccccCCcHHHHH----HHHHHHhCCce------eeecccchhhHHHHHHHhccCCCEEEEcCc
Confidence 46788888888842 23344444 56999999986 8889999 6888888999999999999998
Q ss_pred CCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc-----C-CcEEEE-c-CCCCCCcccHHHHH
Q 022463 83 PHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----R-PKLIVA-G-ASAYARLYDYERIR 154 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~-~~~v~~-~-~~~~G~~~~~~~i~ 154 (297)
.|.+.+-+. +..|..+..+| ...-.++.+++|.....|.+- + |.+.++ + ..+||...|-+.++
T Consensus 109 aHYttyvAA--------Eragl~v~eVp-~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva 179 (382)
T COG1103 109 AHYTTYVAA--------ERAGLNVAEVP-NTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVA 179 (382)
T ss_pred chHHHHHHH--------HhcCCeEEecC-CCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHH
Confidence 887775432 33444454554 222235788888877777531 2 455555 5 55699999999999
Q ss_pred HHHHhcCCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhc
Q 022463 155 KVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQA 233 (297)
Q Consensus 155 ~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (297)
++|+++|++++..+|++.|-+|...... ++||++.|+||++.+..- |++..+.++......+... .+.. ...
T Consensus 180 ~ic~e~gvPlllN~AYt~Grmpvs~ke~---g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~--~~~~--KEv 252 (382)
T COG1103 180 KICREYGVPLLLNCAYTVGRMPVSGKEI---GADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGR--AFPK--KEV 252 (382)
T ss_pred HHHHHcCCceEeecceeecccccccccc---CCCEEEecCccchhccCCeeEEeehhHHHHHHHhhccc--cccc--cee
Confidence 9999999999999999999999988877 999999999999877555 8888888543221110000 0000 000
Q ss_pred ccCCC--CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 234 VFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 234 ~~~~~--~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
.+.+- .|.|-...+++ +-...+. -+.++...+-+++|.+++.++..++-..-+|
T Consensus 253 ellGCT~rGapivTlmAS----fP~V~eR---VkrWdeEv~kaR~fv~elEkigg~~qlG~rP 308 (382)
T COG1103 253 ELLGCTVRGAPIVTLMAS----FPHVVER---VKRWDEEVEKARWFVAELEKIGGVKQLGERP 308 (382)
T ss_pred eeecccccCchHHHHHhc----CHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCC
Confidence 01111 22233333333 3333322 3345556677889999998888766555555
No 142
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.78 E-value=1.7e-17 Score=148.96 Aligned_cols=239 Identities=14% Similarity=0.097 Sum_probs=159.8
Q ss_pred CCccCCCchhHHHHHHHHHHHHHHHcCCC--CCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccc
Q 022463 18 GARYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 18 ~~~~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
....|...+...++++...+.+...++.. ++ .+++++|+ +++..++.++.++||+|+++...|.++.....
T Consensus 28 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~----~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~-- 101 (350)
T cd00609 28 GLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE----EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAAR-- 101 (350)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcc----eEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH--
Confidence 34455666777888866666666665521 32 37776666 57766888888999999999988887755333
Q ss_pred cccccceeeeeeEeeecccCCCCCcCCH--HHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHH---HHHHhcCCEEEEe
Q 022463 95 DTKKISAVSIFFETMPYRLNESTGYIDY--DQLEKSATLFRPKLIVA-GASA-YARLYDYERIR---KVCNKQKAIMLAD 167 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~~~~~~d~--~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~---~la~~~g~~livD 167 (297)
..+..+..+ +.+ +++..+. +.++....+ ++++|++ +++| +|...|++++. ++|+++|+++|+|
T Consensus 102 ------~~~~~~~~i--~~~-~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 102 ------LAGAEVVPV--PLD-EEGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISD 171 (350)
T ss_pred ------HCCCEEEEE--ecc-cccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEe
Confidence 223224344 444 3344444 566666655 8899998 6555 78888766554 8999999999999
Q ss_pred hhhhcccccccCC----CCCCCCccEEEecCCccCC-CC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 168 MAHISGLVAAGVI----PSPFEYADVVTTTTHKSLR-GP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 168 ~a~~~g~~~~~~~----~~~~~~~D~~~~s~~K~l~-gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
++|+.+....... .....+.|+++.|++|+++ ++ +.|+++++++ ++.+.+..... ...++
T Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-------------~~~~~~~~~~~-~~~~~ 237 (350)
T cd00609 172 EAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-------------ELLERLKKLLP-YTTSG 237 (350)
T ss_pred cchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHH-------------HHHHHHHHHHH-hcccC
Confidence 9997655432211 1111167899999999986 33 3399988873 23333332211 11345
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
++.....++..+++... . ++++++++.+.+++++.+.|++.+...
T Consensus 238 ~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~~~~~ 282 (350)
T cd00609 238 PSTLSQAAAAAALDDGE-E-HLEELRERYRRRRDALLEALKELGPLV 282 (350)
T ss_pred CChHHHHHHHHHHhCcH-H-HHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 66777777777777654 3 788899999999999999999887643
No 143
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.78 E-value=1.3e-17 Score=152.12 Aligned_cols=217 Identities=18% Similarity=0.117 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEee
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 109 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 109 (297)
.+.+..+++++++++.+ + .+++++|+.+++.++..++++||+|+++...|++..... .+.|..+..+
T Consensus 84 ~~~~~l~~~la~~~~~~-~----~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~--------~~~g~~~~~~ 150 (385)
T PRK05958 84 PAHEALEEELAEWFGAE-R----ALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGA--------RLSRARVRRY 150 (385)
T ss_pred HHHHHHHHHHHHHhCCC-c----EEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHH--------HhcCCceEEe
Confidence 33444558899999853 2 488888887777677788999999999988887765432 2223223323
Q ss_pred ecccCCCCCcCCHHHHHHHhhhc--CCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC-----
Q 022463 110 PYRLNESTGYIDYDQLEKSATLF--RPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI----- 180 (297)
Q Consensus 110 ~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~----- 180 (297)
+ ..|++.+++.+++. ++.++++ +..+ +|...|+++|.++|++||+++|+|++|+.|..+....
T Consensus 151 --~------~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~ 222 (385)
T PRK05958 151 --P------HNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAE 222 (385)
T ss_pred --C------CCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHh
Confidence 2 23789999998763 2445555 3434 7889999999999999999999999998765431100
Q ss_pred -CCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCCCchHHHHHHHHHHHHHh
Q 022463 181 -PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 181 -~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~al~~al~~~~ 258 (297)
.......++++.|++|++ ++.||+++.+++ +.+.+.....+.. .++++...++++.++++.+.
T Consensus 223 ~~~~~~~~~i~~~s~sK~~-~~~Gg~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~ 287 (385)
T PRK05958 223 AGLAGEPDVILVGTLGKAL-GSSGAAVLGSET--------------LIDYLINRARPFIFTTALPPAQAAAARAALRILR 287 (385)
T ss_pred hCCCCCCceEEEEechhhc-ccCCcEEEcCHH--------------HHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh
Confidence 000012347789999998 556788877763 3333322211211 23345566677778888775
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
.. +.++++..++.+++.+.|+++.
T Consensus 288 ~~---~~~~~~~~~~~~~l~~~L~~~~ 311 (385)
T PRK05958 288 RE---PERRERLAALIARLRAGLRALG 311 (385)
T ss_pred cC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 32 5677888888888888887653
No 144
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.78 E-value=2.1e-18 Score=144.82 Aligned_cols=185 Identities=21% Similarity=0.249 Sum_probs=138.2
Q ss_pred cccccCCCCCCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc-CCCCeEEEecCCCC
Q 022463 7 VMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL-KPHDRIMALDLPHG 85 (297)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~-~~gd~Vl~~~~~~~ 85 (297)
.|+..+.+..-|+..|+..+....|| ++.|+++|-+. .++++|||..|+.+++..+ +||.+|++.+..|-
T Consensus 37 eMr~am~eA~vgDdVyGeD~tt~rLE----~~vA~l~GKEA-----gLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI 107 (384)
T KOG1368|consen 37 EMRRAMAEASVGDDVYGEDPTTNRLE----QRVAELFGKEA-----GLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHI 107 (384)
T ss_pred HHHHHHhhcccCcccccCCccHHHHH----HHHHHHhCccc-----eeeecccccccHHHHHHHhcCCCceEEeccchhe
Confidence 46666677788999999999999999 88899999876 4999999999998888775 59999999876554
Q ss_pred CcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcC-------CcEEEE-cCCC-CC-CcccHH---H
Q 022463 86 GHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR-------PKLIVA-GASA-YA-RLYDYE---R 152 (297)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~-------~~~v~~-~~~~-~G-~~~~~~---~ 152 (297)
-.+...- ...+.|..+ .++..+ .++.+|+++++..+..++ |++|.+ +.+| .| .+.|++ +
T Consensus 108 ~~~E~gg-----~s~l~gv~~--~tv~~e-~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~ 179 (384)
T KOG1368|consen 108 HRYEQGG-----ISQLAGVHV--RTVKNE-NDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDR 179 (384)
T ss_pred eehhccC-----hhhhcccee--EeeeeC-CCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHH
Confidence 3332221 123334333 443444 678999999999998433 688888 5444 55 888876 6
Q ss_pred HHHHHHhcCCEEEEehhhhccc-----ccccCCCCCCCCccEEEecCCccCCCCCceEEEEecC
Q 022463 153 IRKVCNKQKAIMLADMAHISGL-----VAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 211 (297)
Q Consensus 153 i~~la~~~g~~livD~a~~~g~-----~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~ 211 (297)
|.++|++||+.+++|+|..... ++...... .+|.+..+++|.|++|-|++|+.+++
T Consensus 180 v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~---~fDSVsiCLSKglgAPVGSViVG~k~ 240 (384)
T KOG1368|consen 180 VKALAKRHGLKLHMDGARIFNAAVASGVPVKKICS---AFDSVSICLSKGLGAPVGSVIVGSKD 240 (384)
T ss_pred HHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHH---hhhhhhhhhhccCCCCcccEEEccHH
Confidence 7788999999999999864322 11111122 57999999999999999999999995
No 145
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.78 E-value=1.2e-17 Score=153.43 Aligned_cols=232 Identities=18% Similarity=0.147 Sum_probs=152.8
Q ss_pred ccCCCCCCCCccC-CCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcC--CCCeEEEecCCCCC
Q 022463 10 NKYSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK--PHDRIMALDLPHGG 86 (297)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~--~gd~Vl~~~~~~~~ 86 (297)
++|+-+..+++.. +..+...++| +++++++|.+. .++++||+.+|..++..+.. +++.|+++...|.+
T Consensus 73 ~~~~~~~~~s~~~~g~~~~~~~Le----~~la~~~g~~~-----~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s 143 (402)
T TIGR01821 73 DKYGAGAGGTRNISGTNIPHVELE----AELADLHGKES-----ALVFTSGYVANDATLATLAKIIPGCVIFSDELNHAS 143 (402)
T ss_pred HHcCCCCcchhhhhCCcHHHHHHH----HHHHHHhCCCe-----EEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHH
Confidence 4454444455543 3345566777 99999999653 48999999998878877754 78888877667766
Q ss_pred cccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-cCCC-CCCcccHHHHHHHHHhcC
Q 022463 87 HLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA-GASA-YARLYDYERIRKVCNKQK 161 (297)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g 161 (297)
....+. ..+..+.. ++ ..|++++++.++. .++++|++ ++.| +|.+.|+++|.++|++||
T Consensus 144 ~~~~~~--------~~g~~~~~--~~------~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~ 207 (402)
T TIGR01821 144 MIEGIR--------HSGAEKFI--FR------HNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYG 207 (402)
T ss_pred HHHHHH--------HcCCeEEE--EC------CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcC
Confidence 654332 22221211 11 2367788887763 25778888 6555 799999999999999999
Q ss_pred CEEEEehhhhcccccc---cCCC-CCC-CCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccC
Q 022463 162 AIMLADMAHISGLVAA---GVIP-SPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP 236 (297)
Q Consensus 162 ~~livD~a~~~g~~~~---~~~~-~~~-~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (297)
+++|+|++|+.|.... +... ..+ ..+|+++.+++|.+++ .||+++.+++ +.+.+.....+
T Consensus 208 ~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~i~~~~~--------------~~~~l~~~~~~ 272 (402)
T TIGR01821 208 ALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-VGGYIAASRK--------------LIDAIRSYAPG 272 (402)
T ss_pred CEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-CCceeecCHH--------------HHHHHHHhCcC
Confidence 9999999999775421 1111 111 1468898899999854 5688877763 34433322112
Q ss_pred CC-CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 237 GL-QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 237 ~~-~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.. .++.+...++++.++|+.+.+. +.++++.+++.+++.+.|+++
T Consensus 273 ~~~t~~~~~~~~aaa~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~~ 318 (402)
T TIGR01821 273 FIFTTSLPPAIAAGATASIRHLKES---QDLRRAHQENVKRLKNLLEAL 318 (402)
T ss_pred ceecCcCCHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHHHc
Confidence 11 3345556677777888877644 555666677888888888765
No 146
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.78 E-value=5.7e-18 Score=153.74 Aligned_cols=219 Identities=11% Similarity=0.005 Sum_probs=144.2
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccc-ccccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGY-QTDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~~~~~~ 102 (297)
+++..+.+| +.++.+-+.+. .++++||+.++..++.++++|||+|+++...|++...... .....+++
T Consensus 62 gnPt~~~Le----~~la~le~~~~-----~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~-- 130 (395)
T PRK05967 62 GTPTTDALC----KAIDALEGSAG-----TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVE-- 130 (395)
T ss_pred CChHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeE--
Confidence 557777788 88888877654 3899999888777888999999999999877776643221 11222322
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
+..+ +.+ +.+.+++++++ +|++|++ +++| ++.+.|+++|+++|+++|+++++|++++.+... ...
T Consensus 131 ---v~~v--d~~------~~e~l~~al~~-~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~-~pl 197 (395)
T PRK05967 131 ---VEYY--DPE------IGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYF-RPL 197 (395)
T ss_pred ---EEEe--CCC------CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceec-Chh
Confidence 3222 211 35779999987 8999999 6777 789999999999999999999999998654322 222
Q ss_pred CCCCCCccEEEecCCccCCCCCc---eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 181 PSPFEYADVVTTTTHKSLRGPRG---AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
.+ |+|+++.|.+|+++|-.+ |+++.+++ ..+++..... ......+....+-+..+++
T Consensus 198 ~~---GaDivv~S~tKy~~Gh~d~~~G~v~~~~~--------------~~~~l~~~~~-~~G~~~~p~da~l~~rgl~-- 257 (395)
T PRK05967 198 DF---GVDISIHAATKYPSGHSDILLGTVSANEK--------------CWPQLLEAHG-TLGLCAGPDDTYQILRGLR-- 257 (395)
T ss_pred Hc---CCCEEEEecccccCCCCCeeEEEEEcCHH--------------HHHHHHHHHH-HcCCCCCHHHHHHHHcCcc--
Confidence 23 899999999999877443 65554442 2222221111 1112233333333323332
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+..+.+++.+.+..+.+-|++.|.|+.+
T Consensus 258 ----Tl~lR~~~~~~na~~lA~~L~~hp~v~~V 286 (395)
T PRK05967 258 ----TMGIRLEHHRKSALEIARWLEGRPDVARV 286 (395)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 34555566666777777778888887754
No 147
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.78 E-value=8.5e-18 Score=154.91 Aligned_cols=231 Identities=18% Similarity=0.157 Sum_probs=149.7
Q ss_pred cCCCCCCCCccCC-CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--CCCCeEEEecCCCCCc
Q 022463 11 KYSEGYPGARYYG-GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--KPHDRIMALDLPHGGH 87 (297)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--~~gd~Vl~~~~~~~~~ 87 (297)
+|+-+..+++.+. ..+...++| +++++++|.+. .++++||+++|..++..+. .+||.|+++...|.+.
T Consensus 75 ~~~~~~~~s~~~~~~~~~~~~Le----~~la~~~g~~~-----~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~ 145 (410)
T PRK13392 75 RYGAGAGGTRNISGTSHPHVLLE----RELADLHGKES-----ALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASM 145 (410)
T ss_pred HcCCCCchhhhcccChHHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHH
Confidence 3443444444433 333456777 89999999753 4999999988887777664 4899998887777776
Q ss_pred ccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCC
Q 022463 88 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA-GASA-YARLYDYERIRKVCNKQKA 162 (297)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~ 162 (297)
.... ...|..+..+ +.+ |.+.+++.+.. .++++|++ +++| +|.+.|+++|.++|+++|+
T Consensus 146 ~~~~--------~~~g~~~~~~--~~~------d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~ 209 (410)
T PRK13392 146 IEGI--------RRSGAEKQVF--RHN------DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNA 209 (410)
T ss_pred HHHH--------HHcCCeEEEE--eCC------CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCC
Confidence 4322 2233323222 211 45556665542 36888888 6666 7999999999999999999
Q ss_pred EEEEehhhhccccccc---CC--CCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCC
Q 022463 163 IMLADMAHISGLVAAG---VI--PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG 237 (297)
Q Consensus 163 ~livD~a~~~g~~~~~---~~--~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 237 (297)
++++|++|+.|..... .. ....+.+|+++.|++|+++. .||+++.+++ +.+.+.....+.
T Consensus 210 ~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~-~GG~~~~~~~--------------~~~~l~~~~~~~ 274 (410)
T PRK13392 210 LTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGC-LGGYIAASAD--------------LIDFVRSFAPGF 274 (410)
T ss_pred EEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhc-ccchhhcCHH--------------HHHHHHHhCcch
Confidence 9999999997764211 10 01112578999999999865 4578877663 344333322221
Q ss_pred C-CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 238 L-QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 238 ~-~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
. .++.+....+++.++|+.+... ...+++.++..+++.+.|++.
T Consensus 275 ~~s~~~~~~~~~a~~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~~ 319 (410)
T PRK13392 275 IFTTALPPAVAAGATAAIRHLKTS---QTERDAHQDRVAALKAKLNAN 319 (410)
T ss_pred hccCcCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHc
Confidence 1 2334446677778889876544 334566677778888888764
No 148
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.78 E-value=1e-17 Score=134.75 Aligned_cols=164 Identities=24% Similarity=0.257 Sum_probs=112.4
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeeccc
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 113 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 113 (297)
+++++++++++.+.++ .+++++|+.++..+++++.+++++|+++...|+++.. .. ....|..+..+ +.
T Consensus 4 ~~~~~l~~~~~~~~~~---~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~-----~~~~g~~~~~v--~~ 71 (170)
T cd01494 4 ELEEKLARLLQPGNDK---AVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW--VA-----AELAGAKPVPV--PV 71 (170)
T ss_pred HHHHHHHHHcCCCCCc---EEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh--hH-----HHhcCCEEEEe--cc
Confidence 3449999999654443 2444455578877888888889999999988888853 11 12223334344 33
Q ss_pred CCCC-CcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCccEE
Q 022463 114 NEST-GYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVV 190 (297)
Q Consensus 114 ~~~~-~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~ 190 (297)
+... ...|.+.+++.....+++++++ ++++ .|...|+++|.++|+++|+++|+|+++..+.........+..++|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~ 151 (170)
T cd01494 72 DDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVV 151 (170)
T ss_pred CCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEE
Confidence 3221 2223235555444347888888 4444 67888999999999999999999999988877652211222379999
Q ss_pred EecCCccCCCCCceEEEEe
Q 022463 191 TTTTHKSLRGPRGAMIFFR 209 (297)
Q Consensus 191 ~~s~~K~l~gp~gG~i~~~ 209 (297)
+.|+||+|++|++|++++|
T Consensus 152 ~~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 152 TFSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred EEEcccccCCCceEEEEeC
Confidence 9999999988666999875
No 149
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.78 E-value=2.4e-17 Score=150.45 Aligned_cols=238 Identities=13% Similarity=0.093 Sum_probs=153.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+| +++++ +++++|+ .++..++.+++++||.|+++..+|......
T Consensus 56 ~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~----i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~------- 124 (382)
T PRK06108 56 FYTHNLGIPELREALARYVSRLHGVATPPER----IAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAA------- 124 (382)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCcCcce----EEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHH-------
Confidence 366666778888888888888888 56654 8888887 466667788899999999998777655332
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
+...|..+..++.+.++.++.+|++++++.+++ +++++++ +++| +|.+.+ +++|.++|+++|+++|+|++++.
T Consensus 125 -~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~ 202 (382)
T PRK06108 125 -PKILGARVVCVPLDFGGGGWTLDLDRLLAAITP-RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYER 202 (382)
T ss_pred -HHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhh
Confidence 222333344444332223467999999999876 8898888 7877 887665 57888999999999999999765
Q ss_pred cccc-ccCCCC--CC---CCccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 173 GLVA-AGVIPS--PF---EYADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 173 g~~~-~~~~~~--~~---~~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
.... ....+. .+ ..-.+++.|++|.++.| +-|+++.+++ +.+.+.... ......++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~--------------~~~~~~~~~-~~~~~~~~~ 267 (382)
T PRK06108 203 LYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPA--------------LGQVLEKLI-EYNTSCVAQ 267 (382)
T ss_pred hccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHH--------------HHHHHHHHH-HhcccCCCh
Confidence 4332 111110 00 02347789999977432 2399998773 333333221 111122333
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+...++..+|+.. .. .+++++++.++..+++.+.|++++.++
T Consensus 268 ~~q~a~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~ 309 (382)
T PRK06108 268 FVQRAAVAALDEG-ED-FVAELVARLRRSRDHLVDALRALPGVE 309 (382)
T ss_pred HHHHHHHHHHhCC-hH-HHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 4444444444321 11 346677788888888988888776543
No 150
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.78 E-value=1.9e-17 Score=152.42 Aligned_cols=230 Identities=17% Similarity=0.154 Sum_probs=149.9
Q ss_pred CCCCCCCCccC-CCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcC--CCCeEEEecCCCCCcc
Q 022463 12 YSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK--PHDRIMALDLPHGGHL 88 (297)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~--~gd~Vl~~~~~~~~~~ 88 (297)
|+-+..+++.+ +..+...++| +++++++|.+. .++++||+++|..++..+.. +++.|+.....|.+..
T Consensus 76 ~~~~~~~s~~~~g~~~~~~~l~----~~la~~~g~~~-----~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~ 146 (407)
T PRK09064 76 CGAGAGGTRNISGTNHYHVELE----RELADLHGKEA-----ALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMI 146 (407)
T ss_pred cCCCCCCcCcCccCHHHHHHHH----HHHHHHhCCCc-----EEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHH
Confidence 33333344443 2345666777 89999999643 48889999998877777654 7887777766676654
Q ss_pred cccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCE
Q 022463 89 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA-GASA-YARLYDYERIRKVCNKQKAI 163 (297)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~ 163 (297)
..+. ..+..+ ..++. .|++++++.++. .++++|++ ++.+ .|...|+++|.++|+++|++
T Consensus 147 ~~~~--------~~~~~~--~~~~~------~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~ 210 (407)
T PRK09064 147 EGIR--------RSRCEK--HIFRH------NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNAL 210 (407)
T ss_pred HHHH--------HcCCcE--EEECC------CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCE
Confidence 3222 222212 11121 377888888762 26788888 5555 78999999999999999999
Q ss_pred EEEehhhhccccc-cc--CCC-CC-CCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC
Q 022463 164 MLADMAHISGLVA-AG--VIP-SP-FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL 238 (297)
Q Consensus 164 livD~a~~~g~~~-~~--~~~-~~-~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 238 (297)
+|+|++|+.|... .+ ... .. .+..|+++.|++|.+ |+.||+++.+++ +.+.+.....+..
T Consensus 211 livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~~~~~~~--------------~~~~l~~~~~~~~ 275 (407)
T PRK09064 211 TYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF-GVMGGYIAGSAA--------------LVDAVRSYAPGFI 275 (407)
T ss_pred EEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhh-hccCceEecCHH--------------HHHHHHHhCcccc
Confidence 9999999876532 11 100 00 124689999999988 556788887763 3333332211211
Q ss_pred -CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 239 -QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 239 -~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
..+.+....+++.++++.+.+. ...+++.+++.+++.+.|++.
T Consensus 276 ~t~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~l~~~L~~~ 319 (407)
T PRK09064 276 FTTSLPPAIAAAALASIRHLKES---NEERERHQERAAKLKAALDAA 319 (407)
T ss_pred ccCcCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHc
Confidence 2234445667777888887654 345677778888888888765
No 151
>PLN02452 phosphoserine transaminase
Probab=99.78 E-value=4.2e-18 Score=153.40 Aligned_cols=235 Identities=13% Similarity=0.073 Sum_probs=154.1
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEe--cCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQS--LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~--~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+...++-+.+++.|.++++.+.+ | .+++ ++||.++.+++.+++++||++++... +.++-...-. ++..|
T Consensus 48 ~~f~~i~~~~~~~L~~l~~~p~~-y--~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~---G~fg~r~~~~---a~~~g 118 (365)
T PLN02452 48 KEFLSIIQKAEADLRELLDIPDN-Y--EVLFLQGGASTQFAAIPLNLCKPGDKADFVVT---GSWSKKAAKE---AKKYC 118 (365)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC-c--eEEEEeCccHHHHHHHHHhcCCCCCeEEEEEC---CHHHHHHHHH---HHHhC
Confidence 34456667788999999998533 2 2444 45556777788999999999988763 2222111111 11111
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE--cCCCCCCc-ccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA--GASAYARL-YDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~--~~~~~G~~-~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
........+....+..+++++++. .+ +.+.|.+ +.+.+|.. .|++++.+ +++++|+++++|..++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~ 189 (365)
T PLN02452 119 KTNVIASGKDEKYTKIPSVSEWEL--TP-DAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVS 189 (365)
T ss_pred CCcEEEecCCCCCCCCCChHHcCC--CC-CCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHH
Confidence 111111111111122466666422 22 5677777 46668974 78777653 8999999999999999988
Q ss_pred CCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 181 PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 181 ~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
.+ ++|+ +|+||.+ ||.| |++++++++..+.........++....+. ....+||++..++++..+|+++.+
T Consensus 190 ~~---~v~~--~saqK~l-GP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~---~s~~~TP~v~~i~~l~~aL~~l~~ 260 (365)
T PLN02452 190 KY---GVIY--AGAQKNV-GPSGVTIVIIRKDLIGNARPITPGMLDYKIHAEN---DSLYNTPPCFGIYMCGLVFEDLLA 260 (365)
T ss_pred Hc---CEEE--Eeccccc-CCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhc---CCccCChhHHHHHHHHHHHHHHHH
Confidence 87 5654 6999988 7999 99999997643311111100011111111 122569999999999999999998
Q ss_pred hcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 260 LITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
+.|++.++++++++++++++.|++++++
T Consensus 261 ~gGl~~~~~r~~~~a~~l~~~l~~~~G~ 288 (365)
T PLN02452 261 QGGLKAMEKRNIRKADLLYDAIDESNGF 288 (365)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6589999999999999999999987754
No 152
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.78 E-value=7.9e-18 Score=163.63 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=152.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--------CCCCeEEEecCCCCCccccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--------KPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
+.+.+++ +++++++|.+.. .+..++|+.++++.++++- ...++|+++..+|+++..+.
T Consensus 543 q~i~elq----~~l~eLtGmd~~----Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa------ 608 (954)
T PRK12566 543 AMIDELE----AWLCAITGFDAI----CMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASA------ 608 (954)
T ss_pred HHHHHHH----HHHHHHHCCCeE----eecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHH------
Confidence 3445555 999999999973 4777888877766555542 23468899999998885432
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEE-cCCCCC-CcccHHHHHHHHHhcCCEEEEehhhhcc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA-GASAYA-RLYDYERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~-~~~~~G-~~~~~~~i~~la~~~g~~livD~a~~~g 173 (297)
...| ++.+.++.+ +++.+|+++|++.+++. ++.+|++ +++++| ...|+++|+++||++|+++++|++|..+
T Consensus 609 --~~~G--ieVv~Vp~D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a 683 (954)
T PRK12566 609 --QMAG--MRVVIVECD-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNA 683 (954)
T ss_pred --HHCC--CEEEEeccC-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhh
Confidence 2234 333445666 57899999999999832 4556666 566666 4567999999999999999999999887
Q ss_pred cccccC-CCCCCCCccEEEecCCccCCCCCc-eEEEEec-Cchh---hccCCccchhhHHHHhhhcccCCCCCCCchHHH
Q 022463 174 LVAAGV-IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRK-GVKE---INKQGKEVFYDYEEKINQAVFPGLQGGPHNHTI 247 (297)
Q Consensus 174 ~~~~~~-~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~-~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 247 (297)
...... ... |+|++++++||||++|.| |..+... ..+. ++..++++. +... ... ..+..+..++...
T Consensus 684 ~~~l~~Pg~~---GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~-d~~G--~~~-r~ga~S~~~~gsa 756 (954)
T PRK12566 684 QVGLARPADI---GADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVV-PVEG--PDP-NNGAVSAAPWGSA 756 (954)
T ss_pred ccCCCChhhc---CCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCc-CCCC--CCC-CCCceeecccchH
Confidence 776652 334 899999999999999998 7666555 3221 122222210 0000 000 0111222334443
Q ss_pred HHHHHHHHHHhhhcChhhHHHHh--hhhHHHHHhhccCCCC
Q 022463 248 TGLAVALKQVCTLITFSHIHVFS--LHVYPAFVSNQNNSEN 286 (297)
Q Consensus 248 ~al~~al~~~~~~~g~~~~~~~~--~~l~~~l~~~l~~~~~ 286 (297)
.-+..|+.++... |.+..+... ..+++|+.++|.+...
T Consensus 757 ~~l~~A~~Yi~~l-G~eLk~aa~~ailnAnYla~rL~~~~~ 796 (954)
T PRK12566 757 SILPISWMYIAMM-GPQLADASEVAILSANYLANQLGGAFP 796 (954)
T ss_pred HHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHhHhhCC
Confidence 3455667677666 777434444 6788899999976433
No 153
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.77 E-value=2.3e-17 Score=148.29 Aligned_cols=209 Identities=20% Similarity=0.173 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecC---CCCCcccccccccccccceeeeee
Q 022463 31 AESLCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDL---PHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 31 ~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~---~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
+.+..++++++++|.++++ +++++|+ .+|..++.++++|||+|+++.. .|.+... ++++.|..+
T Consensus 55 ~~~~Le~~lA~~~g~~~e~----ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~--------~~~l~ga~~ 122 (346)
T TIGR03576 55 FEEKVQELGREHLGGPEEK----ILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPR--------SCKLAGAEY 122 (346)
T ss_pred HHHHHHHHHHHHcCCCcce----EEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHH--------HHHHcCCEE
Confidence 3444449999999997664 5555555 7898899999999999997533 3333322 233444322
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEc-CCCCCCc---ccHHHHHHHHHhcCCEEEEehhhhcccccc-cCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARL---YDYERIRKVCNKQKAIMLADMAHISGLVAA-GVIP 181 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~-~~~~G~~---~~~~~i~~la~~~g~~livD~a~~~g~~~~-~~~~ 181 (297)
+ .. .|+++++. .+ ++++|+++ .+..|.+ .|+++|.++|+++|+++++|+||+.+.... +...
T Consensus 123 --~--~~------~~l~~l~~--~~-~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~ 189 (346)
T TIGR03576 123 --F--ES------DELSELKK--ID-GTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPP 189 (346)
T ss_pred --e--cc------CCHHHHhh--Cc-CceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCC
Confidence 1 11 24455432 23 68888884 4446766 688999999999999999999998875432 1111
Q ss_pred CCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 182 SPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
....++|+++.|++|+++|+++|++++++ ++.+.+.....+... +.+.+..++..++|+.+.
T Consensus 190 ~~~~~~divv~s~SKalaG~r~G~v~~~~--------------~li~~l~~~~~~~~~-s~~~~~~~aa~~aL~~~~--- 251 (346)
T TIGR03576 190 ALDLGADLVVTSTDKLMDGPRGGLLAGRK--------------ELVDKIKSVGEQFGL-EAQAPLLAAVVRALEEFE--- 251 (346)
T ss_pred HHHcCCcEEEeccchhccccceEEEEeCH--------------HHHHHHHHhhcCccc-CccHHHHHHHHHHHhhcc---
Confidence 00015799999999999999999999988 455555544333322 345556677777776532
Q ss_pred ChhhHHHHhhhhHHHHHhhccC
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
.+..++..++..+++.+.+++
T Consensus 252 -~~~~~~~l~~r~~~~~~~l~~ 272 (346)
T TIGR03576 252 -LSRIRDAFKRKEEVYLRLFDK 272 (346)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 234455555555555555543
No 154
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.77 E-value=3.3e-17 Score=149.55 Aligned_cols=226 Identities=15% Similarity=0.092 Sum_probs=140.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 100 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 100 (297)
|.......+++ +.+++++|+++++ +++++|++ ++..++.+++.+||.|++++..|.... ..+.
T Consensus 62 y~~~~g~~~lr----~~ia~~l~~~~~~----v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~--------~~~~ 125 (380)
T PRK06225 62 YPPPEGFPELR----ELILKDLGLDDDE----ALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIID--------NFAS 125 (380)
T ss_pred CCCCcchHHHH----HHHHHhcCCCCCc----EEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH--------HHHH
Confidence 44445567777 8888999998764 88888884 666678888999999999875544321 1122
Q ss_pred eeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc---
Q 022463 101 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS--- 172 (297)
Q Consensus 101 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~--- 172 (297)
..|..+..+++..+++++.+|++.+++.+++ +++++++ +++| +|.+.+ +++|.++|+++|+++|+|+++.-
T Consensus 126 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 204 (380)
T PRK06225 126 RFGAEVIEVPIYSEECNYKLTPELVKENMDE-NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR 204 (380)
T ss_pred HhCceEEeeccccccCCccCCHHHHHhhcCC-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc
Confidence 3343344444322223468999999999987 8888887 6777 787654 78899999999999999998641
Q ss_pred ccccc-cCCCCCCCCccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHH
Q 022463 173 GLVAA-GVIPSPFEYADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITG 249 (297)
Q Consensus 173 g~~~~-~~~~~~~~~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a 249 (297)
+..+. ...+ ...+++.|++|+++.| +.|+++++++ +.+.+...... ..+.+.....+
T Consensus 205 ~~~~~~~~~~----~~~i~~~s~SK~~g~~G~RiG~i~~~~~--------------l~~~~~~~~~~--~~~~~~~~~~~ 264 (380)
T PRK06225 205 EHTLAAEYAP----EHTVTSYSFSKIFGMAGLRIGAVVATPD--------------LIEVVKSIVIN--DLGTNVIAQEA 264 (380)
T ss_pred cCCchhhcCC----CCEEEEeechhhcCCccceeEEEecCHH--------------HHHHHHHHHhc--ccCCCHHHHHH
Confidence 11110 0011 3356777889988322 2399998773 33333322111 11223344444
Q ss_pred HHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 250 LAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 250 l~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+.++++... . -++++++..+...+++.+.|++++.
T Consensus 265 a~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~~~ 299 (380)
T PRK06225 265 AIAGLKVKD-E-WIDRIRRTTFKNQKLIKEAVDEIEG 299 (380)
T ss_pred HHHHHhcch-H-HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 444444321 1 2455555556666777777776554
No 155
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.77 E-value=2e-17 Score=151.55 Aligned_cols=237 Identities=13% Similarity=0.075 Sum_probs=149.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|.......++++.+.+++.+.+| +++++ +++|+|++ ++..++.+++++||.|++++.+|.+....
T Consensus 65 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~------- 133 (391)
T PRK08361 65 HYTPNAGIPELREAIAEYYKKFYGVDVDVDN----VIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVED------- 133 (391)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCccc----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHH-------
Confidence 354445678888766677666655 45554 88888884 66667888899999999998777665432
Q ss_pred ccceeeeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
+...|..+..+ +.+++ ++.+|++++++.+++ +++++++ +++| +|...| +++|.++|+++++++|+|++++
T Consensus 134 -~~~~g~~~~~v--~~~~~~~~~~d~~~l~~~i~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~ 209 (391)
T PRK08361 134 -AKIAEAKPIRI--PLREENEFQPDPDELLELITK-RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYE 209 (391)
T ss_pred -HHHcCCEEEEE--ecCCccCCCCCHHHHHHhccc-ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccc
Confidence 22334334344 44433 467999999999987 8888888 7888 899888 7788999999999999999975
Q ss_pred cccccccCC-C-CCCC-CccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHH
Q 022463 172 SGLVAAGVI-P-SPFE-YADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHT 246 (297)
Q Consensus 172 ~g~~~~~~~-~-~~~~-~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~ 246 (297)
......... . ..+. ..++++.|++|.++.|. .|+++++++ +.+.+.... ....++.+...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~ 274 (391)
T PRK08361 210 HFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQ--------------VIKDMIKLH-AYIIGNVASFV 274 (391)
T ss_pred cceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHH--------------HHHHHHHHH-hhhccCCChHH
Confidence 332211100 0 0011 34688899999874443 399998763 333332211 10112223333
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
..++..+|+.-.....+++.+++.++..+.+.+.|++++.+
T Consensus 275 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 315 (391)
T PRK08361 275 QIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHI 315 (391)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33333333211100135667777778888888888876554
No 156
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.77 E-value=7.9e-17 Score=148.17 Aligned_cols=237 Identities=10% Similarity=0.032 Sum_probs=147.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CC-CCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DP-EKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~-~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
..|++.....++++.+.+++++.+|. ++ ++ |++|+|++ +...++.+++++||+|+++.+.|+.....
T Consensus 72 ~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~----I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~----- 142 (405)
T PRK06207 72 QAYTEYRGDADIRELLAARLAAFTGAPVDAADE----LIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL----- 142 (405)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----EEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH-----
Confidence 34665666788998888999998885 44 43 99999984 66668888899999999998776654322
Q ss_pred ccccceeeeeeEeeeccc--CCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEeh
Q 022463 96 TKKISAVSIFFETMPYRL--NESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~~--~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~ 168 (297)
+...|.++..++++. ...++.+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|++||+++|+|+
T Consensus 143 ---~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De 218 (405)
T PRK06207 143 ---VEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA-GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQ 218 (405)
T ss_pred ---HHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh-cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 223333343443321 112468999999999987 8898877 7888 898887 5678888999999999999
Q ss_pred hhhcccccccCCCC--CCC-Ccc--EEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 169 AHISGLVAAGVIPS--PFE-YAD--VVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 169 a~~~g~~~~~~~~~--~~~-~~D--~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
+++--......... .+. ..| +++.|++|.++ |-+-|+++.+++ +.+.+....... ...
T Consensus 219 ~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~--------------l~~~~~~~~~~~-~~~ 283 (405)
T PRK06207 219 LYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPA--------------IIDRMEKLQAIV-SLR 283 (405)
T ss_pred cccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHH--------------HHHHHHHHHhHh-ccC
Confidence 97532211110110 000 112 67889999874 444599988773 333333221111 111
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
.+.+...++..+++. ...-+++..++.++..+++.+.|++++.
T Consensus 284 ~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 326 (405)
T PRK06207 284 AAGYSQAVLRTWFSE--PDGWMKDRIARHQAIRDDLLRVLRGVEG 326 (405)
T ss_pred CCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222333333333321 0101344455556667777777776644
No 157
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.77 E-value=2e-17 Score=152.38 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=119.0
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
.++...++| +++++++|.+. .++++||+.++..++.+++++||+|+++...|++.+..+... +...|
T Consensus 55 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~----~~~~G 121 (418)
T TIGR01326 55 MNPTTDVLE----QRIAALEGGVA-----ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHT----LKRLG 121 (418)
T ss_pred CChhHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHH----HHHcC
Confidence 446667777 99999999854 488888888887788888999999999987776654432211 11122
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ +.++. .|++++++++++ ++++|++ +++| +|.+.|+++|.++|+++|+++|+|++++.+.....+ .
T Consensus 122 ~~v--~~v~~------~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l-~ 191 (418)
T TIGR01326 122 IEV--RFVDP------DDPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPI-D 191 (418)
T ss_pred cEE--EEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCch-h
Confidence 223 33232 278999999987 8999999 6777 789999999999999999999999998766322211 1
Q ss_pred CCCCCccEEEecCCccCCCCCc--eEEEEec
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG--AMIFFRK 210 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g--G~i~~~~ 210 (297)
. ++|++++|++|+++++.. |++++++
T Consensus 192 ~---g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 192 H---GADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred c---CCeEEEECccccccCCccceEEEEEec
Confidence 2 799999999999977544 5556543
No 158
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.76 E-value=5.8e-17 Score=149.20 Aligned_cols=231 Identities=17% Similarity=0.153 Sum_probs=150.9
Q ss_pred cCCCCCCCCccCCC-chhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcC--CCCeEEEecCCCCCc
Q 022463 11 KYSEGYPGARYYGG-NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK--PHDRIMALDLPHGGH 87 (297)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~--~gd~Vl~~~~~~~~~ 87 (297)
+|+-+..+++...+ .+...++| +++++++|.+. .++++||+++|..++..+.+ +||.|++....|++.
T Consensus 74 ~~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~-----~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~ 144 (406)
T PRK13393 74 TCGAGAGGTRNISGTNHYHVLLE----AELADLHGKEA-----ALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASM 144 (406)
T ss_pred HcCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHH
Confidence 34333334444322 34556666 99999999754 49999999999988887755 788888888888887
Q ss_pred ccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCC
Q 022463 88 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA-GASA-YARLYDYERIRKVCNKQKA 162 (297)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~ 162 (297)
..++.. .+.....+ +. .|++++++.+.. .++++|++ +..+ +|.+.|+++|.++|+++|+
T Consensus 145 ~~~~~~--------~g~~~~~~--~~------~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~ 208 (406)
T PRK13393 145 IEGIRH--------SRAEKRIF--RH------NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGA 208 (406)
T ss_pred HHHHHH--------cCCeEEEe--CC------CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCC
Confidence 655431 22222222 21 367777777753 25677877 5555 7999999999999999999
Q ss_pred EEEEehhhhccccc-cc--CCCC-C-CCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCC
Q 022463 163 IMLADMAHISGLVA-AG--VIPS-P-FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG 237 (297)
Q Consensus 163 ~livD~a~~~g~~~-~~--~~~~-~-~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 237 (297)
++++|++|+.|... .+ .... . ....|+++.+++|.++. .||+++.++ ++.+.+.....+.
T Consensus 209 ~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~--------------~~~~~l~~~~~~~ 273 (406)
T PRK13393 209 MTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSA--------------ALCDFIRSFASGF 273 (406)
T ss_pred EEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCH--------------HHHHHHHHhCcCc
Confidence 99999999977642 11 1000 0 11468888899999854 568887766 3344443322222
Q ss_pred C-CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 238 L-QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 238 ~-~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
. .++.+....+++.++|+.+.+. +.. +++.+++.+++.+.|+++
T Consensus 274 ~~t~~~~p~~~aa~~aaL~~~~~~-~~~--~~~~~~~~~~l~~~L~~~ 318 (406)
T PRK13393 274 IFTTSLPPAVAAGALASVRHLKAS-SAE--RERHQDRVARLRARLDKA 318 (406)
T ss_pred eecCccCHHHHHHHHHHHHHHhhC-HHH--HHHHHHHHHHHHHHHHHc
Confidence 1 3445556677888899887654 322 345566777777777654
No 159
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.76 E-value=2.3e-17 Score=163.52 Aligned_cols=232 Identities=13% Similarity=0.059 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHH---HHHh-cCCCC----eEEEecCCCCCccccccccccccc
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQV---YTAL-LKPHD----RIMALDLPHGGHLSHGYQTDTKKI 99 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~---~~~~-~~~gd----~Vl~~~~~~~~~~~~~~~~~~~~~ 99 (297)
.-+++.+.++++++++|.+. +.+..++|++++++. ++.+ .++|| +|++++..|+++...+
T Consensus 540 ~l~~i~e~q~~l~eltG~d~----~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa-------- 607 (954)
T PRK05367 540 YRELIDQLEAWLAEITGYDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASA-------- 607 (954)
T ss_pred HHHHHHHHHHHHHHHHCCCC----EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHH--------
Confidence 55677777799999999985 234444555566433 3333 35665 6999999998886543
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEE-cCCCCCC-cccHHHHHHHHHhcCCEEEEehhhhcccc
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA-GASAYAR-LYDYERIRKVCNKQKAIMLADMAHISGLV 175 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~-~~~~~G~-~~~~~~i~~la~~~g~~livD~a~~~g~~ 175 (297)
...|.+++.+ +.+ .++.+|+++|++.++++ ++.+|++ +++++|. ..|+++|+++||++|+++++|+||..+..
T Consensus 608 ~~~G~~vv~v--~~d-~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~ 684 (954)
T PRK05367 608 VMAGMKVVVV--ACD-ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQV 684 (954)
T ss_pred HHCCCEEEEE--CCC-CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhcc
Confidence 2334334444 555 56899999999999763 3556666 4555675 47999999999999999999999987766
Q ss_pred cccCC-CCCCCCccEEEecCCccCCCCCc------eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch---H
Q 022463 176 AAGVI-PSPFEYADVVTTTTHKSLRGPRG------AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN---H 245 (297)
Q Consensus 176 ~~~~~-~~~~~~~D~~~~s~~K~l~gp~g------G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~---~ 245 (297)
.+... .. ++|++++|+||||++|.| |++++++... +.+.|+..-.. .... ..+...+.++ .
T Consensus 685 ~l~~pg~~---GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~-p~lpg~~v~~~---~~~~--~~g~v~ta~~g~al 755 (954)
T PRK05367 685 GLARPGDI---GADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLA-PFLPGHPVQIA---GGET--GIGAVSAAPFGSAS 755 (954)
T ss_pred CCCChhhc---CCCEEEecCcccCCCCcCCCCCceEEEeeccccc-ccCCCCccCcC---CCCC--CcCcchhHHHHHHH
Confidence 54321 22 899999999999976665 4788876431 11112110000 0000 0011111122 1
Q ss_pred HHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 246 TITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 246 ~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.+...+..+..+... |+.++.++...+++|+.++|++.
T Consensus 756 ~~~~a~~yi~~~G~~-Glr~~a~~~~~~A~Yl~~~L~~~ 793 (954)
T PRK05367 756 ILPISWMYIRMMGAE-GLRQATEVAILNANYIAKRLKDH 793 (954)
T ss_pred HHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 222233334444444 56666666669999999999775
No 160
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.76 E-value=1e-16 Score=147.00 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=150.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+...+..++++.+.+++.+.++. ++++ .+++|+|++ +...++.++++|||+|+++.++|+.......
T Consensus 67 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~---~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~---- 139 (394)
T PRK05942 67 HGYPPFEGTASFRQAITDWYHRRYGVELDPDS---EALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPL---- 139 (394)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCC---eEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH----
Confidence 45666667788897777777776664 4442 388888984 6655777889999999999977766543222
Q ss_pred cccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhh
Q 022463 97 KKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~ 170 (297)
..|.++..+ +.+. +++.+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|+++|+++|+|+++
T Consensus 140 ----~~g~~~~~v--~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y 212 (394)
T PRK05942 140 ----IAGAQIYPI--ILKPENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCY 212 (394)
T ss_pred ----HcCCEEEEe--ecCCccCCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccc
Confidence 233334344 4442 3467999999999986 8999999 6888 898887 668888899999999999997
Q ss_pred hccccc----ccCCCCC-CCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCc
Q 022463 171 ISGLVA----AGVIPSP-FEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPH 243 (297)
Q Consensus 171 ~~g~~~----~~~~~~~-~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~ 243 (297)
...... ..+...+ .....+++.|++|.++.|. -|+++.+++ +.+.+...... ...+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~--------------l~~~l~~~~~~-~~~~~~ 277 (394)
T PRK05942 213 AELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRH--------------IIQGLRTLKTN-LDYGIF 277 (394)
T ss_pred hhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHH--------------HHHHHHHHHhh-cccCCC
Confidence 533211 1110000 0123467789999763332 399998773 44444332211 111223
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.....++..+++.. +. .+++++++.++..+++.+.|++.
T Consensus 278 ~~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~L~~~ 316 (394)
T PRK05942 278 SALQKAAETALQLP-DS-YLQQVQERYRTRRDFLIQGLGEL 316 (394)
T ss_pred HHHHHHHHHHHhCc-HH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 34444555555422 23 45667777777778888877665
No 161
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.76 E-value=1.6e-17 Score=150.35 Aligned_cols=220 Identities=19% Similarity=0.159 Sum_probs=144.8
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccc-ccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT-DTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~~~~~~ 102 (297)
+++....+| +.++++.|++. .+++.||.+|..+++.+++++||+|+++...|++........ ...+++
T Consensus 53 gnPt~~~le----~~la~Le~g~~-----a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~-- 121 (386)
T PF01053_consen 53 GNPTVRALE----QRLAALEGGED-----ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE-- 121 (386)
T ss_dssp C-HHHHHHH----HHHHHHHT-SE-----EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--
T ss_pred ccccHHHHH----HHHHHhhcccc-----eeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--
Confidence 668888999 99999999865 488889998887788999999999999987776665444322 222332
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcC-CEEEEehhhhcccccccC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQK-AIMLADMAHISGLVAAGV 179 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g-~~livD~a~~~g~~~~~~ 179 (297)
...+ | .-|++++++++++ +|++|++ +++| +..+.|+++|+++||++| ++++||.+.+.+..-
T Consensus 122 -----v~~~--d----~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~--- 186 (386)
T PF01053_consen 122 -----VTFV--D----PTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQ--- 186 (386)
T ss_dssp -----EEEE--S----TTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC---
T ss_pred -----EEEe--C----chhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeee---
Confidence 2222 2 2478999999998 9999999 8888 679999999999999999 999999996655322
Q ss_pred CCCCCC-CccEEEecCCccCCCCC---ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHH
Q 022463 180 IPSPFE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 255 (297)
Q Consensus 180 ~~~~~~-~~D~~~~s~~K~l~gp~---gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~ 255 (297)
.|+. |+|+++.|.+|+++|-. +|+++++++. .+.+++...... ...+.+....+-+..+++
T Consensus 187 --~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~------------~~~~~l~~~~~~-~G~~~~p~da~ll~rgl~ 251 (386)
T PF01053_consen 187 --NPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSS------------ELYDRLREFRRL-LGATLSPFDAWLLLRGLR 251 (386)
T ss_dssp ---GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHH------------HHHHHHHHHHHH-HT-B--HHHHHHHHHHHT
T ss_pred --ccCcCCceEEEeeccccccCCcceeeEEEEECchh------------hhhhhhcchhhh-cCccchHHHHHHHhcCCC
Confidence 2333 89999999999998865 4777777621 233332211100 011222223333223332
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+..+.+++.+.+..+.+.|++.|.|+.+
T Consensus 252 ------Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V 280 (386)
T PF01053_consen 252 ------TLPLRMERQNENAEALAEFLEEHPKVKRV 280 (386)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHTSTTEEEE
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 44556666677778888888888888754
No 162
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.75 E-value=1.9e-16 Score=144.94 Aligned_cols=232 Identities=12% Similarity=0.008 Sum_probs=146.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCC---CCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLD---PEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~---~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
.|+......++++.+++++++.+|.+ ++ ++++++|++ +...++.+++++||+|+++.+.|..+...
T Consensus 60 ~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~----~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~------ 129 (389)
T PRK05957 60 KYQAVQGIPPLLEAITQKLQQDNGIELNNEQ----AIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMA------ 129 (389)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----eEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHH------
Confidence 45555667788888889999998974 33 489999984 66557777889999999988665544221
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
....|..+..+ +.+ .++.+|++++++.+++ ++++|++ +++| +|.+.| +++|.++|+++|+++|+|+++.
T Consensus 130 --~~~~g~~~~~v--~~~-~~~~~d~~~l~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~ 203 (389)
T PRK05957 130 --ITMAGCQPILV--PTD-DNYQLQPEAIEQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYE 203 (389)
T ss_pred --HHhcCCEEEEe--ecC-CCCCcCHHHHHHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccch
Confidence 22234334344 444 5678999999999987 8999988 7777 898887 7889999999999999999965
Q ss_pred cccccccCCCCCC---C--CccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 172 SGLVAAGVIPSPF---E--YADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 172 ~g~~~~~~~~~~~---~--~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
--.........+. + .--+++.|++|.++.|. -|+++++++ +.+++....... ..+++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~--------------~~~~~~~~~~~~-~~~~~~ 268 (389)
T PRK05957 204 YFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIH--------------LLEAIKKIQDTI-LICPPV 268 (389)
T ss_pred hccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHH--------------HHHHHHHHHhhc-ccCCCc
Confidence 2221110000000 0 12367889999773333 399998773 444443322111 112222
Q ss_pred HHHHHHHHHHHHHhhh-cChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 245 HTITGLAVALKQVCTL-ITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 245 ~~~~al~~al~~~~~~-~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+.-.++..+| .+. .-+++..++.++.++++.+.|++++.
T Consensus 269 ~~q~~~~~~l---~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 308 (389)
T PRK05957 269 VSQYAALGAL---QVGKSYCQQHLPEIAQVRQILLKSLGQLQD 308 (389)
T ss_pred HHHHHHHHHH---hCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3322222323 221 01344555566677777777776654
No 163
>PRK07550 hypothetical protein; Provisional
Probab=99.75 E-value=1.3e-16 Score=145.94 Aligned_cols=234 Identities=14% Similarity=0.020 Sum_probs=146.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+..|. +++ +|++|+|+ +++..++.+++++||.|+++.+.|..+...
T Consensus 62 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~------- 130 (386)
T PRK07550 62 LYGPVEGLPELREAYAAHYSRLYGAAISPE----QVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMW------- 130 (386)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----eEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH-------
Confidence 3444456788888888888877775 444 49999998 466667788899999999998666544321
Q ss_pred ccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
+...|..+ ++++.++ .+..+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|+++|+++|+|++++
T Consensus 131 -~~~~g~~~--~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~ 206 (386)
T PRK07550 131 -LDMLGIRP--VYLPCDEGPGLLPDPAAAEALITP-RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYR 206 (386)
T ss_pred -HHhcCCEE--EEEecCCCcCCCCCHHHHHHHhcc-cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccch
Confidence 22233334 4445553 3456899999999987 8888877 7888 787776 6799999999999999999875
Q ss_pred cccccccCCCCCCC-----CccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 172 SGLVAAGVIPSPFE-----YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 172 ~g~~~~~~~~~~~~-----~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
.-..........+. .-.+++.|++|.++ |.+.|+++++++ +.+.+....... ..+++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~--------------~~~~~~~~~~~~-~~~~s~ 271 (386)
T PRK07550 207 DFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPA--------------RIAEIEKFMDTV-AICAPR 271 (386)
T ss_pred hhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHH--------------HHHHHHHHHhhc-ccCCCc
Confidence 32111000000110 11356889999875 444599998763 333333221111 122334
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
....++..+++.+. . -.++.+++.++..+++.+.|+..+.
T Consensus 272 ~~q~~~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~~~ 311 (386)
T PRK07550 272 IGQIAVAWGLPNLA-D-WRAGNRAEIARRRDAFRAVFARLPG 311 (386)
T ss_pred HHHHHHHHHhccHH-H-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444445554322 2 3344555666667777777766543
No 164
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.75 E-value=3.5e-17 Score=148.37 Aligned_cols=215 Identities=16% Similarity=0.073 Sum_probs=135.7
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccc-ccccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGY-QTDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~~~~~~ 102 (297)
.++....+| ++++++. .+ + .+++++|+.++..++.+++++||+|+++...|........ .+.. .
T Consensus 49 ~~p~~~~Le----~~lA~l~-~~-~----~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~-----~ 113 (366)
T PRK07582 49 SNPTWRALE----AALGELE-GA-E----ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP-----L 113 (366)
T ss_pred CCccHHHHH----HHHHHHc-CC-C----EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc-----C
Confidence 446678888 8888888 22 2 4888999987777888889999999998866655432211 1111 2
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
|..+..+ +.+ +.. + .+.+ ++++|++ +++| +|.+.|+++|.++|+++|+++++|++++... +..
T Consensus 114 G~~v~~v--~~~-~~~-------~-~~~~-~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~---~~~ 178 (366)
T PRK07582 114 GVTVREA--PTA-GMA-------E-AALA-GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPL---GQR 178 (366)
T ss_pred eEEEEEE--CCC-ChH-------H-Hhcc-CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCcc---ccC
Confidence 3223333 333 111 1 2334 7899998 7877 6789999999999999999999999975321 111
Q ss_pred CCCCC-CccEEEecCCccCCCCCc---eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 022463 181 PSPFE-YADVVTTTTHKSLRGPRG---AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 256 (297)
Q Consensus 181 ~~~~~-~~D~~~~s~~K~l~gp~g---G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~ 256 (297)
|++ ++|++++|++||++|+.| |+++++++ ++.+++..... ....+++....+-+..+++
T Consensus 179 --p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~-------------~l~~~l~~~~~-~~g~~~~~~~a~l~~r~l~- 241 (366)
T PRK07582 179 --PLELGADLVVASDTKALTGHSDLLLGYVAGRDP-------------ELMAAVERWRL-LAGAIPGPFEAWLAHRSLG- 241 (366)
T ss_pred --chhcCCcEEEecccccccCCCCeeEEEEEcCcH-------------HHHHHHHHHHH-HhCCCCCHHHHHHHHhccc-
Confidence 112 789999999999999775 77877543 23333221111 0112233333333333333
Q ss_pred HhhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 257 VCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 257 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.++...+++.+.+..+.+.|++.|.|+.+
T Consensus 242 -----tl~~R~~~~~~na~~la~~L~~~p~v~~v 270 (366)
T PRK07582 242 -----TLGLRFARQCANALAVAELLAGHPAVRGV 270 (366)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 23444466667778888888888887753
No 165
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.75 E-value=3.6e-18 Score=149.05 Aligned_cols=174 Identities=21% Similarity=0.262 Sum_probs=126.3
Q ss_pred CCCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccccc
Q 022463 16 YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 16 ~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
.-|...|+..++..+++ ++++++||.+. .+++.+||.+|..+++++++|++.|++....|..+..
T Consensus 19 ~~gd~~Yg~D~~~~~l~----~~i~~l~g~e~-----a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E------ 83 (290)
T PF01212_consen 19 NVGDDAYGEDPTTARLE----ERIAELFGKEA-----ALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDE------ 83 (290)
T ss_dssp TSB-CCTTSSHHHHHHH----HHHHHHHTSSE-----EEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSS------
T ss_pred ccCCcccCCChhHHHHH----HHHHHHcCCCE-----EEEeCCCChHHHHHHHHHHhcCCceeccccceeeeec------
Confidence 34455799999999999 88899999875 3788899999999999999999999998754433322
Q ss_pred cccc-ceeeeeeEeeecccCCCCCcCCHHHHHHHhhh-----cCCcEEEE-cCCCC--CCccc---HHHHHHHHHhcCCE
Q 022463 96 TKKI-SAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVA-GASAY--ARLYD---YERIRKVCNKQKAI 163 (297)
Q Consensus 96 ~~~~-~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~-~~~~~--G~~~~---~~~i~~la~~~g~~ 163 (297)
..++ .+.|..+ ++++.+ +++.+|+++|++.+.+ .+|++|++ ++++. |.+.+ +++|.++||+||++
T Consensus 84 ~ga~~~~~G~~~--~~l~~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~ 160 (290)
T PF01212_consen 84 TGAIEELSGAKL--IPLPSD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLP 160 (290)
T ss_dssp TTHHHHHTTCEE--EEEBEC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-E
T ss_pred cchhhHhcCcEE--EECCCc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceE
Confidence 2222 3445444 433443 3389999999999987 35788888 67777 77765 45777889999999
Q ss_pred EEEehhhhc------ccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecC
Q 022463 164 MLADMAHIS------GLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 211 (297)
Q Consensus 164 livD~a~~~------g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~ 211 (297)
+++|+|... +..+.++-. ++|.+++|++|.++.|.|++++++++
T Consensus 161 lhmDGARl~~a~~~~~~~~~e~~~----~~D~v~~~~tK~~g~~~Gavl~~~~~ 210 (290)
T PF01212_consen 161 LHMDGARLANAAAALGVSLAEIAA----GADSVSFGGTKNGGAPGGAVLAGNKE 210 (290)
T ss_dssp EEEEETTHHHHHCHHHHHHHHHHT----TSSEEEEETTSTT-SSSEEEEEESHH
T ss_pred EEEehhhHHHhhhcccccHHHHhh----hCCEEEEEEEcccccccceEEEechH
Confidence 999998643 222222222 79999999999999999999999996
No 166
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.74 E-value=2e-16 Score=142.87 Aligned_cols=231 Identities=10% Similarity=-0.010 Sum_probs=146.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCC---CeEEEecCCCCCccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPH---DRIMALDLPHGGHLSHGYQ 93 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~g---d~Vl~~~~~~~~~~~~~~~ 93 (297)
..|+...+..++++.+.+++.+..|. ++++ +|++|+|++ +...++.+++++| |+|+++.+.|......
T Consensus 30 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~--- 103 (350)
T TIGR03537 30 SQYPSALGTKALREAISGWFERRFGVKLDPDA---QVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERG--- 103 (350)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHH---
Confidence 34565566788897777888776674 4541 399999994 6555778888887 6999998666555432
Q ss_pred ccccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEe
Q 022463 94 TDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 94 ~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD 167 (297)
+...|..+ ++++.+. .++.+|++++++++.+ +++++++ +++| +|.+.| +++|.++|+++|+++|+|
T Consensus 104 -----~~~~g~~~--~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~D 175 (350)
T TIGR03537 104 -----ALFAGGEP--TAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSD 175 (350)
T ss_pred -----HHhcCCEE--EEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEe
Confidence 33444334 4444542 3456899999999987 8999988 6777 898887 778889999999999999
Q ss_pred hhhhcccccccCCCCCC---C-CccEEEecCCccCCC--CCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 168 MAHISGLVAAGVIPSPF---E-YADVVTTTTHKSLRG--PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 168 ~a~~~g~~~~~~~~~~~---~-~~D~~~~s~~K~l~g--p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
+++....... ...+. + .-.+++.|++|.++. -+.|+++.++ .+.+.+......... +
T Consensus 176 e~y~~~~~~~--~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~--------------~~~~~~~~~~~~~~~-~ 238 (350)
T TIGR03537 176 ECYTEIYFGE--PPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDE--------------KLISFLRKLRANFGV-A 238 (350)
T ss_pred ccccccccCC--CCCchhhcCcCCEEEEeecccccCCccccceeeecCH--------------HHHHHHHHHHHhhcc-C
Confidence 9975322111 11111 1 123677799998643 3348888665 334433332211112 2
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.+.....++.+++. .....++++++.++..+.+.+.|++.
T Consensus 239 ~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~~ 278 (350)
T TIGR03537 239 SPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNKV 278 (350)
T ss_pred CCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 22233333333332 22144566677777777777777665
No 167
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.74 E-value=4.9e-17 Score=140.78 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=116.6
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccc-ccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT-DTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~~~~~~ 102 (297)
.++..+.+| ++++.+-|.-. .+.+.||.++...++..+.++||+|+....=+++........ ...|++
T Consensus 60 ~NPT~~vlE----~RiAaLEGG~a-----a~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~-- 128 (426)
T COG2873 60 MNPTTDVLE----ERIAALEGGVA-----ALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIE-- 128 (426)
T ss_pred cCchHHHHH----HHHHHhhcchh-----hhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcE--
Confidence 568889999 88888887654 378889998887799999999999999887777766544322 233333
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
..+++ .-|++.++++|++ +||+|++ +..| -+.+.|++.|.++||++|+++|||.+-+.+.+-
T Consensus 129 -----v~fvd------~~d~~~~~~aI~~-nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~---- 192 (426)
T COG2873 129 -----VRFVD------PDDPENFEAAIDE-NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLC---- 192 (426)
T ss_pred -----EEEeC------CCCHHHHHHHhCc-ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceec----
Confidence 33333 2369999999999 9999999 7777 468999999999999999999999985444322
Q ss_pred CCCCC-CccEEEecCCccCCC
Q 022463 181 PSPFE-YADVVTTTTHKSLRG 200 (297)
Q Consensus 181 ~~~~~-~~D~~~~s~~K~l~g 200 (297)
.|++ |+|+++.|.+||++|
T Consensus 193 -rP~~hGADIVvHS~TK~igG 212 (426)
T COG2873 193 -RPIEHGADIVVHSATKYIGG 212 (426)
T ss_pred -chhhcCCCEEEEeecccccC
Confidence 2333 899999999999977
No 168
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.74 E-value=7.8e-17 Score=153.81 Aligned_cols=222 Identities=16% Similarity=0.085 Sum_probs=155.2
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecc
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 112 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 112 (297)
++++.+|++||++.. .++++|| ++|.+++.+++++||.||++.+.|-|.+.. +.+.|+....+.-.
T Consensus 199 eAe~~aA~~fgAd~t-----yfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~a--------Lilsga~PVYl~P~ 265 (713)
T PRK15399 199 EAEEYIARTFGAEQS-----YIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHL--------LMMSDVVPIWLKPT 265 (713)
T ss_pred HHHHHHHHHhCCCcE-----EEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHH--------HHHcCCeeEEeccc
Confidence 345999999999974 7778888 589889999999999999999888887542 33444444433222
Q ss_pred cCCCC---CcCCH-----HHHHHHhhhc----CCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEE-EEehhhhccccccc
Q 022463 113 LNEST---GYIDY-----DQLEKSATLF----RPKLIVA-GASAYARLYDYERIRKVCNKQKAIM-LADMAHISGLVAAG 178 (297)
Q Consensus 113 ~~~~~---~~~d~-----~~l~~~l~~~----~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~l-ivD~a~~~g~~~~~ 178 (297)
.+ .. +.+++ +.+++++.++ +|+++++ +++-+|.+.++++|.++| |+.+ ++|+||.....-.+
T Consensus 266 ~n-~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p 341 (713)
T PRK15399 266 RN-ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHP 341 (713)
T ss_pred cc-ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCc
Confidence 22 22 24455 8999999752 2356777 566689999999999999 6776 69999976442222
Q ss_pred CC--CCCC-C--CccEE---EecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHH
Q 022463 179 VI--PSPF-E--YADVV---TTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITG 249 (297)
Q Consensus 179 ~~--~~~~-~--~~D~~---~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a 249 (297)
.. ..+. . ++|.+ +.|.||.|.+... ++|.++... + .++++..+.-..+++|+++.+++
T Consensus 342 ~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~v------------d-~~~~n~a~~m~~STSPsY~LmAS 408 (713)
T PRK15399 342 IYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEY------------D-EETFNEAFMMHTSTSPSYPIVAS 408 (713)
T ss_pred ccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCC------------C-HHHHHHHHHHHcCCCcHHHHHHH
Confidence 11 1221 1 47777 9999999999777 777665532 1 23444443333377899999999
Q ss_pred HHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 250 LAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 250 l~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+..|..++... .-+.+.++..+++..|++.+.++..
T Consensus 409 LD~a~~~m~~~-~G~~l~~~~i~~a~~fR~~l~~~~~ 444 (713)
T PRK15399 409 VETAAAMLRGN-PGKRLINRSVERALHFRKEVQRLRE 444 (713)
T ss_pred HHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999864 3355666677777888887776553
No 169
>PRK07324 transaminase; Validated
Probab=99.74 E-value=2e-16 Score=143.97 Aligned_cols=171 Identities=22% Similarity=0.255 Sum_probs=116.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcC-CCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g-~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
..|+......+++ +.++++++ .++++ |++|+|+ .++..++.+++.+||+|+++.+.|.....
T Consensus 56 ~~Y~~~~G~~~lr----~~ia~~~~~~~~~~----vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~-------- 119 (373)
T PRK07324 56 LTYGWIEGSPEFK----EAVASLYQNVKPEN----ILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYD-------- 119 (373)
T ss_pred ccCCCCCCCHHHH----HHHHHHhcCCChhh----EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------
Confidence 3455555667888 66667664 56654 8899988 57777888889999999998765544422
Q ss_pred ccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
.++..|..+..+ +.+. .++.+|++++++.+++ +|+++++ +++| +|.+.+ +++|.++|++||+++|+|+++.
T Consensus 120 ~~~~~g~~v~~v--~~~~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~ 196 (373)
T PRK07324 120 IPESLGAEVDYW--QLKEENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYR 196 (373)
T ss_pred HHHHcCCEEEEE--ecccccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc
Confidence 122333334444 4443 3456899999998887 8999988 7888 898888 7889999999999999999864
Q ss_pred cccccccCCCCCCC--CccEEEecCCccCC--CCCceEEEEec
Q 022463 172 SGLVAAGVIPSPFE--YADVVTTTTHKSLR--GPRGAMIFFRK 210 (297)
Q Consensus 172 ~g~~~~~~~~~~~~--~~D~~~~s~~K~l~--gp~gG~i~~~~ 210 (297)
. ....+......+ .-.+++.|++|.++ |.+-|++++++
T Consensus 197 ~-l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~ 238 (373)
T PRK07324 197 P-LDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANE 238 (373)
T ss_pred c-cccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCH
Confidence 2 211110110011 12366789999874 33349999866
No 170
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.74 E-value=3.2e-17 Score=156.51 Aligned_cols=223 Identities=16% Similarity=0.070 Sum_probs=158.0
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecc
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 112 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 112 (297)
++++.+|++||++.. .++++|| ++|.+++.+++++||.||++.+.|-|.+.. +.+.|+....+...
T Consensus 199 eAe~~AA~~fgAd~t-----yfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~ha--------Lilsga~PVYl~P~ 265 (714)
T PRK15400 199 EAEEYIARVFNADRS-----YMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHL--------MMMSDVTPIYFRPT 265 (714)
T ss_pred HHHHHHHHHhCCCcE-----EEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHH--------HHHcCCeEEEeccc
Confidence 355999999999974 7778888 589889999999999999999888887542 33444444443222
Q ss_pred cCCCC---CcCC-----HHHHHHHhhhc----CCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 113 LNEST---GYID-----YDQLEKSATLF----RPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 113 ~~~~~---~~~d-----~~~l~~~l~~~----~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
.+ .. +.++ ++.+++++.++ +|..+++ +++-+|.+.++++|.++|+.++ +++|+||..-..-.+.
T Consensus 266 rn-~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 266 RN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred cc-ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 22 21 2344 89999999862 2335666 6766899999999999999887 7999999765422222
Q ss_pred C--CCCC-CCc---c--EEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHH
Q 022463 180 I--PSPF-EYA---D--VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGL 250 (297)
Q Consensus 180 ~--~~~~-~~~---D--~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al 250 (297)
. ..+. .++ | +++.|.||.|.+... ++|.++... + .++++..+.-..+++|+++.++++
T Consensus 343 ~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~v------------d-~~~~n~a~~m~~STSPsY~l~ASL 409 (714)
T PRK15400 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV------------N-EETFNEAYMMHTTTSPHYGIVAST 409 (714)
T ss_pred cCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCC------------C-HHHHHHHHHHHcCCCcHHHHHHHH
Confidence 2 1222 255 5 999999999999777 666555432 1 234444433333778999999999
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
..|..++... .-+++.+...+++..|++.+.+++.
T Consensus 410 D~a~~~m~~~-~G~~l~~~~i~~a~~~R~~l~~~~~ 444 (714)
T PRK15400 410 ETAAAMMKGN-AGKRLINGSIERAIKFRKEIKRLRT 444 (714)
T ss_pred HHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999865 4456777777788888888877664
No 171
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.74 E-value=3.2e-16 Score=143.17 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=145.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCC--CCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+|.+ +++ .|++|+|+ ++...++..++++||.|+++.++|+.....
T Consensus 62 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~---~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~------- 131 (383)
T TIGR03540 62 RYPSYEGMLAYRQAVADWYKRRFGVELDPET---EVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIG------- 131 (383)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC---eEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHH-------
Confidence 45555566788877778887776663 332 38888998 466557788899999999998766554322
Q ss_pred ccceeeeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
+...|.++..+ +.+++ ...+|++++++.+.+ ++++|++ +++| +|.+.+ +++|.++|++||+++|+|+++.
T Consensus 132 -~~~~G~~v~~v--~~~~~~g~~~d~~~l~~~~~~-~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~ 207 (383)
T TIGR03540 132 -TLFAGGEPYEM--PLKEENGFLPDFDAIPEDIAK-KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYS 207 (383)
T ss_pred -HHhcCCEEEEE--ecCcccCCccCHHHHHhhccc-cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchh
Confidence 22334434444 44433 456899999999876 8999998 6888 898887 5788899999999999999986
Q ss_pred ccccc----ccCCCCC-CCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 172 SGLVA----AGVIPSP-FEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 172 ~g~~~----~~~~~~~-~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
--... ..+.... .....+++.|++|.++.|. -|+++.+++ +.+.+...... ...+.+.
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~--------------l~~~~~~~~~~-~~~~~~~ 272 (383)
T TIGR03540 208 EITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNAD--------------LIAGLGKVKTN-VDSGVFQ 272 (383)
T ss_pred hhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHH--------------HHHHHHHHHHh-cccCCCh
Confidence 32211 1111100 0023467789999873232 399987763 33333322111 1122233
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+...++..+++.. .. -++++++..++..+++.+.|++.
T Consensus 273 ~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~L~~~ 310 (383)
T TIGR03540 273 AIQYAAIAALNGP-QD-VVKEIRKIYQRRRDLLLEALKKI 310 (383)
T ss_pred HHHHHHHHHHhCC-HH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333444444321 11 34555666667777787777765
No 172
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=99.74 E-value=3e-16 Score=137.96 Aligned_cols=179 Identities=17% Similarity=0.194 Sum_probs=124.9
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
...|+.+.+..++.+..++++++++|. ++++ +|++|+|+ .+...++++++.+||+|++.++-+.+....
T Consensus 62 ~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~---eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~----- 133 (420)
T KOG0257|consen 62 TNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDD---EVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQ----- 133 (420)
T ss_pred hccccccCCchHHHHHHHHHHHHHhccccCCcc---cEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhH-----
Confidence 444444556677787777999998886 3332 49999999 566668999999999999998665555432
Q ss_pred ccccceeeeeeEeeecc-----cCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEE
Q 022463 96 TKKISAVSIFFETMPYR-----LNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIML 165 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~-----~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~li 165 (297)
+.+.|...+.++.. ....++.+|.++++.++++ +||+|++ +|+| +|.+.+ +++|+++|++||+++|
T Consensus 134 ---~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~-kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvi 209 (420)
T KOG0257|consen 134 ---VVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE-KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVI 209 (420)
T ss_pred ---HhhcCCcceeeccccccccccCccccCChHHHHhhccC-CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 33444444444433 0135789999999999998 9999999 6888 896654 6799999999999999
Q ss_pred EehhhhcccccccCCC----CCCC-CccEEEecCCccCCCCCc---eEEEEec
Q 022463 166 ADMAHISGLVAAGVIP----SPFE-YADVVTTTTHKSLRGPRG---AMIFFRK 210 (297)
Q Consensus 166 vD~a~~~g~~~~~~~~----~~~~-~~D~~~~s~~K~l~gp~g---G~i~~~~ 210 (297)
.|+++.--......+. .|.. ..-+-++|++|++ |..| |.++..+
T Consensus 210 sDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf-~~TGWrlGW~igp~ 261 (420)
T KOG0257|consen 210 SDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTF-GVTGWRLGWAIGPK 261 (420)
T ss_pred EhhHhHHHhhCCCcceeeecCCchhheEEEecccccee-eeeeeeeeeeechH
Confidence 9998532211111000 0111 2345678999986 5556 8888844
No 173
>PRK12414 putative aminotransferase; Provisional
Probab=99.73 E-value=2.4e-16 Score=144.05 Aligned_cols=233 Identities=12% Similarity=0.171 Sum_probs=146.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCCC--CCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+......++++.+.+++++++|++ +++ ++++|+|+ .++..++++++.+||+|+++..+|......
T Consensus 60 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~---~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~------ 130 (384)
T PRK12414 60 NQYAPMAGIAALREALAEKTERLYGARYDPAS---EVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPI------ 130 (384)
T ss_pred CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHH------
Confidence 345555667888888889999999985 321 38888887 466568888899999999998776554221
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcc---cHHHHHHHHHhcCCEEEEehhhh
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLY---DYERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~---~~~~i~~la~~~g~~livD~a~~ 171 (297)
+...|..+ ++++.+++++.+|++.+++.+++ ++++|++ +++| +|.+. ++++|.++|++||+++|+|+++.
T Consensus 131 --~~~~g~~~--~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~ 205 (384)
T PRK12414 131 --VRLQGATP--VAIKLSPEDFRVNWDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE 205 (384)
T ss_pred --HHHcCCEE--EEEecCccccccCHHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh
Confidence 22233334 33445544678999999999986 8999988 6877 88765 57788889999999999999976
Q ss_pred cccccc----cCCCCC-CCCccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 172 SGLVAA----GVIPSP-FEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 172 ~g~~~~----~~~~~~-~~~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
--.... .+...+ ..+--+++.|++|.++ |-+-|+++.+++ +.+.+...... ...+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~--------------l~~~l~~~~~~-~~~~~s~ 270 (384)
T PRK12414 206 HVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAE--------------LMDEIRKVHQF-MVFSADT 270 (384)
T ss_pred hccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHH--------------HHHHHHHHHhh-eecCCCc
Confidence 322111 111100 0112378899999773 333399998773 33333322110 1112233
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+...++..+| .+.....++++..++.++++.+.|++.
T Consensus 271 ~~q~a~~~~l---~~~~~~~~~~~~~~~~r~~l~~~L~~~ 307 (384)
T PRK12414 271 PMQHAFAEAL---AEPASYLGLGAFYQRKRDLLARELAGS 307 (384)
T ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333333 221123345555666677777777665
No 174
>PLN00175 aminotransferase family protein; Provisional
Probab=99.73 E-value=3.5e-16 Score=144.19 Aligned_cols=234 Identities=15% Similarity=0.101 Sum_probs=150.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+...+..++++.+.+++.+.+|. ++++ +|++|+|++ ++..++.++++|||+|+++++.|+....
T Consensus 85 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~---~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~------- 154 (413)
T PLN00175 85 NQYARGFGVPELNSAIAERFKKDTGLVVDPEK---EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA------- 154 (413)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHH-------
Confidence 45666677888998887888777675 4431 388999984 6666788889999999999866555432
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
.+...|.++..+ +.+++++.+|++.+++.+.+ ++++|++ +++| +|.+.+ +++|.++|++|++++|+|+++.
T Consensus 155 -~~~~~g~~~~~v--~~~~~~~~~~~~~l~~~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~ 230 (413)
T PLN00175 155 -TLSMAGAKIKTV--TLRPPDFAVPEDELKAAFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYD 230 (413)
T ss_pred -HHHHcCCEEEEE--ECCcccCCCCHHHHHHhcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccC
Confidence 223334334444 45544578999999999987 8999988 7888 897775 6678889999999999999975
Q ss_pred cccccccCC-CCCCC---CccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchH
Q 022463 172 SGLVAAGVI-PSPFE---YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNH 245 (297)
Q Consensus 172 ~g~~~~~~~-~~~~~---~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~ 245 (297)
......... ...+. .-.+++.|++|.++.| +-|+++.+++ +.+.+..... ....+.+.+
T Consensus 231 ~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~--------------l~~~l~~~~~-~~~~~~s~~ 295 (413)
T PLN00175 231 KLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH--------------LTWGVRQAHS-FLTFATATP 295 (413)
T ss_pred ccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHH--------------HHHHHHHHHh-hccCCCCHH
Confidence 433211100 00111 2347789999987433 3399998873 3333332211 111233444
Q ss_pred HHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 246 TITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 246 ~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
...++..+|+.- +. -+++.+++.++..+.+.+.|++.
T Consensus 296 ~Q~a~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~L~~~ 332 (413)
T PLN00175 296 MQWAAVAALRAP-ES-YYEELKRDYSAKKDILVEGLKEV 332 (413)
T ss_pred HHHHHHHHHhCC-HH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 444444555321 11 35566666777777777777765
No 175
>PLN02368 alanine transaminase
Probab=99.73 E-value=6.1e-16 Score=141.83 Aligned_cols=239 Identities=14% Similarity=0.080 Sum_probs=149.8
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhc-CCCCeEEEecCCCCCcccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
...|+...+..++++.+.+++.+..|. ++++ |++|+|++ +...++.+++ +|||+|+++...|+.....
T Consensus 100 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~---- 171 (407)
T PLN02368 100 LGAYSDSRGLPGVRKEVAEFIERRDGYPSDPEL----IFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSAT---- 171 (407)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----EEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHH----
Confidence 445777777888998887888777674 5554 99999995 6655777787 7999999998666555332
Q ss_pred cccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhc-----CCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCE
Q 022463 95 DTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLF-----RPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAI 163 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~-----~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~ 163 (297)
+...|..+..+ +.++ +++.+|++.+++.+++. +++++++ +++| +|.+.+. ++|.++|++||++
T Consensus 172 ----~~~~g~~~v~v--~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~ 245 (407)
T PLN02368 172 ----ISLLGGTLVPY--YLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLV 245 (407)
T ss_pred ----HHHcCCEEEEE--ecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 33344334344 4442 34789999999998741 5787777 7888 8977765 4677789999999
Q ss_pred EEEehhhhcccccccCCCCC-------C----C-C-ccEEEecCCccC---CCCCceEEEE---ecCchhhccCCccchh
Q 022463 164 MLADMAHISGLVAAGVIPSP-------F----E-Y-ADVVTTTTHKSL---RGPRGAMIFF---RKGVKEINKQGKEVFY 224 (297)
Q Consensus 164 livD~a~~~g~~~~~~~~~~-------~----~-~-~D~~~~s~~K~l---~gp~gG~i~~---~~~~~~~~~~g~~~~~ 224 (297)
||+|+++.--.........+ + . . -=+++.|++|.+ .|-+-|+++. ++
T Consensus 246 II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~-------------- 311 (407)
T PLN02368 246 LLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-------------- 311 (407)
T ss_pred EEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCH--------------
Confidence 99999864322111000000 0 0 1 125678999986 3555599985 33
Q ss_pred hHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh--h------hcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 225 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC--T------LITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 225 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~--~------~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
++.+.+..... ...+++.+...++.++|+.-. + .....++.+..++.++++.+.|++++++
T Consensus 312 ~li~~~~~~~~--~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~ 380 (407)
T PLN02368 312 KTVEEIYKVAS--IALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNV 380 (407)
T ss_pred HHHHHHHHHhc--ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 33443333211 112344455555555553110 0 0012335566677788888999888764
No 176
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.73 E-value=7.2e-17 Score=145.55 Aligned_cols=238 Identities=9% Similarity=0.008 Sum_probs=159.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc-CCCCeEEEecCCCCCcccccccccccccceeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
+...++-+++++.|.++++.+.+. .+.++.+|||.++.+++.+++ ++||.|++.. .++.... ...++..|.
T Consensus 35 ~~F~~i~~e~~~~L~~l~~~~~~~-~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-----~FG~r~~--~eia~~~g~ 106 (374)
T TIGR01365 35 KLGKEKLAEAIKKTREMLGVPADY-LIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-----SFGKGWV--TDVTKQLKL 106 (374)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc-EEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-----HHHHHHH--HHHHHhcCC
Confidence 444566667889999999985332 133444666678888999998 5899888742 2221111 011112232
Q ss_pred -eeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 105 -FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 105 -~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
.+..+..+ ....+|+++++. +..+.+. +.+.+|...|+++|.+.+ ++++++||+..++|..++++.
T Consensus 107 ~~v~~l~~~---~g~~~~~~~ve~-----~~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d-- 174 (374)
T TIGR01365 107 PDVRVLEAE---YGKLPDLKKVDF-----KNDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH-- 174 (374)
T ss_pred CCcEEEcCC---CCCCCCHHHcCC-----CCCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh--
Confidence 13333322 345788998872 2234444 588899999997666432 589999999999999988765
Q ss_pred CCCCccEEEecCCccCCCCCc-eEEEEecCchhhccC-Cc-cchhhHHHH-h-----hhcccCCCCCCCchHHHHHHHHH
Q 022463 183 PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ-GK-EVFYDYEEK-I-----NQAVFPGLQGGPHNHTITGLAVA 253 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~-g~-~~~~~~~~~-~-----~~~~~~~~~~t~~~~~~~al~~a 253 (297)
++|++.+|++|+|++|+| +++++++++..+... +. ..+..+.+. . ..........||++..+.++..+
T Consensus 175 ---~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~ 251 (374)
T TIGR01365 175 ---KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDA 251 (374)
T ss_pred ---HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHH
Confidence 479999999999999999 999999986433111 10 000011110 0 00011123568888888998899
Q ss_pred HHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 254 LKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 254 l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
|+.+++++|++.+.++++.+++.+++.++++.+
T Consensus 252 l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~ 284 (374)
T TIGR01365 252 LKWAESIGGLKPLIARADDNLAVLEAFVAKNNW 284 (374)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 988887658999999999999999999999884
No 177
>PLN02187 rooty/superroot1
Probab=99.73 E-value=4.8e-16 Score=144.99 Aligned_cols=240 Identities=12% Similarity=0.071 Sum_probs=148.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.++ +++++ |++|+|++ +...++.++++|||+|+++.++|+....
T Consensus 103 ~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~----I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~-------- 170 (462)
T PLN02187 103 SYGPGAGILPARRAVADYMNRDLPHKLTPED----IFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDA-------- 170 (462)
T ss_pred CCCCCCChHHHHHHHHHHHHHhcCCCCCccc----EEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHH--------
Confidence 344456677888766676665544 46654 99999984 6666888889999999999876665422
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
.+...|..++.++...+ +++.+|++++++++++ +++++++ +|+| +|.+.+ +++|.++|++||+++|+|+++.-
T Consensus 171 ~~~~~g~~~~~~~l~~~-~~~~~d~~~l~~~~~~-~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~ 248 (462)
T PLN02187 171 RAAYSGLEVRKFDLLPE-KEWEIDLEGIEAIADE-NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDR 248 (462)
T ss_pred HHHHcCCEEEEEeCccc-cCCccCHHHHHHhcCC-CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 12333444544543212 4678999999999876 7888877 7888 898877 66888889999999999999753
Q ss_pred ccccccCCCCCCC---C--ccEEEecCCccCCCCCc--eEEEEecC-chhhccCCccchhhHHHHhhhcccC-CCCCCCc
Q 022463 173 GLVAAGVIPSPFE---Y--ADVVTTTTHKSLRGPRG--AMIFFRKG-VKEINKQGKEVFYDYEEKINQAVFP-GLQGGPH 243 (297)
Q Consensus 173 g~~~~~~~~~~~~---~--~D~~~~s~~K~l~gp~g--G~i~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~t~~ 243 (297)
-... +....++. . -=+++.|++|.+..|.- |++++.++ ... +..+.+...... .....++
T Consensus 249 l~f~-~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~----------~~~~~~~~~~~~~~~~~~~s 317 (462)
T PLN02187 249 TIFG-DNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVF----------ETTKVLQSIKQNLDVTPDPA 317 (462)
T ss_pred cccC-CCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHH----------HHHHHHHHHHHhccccCCCC
Confidence 2211 10000111 1 12567899998644433 99998432 100 011222222111 1122345
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
.+...++.++|+.-... -+++.++..++..+++.+.|++++.
T Consensus 318 ~~~Q~a~~~~L~~~~~~-~l~~~~~~l~~~r~~l~~~L~~~~~ 359 (462)
T PLN02187 318 TIIQAALPAILEKADKN-FFAKKNKILKHNVDLVCDRLKDIPC 359 (462)
T ss_pred HHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 55556666665421112 4566667777777888888887654
No 178
>PRK07049 methionine gamma-lyase; Validated
Probab=99.73 E-value=2.3e-16 Score=145.49 Aligned_cols=220 Identities=15% Similarity=0.115 Sum_probs=145.4
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccc-cccccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ-TDTKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~~~~~~ 102 (297)
+++....+| +.++++.|.+. .+++++|++++..++.+++++||.|+++...|+.+...... +...++
T Consensus 81 ~~Pt~~~Le----~~lA~leg~~~-----~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi--- 148 (427)
T PRK07049 81 NHPNSEIVE----DRLAVYEGAES-----AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV--- 148 (427)
T ss_pred CCcCHHHHH----HHHHHHhCCCc-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc---
Confidence 346667888 89999999764 37888888887778889999999999988666665332111 111122
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhh----cCCcEEEE-cCCC-CCCcccHHHHHHHHHh------cCCEEEEehhh
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATL----FRPKLIVA-GASA-YARLYDYERIRKVCNK------QKAIMLADMAH 170 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~----~~~~~v~~-~~~~-~G~~~~~~~i~~la~~------~g~~livD~a~ 170 (297)
+.+.++ + ..|++.+++.+.+ .++++|++ +++| +|.+.|+++|.++++. +++++++|++.
T Consensus 149 ----~~v~~~-~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety 219 (427)
T PRK07049 149 ----GAVGFA-D----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTL 219 (427)
T ss_pred ----EEEEEe-C----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCc
Confidence 222222 1 2467778777752 36899999 7888 8999999999999988 89999999985
Q ss_pred hcccccccCCCCCCC-CccEEEecCCccCCCC---CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHH
Q 022463 171 ISGLVAAGVIPSPFE-YADVVTTTTHKSLRGP---RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHT 246 (297)
Q Consensus 171 ~~g~~~~~~~~~~~~-~~D~~~~s~~K~l~gp---~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~ 246 (297)
...... .|+. ++|+++.|++|+++|. ++|+++.++ ++.+.+.....+. .+..+...
T Consensus 220 ~~~~~~-----~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~--------------~l~~~l~~~~~~~-g~~ls~~~ 279 (427)
T PRK07049 220 LGPVFQ-----KPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRK--------------ALIRQVRALRSAI-GTQLDPHS 279 (427)
T ss_pred cccccC-----CccccCCCEEEEcCceeecCCCCcEEEEEECCH--------------HHHHHHHHHHHhc-CCCCCHHH
Confidence 433221 1222 7899999999999864 448888666 3334333222111 22334444
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
.+.+..+++. +....++..+.+..+.+.|++.|.|+.+
T Consensus 280 a~l~~r~L~t------l~~R~~~~~~~a~~la~~L~~~p~V~~v 317 (427)
T PRK07049 280 CWMLGRSLET------LVLRMERANRNARAVAEFLRDHPKVEKL 317 (427)
T ss_pred HHHHHcCCCh------HHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 4444444432 3334455567778888888888888765
No 179
>PRK09082 methionine aminotransferase; Validated
Probab=99.72 E-value=2.2e-16 Score=144.37 Aligned_cols=233 Identities=11% Similarity=0.071 Sum_probs=148.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCCC--CCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLDP--EKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~~--~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.++.+. ++ ++++|+|+ .++..++.+++.+||+|+++...|.+.....
T Consensus 62 ~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~---~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~------ 132 (386)
T PRK09082 62 QYPPMTGVAALREAIAAKTARLYGRQYDADS---EITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAI------ 132 (386)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHH------
Confidence 345556677888888889988888753 21 38888887 4666678888999999999987777654322
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCc---ccHHHHHHHHHhcCCEEEEehhhhc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARL---YDYERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~---~~~~~i~~la~~~g~~livD~a~~~ 172 (297)
+..|..+ ++++.+.+++.+|++++++.+++ +++++++ +++| +|.+ .++++|.++|++||+++|+|+++.-
T Consensus 133 --~~~g~~~--~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~ 207 (386)
T PRK09082 133 --ELAGGRA--VRVALQPPDFRVDWQRFAAAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEH 207 (386)
T ss_pred --HHcCCEE--EEEecCcccccCCHHHHHHhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhh
Confidence 2233334 33445545678999999999987 8999988 6777 7865 5677899999999999999999753
Q ss_pred ccccccCCCCC--C---CCccEEEecCCccCCC--CCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchH
Q 022463 173 GLVAAGVIPSP--F---EYADVVTTTTHKSLRG--PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNH 245 (297)
Q Consensus 173 g~~~~~~~~~~--~---~~~D~~~~s~~K~l~g--p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~ 245 (297)
........... + ..-.+++.|++|.++. .+-|+++.+++ +.+.+....... ..+.+.+
T Consensus 208 ~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~--------------l~~~~~~~~~~~-~~~~~~~ 272 (386)
T PRK09082 208 IVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAA--------------LSAEFRKVHQYN-TFTVNTP 272 (386)
T ss_pred hccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHH--------------HHHHHHHHHhhh-cCCCChH
Confidence 22211101100 0 1234788899998743 33399998763 333333321111 1123333
Q ss_pred HHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 246 TITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 246 ~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
...++...++. .+. .++++++..++..+++.+.|++.
T Consensus 273 ~q~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~L~~~ 309 (386)
T PRK09082 273 AQLALADYLRA-EPE-HYLELPAFYQAKRDRFRAALANS 309 (386)
T ss_pred HHHHHHHHHhC-ChH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 43333333321 112 35556666677777788877763
No 180
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.72 E-value=1e-15 Score=143.83 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=120.2
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhc-CCCCeEEEecCCCCCcccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
...|+......++++.+.+++.+..|. +++ +|++|+|++ +...++++++ +|||+|+++.+.|+....
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~----~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~----- 178 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDGVPKDPS----DIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSA----- 178 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcCCCCChh----hEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHH-----
Confidence 355777778889998887888776564 454 499999995 6655777887 799999999866655533
Q ss_pred cccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhc-----CCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCE
Q 022463 95 DTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLF-----RPKLIVA-GASA-YARLYD---YERIRKVCNKQKAI 163 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~-----~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~ 163 (297)
.++..|..+..+ +.++ .++.+|++.+++.+++. +++++++ +++| +|.+.+ +++|.++|++|+++
T Consensus 179 ---~~~~~g~~~v~v--~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~ 253 (481)
T PTZ00377 179 ---AITLLGGKQVPY--YLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIV 253 (481)
T ss_pred ---HHHHcCCEEEEE--EeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCE
Confidence 233344334444 4443 34689999999998742 6888777 7888 898887 67888999999999
Q ss_pred EEEehhhhcccccccCCCCC-------CC-C----cc-EEEecCCccCC---CCCceEEEE
Q 022463 164 MLADMAHISGLVAAGVIPSP-------FE-Y----AD-VVTTTTHKSLR---GPRGAMIFF 208 (297)
Q Consensus 164 livD~a~~~g~~~~~~~~~~-------~~-~----~D-~~~~s~~K~l~---gp~gG~i~~ 208 (297)
+|+|+++.--....+....+ +. . .. +++.|++|.+. |-+.|++++
T Consensus 254 iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~ 314 (481)
T PTZ00377 254 LMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFEL 314 (481)
T ss_pred EEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEE
Confidence 99999975321111100000 00 0 01 45679999754 555599887
No 181
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.72 E-value=1.7e-16 Score=142.97 Aligned_cols=216 Identities=13% Similarity=0.088 Sum_probs=142.6
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeeccc
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 113 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 113 (297)
.|+.+++++++++++ +++++|++ ++..++.+++++||+|+++..+|+.+.. .+...|.++.. ++.
T Consensus 59 lr~~ia~~~~~~~~~----i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~--------~~~~~g~~~~~--~~~ 124 (346)
T TIGR01141 59 LKQALADYYGVDPEQ----ILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEI--------SAKIHGAEVVK--VPL 124 (346)
T ss_pred HHHHHHHHhCcChHH----EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHH--------HHHHcCCeEEE--ecc
Confidence 338889999987764 88999985 5555777888999999998865432211 12223433433 445
Q ss_pred CCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc--CCEEEEehhhhcccccccCCCCC-C--CC
Q 022463 114 NESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSP-F--EY 186 (297)
Q Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~--g~~livD~a~~~g~~~~~~~~~~-~--~~ 186 (297)
+ .++.+|++++++.+.+ ++++|++ +++| +|...|++++.++|+.+ ++++|+|++++. ....+ ...+ . ..
T Consensus 125 ~-~~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~-~~~~~-~~~~~~~~~~ 200 (346)
T TIGR01141 125 D-EDGQLDLEDILVAIDD-KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGE-FSGEP-STLPLLAEYP 200 (346)
T ss_pred C-CCCCCCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhh-hcCCc-cHHHHHhhCC
Confidence 5 3477999999998876 8999988 6777 89999999999999887 999999999762 21110 0000 0 02
Q ss_pred ccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChh
Q 022463 187 ADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFS 264 (297)
Q Consensus 187 ~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~ 264 (297)
.++++.|++|+++.| +-|+++.++ ++.+.+.....+ .+.+.+...++ +..+.....++
T Consensus 201 ~~i~~~S~sK~~g~~G~r~G~~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~---~~~l~~~~~~~ 260 (346)
T TIGR01141 201 NLIVLRTLSKAFGLAGLRIGYAIANA--------------EIIDALNKVRAP---FNLSRLAQAAA---IAALRDDDFIE 260 (346)
T ss_pred CEEEEehhhHhhhchhhhceeeecCH--------------HHHHHHHhccCC---CCCCHHHHHHH---HHHhCCHHHHH
Confidence 346678999998433 339999877 344444432211 12233444443 33343331367
Q ss_pred hHHHHhhhhHHHHHhhccCCCCcc
Q 022463 265 HIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 265 ~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+.+++.+++++++.+.|++.+.++
T Consensus 261 ~~~~~~~~~~~~l~~~L~~~~g~~ 284 (346)
T TIGR01141 261 KTVEEINAERERLYDGLKKLPGLE 284 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCE
Confidence 788888889999999998876554
No 182
>PRK08912 hypothetical protein; Provisional
Probab=99.72 E-value=6.8e-16 Score=141.21 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=147.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+......++++.+.+++.+.+|. ++++ +|++|+|++ +...++.+++++||+|+++.+.|+.....
T Consensus 57 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~---~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~------ 127 (387)
T PRK08912 57 NQYPPMMGLPELRQAVAAHYARFQGLDLDPET---EVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPL------ 127 (387)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcc---cEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHH------
Confidence 34666666788887777787776665 4541 388988884 66567788899999999998776655332
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
+...|..+..+ +.+++++.+|++.+++.+.+ +++++++ +++| +|.+.+ +++|.++|++|++++|+|+++.
T Consensus 128 --~~~~g~~~~~~--~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~ 202 (387)
T PRK08912 128 --IRRAGGVPRLV--RLEPPHWRLPRAALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWE 202 (387)
T ss_pred --HHHcCCEEEEE--ecCcccCcCCHHHHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhh
Confidence 22334334344 45434678999999999987 8898888 7888 898876 5678899999999999999975
Q ss_pred cccccc----cCCCCC-CCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 172 SGLVAA----GVIPSP-FEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 172 ~g~~~~----~~~~~~-~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
...... .+...+ ....++++.|++|.++-|. -|+++++++ +.+.+........ .+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~--------------~~~~l~~~~~~~~-~~~~~ 267 (387)
T PRK08912 203 HVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPP--------------LLRVLAKAHQFLT-FTTPP 267 (387)
T ss_pred hcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHH--------------HHHHHHHHHhhcc-ccCCh
Confidence 322111 000000 0134688999999763222 399998773 3333332211111 11222
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
....++..++... +. -+++.+++.++..+++.+.|+..
T Consensus 268 ~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~L~~~ 305 (387)
T PRK08912 268 NLQAAVAYGLGKP-DD-YFEGMRADLARSRDRLAAGLRRI 305 (387)
T ss_pred HHHHHHHHHHhCC-HH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 2333334444211 11 24556666777777777777765
No 183
>PRK07777 aminotransferase; Validated
Probab=99.72 E-value=6.4e-16 Score=141.37 Aligned_cols=234 Identities=11% Similarity=0.054 Sum_probs=145.2
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCCC--CCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+......++++.+.+++.+.+|.+ +++ +|++|+|++ ++..++.+++++||+|+++...|+.....
T Consensus 55 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~---~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~------ 125 (387)
T PRK07777 55 NQYPPGPGIPELRAAIAAQRRRRYGLEYDPDT---EVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAV------ 125 (387)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHH------
Confidence 346555667888877777777777764 331 388888874 66667888899999999988766554322
Q ss_pred cccceeeeeeEeeecccCC--CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehh
Q 022463 97 KKISAVSIFFETMPYRLNE--STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~--~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a 169 (297)
+...|..+..+ +.++ .++.+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|+++++++|+|++
T Consensus 126 --~~~~g~~~~~~--~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~ 200 (387)
T PRK07777 126 --IAMAGAHRVPV--PLVPDGRGFALDLDALRAAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEV 200 (387)
T ss_pred --HHHCCCEEEEe--ecCCccCCCcCCHHHHHHhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEecc
Confidence 22233334334 4442 2467999999999987 8999988 6777 787654 77889999999999999999
Q ss_pred hhcccccc----cCCCCC-CCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCC
Q 022463 170 HISGLVAA----GVIPSP-FEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGP 242 (297)
Q Consensus 170 ~~~g~~~~----~~~~~~-~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~ 242 (297)
+....... .+...+ ..+.++++.|++|.++.|. -|+++.+++ +.+.+....... ....
T Consensus 201 y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~--------------l~~~~~~~~~~~-~~~~ 265 (387)
T PRK07777 201 YEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAP--------------LIAAVRAAKQYL-TYVG 265 (387)
T ss_pred chhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHH--------------HHHHHHHHHhhc-ccCC
Confidence 75322111 111111 1145788999999885342 288887773 333332211100 0111
Q ss_pred chHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 243 HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 243 ~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+.+...++..+++.- +. -++++++..++..+++.+.|++.
T Consensus 266 ~~~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~L~~~ 305 (387)
T PRK07777 266 GAPFQPAVAHALDHE-DA-WVAALRDSLQAKRDRLAAGLAEA 305 (387)
T ss_pred CCHHHHHHHHHHhCC-cH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 222222333333221 11 34556666777777777777764
No 184
>PRK08960 hypothetical protein; Provisional
Probab=99.72 E-value=6.7e-16 Score=141.26 Aligned_cols=232 Identities=9% Similarity=0.004 Sum_probs=141.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 98 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~ 98 (297)
|.......++++.+.+++.+.+| +++++ |++|+|++ +...++.++++|||+|++++++|+++.....
T Consensus 65 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~------ 134 (387)
T PRK08960 65 YTAARGLPALREAIAGFYAQRYGVDVDPER----ILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLR------ 134 (387)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCChhh----EEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH------
Confidence 44445667888666666665555 45654 99999984 6555778889999999999988877754332
Q ss_pred cceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHH---HHHHHHHhcCCEEEEehhhhcc
Q 022463 99 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYE---RIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 99 ~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~---~i~~la~~~g~~livD~a~~~g 173 (297)
..|..+..++++.+ .++.+|++.+++.+++ +++++++ +++| +|.+.+.+ +|.++|++||+++|+|+++.-
T Consensus 135 --~~g~~~~~v~~~~~-~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~- 209 (387)
T PRK08960 135 --LVEGAAQLVPVGPD-SRYQLTPALVERHWNA-DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHG- 209 (387)
T ss_pred --hcCCeEEEEecCcc-cCCCCCHHHHHHHhCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-
Confidence 22333444543322 2467999999999887 7887777 7888 89887755 666778999999999998642
Q ss_pred cccccCCCCCCC--Ccc-EEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHH
Q 022463 174 LVAAGVIPSPFE--YAD-VVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTIT 248 (297)
Q Consensus 174 ~~~~~~~~~~~~--~~D-~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 248 (297)
... +....++. ..+ +++.|++|.++.| +.|+++++++ +.+.+....... ..+.+.+...
T Consensus 210 ~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~--------------~~~~~~~~~~~~-~~~~s~~~q~ 273 (387)
T PRK08960 210 LTY-GVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPA--------------AVPELEKLAQNL-YISASTPAQH 273 (387)
T ss_pred ccc-CCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHH--------------HHHHHHHHHhhh-ccCCCHHHHH
Confidence 211 11111111 123 6778999977433 3499998873 333333221111 1122333333
Q ss_pred HHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 249 GLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 249 al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
++.++++.-... .+++.++..++..+.+.+.|++.+
T Consensus 274 a~~~~l~~~~~~-~l~~~~~~~~~~~~~l~~~L~~~~ 309 (387)
T PRK08960 274 AALACFEPETLA-ILEARRAEFARRRDFLLPALRELG 309 (387)
T ss_pred HHHHHhhcCcHH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444311111 344455556666777777776653
No 185
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.72 E-value=3e-16 Score=140.76 Aligned_cols=221 Identities=17% Similarity=0.086 Sum_probs=147.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccccc-cccccee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD-TKKISAV 102 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (297)
+++..+.+| +.++++-|.+. .+.+.||.++...++.+++++||+|+++...|++.+....... +.+++
T Consensus 61 ~nPT~~~lE----~~~a~LEg~~~-----~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~-- 129 (396)
T COG0626 61 GNPTRDALE----EALAELEGGED-----AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE-- 129 (396)
T ss_pred CCccHHHHH----HHHHHhhCCCc-----EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeE--
Confidence 578889999 89999998876 3999999988777889999999999999877777766554332 22322
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
... ++ ..|.+.+++++.+.+|++|++ +|+| +-.+.|+.+|.++|+++|+.++||.+.+.+..-
T Consensus 130 -----~~~--~d----~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q---- 194 (396)
T COG0626 130 -----VTF--VD----PGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ---- 194 (396)
T ss_pred -----EEE--EC----CCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc----
Confidence 222 22 224556666666348999999 8999 679999999999999999999999996655433
Q ss_pred CCCCC-CccEEEecCCccCCCCCc---eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 022463 181 PSPFE-YADVVTTTTHKSLRGPRG---AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 256 (297)
Q Consensus 181 ~~~~~-~~D~~~~s~~K~l~gp~g---G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~ 256 (297)
.|+. |+|+++.|..|+++|-.. |+++.+++ ...+.+............+....+-+..+++.
T Consensus 195 -~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~-------------~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT 260 (396)
T COG0626 195 -RPLELGADIVVHSATKYLGGHSDVLGGVVLTPNE-------------ELYELLFFAQRANTGAVLSPFDAWLLLRGLRT 260 (396)
T ss_pred -ChhhcCCCEEEEeccccccCCcceeeeEEecChH-------------HHHHHHHHHHHhhcCCCCCHHHHHHHHhccch
Confidence 2333 899999999999988333 65655553 23332211111111112222333344444443
Q ss_pred HhhhcChhhHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 257 VCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 257 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
+ ..+-+++.+.+..+.+-|++.|.|+++
T Consensus 261 L------~~Rm~~~~~nA~~IA~~L~~~p~V~~V 288 (396)
T COG0626 261 L------ALRMERHNENALKIAEFLADHPKVKKV 288 (396)
T ss_pred H------HHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3 334444555566666666677877753
No 186
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.72 E-value=1.3e-15 Score=139.21 Aligned_cols=235 Identities=12% Similarity=0.025 Sum_probs=147.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+...+...+++.+.+++.+.+| +++++ |++|+|++ +...++.+++++||+|+++...|......
T Consensus 60 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~----i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~------ 129 (384)
T PRK06348 60 TRYTDSGGDVELIEEIIKYYSKNYDLSFKRNE----IMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQ------ 129 (384)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCChhh----EEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHH------
Confidence 4466666677888777777766554 45654 99999995 66568888899999999998666554332
Q ss_pred cccceeeeeeEeeecccC-CCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhh
Q 022463 97 KKISAVSIFFETMPYRLN-ESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~-~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~ 170 (297)
+...|..+ ++++.+ .+++.+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|+++++++|+|+++
T Consensus 130 --~~~~g~~~--~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y 204 (384)
T PRK06348 130 --IEMVGGKP--IILETYEEDGFQINVKKLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVY 204 (384)
T ss_pred --HHHcCCEE--EEecCCcCcCCcCCHHHHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEeccc
Confidence 22333333 333432 24567999999999876 8899988 7888 887776 568888899999999999996
Q ss_pred hcccccccCCC-CCCC---CccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 171 ISGLVAAGVIP-SPFE---YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 171 ~~g~~~~~~~~-~~~~---~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
.--........ ..+. .-.+++.|++|.++ |-+-|+++++++ +.+.+....... ..+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~--------------~~~~~~~~~~~~-~~~~~~ 269 (384)
T PRK06348 205 DGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDY--------------IIETAKIINEGI-CFSAPT 269 (384)
T ss_pred ccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHH--------------HHHHHHHHHHhc-cCCCCH
Confidence 53221111000 0011 23477889999874 444599998763 344333221111 112233
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+...++..+++.. +. -.+++++..++..+++.+.|++.+.
T Consensus 270 ~~q~~~~~~l~~~-~~-~~~~~~~~~~~r~~~~~~~L~~~~~ 309 (384)
T PRK06348 270 ISQRAAIYALKHR-DT-IVPLIKEEFQKRLEYAYKRIESIPN 309 (384)
T ss_pred HHHHHHHHHHhCc-HH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444444445321 11 2445566666666777777776654
No 187
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.71 E-value=9.9e-16 Score=140.05 Aligned_cols=233 Identities=15% Similarity=0.066 Sum_probs=144.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+|. ++++ .|++|+|++ +...++..+++|||.|+++++.++....
T Consensus 64 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~-------- 132 (385)
T PRK09276 64 QYPSYEGMLEFRKAVADWYKRRFGVELDPET---EVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKI-------- 132 (385)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHH--------
Confidence 4555556678887777777766665 4432 388889984 6555778889999999999866544322
Q ss_pred ccceeeeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~a~~ 171 (297)
.++..|..+..++ .+.+ ++.+|++.+++.+.+ ++++|++ +++| +|.+.+. ++|.++|++||+++|+|+++.
T Consensus 133 ~~~~~g~~~~~v~--~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~ 209 (385)
T PRK09276 133 GTIFAGGEPYFMP--LKEENGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYS 209 (385)
T ss_pred HHHHcCCEEEEEe--cCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchh
Confidence 1223343344444 4422 466899999998876 8999998 6888 8988775 688888999999999999976
Q ss_pred ccccc----ccCCCCC-CCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 172 SGLVA----AGVIPSP-FEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 172 ~g~~~----~~~~~~~-~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
..... ..+...+ .....+++.|++|.++.|. -|+++.+++ +.+.+...... ...+.+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~--------------l~~~~~~~~~~-~~~~~~~ 274 (385)
T PRK09276 210 EIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNAD--------------LIAGLGKVKSN-VDSGVFQ 274 (385)
T ss_pred heecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHH--------------HHHHHHHHHhh-ccCCCCH
Confidence 43221 0111000 0123467889999773332 399998773 33333322111 1122233
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+...++..+++.. +. .+++++++.++..+++.+.|++.
T Consensus 275 ~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~L~~~ 312 (385)
T PRK09276 275 AIQEAGIAALNGP-QE-VVEELRKIYQERRDILVEGLRKL 312 (385)
T ss_pred HHHHHHHHHHcCc-HH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333334444321 12 34666667777778888888775
No 188
>PRK08363 alanine aminotransferase; Validated
Probab=99.71 E-value=5.8e-16 Score=142.18 Aligned_cols=237 Identities=15% Similarity=0.116 Sum_probs=144.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+| +++++ |++|+|++ ++..++.+++++||.|+++..+|.......
T Consensus 65 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~------ 134 (398)
T PRK08363 65 YYGPSEGLPELREAIVKREKRKNGVDITPDD----VRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLV------ 134 (398)
T ss_pred CCCCCCCcHHHHHHHHHHHHHhcCCCCChhh----EEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH------
Confidence 455556678888666666655545 45554 99999984 666678888999999999987766654322
Q ss_pred ccceeeeeeEeeec-ccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPY-RLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~-~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
...|... +.+ +.+++++.+|++++++.+++ +++++++ +++| +|.+.+ +++|.++|+++|+++|+|+++.
T Consensus 135 --~~~g~~~--v~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~ 209 (398)
T PRK08363 135 --KFYGGVP--VEYRTIEEEGWQPDIDDIRKKITE-KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYD 209 (398)
T ss_pred --HHcCCEE--EEeccccccCCcCCHHHHHhhCCc-ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhh
Confidence 2222222 323 34434567899999999987 8898888 7888 898777 7889999999999999999975
Q ss_pred cccccccCCC-CCCCCc--cEEEecCCccCCCCC--ceEEEE-ecCchhhccCCccchhhHHHHhhhccc--CCCCCCCc
Q 022463 172 SGLVAAGVIP-SPFEYA--DVVTTTTHKSLRGPR--GAMIFF-RKGVKEINKQGKEVFYDYEEKINQAVF--PGLQGGPH 243 (297)
Q Consensus 172 ~g~~~~~~~~-~~~~~~--D~~~~s~~K~l~gp~--gG~i~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~t~~ 243 (297)
.-........ ..+... =+++.|++|+++.|. -|++++ +++ ...+.+..... .....+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~s 276 (398)
T PRK08363 210 LMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPE-------------GKLAEVREAIDKLARIRLCPN 276 (398)
T ss_pred hhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcH-------------HHHHHHHHHHHHHhcccccCC
Confidence 3221110000 001111 255789999854433 399987 232 11111111100 00011223
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
.+...++..+|... .. .+++.+++.++..+++.+.|++.+.+
T Consensus 277 ~~~q~~~~~~l~~~-~~-~l~~~~~~~~~~~~~l~~~L~~~~~~ 318 (398)
T PRK08363 277 TPAQFAAIAGLTGP-MD-YLEEYMKKLKERRDYIYKRLNEIPGI 318 (398)
T ss_pred hHHHHHHHHHHhCC-hH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444444444321 12 45556667777778888888776554
No 189
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.71 E-value=1e-15 Score=145.03 Aligned_cols=249 Identities=17% Similarity=0.116 Sum_probs=161.8
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cC-------C----------------
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LK-------P---------------- 73 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~-------~---------------- 73 (297)
...+..++....+|+++-+++++++|.+.. | .++++.||.+|+.++... .+ .
T Consensus 112 ~~~~e~SP~~t~lE~~vi~~la~l~G~~~~-~--G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n 188 (608)
T TIGR03811 112 NVAYESSPATSQMEEEVGKEFATLMGYKNG-W--GHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLN 188 (608)
T ss_pred CCccccCchHHHHHHHHHHHHHHHhCCCCC-C--eEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcc
Confidence 344456678899999999999999999764 3 466666666777543322 10 0
Q ss_pred ---------------------------CC------eEEEecCCCCCcccccccccccccceeeeee-EeeecccCCCCCc
Q 022463 74 ---------------------------HD------RIMALDLPHGGHLSHGYQTDTKKISAVSIFF-ETMPYRLNESTGY 119 (297)
Q Consensus 74 ---------------------------gd------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~~~~~~~ 119 (297)
|. .++++...|.|..... .+.|... ..+.+++| ++++
T Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa--------~ilGlG~~~vv~VpvD-~~~r 259 (608)
T TIGR03811 189 MPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAA--------DIIGIGLDQVIPVPVD-SNYR 259 (608)
T ss_pred cccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHH--------HHcCCCcccEEEeecC-CCCc
Confidence 00 4666666677765433 3333321 12344566 6789
Q ss_pred CCHHHHHHHhhhc----CCc-EEEE--cCCCCCCcccHHHHHHHH---HhcCC--EEEEehhhhccc--cccc-------
Q 022463 120 IDYDQLEKSATLF----RPK-LIVA--GASAYARLYDYERIRKVC---NKQKA--IMLADMAHISGL--VAAG------- 178 (297)
Q Consensus 120 ~d~~~l~~~l~~~----~~~-~v~~--~~~~~G~~~~~~~i~~la---~~~g~--~livD~a~~~g~--~~~~------- 178 (297)
+|++.|++.|.+. .+- +|+. +.+.+|.+.|+++|.++| +++|+ ++|||+|++.-. +..+
T Consensus 260 md~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p 339 (608)
T TIGR03811 260 MDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIP 339 (608)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccc
Confidence 9999999998641 233 3333 466689999999999999 67888 699999976532 1111
Q ss_pred -------------CC-------C------CCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhh
Q 022463 179 -------------VI-------P------SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKIN 231 (297)
Q Consensus 179 -------------~~-------~------~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~ 231 (297)
+. + .-+..+|.++.++|||+..|.+ |++++++....... .... .|... .
T Consensus 340 ~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~-~~~a--~Yl~~-~ 415 (608)
T TIGR03811 340 YDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVI-SYFA--TYVFE-K 415 (608)
T ss_pred cchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHH-hcCc--chhcc-c
Confidence 00 0 0023799999999999999999 98998886211100 0000 11100 0
Q ss_pred hcccC------CCCCCCchHHHHHHHHHHHHH--hhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 232 QAVFP------GLQGGPHNHTITGLAVALKQV--CTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 232 ~~~~~------~~~~t~~~~~~~al~~al~~~--~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
....| ...++.+....++++.+++.+ ... |+.++.++...+++++.+.|++.
T Consensus 416 ~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~-Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 416 GADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVT-GYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred cccCcccccccceecCCccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 00011 124555556677888999998 666 99999999999999999999885
No 190
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.71 E-value=1.3e-15 Score=140.10 Aligned_cols=231 Identities=14% Similarity=0.014 Sum_probs=144.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCC---CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRL---DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~---~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
.|+. .....+++.+.+++.+.+|. ++++ +|++|+|++ +...++.+++++||.|+++.+.|+.....
T Consensus 77 ~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~---~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~------ 146 (410)
T PRK06290 77 GYAD-NGIQEFKEAAARYMEKVFGVKDIDPVT---EVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTH------ 146 (410)
T ss_pred CCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcc---eEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHH------
Confidence 3443 56688887777777776664 3432 399999994 66557788899999999998665544221
Q ss_pred cccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEehhh
Q 022463 97 KKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~a~ 170 (297)
+...|.++..+ +.++ .++.+|++++++.+.+ ++++|++ +++| +|.+.+. ++|.++|++||++||+|+++
T Consensus 147 --~~~~g~~v~~v--~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY 221 (410)
T PRK06290 147 --TKYYGGEVYNL--PLLEENNFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAY 221 (410)
T ss_pred --HHHcCCEEEEE--ecCCCcCCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecch
Confidence 22334334444 4543 3467899999999876 8999999 6888 8988875 67778899999999999997
Q ss_pred hcccccccC-CCCCC---CCccEEEecCCccCCC--CCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 171 ISGLVAAGV-IPSPF---EYADVVTTTTHKSLRG--PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 171 ~~g~~~~~~-~~~~~---~~~D~~~~s~~K~l~g--p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
......... ....+ ...++++.|++|.++. -+-|+++.+++ +.+.+....... ..+.+.
T Consensus 222 ~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~--------------l~~~l~~~~~~~-~~~~~~ 286 (410)
T PRK06290 222 AALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNEL--------------IVKAFATVKDNN-DSGQFI 286 (410)
T ss_pred hhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHH--------------HHHHHHHHHhcc-ccCCcH
Confidence 643221100 00001 1346889999998733 33399998763 344443322111 112222
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+...++..++ .+..-.++.+++.++..+++.+.|+++
T Consensus 287 ~~q~aa~~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~ 323 (410)
T PRK06290 287 AIQKAGIYAL---DHPEITEKIREKYSRRLDKLVKILNEV 323 (410)
T ss_pred HHHHHHHHHh---hCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333333 222124556666667777777777765
No 191
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.71 E-value=6.7e-16 Score=139.43 Aligned_cols=218 Identities=13% Similarity=0.112 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..+++ +.+++++++++++ |++++|++ +...++.+++++||+|+++.+.+..... .+...|.++
T Consensus 61 ~~~lr----~~ia~~~~~~~~~----i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~ 124 (351)
T PRK14807 61 AEKLR----EELARYCSVVPTN----IFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSV--------YSKIAGAVE 124 (351)
T ss_pred HHHHH----HHHHHHhCCCccc----EEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHHcCCeE
Confidence 35566 8888889998764 99999995 5555777889999999998755443211 122334334
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 184 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~ 184 (297)
++++.+ +++.+|++++++.+++.++++|++ +++| +|.+.+.+++.++|++++.++|+|+++.. ........ .+
T Consensus 125 --~~v~~~-~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~-~~~~~~~~-~~ 199 (351)
T PRK14807 125 --IPVKLK-EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFE-FYGNTIVD-VI 199 (351)
T ss_pred --EEeecC-CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchh-hcccchHH-Hh
Confidence 334455 457899999999997558999998 7888 89999999999999998889999999742 21110000 01
Q ss_pred C--CccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhh
Q 022463 185 E--YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 260 (297)
Q Consensus 185 ~--~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~ 260 (297)
. .--+++.|++|.++ |-+-|+++.++ ++.+.+.....+ ...+.+...++..+ +.+.
T Consensus 200 ~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~--------------~~~~~~~~~~~~---~~~~~~~q~~~~~~---l~~~ 259 (351)
T PRK14807 200 NEFENLIVLRTLSKAFGLAGLRVGYAVANE--------------NILKYLNLVKSP---YNINSLSQVIALKV---LRTG 259 (351)
T ss_pred hhCCCEEEEecchHhcccchhceeeeecCH--------------HHHHHHHHccCC---CCcCHHHHHHHHHH---HhHH
Confidence 1 12377899999873 33339999876 344444332211 12233333333333 3322
Q ss_pred cChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 261 ITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 261 ~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
.+++..++.+..++++.+.|++++.+
T Consensus 260 -~~~~~~~~~~~~r~~l~~~l~~~~g~ 285 (351)
T PRK14807 260 -VLKERVNYILNERERLIKELSKIPGI 285 (351)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34555555666677777777766554
No 192
>PRK07682 hypothetical protein; Validated
Probab=99.71 E-value=6.7e-16 Score=140.81 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=147.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+|. ++++ .|++|+|+ .++..++.++++|||.|++++++|+.....
T Consensus 52 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~---~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~------- 121 (378)
T PRK07682 52 SYTANAGLLELRQEIAKYLKKRFAVSYDPND---EIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPL------- 121 (378)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHH-------
Confidence 3555567788898777888777665 3432 38999987 466668888899999999998776644321
Q ss_pred ccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
+...|..+..+ +.+. +++.+|++.+++++.+ +++++++ +++| +|.+.+ +++|.++|++|++++|+|+++.
T Consensus 122 -~~~~g~~~~~~--~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~ 197 (378)
T PRK07682 122 -VTLAGGVPVPV--ATTLENEFKVQPAQIEAAITA-KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYA 197 (378)
T ss_pred -HHHcCCEEEEe--ecCCccCCCCCHHHHHhhcCc-ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhh
Confidence 22223323333 3332 3578999999999987 8898887 7878 887765 6788999999999999999976
Q ss_pred cccccccC---CCCC-CCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchH
Q 022463 172 SGLVAAGV---IPSP-FEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNH 245 (297)
Q Consensus 172 ~g~~~~~~---~~~~-~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~ 245 (297)
........ ...+ ...-.+++.|++|.++.|. -|+++.+++ +.+.+....... ..+.+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~--------------~i~~l~~~~~~~-~~~~~~~ 262 (378)
T PRK07682 198 ELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVY--------------FSEAMLKIHQYS-MMCAPTM 262 (378)
T ss_pred hcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHH--------------HHHHHHHHHHhh-ccCCCHH
Confidence 43321110 0000 0123578899999874333 399998874 333333221111 1122333
Q ss_pred HHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 246 TITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 246 ~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
...++..+|+.- .. .+++++++.++..+++.+.|++.
T Consensus 263 ~q~a~~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~L~~~ 299 (378)
T PRK07682 263 AQFAALEALRAG-ND-DVIRMRDSYRKRRNFFVTSFNEI 299 (378)
T ss_pred HHHHHHHHHhCC-hH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 334434444311 11 35566666777778888888765
No 193
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.71 E-value=1.5e-15 Score=140.55 Aligned_cols=243 Identities=10% Similarity=0.016 Sum_probs=147.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+..+. +++ +|++|+|++ +...++.++++|||+|+++.+.|+....
T Consensus 89 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~----~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~-------- 156 (430)
T PLN00145 89 SYSTCVGLLPARRAIAEYLSRDLPYELSTD----DIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEA-------- 156 (430)
T ss_pred CCCCCccCHHHHHHHHHHHhhccCCCCChh----hEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------
Confidence 4555566788886666666554444 454 489999984 6666788889999999999866554322
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
.....|..+..+++.-+ +++.+|++.+++.+++ +++++++ +++| +|.+.+ +++|.++|+++|+++|+|+++.-
T Consensus 157 ~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~ 234 (430)
T PLN00145 157 RAVFSGLEVRHFDLLPE-RGWEVDLEGVEALADE-NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDH 234 (430)
T ss_pred HHHHcCCEEEEeeCCcc-cCCcCCHHHHHHHhCc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchh
Confidence 12233433444433222 4678999999999887 8888888 7888 898887 67888889999999999999653
Q ss_pred ccccccCCCCC---CCC--ccEEEecCCccCCCCCc--eEEEEecCc-hhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 173 GLVAAGVIPSP---FEY--ADVVTTTTHKSLRGPRG--AMIFFRKGV-KEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 173 g~~~~~~~~~~---~~~--~D~~~~s~~K~l~gp~g--G~i~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
-... +....+ +.. .=+++.|++|.+..|.= |+++..... .... ....+.+.... .....++.
T Consensus 235 ~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~ 304 (430)
T PLN00145 235 LTFG-SKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKE-------TKVVDSIRNYL--NISTDPAT 304 (430)
T ss_pred hccC-CCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhh-------hHHHHHHHHHh--cccCCCCH
Confidence 2211 101111 111 22667899998544333 999874321 0000 00111222221 11222344
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+...++..+|+.-.+. -+++..+..++..+.+.+.|++++.+.
T Consensus 305 ~~Q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~g~~ 347 (430)
T PLN00145 305 FVQGAIPQIIANTKEE-FFTKTLGLLKETADICYEKIKEIKCIT 347 (430)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4444444444421112 456667777777888888888876653
No 194
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.71 E-value=1.3e-15 Score=139.70 Aligned_cols=234 Identities=14% Similarity=0.085 Sum_probs=147.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 98 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~ 98 (297)
|+.......+++.+.+++.+.+| .+++ ++++++|+ +++..++.+++++||.|+++...|......
T Consensus 64 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~----~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~-------- 131 (393)
T PRK05764 64 YTPAAGIPELREAIAAKLKRDNGLDYDPS----QVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEM-------- 131 (393)
T ss_pred cCCCCChHHHHHHHHHHHHHHhCCCCCHH----HEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHH--------
Confidence 55555678888666666655555 4554 38888887 466667788899999999998776654332
Q ss_pred cceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 99 ISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 99 ~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
+...|.++..+ +.++ .++.+|++.+++.+++ +++++++ +++| +|.+.+ +++|.++|++||+++++|+++..
T Consensus 132 ~~~~g~~~~~~--~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 132 VKLAGGVPVFV--PTGEENGFKLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred HHHcCCEEEEE--ecCcccCCcCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccc
Confidence 22234334344 4442 3567899999999976 8888888 7777 787765 67889999999999999998753
Q ss_pred ccccc----cCCCC-C-CCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 173 GLVAA----GVIPS-P-FEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 173 g~~~~----~~~~~-~-~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
..... ..... + ..+.++++.|++|.++.|. -|+++.+++ +.+.+....... ..+++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~--------------~~~~~~~~~~~~-~~~~~~ 273 (393)
T PRK05764 209 LVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKE--------------LIKAMSKLQSHS-TSNPTS 273 (393)
T ss_pred eeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHH--------------HHHHHHHHHhhc-ccCCCh
Confidence 22110 00000 0 0135688899999874343 388887663 333333221111 223333
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
....++..+++. ... .+++.+++.+...+++.+.|++.+.+
T Consensus 274 ~~q~~~~~~l~~-~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~ 314 (393)
T PRK05764 274 IAQYAAVAALNG-PQD-EVEEMRQAFEERRDLMVDGLNEIPGL 314 (393)
T ss_pred HHHHHHHHHHcC-ChH-HHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 444444444431 112 45566677777778888888877544
No 195
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=99.71 E-value=2.2e-16 Score=142.07 Aligned_cols=238 Identities=14% Similarity=0.133 Sum_probs=153.1
Q ss_pred CCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcC-CCCeEEEecC----CCCCcccccc
Q 022463 18 GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-PHDRIMALDL----PHGGHLSHGY 92 (297)
Q Consensus 18 ~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~-~gd~Vl~~~~----~~~~~~~~~~ 92 (297)
|+..|++++....|| +.++++||.+. .+.+.+|..++..+++.+++ |||++++... .|+.++.-..
T Consensus 66 GDD~Y~gdpSv~~Le----e~vael~G~E~-----alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~ 136 (467)
T TIGR02617 66 GDEAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ 136 (467)
T ss_pred CCcccccCchHHHHH----HHHHHHhCCce-----EEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecch
Confidence 778899999999999 88889999986 25566898888878888888 8998886543 4555544221
Q ss_pred cccccccceeeeeeEeeecc------cC-CCCCcCCHHHHHHHhhhc---CCcEEEEc-CCCC--CCccc---HHHHHHH
Q 022463 93 QTDTKKISAVSIFFETMPYR------LN-ESTGYIDYDQLEKSATLF---RPKLIVAG-ASAY--ARLYD---YERIRKV 156 (297)
Q Consensus 93 ~~~~~~~~~~g~~~~~v~~~------~~-~~~~~~d~~~l~~~l~~~---~~~~v~~~-~~~~--G~~~~---~~~i~~l 156 (297)
. .+.+.|...+.++.+ .+ +..+.+|+++|++.|++. +...+... .+|. |.+.| ++++.++
T Consensus 137 g----~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~l 212 (467)
T TIGR02617 137 G----HSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEI 212 (467)
T ss_pred H----HHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHH
Confidence 1 133334333322111 11 135899999999999862 23333332 2242 55555 5588899
Q ss_pred HHhcCCEEEEehhhhcc-cc--------cccCCCC-----CCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccc
Q 022463 157 CNKQKAIMLADMAHISG-LV--------AAGVIPS-----PFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 222 (297)
Q Consensus 157 a~~~g~~livD~a~~~g-~~--------~~~~~~~-----~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~ 222 (297)
|++||++++.|+|.... .. ..+.... .+..+|.+++|++|.++.|-||++.++++--
T Consensus 213 a~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg~Lag~d~~~--------- 283 (467)
T TIGR02617 213 AKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGGLLCFKDDSF--------- 283 (467)
T ss_pred HHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccceEEecchhH---------
Confidence 99999999999987653 21 1122111 1247999999999999999999999998510
Q ss_pred hhhHHHHhhhcc--cCCC--CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHH
Q 022463 223 FYDYEEKINQAV--FPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFV 278 (297)
Q Consensus 223 ~~~~~~~~~~~~--~~~~--~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~ 278 (297)
.++..+++... +.++ .|+.+.-.+.+++.+|++..++.-+....+..+.|.+.|.
T Consensus 284 -~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~ 342 (467)
T TIGR02617 284 -FDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLE 342 (467)
T ss_pred -HHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 01222222211 1222 6677888899999999888766334444444444444444
No 196
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.70 E-value=1.6e-15 Score=139.34 Aligned_cols=228 Identities=12% Similarity=0.034 Sum_probs=140.5
Q ss_pred hhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccccccee
Q 022463 26 EYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
....++++.+.+++.+..|. ++++ +|++|+|++ +...++.+++++||.|+++.++|+..... +...
T Consensus 69 ~G~~~lr~aia~~~~~~~g~~~~~~~---~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~--------~~~~ 137 (399)
T PRK07681 69 SGIQEFHEAVTEYYNNTHNVILNADK---EVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETG--------IQMA 137 (399)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCC---eEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHH--------HHhc
Confidence 45677887776777666554 5522 499999995 66557788899999999998666554332 2333
Q ss_pred eeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhccccc
Q 022463 103 SIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVA 176 (297)
Q Consensus 103 g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~g~~~ 176 (297)
|..+..+ +.+++ .+.+|++++++.+.+ ++++|++ +++| +|.+.+ +++|.++|+++|+++|+|+++.--...
T Consensus 138 G~~~~~v--~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~ 214 (399)
T PRK07681 138 GATSYYM--PLKKENDFLPDLELIPEEIAD-KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFD 214 (399)
T ss_pred CCEEEEE--ecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeC
Confidence 4334444 45533 457899999998876 8999998 5888 898887 567888899999999999997632211
Q ss_pred ccCCC--CCCC---CccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHH
Q 022463 177 AGVIP--SPFE---YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITG 249 (297)
Q Consensus 177 ~~~~~--~~~~---~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a 249 (297)
..... ..+. .-.+++.|++|.++.| +-|+++.+++ +.+.+..... ....+.+.+...+
T Consensus 215 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~--------------l~~~~~~~~~-~~~~~~s~~~q~~ 279 (399)
T PRK07681 215 GNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEE--------------IVRALTQFKS-NTDYGVFLPIQKA 279 (399)
T ss_pred CCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHH--------------HHHHHHHHHh-hcccCCCHHHHHH
Confidence 10000 0011 2346788999977323 3499988763 3443332211 1111233333334
Q ss_pred HHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 250 LAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 250 l~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+..+++.-. . -+++.++..+...+++.+.|++.
T Consensus 280 ~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~ 312 (399)
T PRK07681 280 ACAALRNGA-A-FCEKNRGIYQERRDTLVDGFRTF 312 (399)
T ss_pred HHHHHhCcH-H-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 344442210 1 23445555566677777777665
No 197
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.70 E-value=1.5e-15 Score=140.05 Aligned_cols=239 Identities=15% Similarity=0.103 Sum_probs=144.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcC--------CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFR--------LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSH 90 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g--------~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~ 90 (297)
..|++.....++++.+.+++.+.++ +++++ |++|+|++ ++..++.+++++||+|+++.++|......
T Consensus 69 ~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~----i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~ 144 (412)
T PTZ00433 69 NGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDN----VVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETV 144 (412)
T ss_pred CCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhh----EEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHH
Confidence 4466556678888666666665432 45554 99999984 66667888899999999998766665332
Q ss_pred cccccccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEE
Q 022463 91 GYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIM 164 (297)
Q Consensus 91 ~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~l 164 (297)
+...|..+..++ .++ .++.+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|+++|+++
T Consensus 145 --------~~~~g~~~~~i~--~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~i 213 (412)
T PTZ00433 145 --------CKAYGIEMRFYN--CRPEKDWEADLDEIRRLVDD-RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPL 213 (412)
T ss_pred --------HHHcCCEEEEEe--cCccccCcCCHHHHHHHhcc-CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeE
Confidence 223333344444 332 3568999999998887 8999888 7888 897665 667788899999999
Q ss_pred EEehhhhcccccccCCCCC---CC--CccEEEecCCccCCC--CCceEEEEe-cCchhhccCCccchhhHHHHhhhcccC
Q 022463 165 LADMAHISGLVAAGVIPSP---FE--YADVVTTTTHKSLRG--PRGAMIFFR-KGVKEINKQGKEVFYDYEEKINQAVFP 236 (297)
Q Consensus 165 ivD~a~~~g~~~~~~~~~~---~~--~~D~~~~s~~K~l~g--p~gG~i~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (297)
|+|+++.. ....+....+ +. ..-+++.|++|.++. -+-|+++.. +.... .++.+.+......
T Consensus 214 i~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~---------~~~~~~~~~~~~~ 283 (412)
T PTZ00433 214 ISDEIYAG-MVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNG---------GDFLDGMKRLGML 283 (412)
T ss_pred EEeccccc-cccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccH---------HHHHHHHHHHhhc
Confidence 99999752 2211100001 11 112667899997643 333999973 21000 0233333322111
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 237 GLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 237 ~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
..+.+.+...++..++..-.+. -+++++++.++..+.+.+.|++...
T Consensus 284 --~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~ 330 (412)
T PTZ00433 284 --VCGPCSVVQAALGEALLNTPQE-HLEQIVAKLEEGAMVLYNHIGECIG 330 (412)
T ss_pred --cCCCChHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1123334444444444321112 3556666777777778888876543
No 198
>PRK07337 aminotransferase; Validated
Probab=99.70 E-value=8.6e-16 Score=140.59 Aligned_cols=175 Identities=14% Similarity=0.058 Sum_probs=118.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+|. +++ ++++|+|++ +...++.+++++||+|+++.++|++......
T Consensus 62 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~----~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----- 132 (388)
T PRK07337 62 QYTSALGLAPLREAIAAWYARRFGLDVAPE----RIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVA----- 132 (388)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCChH----hEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----
Confidence 3555556788887766777666665 554 388989884 5555777889999999999988777643222
Q ss_pred ccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
..|..+..+ +.+. +++.+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|+++++++|+|+++.
T Consensus 133 ---~~g~~~~~~--~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~ 206 (388)
T PRK07337 133 ---AAEGRPVLV--PSGPAERFQLTAADVEAAWGE-RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQ 206 (388)
T ss_pred ---HcCCEEEEe--ecCCccCCcCCHHHHHhhcCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEecccc
Confidence 223224344 4442 3568999999999987 8888888 7888 897776 5688888999999999999864
Q ss_pred cccccccCCCCCCC-CccE-EEecCCccCC--CCCceEEEEecC
Q 022463 172 SGLVAAGVIPSPFE-YADV-VTTTTHKSLR--GPRGAMIFFRKG 211 (297)
Q Consensus 172 ~g~~~~~~~~~~~~-~~D~-~~~s~~K~l~--gp~gG~i~~~~~ 211 (297)
. ....+....... +.++ ++.|++|.++ |.+-|+++++++
T Consensus 207 ~-~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~ 249 (388)
T PRK07337 207 G-LSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEA 249 (388)
T ss_pred c-cccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHH
Confidence 2 211111111111 2344 4679999874 344499998773
No 199
>PLN02656 tyrosine transaminase
Probab=99.70 E-value=1.8e-15 Score=139.45 Aligned_cols=241 Identities=13% Similarity=0.028 Sum_probs=146.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+......++++.+.+++.+..| ++++ +|++|+|++ +...++.+++++||+|+++++.|+.....
T Consensus 67 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~------ 136 (409)
T PLN02656 67 NGYAPTVGLPQARRAIAEYLSRDLPYKLSLD----DVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELC------ 136 (409)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcc----cEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHH------
Confidence 3455556678888766677766555 3554 488989884 66557778889999999998776543221
Q ss_pred cccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcc---cHHHHHHHHHhcCCEEEEehhh
Q 022463 97 KKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLY---DYERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~---~~~~i~~la~~~g~~livD~a~ 170 (297)
+...|..+..++ .++ +++.+|++.+++.+++ +++++++ +++| +|.+. ++++|.++|+++|+++|+|+++
T Consensus 137 --~~~~g~~~~~i~--~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y 211 (409)
T PLN02656 137 --AAFRHLEVRYVD--LLPEKGWEVDLDAVEALADQ-NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVY 211 (409)
T ss_pred --HHHcCCEEEEEe--CCCcCCCCCCHHHHHHHhcc-CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhh
Confidence 222343344444 432 3567999999999876 7888877 7888 88775 5778899999999999999997
Q ss_pred hcccccccCCCCCC---CC--ccEEEecCCccCCCCCc--eEEEEecCc-hhhccCCccchhhHHHHhhhcccCCCCCCC
Q 022463 171 ISGLVAAGVIPSPF---EY--ADVVTTTTHKSLRGPRG--AMIFFRKGV-KEINKQGKEVFYDYEEKINQAVFPGLQGGP 242 (297)
Q Consensus 171 ~~g~~~~~~~~~~~---~~--~D~~~~s~~K~l~gp~g--G~i~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~ 242 (297)
.--... +....++ .. -=+++.|++|.+..|.- |+++..+.. ..+ ..++.+.+...... .+.+
T Consensus 212 ~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~ 281 (409)
T PLN02656 212 GHLAFG-SNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFR-------DPKIVERIKKYFDI--LGGP 281 (409)
T ss_pred hhcccC-CCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccc-------cHHHHHHHHHHHhh--hcCC
Confidence 522111 1010111 11 12567899997644443 999985310 000 00233333322111 1223
Q ss_pred chHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 243 HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 243 ~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+.+...++..+|+.-.+. -+++.+++.++..+++.+.|++++.
T Consensus 282 s~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~L~~~~~ 324 (409)
T PLN02656 282 ATFIQAAVPTILEQTDES-FFKKTINILKQSSDICCDRIKEIPC 324 (409)
T ss_pred CHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 445555555555421112 3566666677777888888877653
No 200
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.70 E-value=2.5e-16 Score=145.01 Aligned_cols=228 Identities=21% Similarity=0.163 Sum_probs=162.1
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecc
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 112 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 112 (297)
++++..|+.||++.. .++++|| ++|.+++.+++++||.||++.+.|-|... ++.++|+....+.-.
T Consensus 74 eAqe~aA~~fgAd~t-----yFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~--------glilaGa~Pvyl~p~ 140 (557)
T COG1982 74 EAQELAARVFGADHT-----YFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHH--------GLILAGATPVYLEPS 140 (557)
T ss_pred HHHHHHHHHhCCCce-----EEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHH--------HHHHcCCceEEecCC
Confidence 455999999999984 7777888 59998999999999999999988888754 233444444333323
Q ss_pred cCCC---CCcCCHHHHHHHhhhcC-C-cEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCC--
Q 022463 113 LNES---TGYIDYDQLEKSATLFR-P-KLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-- 184 (297)
Q Consensus 113 ~~~~---~~~~d~~~l~~~l~~~~-~-~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~-- 184 (297)
.++. -+.++.+.+++++.+++ - +++++ +++-+|.+.++++|.+.++++++++.+|.+|.+-....++.+.+.
T Consensus 141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~ 220 (557)
T COG1982 141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALN 220 (557)
T ss_pred CCccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhh
Confidence 3321 25899999999887633 2 56666 677789999999999999999999999999876554444333221
Q ss_pred CCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcCh
Q 022463 185 EYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITF 263 (297)
Q Consensus 185 ~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~ 263 (297)
.++|+++.|.||.+++... ++|.+++.-. -..++++..+.-..+++|+++.++++.+|-.+.... |.
T Consensus 221 ~~~~~~tqS~HK~l~alSQaS~iHv~~~~~-----------~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~-G~ 288 (557)
T COG1982 221 GGADFVTQSTHKLLAALSQASMIHVKDGRA-----------VNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNA-GR 288 (557)
T ss_pred cCceEEEechhhhhhhhhhhHHHhhCCCcc-----------CCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhh-hH
Confidence 3899999999999988666 6666665200 113344444333347789999999999977666655 65
Q ss_pred hhH---HHHhhhhHHHHHhhccCCCC
Q 022463 264 SHI---HVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 264 ~~~---~~~~~~l~~~l~~~l~~~~~ 286 (297)
+.. .+.-.+.++++++..+++++
T Consensus 289 ~l~~~~~~~~i~~r~~~~~~~~~~~~ 314 (557)
T COG1982 289 ELWQEVIDEAIDFRKALRRLINEIGF 314 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 443 45555666666666666664
No 201
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.70 E-value=7.5e-16 Score=145.90 Aligned_cols=173 Identities=18% Similarity=0.149 Sum_probs=117.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHc--CCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAF--RLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~--g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+...+..++++.+.+++.+.. ++++++ |++++|++ +...++.+++++||+|+++.+.|+....
T Consensus 180 ~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~----I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~-------- 247 (517)
T PRK13355 180 GYSDSKGLFSARKAIMQYAQLKGLPNVDVDD----IYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTA-------- 247 (517)
T ss_pred CCCCCcChHHHHHHHHHHHHhcCCCCCChhH----EEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHH--------
Confidence 46777778888866656554443 356654 99999995 5555788889999999999876655432
Q ss_pred ccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
.+...|..+..+ +.++ .++.+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|++|+++||+|+++.
T Consensus 248 ~~~~~g~~~v~~--~~~~~~~~~~d~~~l~~~~~~-~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~ 324 (517)
T PRK13355 248 CVNLAGGTAVHY--RCDEQSEWYPDIDDIRSKITS-RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYD 324 (517)
T ss_pred HHHHCCCEEEEe--ecCcccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhh
Confidence 233334334333 4443 3578999999999987 8999888 7888 898887 7788899999999999999975
Q ss_pred cccccccCCCCCCC--Ccc--EE-EecCCccC--CCCCceEEEEe
Q 022463 172 SGLVAAGVIPSPFE--YAD--VV-TTTTHKSL--RGPRGAMIFFR 209 (297)
Q Consensus 172 ~g~~~~~~~~~~~~--~~D--~~-~~s~~K~l--~gp~gG~i~~~ 209 (297)
--... +....++. ..| ++ +.|++|.+ .|.+-|+++..
T Consensus 325 ~~~~~-~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~ 368 (517)
T PRK13355 325 RLVMD-GLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILS 368 (517)
T ss_pred hhcCC-CCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEee
Confidence 21111 11101110 123 23 47889975 45555999864
No 202
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.70 E-value=4.6e-16 Score=135.52 Aligned_cols=237 Identities=17% Similarity=0.121 Sum_probs=172.8
Q ss_pred cccccCCCCCCCCccCCCc-hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCC
Q 022463 7 VMTNKYSEGYPGARYYGGN-EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLP 83 (297)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~ 83 (297)
...++|+.|..|.|...+. .....|| +.||++.+-+.. ++|+|..-+|-..+..+ .-||-+|...+..
T Consensus 196 ~tl~~hG~GAGGTRNIsG~s~~hv~LE----~eLA~LHqK~aA-----LlFsSCfVANDstLftLak~lpgcei~SD~gN 266 (570)
T KOG1360|consen 196 DTLDRHGAGAGGTRNISGHSKHHVRLE----AELADLHQKEAA-----LLFSSCFVANDSTLFTLAKKLPGCEIFSDEGN 266 (570)
T ss_pred HHHHHcCCCcCCccccCCCCchhhhHH----HHHHHHhcCcce-----eeeeeeeeccchHHHHHHHHCCCcEEeccccc
Confidence 3468899999999988755 7777899 999999998764 88888886766555555 4599999988877
Q ss_pred CCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-c-CCCCCCcccHHHHHHHHH
Q 022463 84 HGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA-G-ASAYARLYDYERIRKVCN 158 (297)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~-~-~~~~G~~~~~~~i~~la~ 158 (297)
|.|... |++-.+.. ..++ . .-|+++|++.+.. ..||+|.+ + .|..|.+.|++||+++++
T Consensus 267 HASMI~--------GIrns~v~-K~IF-r------HND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah 330 (570)
T KOG1360|consen 267 HASMIQ--------GIRNSRVP-KHIF-R------HNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH 330 (570)
T ss_pred hHHHHH--------HhhhcCCc-ceee-c------cCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH
Confidence 777643 23322211 1222 2 3478899988874 24789999 5 566899999999999999
Q ss_pred hcCCEEEEehhhhcccccc-----cCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhc
Q 022463 159 KQKAIMLADMAHISGLVAA-----GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQA 233 (297)
Q Consensus 159 ~~g~~livD~a~~~g~~~~-----~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (297)
+||++.++|+.|++|.... +..+.-....|+++++..|.| |.-||+|.... .+.|.+...
T Consensus 331 ~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVGGYIAat~--------------~LvDmiRSy 395 (570)
T KOG1360|consen 331 KYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVGGYIAATR--------------KLVDMIRSY 395 (570)
T ss_pred HhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-ccccceehhhh--------------hHHHHHHHh
Confidence 9999999999999987642 222322336899999999987 77889999877 345544433
Q ss_pred ccCCC--CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 234 VFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 234 ~~~~~--~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
.+++ ..+.+...++++.+|++.+..++|.. +++.++....++++.|.+..
T Consensus 396 -AaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~-lR~~hqrnv~~~kq~l~~~G 447 (570)
T KOG1360|consen 396 -AAGFIFTTSLPPMVLAGALEAVRILKSEEGRV-LRRQHQRNVKYVKQLLMELG 447 (570)
T ss_pred -cCceEEecCCChHHHHhHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHcC
Confidence 3443 44556677788889999998875654 55566778888888886643
No 203
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.69 E-value=2.3e-15 Score=137.75 Aligned_cols=233 Identities=16% Similarity=0.102 Sum_probs=141.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+..| +++++ +|++|+|++ +...++.++++|||.|+++.+.+.....
T Consensus 63 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~-------- 131 (388)
T PRK07366 63 GYLLFHGTLDFREAAAQWYEQRFGLAVDPET---EVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAG-------- 131 (388)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcCCCcC---eEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------
Confidence 355556677888777777766656 45542 399999994 6666778889999999998866555532
Q ss_pred ccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHH---HHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYE---RIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~---~i~~la~~~g~~livD~a~~ 171 (297)
.+...|..+..++ .++ ..+.+|++++++.+.+ +++++++ +++| +|.+.+.+ +|.++|++||+++|+|+++.
T Consensus 132 ~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~ 208 (388)
T PRK07366 132 GVYLAGGQIYPMP--LRAENDFLPVFADIPTEVLA-QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYV 208 (388)
T ss_pred HHHhcCCEEEEEE--CCCccCCCCCHHHHHHhhcc-cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchh
Confidence 2333444444444 442 2467889999888776 7899988 6778 89777654 67778999999999999865
Q ss_pred cccccccC-CC--CCCC-Ccc--EEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCc
Q 022463 172 SGLVAAGV-IP--SPFE-YAD--VVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPH 243 (297)
Q Consensus 172 ~g~~~~~~-~~--~~~~-~~D--~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~ 243 (297)
--...... .+ ..+. .-+ +++.|++|.++ |-+-|+++.+++ +.+.+.........++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~--------------li~~l~~~~~~~~~~~~~ 274 (388)
T PRK07366 209 DLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQ--------------LIQALRQVKAVVDFNQYR 274 (388)
T ss_pred hcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHH--------------HHHHHHHHHhhcccCCCH
Confidence 32211100 00 0011 112 56789999873 444499998773 444443322111111211
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
....++.+++.. .+. -+++.++..++..+++.+.|++.
T Consensus 275 -~~~~~a~~~l~~-~~~-~l~~~~~~~~~~r~~l~~~L~~~ 312 (388)
T PRK07366 275 -GILNGAIAALTG-PQA-TVQQTVQIFRQRRDAFINALHQI 312 (388)
T ss_pred -HHHHHHHHHHhC-cHH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 122222333321 112 45566666777777777777665
No 204
>PLN02231 alanine transaminase
Probab=99.69 E-value=4e-15 Score=140.66 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=119.7
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhc-CCCCeEEEecCCCCCcccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
...|+...+..++++.+.+++.+..|. ++++ |++|+|++ +...++..++ .+||.|+++.+.|+.....
T Consensus 161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~----I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~---- 232 (534)
T PLN02231 161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADPND----IFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSAS---- 232 (534)
T ss_pred ccCcCCCCCcHHHHHHHHHHHHhccCCCCCccc----EEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHH----
Confidence 455777888899998888888776564 5554 99999995 6655777777 4899999998666555332
Q ss_pred cccccceeeeeeEeeecccCCC-CCcCCHHHHHHHhhhc-----CCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCE
Q 022463 95 DTKKISAVSIFFETMPYRLNES-TGYIDYDQLEKSATLF-----RPKLIVA-GASA-YARLYD---YERIRKVCNKQKAI 163 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~-----~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~ 163 (297)
+...|..+ ++++.+++ ++.+|+++|++.+++. +++++++ +++| +|.+.+ +++|.++|++||++
T Consensus 233 ----~~~~g~~~--v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~ 306 (534)
T PLN02231 233 ----IALHGGTL--VPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLV 306 (534)
T ss_pred ----HHHcCCEE--EEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 22334333 44455533 4689999999998752 5788777 7888 897765 55888889999999
Q ss_pred EEEehhhhcccccccCCCCCCC-----------Ccc-EEEecCCccC---CCCCceEEEE
Q 022463 164 MLADMAHISGLVAAGVIPSPFE-----------YAD-VVTTTTHKSL---RGPRGAMIFF 208 (297)
Q Consensus 164 livD~a~~~g~~~~~~~~~~~~-----------~~D-~~~~s~~K~l---~gp~gG~i~~ 208 (297)
+|+|+++.--....+....++. ... +++.|++|.+ +|-++|++.+
T Consensus 307 lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~ 366 (534)
T PLN02231 307 LLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 366 (534)
T ss_pred EEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEE
Confidence 9999986532221110000110 111 4456999965 4677799876
No 205
>PRK10534 L-threonine aldolase; Provisional
Probab=99.69 E-value=1.9e-15 Score=135.42 Aligned_cols=176 Identities=15% Similarity=0.206 Sum_probs=115.0
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 98 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~ 98 (297)
...|+..+...+++ +.+++++|.++. +++++|++++...+.+++.+||+|+++...|...+... +
T Consensus 27 ~~~Y~~~~~~~~L~----~~la~~~g~~~~-----~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~------~ 91 (333)
T PRK10534 27 DDVYGDDPTVNALQ----DYAAELSGKEAA-----LFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAG------G 91 (333)
T ss_pred CcccCCCHHHHHHH----HHHHHHhCCCeE-----EEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCC------c
Confidence 34455567778888 889999999763 66667777776677778999999998765553222111 1
Q ss_pred cceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc-----CCcEEEEcCCCCCCcccHHHH---HHHHHhcCCEEEEehhh
Q 022463 99 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAGASAYARLYDYERI---RKVCNKQKAIMLADMAH 170 (297)
Q Consensus 99 ~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~~G~~~~~~~i---~~la~~~g~~livD~a~ 170 (297)
+...+ ..+.++++.+ .++.+|+++++++++++ ++++|+++.+++|.+.|.++| .++|+++++++++|+|+
T Consensus 92 ~~~~~-~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~ 169 (333)
T PRK10534 92 AAVLG-SIQPQPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLPREYLKQAWEFTRERNLALHVDGAR 169 (333)
T ss_pred hHHhc-CceEEeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEEecCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHH
Confidence 11111 0223444555 56889999999998653 578888843346988777654 56789999999999997
Q ss_pred hcccccc-cCCCCC-CCCccEEEecCCccCCCCCceEEEEecC
Q 022463 171 ISGLVAA-GVIPSP-FEYADVVTTTTHKSLRGPRGAMIFFRKG 211 (297)
Q Consensus 171 ~~g~~~~-~~~~~~-~~~~D~~~~s~~K~l~gp~gG~i~~~~~ 211 (297)
..+.... +..... ..+.|.++.|++|.++.+.||+++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~ 212 (333)
T PRK10534 170 IFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRD 212 (333)
T ss_pred HHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHH
Confidence 6432211 111000 0145766778999887676667777663
No 206
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=99.69 E-value=1.1e-15 Score=136.57 Aligned_cols=236 Identities=11% Similarity=0.074 Sum_probs=153.1
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCC--hHHHHHHHHHhcCCCCeEE-EecCCCCCccccccccccccccee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG--SPSNFQVYTALLKPHDRIM-ALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG--~~~~~~~~~~~~~~gd~Vl-~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
+...++-+++++.|+++++.+.+. .|++.+| |.+..++..+++.+||.++ +... +.++....-..+. +
T Consensus 45 ~~F~~i~~~~~~~Lr~Ll~~P~~y---~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~t---G~fg~r~~~ea~~--~- 115 (364)
T PRK12462 45 SWFSSLLAQAEADLRDLLGIPDEY---GVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTT---GYWSRKAIGEASR--V- 115 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC---eEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeC---CHHHHHHHHHHHh--c-
Confidence 444566667789999999995332 2555433 4577778899999999665 4332 2222111111111 1
Q ss_pred eeeeEeeecccC-CCCCcCCHHHHHHHhhhcCCcEEEE--cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 103 SIFFETMPYRLN-ESTGYIDYDQLEKSATLFRPKLIVA--GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 103 g~~~~~v~~~~~-~~~~~~d~~~l~~~l~~~~~~~v~~--~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
| .+..+..... +....++++++ .+.+ +.+.|.+ +.+.+|...| ++.+.+++++++|++.+++..++++
T Consensus 116 g-~v~~~~~~~~~~~~~~p~~~~~--~~~~-d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~ 186 (364)
T PRK12462 116 A-AMRVVWDGAASGYRTLPSLAEL--DWDA-RAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDV 186 (364)
T ss_pred C-CceEecCcCCCCCCcCCCHHHh--ccCC-CCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCCh
Confidence 1 1222211011 01234555554 2222 4677766 4666887776 3444479999999999999998887
Q ss_pred CCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 180 IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 180 ~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
..+ |++.++++|+|+ |.| +++++++++..+....-+...+|....... ....||++..++++..+|+++.
T Consensus 187 ~~~-----dvi~agsQKnlg-P~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~---s~~nTPpv~~iy~l~~~l~~i~ 257 (364)
T PRK12462 187 EAY-----GMVYAHAQKNLG-PAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHR---SNYNTPPVFAIYVMALVLRWIR 257 (364)
T ss_pred HHc-----cEEEeeccccCC-CCceEEEEECHHHHhhccccCCchhhHHHHHhcC---CCCCCchHHHHHHHHHHHHHHH
Confidence 765 999999999996 999 999999976433111111111222222221 2345999999999999999998
Q ss_pred hh-cChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 259 TL-ITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 259 ~~-~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
++ .|++.+.+++++.++.+++.+++++.+-
T Consensus 258 ~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~ 288 (364)
T PRK12462 258 DEIGGVHAMRDINARKAAMLYATLDALNEVI 288 (364)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77 5999999999999999999999998443
No 207
>PRK08068 transaminase; Reviewed
Probab=99.69 E-value=4.4e-15 Score=135.99 Aligned_cols=232 Identities=18% Similarity=0.089 Sum_probs=141.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+| +++++ +|++|+|++ +...++.+++++||.|+++.++|+.....
T Consensus 65 ~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~---~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~------- 134 (389)
T PRK08068 65 KYSPFRGYPFLKEAAADFYKREYGVTLDPET---EVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSG------- 134 (389)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH-------
Confidence 344455668888777677765556 45541 388889984 55557788899999999998766555332
Q ss_pred ccceeeeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHH---HHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYE---RIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~---~i~~la~~~g~~livD~a~~ 171 (297)
+...|..+..+ +.+++ ++.+|++++++.+.+ ++++|++ +++| +|.+.+.+ +|.++|+++++++|+|+++.
T Consensus 135 -~~~~g~~~~~i--~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~ 210 (389)
T PRK08068 135 -VALARAQFETM--PLIAENNFLPDYTKIPEEVAE-KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYG 210 (389)
T ss_pred -HHhcCCEEEEe--ecccccCCCCCHHHHHHhccc-cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhh
Confidence 23344434444 44433 467899999999876 8999988 6888 89888764 77778999999999999974
Q ss_pred cccccccCCCCCC---C---CccEEEecCCccCCC--CCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCc
Q 022463 172 SGLVAAGVIPSPF---E---YADVVTTTTHKSLRG--PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPH 243 (297)
Q Consensus 172 ~g~~~~~~~~~~~---~---~~D~~~~s~~K~l~g--p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~ 243 (297)
.-... +....++ . ...+++.|++|.++. -+-|+++.++ ++.+.+.....+...+.++
T Consensus 211 ~~~~~-~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--------------~l~~~l~~~~~~~~~~~~~ 275 (389)
T PRK08068 211 AIGFD-GQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNE--------------SVIEAINLLQDHLFVSLFG 275 (389)
T ss_pred hhccC-CCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCH--------------HHHHHHHHHHhhccCCCCh
Confidence 21111 1000010 0 234778899998733 3339998776 3444443332221122222
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
. ...++..++..- .. -+++.+++.++..+++.+.|++.
T Consensus 276 ~-~q~~~~~~l~~~-~~-~~~~~~~~~~~~r~~~~~~L~~~ 313 (389)
T PRK08068 276 A-IQDAAIEALLSD-QS-CVAELVARYESRRNAFISACREI 313 (389)
T ss_pred H-HHHHHHHHHhCc-HH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 1 222222223210 11 34556666677777777777665
No 208
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.68 E-value=3.3e-15 Score=136.88 Aligned_cols=232 Identities=14% Similarity=0.088 Sum_probs=142.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 98 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~ 98 (297)
|.......++++.+.+++.+.++. ++++ +|++++|+ +++..++.+++++||+|+++.+.|......
T Consensus 63 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~---~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~-------- 131 (391)
T PRK07309 63 YTGMAGLLELRQAAADFVKEKYNLDYAPEN---EILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPI-------- 131 (391)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHH--------
Confidence 544455688887777877766665 2222 48898888 466667888899999999998766665332
Q ss_pred cceeeeeeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 99 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 99 ~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
++..|.++. .++.++.++.+|++.+++.+++ .+++++++ +++| +|.+.+ +++|.++|++||+++|+|+++.
T Consensus 132 ~~~~g~~~~--~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~ 209 (391)
T PRK07309 132 VNLVGAEIV--EIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYS 209 (391)
T ss_pred HHHcCCEEE--EEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 222333343 3445434567999999999864 25788888 6788 897765 7788999999999999999976
Q ss_pred cccccccCCCCCCC----CccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchH
Q 022463 172 SGLVAAGVIPSPFE----YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNH 245 (297)
Q Consensus 172 ~g~~~~~~~~~~~~----~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~ 245 (297)
.-... +....+.. .--+++.|++|.++.| +-|+++.+++ +.+.+.... +....+++.+
T Consensus 210 ~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~--------------~~~~~~~~~-~~~~~~~~~~ 273 (391)
T PRK07309 210 ELTYT-GEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAE--------------FTAQLIKSH-QYLVTAATTM 273 (391)
T ss_pred ceeeC-CCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHH--------------HHHHHHHHH-hhcccCCChH
Confidence 33221 11111111 1237788999987433 3399998874 344433221 1111233434
Q ss_pred HHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 246 TITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 246 ~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
...++..+++.-.. -....+++.++.++++.+.|++.
T Consensus 274 ~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 310 (391)
T PRK07309 274 AQFAAVEALTNGKD--DALPMKKEYIKRRDYIIEKMTDL 310 (391)
T ss_pred HHHHHHHHHhCChh--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 44444444432111 12234445555666777777654
No 209
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.68 E-value=5.4e-15 Score=135.67 Aligned_cols=178 Identities=11% Similarity=0.066 Sum_probs=119.8
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcC---CCCCCCcceEEecCChH-HHHHHHHHhcCC---CCeEEEecCCCCCcccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFR---LDPEKWGVNVQSLSGSP-SNFQVYTALLKP---HDRIMALDLPHGGHLSHGY 92 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g---~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~---gd~Vl~~~~~~~~~~~~~~ 92 (297)
..|+...+..++++.+.+++.+.+| +++++ +|++|+|++ +...+++++++| ||.|+++.+.+.....
T Consensus 59 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~---~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~--- 132 (396)
T PRK09147 59 ASYPTTAGLPALREAIAAWLERRYGLPALDPAT---QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEG--- 132 (396)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccc---eEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHH---
Confidence 4466566678888877788877777 44432 399999994 666688888999 9999998855543322
Q ss_pred cccccccceeeeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEE
Q 022463 93 QTDTKKISAVSIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLA 166 (297)
Q Consensus 93 ~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~liv 166 (297)
.+...|.++..+ +.+++ ++.+|++.+++.+.+ +++++++ +++| +|.+.+ +++|.++|++|++++|+
T Consensus 133 -----~~~~~g~~~~~v--p~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 133 -----AALLAGAEPYFL--NCDPANNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred -----HHHhcCCEEEEe--ccCccccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEe
Confidence 233344334444 45433 467999999988876 8999998 7888 897775 55777888999999999
Q ss_pred ehhhhcccccccCCCCC-C-----CCc---c--EEEecCCccC--CCCCceEEEEecC
Q 022463 167 DMAHISGLVAAGVIPSP-F-----EYA---D--VVTTTTHKSL--RGPRGAMIFFRKG 211 (297)
Q Consensus 167 D~a~~~g~~~~~~~~~~-~-----~~~---D--~~~~s~~K~l--~gp~gG~i~~~~~ 211 (297)
|+++..-.........+ + .+. | +++.|++|.+ .|-+-|+++.+++
T Consensus 205 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~ 262 (396)
T PRK09147 205 DECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAA 262 (396)
T ss_pred eccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHH
Confidence 99975432111000000 0 011 2 7789999954 4444499998773
No 210
>PRK09265 aminotransferase AlaT; Validated
Probab=99.68 E-value=4.3e-15 Score=136.71 Aligned_cols=174 Identities=17% Similarity=0.089 Sum_probs=112.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHc--CCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAF--RLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~--g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.. ++++++ |++++|++ ++..++.+++++||+|+++.++|........
T Consensus 67 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~----i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----- 137 (404)
T PRK09265 67 GYSDSKGLFSARKAIMQYYQQKGIPDVDVDD----IYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVS----- 137 (404)
T ss_pred CCCCCCCcHHHHHHHHHHHhccCCCCCCccc----EEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHH-----
Confidence 35555556677744444433211 567664 99999995 5555778889999999999977765433221
Q ss_pred ccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhh
Q 022463 98 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~ 171 (297)
..|.....+ +.+. +++.+|++++++.+++ ++++|++ +++| +|.+.+ +++|.++|+++|+++|+|+++.
T Consensus 138 ---~~g~~~v~~--~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~ 211 (404)
T PRK09265 138 ---LSGGKPVHY--LCDEEAGWFPDLDDIRSKITP-RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYD 211 (404)
T ss_pred ---HcCCEEEEE--ecccccCCCCCHHHHHHhccc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhh
Confidence 222223233 3332 3567999999999976 8998888 7888 898888 7889999999999999999975
Q ss_pred cccccccCCCC--CCC-Ccc-EEEecCCccCC--CCCceEEEEe
Q 022463 172 SGLVAAGVIPS--PFE-YAD-VVTTTTHKSLR--GPRGAMIFFR 209 (297)
Q Consensus 172 ~g~~~~~~~~~--~~~-~~D-~~~~s~~K~l~--gp~gG~i~~~ 209 (297)
--......... .+. ... +++.|++|.++ |-+-|+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~ 255 (404)
T PRK09265 212 KILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLS 255 (404)
T ss_pred hccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEe
Confidence 21111100000 000 122 34678899874 3444999874
No 211
>PRK07683 aminotransferase A; Validated
Probab=99.67 E-value=5.5e-15 Score=135.21 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=119.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+|. +++. +|++|+|+ .++..++.+++++||+|+++...+..+....
T Consensus 60 ~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~---~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~------ 130 (387)
T PRK07683 60 SYTHNAGLLELRKAACNFVKDKYDLHYSPES---EIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPII------ 130 (387)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHH------
Confidence 3444456688887766777655554 5541 38999997 4666677888999999999886555443222
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
...|..+ ++++.++++..+|.+.+++.+++ +++++++ +++| +|...+ +++|.++|+++|+++|+|+++..
T Consensus 131 --~~~g~~~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~ 205 (387)
T PRK07683 131 --RLCGAKP--VFIDTRSTGFRLTAEALENAITE-KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSE 205 (387)
T ss_pred --HHcCCEE--EEeecCcccCCCCHHHHHHhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccccc
Confidence 2233334 34455545677889999999987 8899888 6877 887665 67889999999999999999764
Q ss_pred ccccccCCC-CCC---CCccEEEecCCccCCCC--CceEEEEecC
Q 022463 173 GLVAAGVIP-SPF---EYADVVTTTTHKSLRGP--RGAMIFFRKG 211 (297)
Q Consensus 173 g~~~~~~~~-~~~---~~~D~~~~s~~K~l~gp--~gG~i~~~~~ 211 (297)
......... ..+ .+-.+++.|++|.++.| +-|+++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~ 250 (387)
T PRK07683 206 LVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSY 250 (387)
T ss_pred ceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHH
Confidence 322111100 001 02247789999987534 3399998773
No 212
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.67 E-value=2.3e-15 Score=135.96 Aligned_cols=214 Identities=16% Similarity=0.115 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeE
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 107 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 107 (297)
.+++ +.+++++++++++ |++|+|++ +...+++++++|||+|+++.+.|+.... .+...|..+.
T Consensus 63 ~~lr----~aia~~~~~~~~~----I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~ 126 (353)
T PRK05387 63 DALR----QAIAAYYGLDPEQ----VFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPV--------YAGLYGIPYE 126 (353)
T ss_pred HHHH----HHHHHHhCCCHHH----EEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHH--------HHHHcCCEEE
Confidence 4555 8888889998864 99999994 6666788889999999999865533321 1223343343
Q ss_pred eeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc-CCEEEEehhhhcccccccCCCC-C
Q 022463 108 TMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPS-P 183 (297)
Q Consensus 108 ~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~-g~~livD~a~~~g~~~~~~~~~-~ 183 (297)
.+ +.+ +++.+|++++++ +++++++ +++| +|.+.|.+++.++++.+ ++++|+|+++.. ......... .
T Consensus 127 ~v--~~~-~~~~~d~~~l~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~-~~~~~~~~~~~ 197 (353)
T PRK05387 127 EI--PLD-DDFSIDVEDYLR-----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVD-FGGESAIPLID 197 (353)
T ss_pred Ee--ecC-CCCCCCHHHHHh-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccc-cCCcchHHHHh
Confidence 44 455 457899998863 4567777 7888 89999999999999876 999999998742 110000000 0
Q ss_pred CCCccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 184 FEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 184 ~~~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
...-.+++.|++|.++ |.+-|+++.++ ++.+.+..........+.+.+...++..+++ +..
T Consensus 198 ~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~---~~~ 260 (353)
T PRK05387 198 RYPNLLVVQTFSKSRSLAGLRVGFAIGHP--------------ELIEALNRVKNSFNSYPLDRLAQAGAIAAIE---DEA 260 (353)
T ss_pred hCCCEEEEEehhHhhcchhhhceeeecCH--------------HHHHHHHHhhccCCCCCcCHHHHHHHHHHhc---CHH
Confidence 0123588999999763 44459999876 3444443332111122445555555555553 221
Q ss_pred ChhhHHHHhhhhHHHHHhhccCC
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.+++.+++.++..+++.+.|++.
T Consensus 261 ~~~~~~~~~~~~~~~l~~~L~~~ 283 (353)
T PRK05387 261 YFEETRAKVIATRERLVEELEAL 283 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Confidence 35666777777788888888776
No 213
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.67 E-value=7.9e-15 Score=134.62 Aligned_cols=234 Identities=13% Similarity=0.121 Sum_probs=137.7
Q ss_pred CCCchhHHHHHHHHHHHHHHH-cCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEA-FRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI 99 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~-~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~ 99 (297)
|+......++++.+.+++.+. .++++++ |++|+|++ ++..++.+++++||+|+++...|...... .
T Consensus 62 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~----i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~--------~ 129 (397)
T PRK07568 62 YSHSQGIPELREAFAKYYKKWGIDVEPDE----ILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGF--------A 129 (397)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCCcce----EEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHH--------H
Confidence 444556677775544444321 1355553 88888884 55557777889999999988554433211 1
Q ss_pred ceeeeeeEeeecccCCCC-Cc-CCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 100 SAVSIFFETMPYRLNEST-GY-IDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~-~~-~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
+..|..+..+ +.+.++ .. .|++.+++.+++ ++++|++ +++| +|.+.+ +++|.++|+++|+++|+|+++..
T Consensus 130 ~~~g~~~~~v--~~~~~~g~~~~~~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~ 206 (397)
T PRK07568 130 TSAGVKIVPV--TTKIEEGFHLPSKEEIEKLITP-KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYRE 206 (397)
T ss_pred HHcCCEEEEe--ecCcccCCCCCCHHHHHHhcCc-cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchh
Confidence 2233334344 443222 23 367999999887 8898887 7877 897765 67899999999999999999653
Q ss_pred ccccccCCCC--CCCC-cc--EEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchH
Q 022463 173 GLVAAGVIPS--PFEY-AD--VVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNH 245 (297)
Q Consensus 173 g~~~~~~~~~--~~~~-~D--~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~ 245 (297)
-......... .+.+ .| +++.|++|.++ |.+-|++++.++ ++.+.+....... .+++..
T Consensus 207 ~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~-------------~~~~~~~~~~~~~--~~~s~~ 271 (397)
T PRK07568 207 FVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNK-------------ELIAAAMKLCQAR--LSPPTL 271 (397)
T ss_pred cccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCH-------------HHHHHHHHHhhcc--CCCCcH
Confidence 2111100000 0111 22 67889999875 334499887542 2333322211111 123334
Q ss_pred HHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 246 TITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 246 ~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
...++..+++.. +. .++++++..++..+.+.+.|++.+.+
T Consensus 272 ~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~L~~~~~~ 311 (397)
T PRK07568 272 EQIGAAALLDTP-ES-YFDEVREEYKKRRDILYEELNKIPGV 311 (397)
T ss_pred HHHHHHHHhhCC-HH-HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444545555421 12 45566667777778888888776543
No 214
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.66 E-value=1.1e-14 Score=134.07 Aligned_cols=180 Identities=22% Similarity=0.193 Sum_probs=118.6
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
...|+.......+++.+.+++.+.+|. ++++ +|++|+|++ +...++.++++|||.|+++++.|+.....
T Consensus 64 ~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~---~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----- 135 (403)
T PRK08636 64 THGYSVSKGIYKLRLAICNWYKRKYNVDLDPET---EVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQA----- 135 (403)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---eEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH-----
Confidence 345666677788898888888777775 4431 399999994 66668888999999999998666555332
Q ss_pred ccccceeeeeeEeeecccCCCCCcCCHHHH----HHHhhh--cCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEE
Q 022463 96 TKKISAVSIFFETMPYRLNESTGYIDYDQL----EKSATL--FRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIM 164 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l----~~~l~~--~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~l 164 (297)
+...|.++..++++.+ +++.+|++.+ ++.++. .+++++++ +++| +|.+.+. ++|.++|++|++++
T Consensus 136 ---~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~I 211 (403)
T PRK08636 136 ---FILAGGNVHKMPLEYN-EDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYI 211 (403)
T ss_pred ---HHhcCCEEEEEecccc-ccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEE
Confidence 3334444544544333 3467888754 555543 26777777 5778 8977765 57788899999999
Q ss_pred EEehhhhcccccccCCCCC---CC-Ccc--EEEecCCccC--CCCCceEEEEecC
Q 022463 165 LADMAHISGLVAAGVIPSP---FE-YAD--VVTTTTHKSL--RGPRGAMIFFRKG 211 (297)
Q Consensus 165 ivD~a~~~g~~~~~~~~~~---~~-~~D--~~~~s~~K~l--~gp~gG~i~~~~~ 211 (297)
|+|+++.--... +....+ ++ ..| +++.|++|.+ .|-+-|+++.+++
T Consensus 212 I~De~Y~~l~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~ 265 (403)
T PRK08636 212 ISDIAYADITFD-GYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKK 265 (403)
T ss_pred EEeccchhhccC-CCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHH
Confidence 999996532211 100011 11 123 4478999987 3444499988774
No 215
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.66 E-value=7.4e-15 Score=135.06 Aligned_cols=234 Identities=12% Similarity=-0.016 Sum_probs=143.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCC--CCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~--~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++++.+|.+ ++ +|++|+|+ ++...++.+++++||.|+++.+.|........
T Consensus 65 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~----~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~----- 135 (402)
T PRK06107 65 KYTLVNGTPALRKAIIAKLERRNGLHYADN----EITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVL----- 135 (402)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCChh----hEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHH-----
Confidence 35555677788888888898888874 43 49999998 46655777789999999999865554432211
Q ss_pred ccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccH---HHHHHHHHhc-CCEEEEehhh
Q 022463 98 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDY---ERIRKVCNKQ-KAIMLADMAH 170 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~-g~~livD~a~ 170 (297)
..+... ++++.+. +++.+|++.+++.+.+ +++++++ +++| +|...+. ++|.++|+++ ++++|+|+++
T Consensus 136 ---~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y 209 (402)
T PRK06107 136 ---ANDGTP--VIVACPEEQGFKLTPEALEAAITP-RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIY 209 (402)
T ss_pred ---HcCCEE--EEecCCcccCCCCCHHHHHhhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 112112 3334432 3467899999999876 8888888 6888 8977765 5777888998 9999999987
Q ss_pred hcccccccCCCC--CC----CCccEEEecCCccCCCCCc--eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCC
Q 022463 171 ISGLVAAGVIPS--PF----EYADVVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGP 242 (297)
Q Consensus 171 ~~g~~~~~~~~~--~~----~~~D~~~~s~~K~l~gp~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~ 242 (297)
+--.......+. .. ..--+++.|++|.++.|.- |+++.+++ +.+.+....... ..++
T Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~--------------~~~~~~~~~~~~-~~~~ 274 (402)
T PRK06107 210 DHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPAD--------------LIAAINKLQSQS-SSCP 274 (402)
T ss_pred cccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHH--------------HHHHHHHHHHhc-ccCC
Confidence 521111100000 00 0123667888998743333 99988773 344333322111 1234
Q ss_pred chHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 243 HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 243 ~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+.+..+++..+|+.- +. -+++.++..++..+.+.+.|++.+.
T Consensus 275 s~~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~L~~~~g 316 (402)
T PRK06107 275 SSISQAAAAAALNGD-QS-FVTESVAVYKQRRDYALALLNAIPG 316 (402)
T ss_pred ChHHHHHHHHHhcCC-hH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555554444311 11 2445555566667777777766543
No 216
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.66 E-value=1.1e-14 Score=133.48 Aligned_cols=233 Identities=12% Similarity=0.037 Sum_probs=140.5
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC----CCCCCcceEEecCChH-HHHHHHHHhcCCCCe--EEEecCCCCCcccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL----DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDR--IMALDLPHGGHLSHGY 92 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~----~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~--Vl~~~~~~~~~~~~~~ 92 (297)
..|+...+..++++.+.+++.+.+|. ++++ +|++|+|++ +...++.++++|||. |+++.+.+.....
T Consensus 58 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~---~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~--- 131 (393)
T TIGR03538 58 STYPTTKGLPELRQAIARWLERRFDLPTGVDPER---HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEG--- 131 (393)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCc---eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHH---
Confidence 44565666788887776777666554 4432 489999994 666677888999986 8887744433321
Q ss_pred cccccccceeeeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEE
Q 022463 93 QTDTKKISAVSIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLA 166 (297)
Q Consensus 93 ~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~liv 166 (297)
.+...|..+..+ +.+++ ++.+|++.+++++.+ +++++++ +++| +|.+.+ +++|.++|++||++||+
T Consensus 132 -----~~~~~g~~~~~v--~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 132 -----AALLAGAEPYFL--NCTAENGFLPDFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred -----HHHhcCCeEEEe--eccccCCCCCCHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 233344334344 44423 367899999999887 8999988 7888 898777 56888889999999999
Q ss_pred ehhhhcccccccCCCCC-C-----CCc-----cEEEecCCccC--CCCCceEEEEecCchhhccCCccchhhHHHHhhhc
Q 022463 167 DMAHISGLVAAGVIPSP-F-----EYA-----DVVTTTTHKSL--RGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQA 233 (297)
Q Consensus 167 D~a~~~g~~~~~~~~~~-~-----~~~-----D~~~~s~~K~l--~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (297)
|+++.--.........+ + .+. -+++.|++|.+ .|-+-|+++.+++ +.+.+...
T Consensus 204 De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~--------------l~~~~~~~ 269 (393)
T TIGR03538 204 DECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAE--------------ILKAFLRY 269 (393)
T ss_pred CcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHH--------------HHHHHHHH
Confidence 99975322110000000 0 011 16789999964 4444499988773 33333322
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 234 VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 234 ~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
... ...+.+.....++.+++ .....+++.+++.++..+.+.+.|++.
T Consensus 270 ~~~-~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (393)
T TIGR03538 270 RTY-HGCAMPIPTQLASIAAW---NDEQHVRENRALYREKFAAVLEILGQV 316 (393)
T ss_pred HHh-hccCcCHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 11122333333333333 222135556666666666677766553
No 217
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.66 E-value=2.5e-15 Score=133.50 Aligned_cols=161 Identities=20% Similarity=0.146 Sum_probs=121.4
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceee
Q 022463 24 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 103 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 103 (297)
+++..+.+| +.++++-|++. .+.+.||.++...++..++++|+.|++....|.++......+..+ + |
T Consensus 75 ~nPt~~~le----~~iaal~ga~~-----~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~---~-g 141 (409)
T KOG0053|consen 75 GNPTRDVLE----SGIAALEGAAH-----ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPK---F-G 141 (409)
T ss_pred CCCchHHHH----HHHHHHhCCce-----EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHH---h-C
Confidence 457788888 99999999986 389999997776788999999999999987787776554433221 1 1
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
+...+++. -|++++++++.+ ++++|++ +|+| +..+.|+++|.++||++|++++||.+-+.+ ....+
T Consensus 142 --ie~~~vd~------~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p---~~~~p 209 (409)
T KOG0053|consen 142 --GEGDFVDV------DDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP---YNQDP 209 (409)
T ss_pred --ceeeeech------hhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc---cccCh
Confidence 11222222 256788888887 8999999 8999 889999999999999999999999984433 12222
Q ss_pred CCCCCccEEEecCCccCCCCCc---eEEEEec
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG---AMIFFRK 210 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~ 210 (297)
+++ |||+++.|..|+|+|-.. |.++.+.
T Consensus 210 L~l-GADIV~hSaTKyi~Ghsdvi~G~iv~n~ 240 (409)
T KOG0053|consen 210 LPL-GADIVVHSATKYIGGHSDVIGGSVVLNS 240 (409)
T ss_pred hhc-CCCEEEEeeeeeecCCcceeeeEEecCc
Confidence 221 799999999999988443 7777763
No 218
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.66 E-value=2.8e-15 Score=136.12 Aligned_cols=211 Identities=15% Similarity=0.060 Sum_probs=137.5
Q ss_pred HHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccC
Q 022463 36 QKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 114 (297)
Q Consensus 36 ~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 114 (297)
|+.+++++++++++ |++++|++ +...++.+++++||+|+++.+.|...... ....|..+..+ +.
T Consensus 73 r~~ia~~~~~~~~~----i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~--------~~~~g~~~~~~--~~- 137 (367)
T PRK02731 73 KAALAEKFGVDPER----IILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIA--------AQAVGAKPVEV--PA- 137 (367)
T ss_pred HHHHHHHhCcCHHH----EEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHH--------HHHcCCeEEEe--cc-
Confidence 38888899998754 99999996 44446677889999999988665433111 12233334333 34
Q ss_pred CCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc--CCEEEEehhhhcccccccCCCCCC-----C
Q 022463 115 ESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPF-----E 185 (297)
Q Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~--g~~livD~a~~~g~~~~~~~~~~~-----~ 185 (297)
+++.+|++++++.+++ ++++|++ +++| +|.+.|.+++.++++.. |+++|+|+++........ ...++ .
T Consensus 138 -~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~ 214 (367)
T PRK02731 138 -KDYGHDLDAMLAAVTP-RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKD-YEDGLELVAKF 214 (367)
T ss_pred -cCCCCCHHHHHHHhCC-CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcC-cccHHHHHhhc
Confidence 3567899999999986 8999988 7888 89999999999999875 899999999754332110 00000 0
Q ss_pred CccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcCh
Q 022463 186 YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITF 263 (297)
Q Consensus 186 ~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~ 263 (297)
.-.+++.|++|.++ |.+-|+++.+++ +.+.+.....+. +.+..... +++..+.....+
T Consensus 215 ~~~i~~~S~SK~~g~~G~RiG~l~~~~~--------------~~~~l~~~~~~~---~~~~~~~~---~a~~~l~~~~~~ 274 (367)
T PRK02731 215 PNVVVTRTFSKAYGLAGLRVGYGIAPPE--------------IIDALNRVRQPF---NVNSLALA---AAVAALDDDAFV 274 (367)
T ss_pred CCEEEEeeehHhhcCcccceeeeeCCHH--------------HHHHHHHccCCC---CCCHHHHH---HHHHHhCCHHHH
Confidence 12366778999763 333399998873 444444322111 22333333 334444433246
Q ss_pred hhHHHHhhhhHHHHHhhccCC
Q 022463 264 SHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 264 ~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++++++.+++.+++.+.|++.
T Consensus 275 ~~~~~~~~~~~~~l~~~L~~~ 295 (367)
T PRK02731 275 EKSRALNAEGMAWLTEFLAEL 295 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 777888888888888888776
No 219
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.66 E-value=8.9e-15 Score=134.47 Aligned_cols=239 Identities=13% Similarity=0.017 Sum_probs=138.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHc-CCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAF-RLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI 99 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~-g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~ 99 (297)
|+......++++.+.+++.+.- .++++ +|++++|++ ++..++.+++++||+|+++...+..... .+
T Consensus 69 Y~~~~g~~~lr~aia~~~~~~~~~~~~~----~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~--------~~ 136 (401)
T TIGR01264 69 YAPTVGALSAREAIASYYHNPDGPIEAD----DVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYET--------LA 136 (401)
T ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHH----HEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHH--------HH
Confidence 4444556777744444443311 14554 388999984 6666788889999999998865443322 12
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhccc
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGL 174 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~g~ 174 (297)
...|..+..++++.+ +++.+|++.+++.+++ +++++++ +++| +|.+.+ +++|.++|+++|+++|+|+++.--.
T Consensus 137 ~~~g~~v~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 137 ESMGIEVKLYNLLPD-KSWEIDLKQLESLIDE-KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMV 214 (401)
T ss_pred HHcCCEEEEeecCCc-cCCCCCHHHHHHHhcc-CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence 233433434433222 3578999999998876 7888888 7877 887765 6788889999999999999965221
Q ss_pred ccccCCCCCC---CC-c-cEEEecCCccCCC--CCceEEEEecCc-hhhccCCccchhhHHHHhhhcccCCCCCCCchHH
Q 022463 175 VAAGVIPSPF---EY-A-DVVTTTTHKSLRG--PRGAMIFFRKGV-KEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHT 246 (297)
Q Consensus 175 ~~~~~~~~~~---~~-~-D~~~~s~~K~l~g--p~gG~i~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~ 246 (297)
.. +....++ .. . -+++.|++|.++. -+-|+++..+.. ... ...+.+.....+ ..+++.+.
T Consensus 215 ~~-~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~~~ 282 (401)
T TIGR01264 215 FS-GATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILR---------DIRDGLVKLSQR--ILGPCTIV 282 (401)
T ss_pred cC-CcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHH---------HHHHHHHHHhhc--cCCCCcHH
Confidence 11 1000111 11 1 2678899997433 334999986421 000 122222221111 11223344
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
..++..+|+...+. -+++.+++.++..+++.+.|++++.+
T Consensus 283 q~a~~~~l~~~~~~-~l~~~~~~~~~~r~~l~~~L~~~~~~ 322 (401)
T TIGR01264 283 QGALPSILLRTPQE-YFDGTLSVLESNAMLCYGALAAVPGL 322 (401)
T ss_pred HHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44444444321112 35556666666777777777776543
No 220
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.66 E-value=4.9e-15 Score=135.18 Aligned_cols=219 Identities=13% Similarity=0.037 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..+++ +.+++++++++++ |++++|++ +...++.+++++||+|+++.+.++... ..+...|.++
T Consensus 88 ~~~lr----~~ia~~~~~~~~~----I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~--------~~~~~~g~~~ 151 (380)
T PLN03026 88 SRRLR----AALAEDSGLESEN----ILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYV--------FDAAVNGAEV 151 (380)
T ss_pred HHHHH----HHHHHHhCcChhh----EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH--------HHHHHcCCEE
Confidence 45566 8889999998764 99999995 555577778899999999885543221 1122334334
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 184 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~ 184 (297)
..+ +.+ +++.+|++++++.+...++++|++ +++| +|.+.|.+++.++++.. +++|+|+++.-- ...+......
T Consensus 152 ~~v--~~~-~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~-~~~~~~~~~~ 226 (380)
T PLN03026 152 IKV--PRT-PDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEF-STQESRMKWV 226 (380)
T ss_pred EEe--ecC-CCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhh-cCCcchHHHH
Confidence 344 444 457899999999984338999998 7888 89999999999999865 899999997421 1100000000
Q ss_pred C--CccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhh
Q 022463 185 E--YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 260 (297)
Q Consensus 185 ~--~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~ 260 (297)
. .-.+++.|++|.++ |-+-|+++.++ ++.+.+.....+ .+.+.+...++.++|+. .
T Consensus 227 ~~~~~viv~~SfSK~~glaGlRiGy~~~~~--------------~~i~~l~~~~~~---~~~~~~~q~aa~~aL~~---~ 286 (380)
T PLN03026 227 KKYDNLIVLRTFSKRAGLAGLRVGYGAFPL--------------SIIEYLWRAKQP---YNVSVAAEVAACAALSN---P 286 (380)
T ss_pred HhCCCEEEEecchHhhcCccccceeeecCH--------------HHHHHHHHhcCC---CCCCHHHHHHHHHHhhC---H
Confidence 0 23478899999763 23339999877 344444433222 12344444555555532 1
Q ss_pred cChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 261 ITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 261 ~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
.-+++.++..++..+++.+.|++++.+
T Consensus 287 ~~~~~~~~~~~~~r~~l~~~L~~~~~~ 313 (380)
T PLN03026 287 KYLEDVKNALVEERERLFGLLKEVPFL 313 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 134556666777778888888877643
No 221
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.66 E-value=2.8e-15 Score=135.88 Aligned_cols=210 Identities=12% Similarity=-0.002 Sum_probs=134.2
Q ss_pred HHHHHHHHcCCCCCCCcceEEe-cCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecc
Q 022463 35 CQKRALEAFRLDPEKWGVNVQS-LSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 112 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~-~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 112 (297)
.|+.+++++++++++ +++ ++|++ ++..++++++++||.|+++...+..... .++..|..+..+ +
T Consensus 74 lr~~ia~~~~~~~~~----i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~~~~~--~ 139 (361)
T PRK00950 74 LREALSKYTGVPVEN----IIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEI--------SAKAHGAKPVYA--K 139 (361)
T ss_pred HHHHHHHHhCCCHHH----EEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCEEEEe--e
Confidence 338888999998764 777 78885 5445677778999999998754433211 122334334333 4
Q ss_pred cCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCc--c
Q 022463 113 LNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYA--D 188 (297)
Q Consensus 113 ~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~--D 188 (297)
.+ .++.+|++++++.+++ +++++++ +++| +|.+.|.+++.++|+++|+++|+|+++..-. ....... .... -
T Consensus 140 ~~-~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~-~~~~~~v 215 (361)
T PRK00950 140 RE-EDFSLDVDSVLNAITE-KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-EYDYTPL-ALEYDNL 215 (361)
T ss_pred cC-CCCCcCHHHHHHHhcc-CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-ccchHHH-HHhcCCE
Confidence 34 4568999999999876 8899888 7777 8999999999999999999999999985322 1111000 0011 2
Q ss_pred EEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhH
Q 022463 189 VVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHI 266 (297)
Q Consensus 189 ~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~ 266 (297)
+++.|++|.++.|. -|+++.+++ +.+.+.....+. +.+.+..+++..+ +.+..-+++.
T Consensus 216 i~~~S~SK~~g~~GlRiG~~~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~a~~~---l~~~~~~~~~ 275 (361)
T PRK00950 216 IIGRTFSKVFGLAGLRIGYGFVPEW--------------LIDYYMRAKTPF---SLTRLSQAAAIAA---LSDKEYIEKS 275 (361)
T ss_pred EEEEeehHhhcCchhhcchhcCCHH--------------HHHHHHHhcCCC---CCCHHHHHHHHHH---hcCHHHHHHH
Confidence 56789999874333 388888763 344343322111 2233333333333 3333135666
Q ss_pred HHHhhhhHHHHHhhcc
Q 022463 267 HVFSLHVYPAFVSNQN 282 (297)
Q Consensus 267 ~~~~~~l~~~l~~~l~ 282 (297)
+++.+...+++.+.|+
T Consensus 276 ~~~~~~~r~~l~~~l~ 291 (361)
T PRK00950 276 IEHGIKSREYLYNELP 291 (361)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 6777777777877775
No 222
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.65 E-value=1.6e-14 Score=135.64 Aligned_cols=180 Identities=12% Similarity=0.120 Sum_probs=121.9
Q ss_pred CCCccCCCchhHHHHHHHHHHHHHHHcC----CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccc
Q 022463 17 PGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHG 91 (297)
Q Consensus 17 ~~~~~~~~~~~~~~~e~~~~~~la~~~g----~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~ 91 (297)
+....|++..+..++++.+.+++.+.+| +++++ |++|+|++ ++..++.++++|||.|+++.+.|+.+....
T Consensus 85 ~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~----Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~ 160 (496)
T PLN02376 85 SDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPER----VVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDL 160 (496)
T ss_pred chhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhh----EEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHH
Confidence 4444566667778899888888888766 66764 99999994 666688889999999999987766664321
Q ss_pred ccccccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhh-----cCCcEEEE-cCCC-CCCcccHH---HHHHHHHhc
Q 022463 92 YQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL-----FRPKLIVA-GASA-YARLYDYE---RIRKVCNKQ 160 (297)
Q Consensus 92 ~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~-----~~~~~v~~-~~~~-~G~~~~~~---~i~~la~~~ 160 (297)
. ...|..+ ++++++. +++.+|++.++.++.. .++++|++ +++| +|.+.+.+ +|.++|++|
T Consensus 161 ~-------~~~G~~v--v~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~ 231 (496)
T PLN02376 161 R-------WRTGVEI--IPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRK 231 (496)
T ss_pred H-------hhCCCEE--EEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHc
Confidence 1 0123334 4444542 3578999999876531 26888888 7888 89888754 677889999
Q ss_pred CCEEEEehhhhcccccccCCCCC---C----C----Ccc--EEEecCCccCC--CCCceEEEEec
Q 022463 161 KAIMLADMAHISGLVAAGVIPSP---F----E----YAD--VVTTTTHKSLR--GPRGAMIFFRK 210 (297)
Q Consensus 161 g~~livD~a~~~g~~~~~~~~~~---~----~----~~D--~~~~s~~K~l~--gp~gG~i~~~~ 210 (297)
++++|+|++++.-....... .+ + + ..| +++.|++|.++ |-+-|+++..+
T Consensus 232 ~i~lI~DEiY~~~~f~~~~~-~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~ 295 (496)
T PLN02376 232 NIHLVVDEIYAATVFAGGDF-VSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFN 295 (496)
T ss_pred CCEEEEEcCccccccCCCCc-ccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECC
Confidence 99999999976432211000 00 0 0 113 34689999874 34449999855
No 223
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.65 E-value=3.1e-15 Score=135.98 Aligned_cols=228 Identities=13% Similarity=0.020 Sum_probs=142.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|++ .....+++.+.+++.+.+| ++++ +|++|+|++ +...++.+++++||.|+++.+.|+.....
T Consensus 61 ~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~----~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~------- 128 (368)
T PRK03317 61 RYPD-RDAVALRADLAAYLTAQTGVGLTVE----NVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPII------- 128 (368)
T ss_pred cCCC-CchHHHHHHHHHHhhhhccCCCChh----hEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH-------
Confidence 3443 2457788666666666555 4565 499999994 66667888899999999988655544321
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLV 175 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~ 175 (297)
+...| .+.++++.+ +++.+|++++++++.+.+++++++ +++| +|.+.+.+++.++++..++++|+|++++.-..
T Consensus 129 -~~~~g--~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~ 204 (368)
T PRK03317 129 -ARGTH--TEWVEGPRA-ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRR 204 (368)
T ss_pred -HHhcC--CeeEEcccC-CCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcc
Confidence 22223 233444444 457899999999998657898888 7878 89999999999999999999999999863211
Q ss_pred cccCCCCCC-C-Ccc-EEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHH
Q 022463 176 AAGVIPSPF-E-YAD-VVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGL 250 (297)
Q Consensus 176 ~~~~~~~~~-~-~~D-~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al 250 (297)
......... . ..+ +++.|++|.++.| +-|+++.++ ++.+.+.....+ .+.+.+..+++
T Consensus 205 ~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~--------------~~~~~l~~~~~~---~~~s~~~~~a~ 267 (368)
T PRK03317 205 SGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAP--------------AVVDALRLVRLP---YHLSAVTQAAA 267 (368)
T ss_pred cCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCH--------------HHHHHHHhcCCC---CCCCHHHHHHH
Confidence 100000000 0 123 5667999987433 339998877 344444433221 12344555555
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.++|+... .+.+..++..+..+++.+.|++.
T Consensus 268 ~~~l~~~~---~~~~~~~~~~~~~~~l~~~L~~~ 298 (368)
T PRK03317 268 RAALRHAD---ELLASVAALRAERDRVVAWLREL 298 (368)
T ss_pred HHHhhCHH---HHHHHHHHHHHHHHHHHHHHHHC
Confidence 55554322 22333344455566666666654
No 224
>PRK09105 putative aminotransferase; Provisional
Probab=99.65 E-value=5.7e-15 Score=134.28 Aligned_cols=213 Identities=14% Similarity=0.040 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..+++ +.+++++|+++++ |++|+|++ +...++.+++++||+|++++++|+..... ++..|.++
T Consensus 80 ~~~Lr----~aia~~~~v~~e~----I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~--------~~~~g~~~ 143 (370)
T PRK09105 80 EDDLR----TLFAAQEGLPADH----VMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRA--------ADAQGAPV 143 (370)
T ss_pred HHHHH----HHHHHHhCcChhh----EEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHH--------HHHcCCeE
Confidence 55566 7788899998875 99999984 66567788899999999998766665332 22334334
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHh--cCCEEEEehhhhcccccccCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~--~g~~livD~a~~~g~~~~~~~~~ 182 (297)
..+ +.+ +++.+|++.+++. .+ +++++++ +++| +|.+.+.+++.++++. +++++|+|+++.. ..... ...
T Consensus 144 ~~v--~~~-~~~~~d~~~l~~~-~~-~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~-f~~~~-s~~ 216 (370)
T PRK09105 144 AKV--PLR-ADGAHDVKAMLAA-DP-NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIH-FSDAP-SVV 216 (370)
T ss_pred EEe--cCC-CCCCCCHHHHHhc-CC-CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHH-hccCc-chH
Confidence 334 454 4577899999876 44 7888888 7888 8999999988888764 4899999999742 11110 000
Q ss_pred CC--CCcc-EEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 183 PF--EYAD-VVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 183 ~~--~~~D-~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
.+ ...+ +++.|++|+++.|. -|+++.++ +..+.+... . ..+++.....+..++|+
T Consensus 217 ~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~--------------~~i~~l~~~-~---~~~~~~~~~~aa~~~L~-- 276 (370)
T PRK09105 217 DLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP--------------DLLAKLARF-G---HNPLPVPAAAAGLASLR-- 276 (370)
T ss_pred HHHhhCCCEEEEecccHhhcCCccceeeeecCH--------------HHHHHHHhc-C---CCCcCHHHHHHHHHHHh--
Confidence 00 1234 55678899873333 39999877 344444433 1 12234444444444443
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+..-++..+++.++..+++.+.|++.
T Consensus 277 -~~~~~~~~~~~~~~~r~~l~~~L~~~ 302 (370)
T PRK09105 277 -DPKLVPQRRAENAAVREDTIAWLKKK 302 (370)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33245566677777788888888765
No 225
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.65 E-value=2.1e-14 Score=132.33 Aligned_cols=174 Identities=14% Similarity=0.080 Sum_probs=115.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+......++++.+.+++.+.+| +++++ |++|+|++ +...++.+++++||.|+++.+.|+....
T Consensus 69 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~----I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~-------- 136 (409)
T PLN00143 69 SYAPTGGILPARRAIADYLSNDLPYQLSPDD----VYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVET-------- 136 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCHhh----EEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHH--------
Confidence 355555667788666677666544 45554 99999984 6666888889999999999866555432
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
.+...|..+..++.. +.+++.+|++++++++++ +++++++ +++| +|.+.+ +++|.++|++|++++|+|+++.-
T Consensus 137 ~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~~~~-~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~ 214 (409)
T PLN00143 137 YAIFHHLEIRHFDLL-PEKGWEVDLDAVEAIADE-NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGH 214 (409)
T ss_pred HHHHcCCEEEEEecc-CCCCCcCCHHHHHHhccc-CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 122334334444331 124567899999998876 7887777 7888 898877 56788889999999999999653
Q ss_pred ccccccCCCCC---CCCc--cEEEecCCccCCCC--CceEEEEe
Q 022463 173 GLVAAGVIPSP---FEYA--DVVTTTTHKSLRGP--RGAMIFFR 209 (297)
Q Consensus 173 g~~~~~~~~~~---~~~~--D~~~~s~~K~l~gp--~gG~i~~~ 209 (297)
-... +....+ +... =+++.|++|.++.| +-|++++.
T Consensus 215 l~~~-~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~ 257 (409)
T PLN00143 215 IVFG-SKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTC 257 (409)
T ss_pred cccC-CCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEee
Confidence 2111 101011 1111 26778999985443 33999984
No 226
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.65 E-value=2.5e-15 Score=139.91 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=123.5
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
..+|+......++++.+.+++....| +++++ |++|+|++ ++..+++.+++|||.|++.+++|.+......
T Consensus 125 ~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~----IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~--- 197 (459)
T COG1167 125 ALQYGPTAGLPELREAIAAYLLARRGISCEPEQ----IVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALE--- 197 (459)
T ss_pred hhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCe----EEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH---
Confidence 34555657788888877777764444 45554 99999994 6666888889999999988866665544322
Q ss_pred ccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE--cCCC-CCCcccHH---HHHHHHHhcCCEEEEehh
Q 022463 96 TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA--GASA-YARLYDYE---RIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~--~~~~-~G~~~~~~---~i~~la~~~g~~livD~a 169 (297)
..| ++.++++.| +..+|+|.++..+..+++|++++ +.+| +|...+.+ +|.++|++|++++|+|..
T Consensus 198 -----~~g--~~~~~vp~d--~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~ 268 (459)
T COG1167 198 -----ALG--ARVIPVPVD--EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDY 268 (459)
T ss_pred -----HcC--CcEEecCCC--CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCc
Confidence 223 233444555 45689999999999878999999 4666 78888765 999999999999999998
Q ss_pred hhcccccccCCCCCCC-----CccEEEecCCccCC-CCCceEEEEecC
Q 022463 170 HISGLVAAGVIPSPFE-----YADVVTTTTHKSLR-GPRGAMIFFRKG 211 (297)
Q Consensus 170 ~~~g~~~~~~~~~~~~-----~~D~~~~s~~K~l~-gp~gG~i~~~~~ 211 (297)
.+--.... ....++. +-=+++.|++|.|. |.+-|+|+..++
T Consensus 269 y~el~~~~-~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~ 315 (459)
T COG1167 269 YGELRYDG-PPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPE 315 (459)
T ss_pred chhhhcCC-CCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHH
Confidence 54322111 1111111 22378899999873 333499999884
No 227
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.65 E-value=5.5e-15 Score=133.89 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
...+++ +.+++++++++++ |++++|++ +...++.+++++||.|+++.++++.... .+...|.+
T Consensus 65 g~~~lr----~~ia~~~~~~~~~----i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~--------~~~~~g~~ 128 (359)
T PRK03158 65 YAPELR----TKVAKHLGVDEEQ----LLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRH--------NAIIEGAE 128 (359)
T ss_pred cHHHHH----HHHHHHhCCCHHH----EEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH--------HHHHcCCe
Confidence 344555 8888888988764 99999995 5555677888999999998866554322 12223433
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHh--cCCEEEEehhhhcccccccCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~--~g~~livD~a~~~g~~~~~~~~ 181 (297)
+..++ .+ ++.+|++.+++.+++ +++++++ +++| +|...|.+++.++++. +|+++|+|+++....... ..+
T Consensus 129 ~~~~~--~~--~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~-~~~ 202 (359)
T PRK03158 129 VREVP--LK--DGGHDLEAMLKAIDE-QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAE-DYP 202 (359)
T ss_pred EEEEe--cC--CCCcCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCc-ccc
Confidence 44444 43 457899999998877 8999988 7888 8999999999999887 599999999975432211 111
Q ss_pred CCC-----CCccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHH
Q 022463 182 SPF-----EYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 254 (297)
Q Consensus 182 ~~~-----~~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al 254 (297)
.++ ..-.+++.|++|.++ |.+-|+++.++ ++.+.+.....+ ...+.+...++..++
T Consensus 203 ~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--------------~~~~~~~~~~~~---~~~~~~~q~~~~~~l 265 (359)
T PRK03158 203 DTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE--------------ELIEKLNIARPP---FNTTRIAQYAAIAAL 265 (359)
T ss_pred cHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH--------------HHHHHHHHhcCC---CCCCHHHHHHHHHHh
Confidence 100 023577889999874 33349999877 344444433222 123445555554545
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+ +..-.+++++..+...+++.+.|++.
T Consensus 266 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 292 (359)
T PRK03158 266 E---DQAFLKECVEKNAEGLEQYYAFCKEY 292 (359)
T ss_pred c---CHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3 22124455555666666777777665
No 228
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.65 E-value=1.3e-14 Score=134.60 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=138.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI 99 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~ 99 (297)
.|++.....++++.+.+++.+..+ +++ +|++|+|++ +...++.++++|||.|+++.+.|+.... .+
T Consensus 116 ~Y~~~~g~~~lr~~ia~~~~~~~~-~~~----~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~--------~~ 182 (431)
T PRK15481 116 LYGDAPVSPELHAWAARWLRDDCP-VAF----EIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSIN--------ML 182 (431)
T ss_pred hcCCcCCCHHHHHHHHHHHhhccC-CcC----eEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HH
Confidence 455556666777444444433222 222 499999994 6666888889999999999866555533 23
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE--cCCC-CCCcccHH---HHHHHHHhc-CCEEEEehhhhc
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA--GASA-YARLYDYE---RIRKVCNKQ-KAIMLADMAHIS 172 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~--~~~~-~G~~~~~~---~i~~la~~~-g~~livD~a~~~ 172 (297)
...|..+..+ +.+ ++ .+|++.+++++++ +++++++ +++| +|.+.+.+ +|.++|+++ ++++|+|+++.-
T Consensus 183 ~~~g~~~~~v--~~~-~~-g~~~~~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~ 257 (431)
T PRK15481 183 RYAGFSASPV--SVD-AE-GMQPEKLERALAQ-GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFAL 257 (431)
T ss_pred HHcCCeEEee--ccC-CC-CCCHHHHHHHHhc-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhh
Confidence 3344334444 454 23 4899999999987 8998877 5777 89888876 899999999 999999998652
Q ss_pred ccccccCCCCCCC-CccEEEecCCccCCCCCc--eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHH
Q 022463 173 GLVAAGVIPSPFE-YADVVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITG 249 (297)
Q Consensus 173 g~~~~~~~~~~~~-~~D~~~~s~~K~l~gp~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a 249 (297)
-.........+.. .--+++.|++|.++ |.- |+++.+++ +.+.+....... ..+.+.+...+
T Consensus 258 ~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~--------------~~~~~~~~~~~~-~~~~s~~~q~a 321 (431)
T PRK15481 258 LSSSPYHSVIPQTTQRWALIRSVSKALG-PDLRLAFVASDSA--------------TSARLRLRLNSG-TQWVSHLLQDL 321 (431)
T ss_pred hccCCCCCCCcCCCCCEEEEeeeccccC-CCceeEEEeCCHH--------------HHHHHHHHHhcc-ccCCCHHHHHH
Confidence 2111000001101 12377899999886 533 99888773 344443221111 12234444444
Q ss_pred HHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 250 LAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 250 l~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+..+|+.-.-..-+++.++..++..+++.+.|++.
T Consensus 322 ~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~ 356 (431)
T PRK15481 322 VYACLTDPEYQARLAQARLFYAQRRQKLARALQQY 356 (431)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444321000014456666677777777777664
No 229
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.64 E-value=1.8e-14 Score=132.56 Aligned_cols=238 Identities=14% Similarity=0.034 Sum_probs=138.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 98 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~ 98 (297)
|+......++++.+.+.+....+. +++ ++++|+|+ ++...++.++..+||+|+++..+|......
T Consensus 69 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~----~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-------- 136 (403)
T TIGR01265 69 YAPSVGALAAREAVAEYLSSDLPGKLTAD----DVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTR-------- 136 (403)
T ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCHH----HEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHH--------
Confidence 434455666774444444332232 344 38888887 466668888889999999998665543221
Q ss_pred cceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 99 ISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 99 ~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
+...|..+..+ +.++ +++.+|++.+++.+++ +++++++ +++| +|.+.+ +++|.++|+++|+++|+|+++.-
T Consensus 137 ~~~~g~~~~~~--~~~~~~~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~ 213 (403)
T TIGR01265 137 AAFSGLEVRLY--DLLPEKDWEIDLDGLEALADE-KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGH 213 (403)
T ss_pred HHHcCCEEEEe--cCCcccCCccCHHHHHHHhCc-CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 22223334334 3332 3568999999999876 7888888 7777 898775 78899999999999999999652
Q ss_pred ccccccCCCCCC---C-Cc-cEEEecCCccCCCCCc--eEEEEecC--chhhccCCccchhhHHHHhhhcccCCCCCCCc
Q 022463 173 GLVAAGVIPSPF---E-YA-DVVTTTTHKSLRGPRG--AMIFFRKG--VKEINKQGKEVFYDYEEKINQAVFPGLQGGPH 243 (297)
Q Consensus 173 g~~~~~~~~~~~---~-~~-D~~~~s~~K~l~gp~g--G~i~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~ 243 (297)
-....... .++ . .. =+++.|++|.++.|.- |+++..+. .... .+.+.+..... ....++
T Consensus 214 ~~~~~~~~-~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~---------~~~~~~~~~~~--~~~~~~ 281 (403)
T TIGR01265 214 MVFGDAPF-IPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRD---------TVLQGLKNLLQ--RILGPA 281 (403)
T ss_pred cccCCCCc-cchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHH---------HHHHHHHHHhh--hhcCCC
Confidence 22111000 011 1 11 2567899998655433 99988531 1000 11222222110 011234
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
.+...++..+++...+. -+++.+++.++..+++.+.|+..+.+
T Consensus 282 ~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (403)
T TIGR01265 282 TIVQGALPDILENTPQE-FFDGKISVLKSNAELCYEELKDIPGL 324 (403)
T ss_pred hHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44445555555431112 34556666666677787888776544
No 230
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.64 E-value=6.6e-15 Score=133.21 Aligned_cols=220 Identities=14% Similarity=0.081 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..+++ +.++++++.+.++ +|++++|++ +...++.+++++||+|+++.+.|..... .++..|..+
T Consensus 65 ~~~lr----~~ia~~~~~~~~~---~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~ 129 (356)
T PRK04870 65 AAALK----AALRAAMGVPAGA---DVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRM--------SAKLAGLEF 129 (356)
T ss_pred HHHHH----HHHHHHhCcCCCC---cEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHH--------HHHHcCCEE
Confidence 45666 8888888986532 499999995 5555677778999999998855444322 233344334
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 184 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~ 184 (297)
++++.+ +++.+|++.+++.+.+.++++|++ +++| +|.+.+.+++.++++..++++|+|+++.. .......+ ..
T Consensus 130 --~~i~~~-~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~-~~~~~~~~-~~ 204 (356)
T PRK04870 130 --VGVPLT-ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQP-FAGDSWLP-RL 204 (356)
T ss_pred --EEecCC-CCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchh-hcCcchHH-HH
Confidence 444555 457899999999997558999999 6878 89999999999888877889999998642 11101000 00
Q ss_pred C--CccEEEecCCcc-CCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 185 E--YADVVTTTTHKS-LRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 185 ~--~~D~~~~s~~K~-l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
. .--+++.|++|+ +.|.+-|+++.++ ++.+.+.....+ .+.+.+...+...+++.. .
T Consensus 205 ~~~~~vi~~~S~SK~~~~GlRiG~~i~~~--------------~~i~~~~~~~~~---~~~~~~~q~~a~~~l~~~--~- 264 (356)
T PRK04870 205 ARFPNLLVMRTVSKLGLAGLRLGYLAGHP--------------AWIAELDKVRPP---YNVNVLTQATALFALEHV--D- 264 (356)
T ss_pred hhCCCEEEEecchhhhhHHHhhhhhhCCH--------------HHHHHHHHccCC---CcCCHHHHHHHHHHHhCH--H-
Confidence 1 123678899992 1233349998876 344444433221 123334444444444321 1
Q ss_pred ChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
.+++..++.++.++++.+.|++++.+
T Consensus 265 ~~~~~~~~~~~~~~~l~~~L~~~~~~ 290 (356)
T PRK04870 265 VLDAQAAQLRAERTRLAAALAALPGV 290 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 35666677777888888888777654
No 231
>PRK03321 putative aminotransferase; Provisional
Probab=99.64 E-value=4.4e-15 Score=134.16 Aligned_cols=217 Identities=12% Similarity=0.048 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
...+++ +.+++++++++++ |++++|++ ++..++..+++|||.|+++...+..... .++..|..
T Consensus 58 g~~~lr----~~ia~~~~~~~~~----I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~--------~~~~~g~~ 121 (352)
T PRK03321 58 GAVELR----AALAEHLGVPPEH----VAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPI--------LVQVAGAT 121 (352)
T ss_pred cHHHHH----HHHHHHhCcCHHH----EEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHH--------HHHHcCCE
Confidence 455666 8888899988754 99999995 5555677788999999987644332211 12223333
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHh--cCCEEEEehhhhcccccccCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~--~g~~livD~a~~~g~~~~~~~~ 181 (297)
+ ++++.+ .++.+|++.+++.+++ +++++++ +++| +|.+.|.+++.++|+. +++++|+|+++..-... +...
T Consensus 122 ~--~~v~~~-~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~-~~~~ 196 (352)
T PRK03321 122 P--VQVPLT-PDHTHDLDAMAAAITD-RTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRD-DDVP 196 (352)
T ss_pred E--EEccCC-CCCCCCHHHHHHhhcc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccC-cCCC
Confidence 3 444555 3467899999999987 8999988 7777 8999999999999987 59999999997532211 1000
Q ss_pred CCC---C-Ccc-EEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHH
Q 022463 182 SPF---E-YAD-VVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 254 (297)
Q Consensus 182 ~~~---~-~~D-~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al 254 (297)
.++ . ..+ +++.|++|.++ |-+.|+++.++ ++.+.+..... ..+.+.+...++.+++
T Consensus 197 ~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--------------~~~~~~~~~~~---~~~~s~~~q~~a~~~l 259 (352)
T PRK03321 197 DGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP--------------EVIAALRKVAV---PFSVNSLAQAAAIASL 259 (352)
T ss_pred cHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH--------------HHHHHHHHhcC---CCCCCHHHHHHHHHHh
Confidence 000 0 122 56779999874 33349999876 34454443321 2234445544444555
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.... .+.+..++..+..+++.+.|++.
T Consensus 260 ~~~~---~~~~~~~~~~~~r~~~~~~L~~~ 286 (352)
T PRK03321 260 AAED---ELLERVDAVVAERDRVRAALRAA 286 (352)
T ss_pred cCHH---HHHHHHHHHHHHHHHHHHHHHHC
Confidence 3211 12222223333445566666654
No 232
>PRK09148 aminotransferase; Validated
Probab=99.64 E-value=2.4e-14 Score=131.78 Aligned_cols=233 Identities=15% Similarity=0.107 Sum_probs=136.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+......++++.+.+++.+.+|. ++++ +|++|+|++ +...++.+++++||.|+++..+|+......
T Consensus 62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~----- 133 (405)
T PRK09148 62 HRYSASKGIPGLRRAQAAYYARRFGVKLNPDT---QVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGF----- 133 (405)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHH-----
Confidence 34555566778887777777766564 4541 399999994 666678888999999999987766653322
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEehh
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~a 169 (297)
...|..+..++ .+.++. +++++++.+.. .+++++++ +++| +|.+.+. ++|.++|++||+++|+|++
T Consensus 134 ---~~~g~~v~~v~--~~~~~~--~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~ 206 (405)
T PRK09148 134 ---IMAGGVIRSVP--AEPDEE--FFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLA 206 (405)
T ss_pred ---HhcCCEEEEEe--CCCCCC--CccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecc
Confidence 22343344444 432221 23344444432 26788888 6788 8988876 5788889999999999999
Q ss_pred hhcccccccCCC--CCCC---CccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCC
Q 022463 170 HISGLVAAGVIP--SPFE---YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGP 242 (297)
Q Consensus 170 ~~~g~~~~~~~~--~~~~---~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~ 242 (297)
+..-........ ..+. ...+++.|++|.++.| +-|+++.++ ++.+.+...... ...++
T Consensus 207 Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~--------------~~i~~l~~~~~~-~~~~~ 271 (405)
T PRK09148 207 YSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNE--------------RLIAALTRVKSY-LDYGA 271 (405)
T ss_pred chhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCH--------------HHHHHHHHHHHH-hccCC
Confidence 753221110000 0011 2235689999977433 349999876 344444332111 01122
Q ss_pred chHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 243 HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 243 ~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+.+...++..+|+.- +. -+++.++..++..+++.+.|++.
T Consensus 272 ~~~~q~~~~~~L~~~-~~-~~~~~~~~~~~~r~~l~~~L~~~ 311 (405)
T PRK09148 272 FTPIQVAATAALNGP-QD-CIAEMRELYKKRRDVLVESFGRA 311 (405)
T ss_pred ChHHHHHHHHHHhCc-HH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333211 11 34556666677777777777664
No 233
>PRK08175 aminotransferase; Validated
Probab=99.64 E-value=2.7e-14 Score=131.05 Aligned_cols=232 Identities=14% Similarity=0.091 Sum_probs=141.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+......++++.+.+++.+.+|. ++++ ++++|+|++ +...++..+++|||+|+++.+.|+.+....
T Consensus 61 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----- 132 (395)
T PRK08175 61 HGYSTSRGIPRLRRAISRWYQDRYDVDIDPES---EAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGA----- 132 (395)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH-----
Confidence 44555567788998777887776565 4431 399999994 554577788999999999987766553322
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEehh
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~a 169 (297)
...|..+..+ +.+.+ ..+.+++++++++ .+++++++ +++| +|.+.+. ++|.++|++||+++|+|++
T Consensus 133 ---~~~g~~~~~v--~~~~~--~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~ 205 (395)
T PRK08175 133 ---VIAGAQVRSV--PLVEG--VDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLA 205 (395)
T ss_pred ---HHcCCeEEEE--ecccC--CCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 2233334334 44422 2357888888874 26888888 5778 8988887 6888999999999999999
Q ss_pred hhcccccccCCCCC---CC---CccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC
Q 022463 170 HISGLVAAGVIPSP---FE---YADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG 241 (297)
Q Consensus 170 ~~~g~~~~~~~~~~---~~---~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 241 (297)
+..-... +....+ +. +..+++.|++|.++.|. .|+++.+++ +.+.+....... ..+
T Consensus 206 y~~l~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~--------------l~~~~~~~~~~~-~~~ 269 (395)
T PRK08175 206 YADIVYD-GWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPE--------------LVSALARIKSYH-DYG 269 (395)
T ss_pred hHhhccC-CCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHH--------------HHHHHHHHHhhc-ccC
Confidence 7532211 100011 11 22356799999874443 399988773 444433221100 112
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.+.+...++..+++.. +. .+++++++.+...+++.+.|++.
T Consensus 270 ~~~~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~L~~~ 310 (395)
T PRK08175 270 TFTPLQVAAIAALEGD-QQ-CVRDIAEQYKRRRDVLVKGLHEA 310 (395)
T ss_pred CCcHHHHHHHHHHhCc-HH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 2223333333444321 11 34556666667777788877765
No 234
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.64 E-value=3.5e-15 Score=125.41 Aligned_cols=233 Identities=19% Similarity=0.192 Sum_probs=165.6
Q ss_pred ccccCCCCCCCCccC-CCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCC
Q 022463 8 MTNKYSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGG 86 (297)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~ 86 (297)
..+.|+.|..+.++. +.+.....+| .++|++.+-+. +++..++..+|..++.+++.|.|.|+..++.|.|
T Consensus 93 aleeyGaGlssvrfIcGtq~iHk~LE----~kiAqfh~rED-----~ilypscfdANag~feail~pedAvfSDeLNhAS 163 (417)
T KOG1359|consen 93 ALEEYGAGLSSVRFICGTQDIHKLLE----SKIAQFHGRED-----TILYPSCFDANAGAFEAILTPEDAVFSDELNHAS 163 (417)
T ss_pred HHHHhCCCccceeEEecchHHHHHHH----HHHHHHhCCCc-----eEEeccccccchHHHHHhcChhhhhhccccccch
Confidence 446788888877766 4556777888 99999988765 4888899999998999999999999999998888
Q ss_pred cccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-c-CCCCCCcccHHHHHHHHHhcC
Q 022463 87 HLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA-G-ASAYARLYDYERIRKVCNKQK 161 (297)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~-~-~~~~G~~~~~~~i~~la~~~g 161 (297)
... |++++. ....+|+-+++..+.+ .+-++|+- + .|.-|...|+++|..++++||
T Consensus 164 IId--------GirLck------------ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYg 223 (417)
T KOG1359|consen 164 IID--------GIRLCK------------RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYG 223 (417)
T ss_pred hhh--------hhHHHh------------hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHhcC
Confidence 865 333331 2234566666655542 24556666 3 666799999999999999999
Q ss_pred CEEEEehhhhcccccccCC-----CCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccC
Q 022463 162 AIMLADMAHISGLVAAGVI-----PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP 236 (297)
Q Consensus 162 ~~livD~a~~~g~~~~~~~-----~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (297)
.++++|++|+.|+....-. ..--..+|++..+..|.++|..||+..+.++ +.+.+.+...|
T Consensus 224 aLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~--------------li~llrqr~Rp 289 (417)
T KOG1359|consen 224 ALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKP--------------LISLLRQRSRP 289 (417)
T ss_pred cEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChh--------------HHHHHHhcCCc
Confidence 9999999999888654211 0001268999999999999999999999884 45555554445
Q ss_pred CCCC-CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 237 GLQG-GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 237 ~~~~-t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
...+ +.+...+.....+++.+... .....+.+...++|++......+
T Consensus 290 ylFSnslppavV~~a~ka~dllm~s---~~~i~~~~a~~qrfr~~me~aGf 337 (417)
T KOG1359|consen 290 YLFSNSLPPAVVGMAAKAYDLLMVS---SKEIQSRQANTQRFREFMEAAGF 337 (417)
T ss_pred eeecCCCChhhhhhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhcCc
Confidence 4422 22323333344566666533 55666777888888876554443
No 235
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.63 E-value=3.3e-14 Score=132.96 Aligned_cols=178 Identities=12% Similarity=0.094 Sum_probs=118.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC----CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g----~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
.|++..+..++++.+.+++.+.++ ++++ +|++|+|++ ++..++.++++|||.|+++.+.|+.+.....
T Consensus 81 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~----~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~--- 153 (468)
T PLN02450 81 LFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN----KLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLK--- 153 (468)
T ss_pred cCCCCCChHHHHHHHHHHHHHhhCCCCCcChH----HeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHh---
Confidence 355566777899777788877655 4565 499999994 6666778889999999999876655532111
Q ss_pred ccccceeeeeeEeeecccC-CCCCcCCHHHHHHHhhh-----cCCcEEEE-cCCC-CCCcccHH---HHHHHHHhcCCEE
Q 022463 96 TKKISAVSIFFETMPYRLN-ESTGYIDYDQLEKSATL-----FRPKLIVA-GASA-YARLYDYE---RIRKVCNKQKAIM 164 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~~~-~~~~~~d~~~l~~~l~~-----~~~~~v~~-~~~~-~G~~~~~~---~i~~la~~~g~~l 164 (297)
...|..+ ++++.+ .+++.+|++.+++.+.+ .++++|++ +++| +|.+.+.+ +|.++|++|++++
T Consensus 154 ----~~~g~~~--v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~i 227 (468)
T PLN02450 154 ----WRTGVEI--VPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHL 227 (468)
T ss_pred ----hcCCcEE--EEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEE
Confidence 0123333 444443 24567889999998864 26888888 7888 89887654 6778888999999
Q ss_pred EEehhhhcccccc-cCCC-CCC-----------CCccEEEecCCccC--CCCCceEEEEecC
Q 022463 165 LADMAHISGLVAA-GVIP-SPF-----------EYADVVTTTTHKSL--RGPRGAMIFFRKG 211 (297)
Q Consensus 165 ivD~a~~~g~~~~-~~~~-~~~-----------~~~D~~~~s~~K~l--~gp~gG~i~~~~~ 211 (297)
|+|++++.-.... .... .+. ..-=+++.|++|.+ .|-+-|+++..++
T Consensus 228 I~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~ 289 (468)
T PLN02450 228 ISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDE 289 (468)
T ss_pred EEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCH
Confidence 9999975321111 0000 000 01125688999976 4455599998763
No 236
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.63 E-value=9.4e-15 Score=132.38 Aligned_cols=236 Identities=15% Similarity=0.140 Sum_probs=142.5
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChHHHHH-HHHHh-cCCCCeEEEecCCCCCcccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSPSNFQ-VYTAL-LKPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~~~~~-~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
...|+......++++.+.+++.+..+ .+++ ..+++++|+..++. ++..+ .++||.|+++.+.|+......
T Consensus 37 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~---~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~--- 110 (363)
T PF00155_consen 37 FLGYPPPQGYPELREAIADFLGRRYGVPVDPE---ANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAA--- 110 (363)
T ss_dssp CTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGG---EGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHH---
T ss_pred cccCCCchhhHHHHHHHHHHhhhccCcccccc---eEEEEecccccchhhhhhcccccccccceecCCccccccccc---
Confidence 44566667788888444444432222 4444 14999999964443 45555 679999999997666654332
Q ss_pred cccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc-----CCcEEEE-cCCC-CCCcccHHHHHHH---HHhcCCEE
Q 022463 95 DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVA-GASA-YARLYDYERIRKV---CNKQKAIM 164 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~-~~~~-~G~~~~~~~i~~l---a~~~g~~l 164 (297)
+..|..+..+++... .++.+|++++++.+++. +++++++ +++| +|...+.+++.++ |++||+++
T Consensus 111 -----~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~i 184 (363)
T PF00155_consen 111 -----RLLGAEVIPVPLDSE-NDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIII 184 (363)
T ss_dssp -----HHTTSEEEEEEEEET-TTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEE
T ss_pred -----cccCceeeecccccc-ccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccce
Confidence 233433444443333 56889999999999863 3567777 6777 8988777655555 99999999
Q ss_pred EEehhhhccccccc-CC--CCCCC-Cc-cEEEecCCccCCCCCc---eEEEEecCchhhccCCccchhhHHHHhhhcccC
Q 022463 165 LADMAHISGLVAAG-VI--PSPFE-YA-DVVTTTTHKSLRGPRG---AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP 236 (297)
Q Consensus 165 ivD~a~~~g~~~~~-~~--~~~~~-~~-D~~~~s~~K~l~gp~g---G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (297)
|+|+++........ .. ...+. +. .+++.|++|.+ |..| |++++++ ++.+.+.....+
T Consensus 185 i~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i~~~~--------------~~~~~l~~~~~~ 249 (363)
T PF00155_consen 185 IVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYIVAPP--------------ELIERLRRFQRS 249 (363)
T ss_dssp EEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEEEEEH--------------HHHHHHHHHHHH
T ss_pred eeeeceeccccCCCccCcccccccccccceeeeeccccc-cccccccccccchh--------------hhhhhhhhcccc
Confidence 99999876554421 00 00001 23 37889999987 4344 9999977 344444433222
Q ss_pred CCCCCCchHHHHHHHHHHHHHhh-hcChhhHHHHhhhhHHHHHhhccCC
Q 022463 237 GLQGGPHNHTITGLAVALKQVCT-LITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 237 ~~~~t~~~~~~~al~~al~~~~~-~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
... +.....++...+..-.. ..-++++.++.+...+++.+.|++.
T Consensus 250 ~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 295 (363)
T PF00155_consen 250 GLS---SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI 295 (363)
T ss_dssp TTS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccc---cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh
Confidence 211 33333333333333321 0134667777777788888887665
No 237
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.63 E-value=4.8e-15 Score=134.03 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=135.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCC-CeEEEecCCCCCccccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKI 99 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~ 99 (297)
|+... ..+++ +.+++++|+++++ |++++|++ +...++.+++++| |+|+++.+.|.... ..+
T Consensus 57 Yp~~~-~~~Lr----~aia~~~~~~~~~----I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~--------~~~ 119 (354)
T PRK04635 57 YPECQ-PPELI----NAYSAYAGVAPEQ----ILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA--------ISA 119 (354)
T ss_pred CCCCC-HHHHH----HHHHHHhCcCHHH----EEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH--------HHH
Confidence 44332 46666 8888899998875 99999995 6655778888998 89999875444321 122
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc-CCEEEEehhhhccccc
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVA 176 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~-g~~livD~a~~~g~~~ 176 (297)
+..|.++..+ +.+ .++.+|++.++. + + ++++|++ +++| +|.+.|.+++.++++.. ++++|+|+++.--...
T Consensus 120 ~~~g~~v~~v--~~~-~~~~~~~~~l~~-~-~-~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~ 193 (354)
T PRK04635 120 ETFNVGVKAL--PLT-ADYQLPLDYIEQ-L-D-GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPE 193 (354)
T ss_pred HHcCCEEEEE--ecC-CCCCCCHHHHHh-c-c-CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccC
Confidence 3334334444 454 357789988873 4 4 8999999 7888 89999999999999864 7999999997532111
Q ss_pred ccCCCCCCCC-ccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHH
Q 022463 177 AGVIPSPFEY-ADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVA 253 (297)
Q Consensus 177 ~~~~~~~~~~-~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a 253 (297)
.......... -=+++.|++|+++ |.+-|+++.++ ++.+.+.....+ .+.+.+.. .++
T Consensus 194 ~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~--------------~~~~~l~~~~~~---~~~~~~~~---~~a 253 (354)
T PRK04635 194 YSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANE--------------ELIEILMRVIAP---YPVPLPVS---EIA 253 (354)
T ss_pred cchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCH--------------HHHHHHHhhcCC---CCCCHHHH---HHH
Confidence 0000000000 1156789999873 22239999877 344444432211 12222222 234
Q ss_pred HHHHhhhcChhhHH---HHhhhhHHHHHhhccCCCC
Q 022463 254 LKQVCTLITFSHIH---VFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 254 l~~~~~~~g~~~~~---~~~~~l~~~l~~~l~~~~~ 286 (297)
+..+.+. +.+.+. ++.+...+++.+.|++++.
T Consensus 254 ~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 288 (354)
T PRK04635 254 TQALSEA-GLARMKFQVLDLNAQGARLQAALSMYGG 288 (354)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444443 444443 3344556778888887764
No 238
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.63 E-value=1.7e-14 Score=129.20 Aligned_cols=211 Identities=14% Similarity=0.074 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
.+++ ++++++++.++++ +++++|++..+.++..++.+| .|+++..+|..+.... ...|.++
T Consensus 50 ~~lr----~~la~~~~~~~~~----i~~t~G~~~~i~~~~~~l~~g-~vl~~~p~y~~~~~~~--------~~~g~~~-- 110 (330)
T TIGR01140 50 DELR----AAAAAYYGLPAAS----VLPVNGAQEAIYLLPRLLAPG-RVLVLAPTYSEYARAW--------RAAGHEV-- 110 (330)
T ss_pred HHHH----HHHHHHhCCChhh----EEECCCHHHHHHHHHHHhCCC-eEEEeCCCcHHHHHHH--------HHcCCEE--
Confidence 6666 8888899987654 999999964333445557788 5888776655543322 1223223
Q ss_pred eecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhcccccccCCCC-
Q 022463 109 MPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS- 182 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~- 182 (297)
++++ |++.+++.+. +++++++ +++| +|.+.+ +++|.++|+++|+++|+|+++........+...
T Consensus 111 ~~~~--------d~~~l~~~~~--~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~ 180 (330)
T TIGR01140 111 VELP--------DLDRLPAALE--ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQA 180 (330)
T ss_pred EEeC--------CHHHHHhhcc--cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHh
Confidence 3222 7889998884 5777777 7888 898888 556778889999999999997533211111100
Q ss_pred CCCCccEEEecCCccCCCCCc--eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhh
Q 022463 183 PFEYADVVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 260 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~ 260 (297)
.....++++.|++|+++.|.- |+++.++ ++.+.+...... .+.+.+. ..++.+.+.+.
T Consensus 181 ~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~--------------~~~~~l~~~~~~---~~~s~~~---q~~~~~~l~~~ 240 (330)
T TIGR01140 181 ARFPGLVVLRSLTKFFGLAGLRLGFVVAHP--------------ALLARLREALGP---WTVNGPA---RAAGRAALADT 240 (330)
T ss_pred ccCCCEEEEEecchhhcCchhhhhheeCCH--------------HHHHHHHhcCCC---CCchHHH---HHHHHHHHhch
Confidence 001346889999998753322 9999877 344444433211 1223333 33344444444
Q ss_pred cChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 261 ITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 261 ~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
.-.++++++.+.+.+++.+.|++.+.++
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 268 (330)
T TIGR01140 241 AWQAATRARLAAERARLAALLARLGGLE 268 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 1236778888899999999998887543
No 239
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.62 E-value=5.6e-15 Score=133.43 Aligned_cols=214 Identities=13% Similarity=0.085 Sum_probs=133.1
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCC-CeEEEecCCCCCcccccccccccccceeeeeeEeeec
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 111 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 111 (297)
..++++++++|+++++ |++++|++ +...++.+++++| |.|+++..+|.... ..++..|..+..+
T Consensus 61 ~l~~~~a~~~g~~~~~----I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~--------~~~~~~G~~~~~v-- 126 (351)
T PRK01688 61 AVIENYAAYAGVKPEQ----VLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS--------VSAETIGVEIRTV-- 126 (351)
T ss_pred HHHHHHHHHhCCCHHH----EEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH--------HHHHHcCCEEEEe--
Confidence 3448899999999875 99999995 6555778888887 89999875544331 1233444444444
Q ss_pred ccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc--CCEEEEehhhhcccccccCCCCCC-C-
Q 022463 112 RLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPF-E- 185 (297)
Q Consensus 112 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~--g~~livD~a~~~g~~~~~~~~~~~-~- 185 (297)
+.+ +++.+|++++++.+ + ++++|++ +++| +|...+.+++.++++.. ++++|+|+++.-- .+.. ...++ .
T Consensus 127 ~~~-~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f-~~~~-s~~~~~~~ 201 (351)
T PRK01688 127 PTL-DNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEF-CPQA-SLAGWLAE 201 (351)
T ss_pred ecC-CCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhc-CCCC-ChHHHHhh
Confidence 455 45789999999987 4 7999988 7888 89999888777776532 6889999996421 1110 00000 0
Q ss_pred Cc-cEEEecCCccCCCCCc---eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhh-
Q 022463 186 YA-DVVTTTTHKSLRGPRG---AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL- 260 (297)
Q Consensus 186 ~~-D~~~~s~~K~l~gp~g---G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~- 260 (297)
.. =+++.|++|++ |..| |+++.++ +..+.+.....+. +.+.+...+ |...+.+.
T Consensus 202 ~~n~iv~rSfSK~~-glaGlRiGy~i~~~--------------~~i~~l~~~~~~~---~v~~~~~~~---a~~~L~~~~ 260 (351)
T PRK01688 202 YPHLVILRTLSKAF-ALAGLRCGFTLANE--------------EVINLLLKVIAPY---PLSTPVADI---AAQALSPQG 260 (351)
T ss_pred CCCEEEEecchHhh-cCHHHHHhHHhCCH--------------HHHHHHHhccCCC---CCCHHHHHH---HHHHHhcch
Confidence 11 26778999976 4344 9999877 3444444432222 223232222 33333322
Q ss_pred -cChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 261 -ITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 261 -~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
.-+++..+..++..+++.+.|++++.+
T Consensus 261 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 288 (351)
T PRK01688 261 IAAMRERVAEINANRQWLIAALKEIPCV 288 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 023334444555667888888877654
No 240
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.62 E-value=2.7e-14 Score=126.09 Aligned_cols=226 Identities=16% Similarity=0.167 Sum_probs=150.7
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChH---HHHHHHHHhc-CC----CCeEEEecCCCCCcccccccccccccceeeee
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSP---SNFQVYTALL-KP----HDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~---~~~~~~~~~~-~~----gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
..+++|+++.|.|. +.+++++|++ +-+.+++++- .. .+++|+|+..|+.+.. . +.+.|
T Consensus 113 ~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA--S------Aam~G-- 178 (496)
T COG1003 113 ELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA--S------AAMAG-- 178 (496)
T ss_pred HHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh--h------HhhcC--
Confidence 33499999999987 5689999995 3334677662 23 4689999999999843 2 33455
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCC-CcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYA-RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 183 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G-~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~ 183 (297)
+.+|.++++ +++.+|+++|++++.+ ++.++++ +++..| ...++.+|+++.|++|..|..|+|...+.+.. ..|
T Consensus 179 ~~VV~V~~~-~~G~VDlddLk~k~~~-~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~---~rP 253 (496)
T COG1003 179 FKVVVVKCD-ENGNVDLDDLRAKAED-NLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGL---ARP 253 (496)
T ss_pred ceEEEEecC-CCCCccHHHHHHHhcc-ceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhcc---ccc
Confidence 445666787 7899999999999997 9999999 465578 66789999999999999999999976555443 122
Q ss_pred CC-CccEEEecCCccCCCCCc------eEEEEecCchhhccCCccchh-hHHH-Hhhhccc--CCC----CCCCchHHHH
Q 022463 184 FE-YADVVTTTTHKSLRGPRG------AMIFFRKGVKEINKQGKEVFY-DYEE-KINQAVF--PGL----QGGPHNHTIT 248 (297)
Q Consensus 184 ~~-~~D~~~~s~~K~l~gp~g------G~i~~~~~~~~~~~~g~~~~~-~~~~-~~~~~~~--~~~----~~t~~~~~~~ 248 (297)
.+ |+|++-+..||+|+.|.| |-|.++..+. ...+++... ...+ .+..... .+. .|+ ...+.
T Consensus 254 Gd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~--pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs--~~il~ 329 (496)
T COG1003 254 GDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLA--PFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGS--ASILP 329 (496)
T ss_pred cccccceEEeecccccccCCCCCCCCCCceehHhhcc--ccCCCCcccCCCccccccCCCCccceeeccccCc--chHHH
Confidence 22 899999999999988776 2355554321 111110000 0000 0000000 000 222 22233
Q ss_pred HHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 249 GLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 249 al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
-.++-+..+... |+.+.-+...-.++|+..+|+.
T Consensus 330 ~a~~YI~~mG~~-GL~~ase~AvLNANYia~rL~~ 363 (496)
T COG1003 330 IAWAYIRMMGAD-GLKQASEVAVLNANYIARRLKG 363 (496)
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHhhh
Confidence 334445555555 8888888888899999999985
No 241
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.62 E-value=2.3e-14 Score=130.31 Aligned_cols=215 Identities=13% Similarity=0.042 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..+++ +.+++++++++++ |++++|++ +...++.++++|||.|+++...|+..... +...|..+
T Consensus 69 ~~~Lr----~~ia~~~~~~~~~----I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~--------~~~~g~~~ 132 (369)
T PRK08153 69 NHDLR----HALAAHHGVAPEN----IMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYH--------VAGFGGRL 132 (369)
T ss_pred cHHHH----HHHHHHhCCCHHH----EEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHH--------HHHcCCeE
Confidence 45666 8888888988764 99999996 44446677789999999988666655322 22233334
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc--CCEEEEehhhhcccccccCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~--g~~livD~a~~~g~~~~~~~~~ 182 (297)
..+ +.++ ..+|++++.+.+.+.+++++++ +++| +|.+.+.+++.++++.. ++++|+|+++..- ...+ ...
T Consensus 133 ~~v--p~~~--~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~-~~~~-~~~ 206 (369)
T PRK08153 133 VTV--PYRD--DREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCET-APAG-AAP 206 (369)
T ss_pred EEe--eCCC--CCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhh-cCcc-cch
Confidence 334 4442 2579999988776548899988 7888 89999998888877654 8999999997521 1111 011
Q ss_pred CCC---CccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 183 PFE---YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 183 ~~~---~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
++. .--+++.|++|.++ |-+-|+++.+++ +.+.+.....+ .+.+.+...++.++|+
T Consensus 207 ~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~--------------~~~~l~~~~~~---~~~s~~~q~~~~~~l~-- 267 (369)
T PRK08153 207 PIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPG--------------TIKAFDKVRNH---FGMNRIAQAAALAALK-- 267 (369)
T ss_pred hhhhcCCCEEEEecchHhccCcchheeeeecCHH--------------HHHHHHHhhcC---CCCCHHHHHHHHHHhc--
Confidence 111 12367889999874 333499998763 34444332211 2345555555555553
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+..-+++.++..+...+++.+.|++.
T Consensus 268 -~~~~~~~~~~~~~~~r~~~~~~L~~~ 293 (369)
T PRK08153 268 -DQAYLAEVVGKIAAARDRIAAIARAN 293 (369)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 22135566777777777777777654
No 242
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.62 E-value=3.9e-14 Score=128.54 Aligned_cols=222 Identities=12% Similarity=-0.020 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCC-CeEEEecCCCCCcccccccccccccceeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
..+++ +.+++++++++++ |++++|++ +...++.+++.+| |.|+++...+.... ......|..
T Consensus 61 ~~~lr----~~ia~~~~~~~~~----I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~--------~~~~~~g~~ 124 (364)
T PRK04781 61 PPGLR----SALAALYGCAPEQ----LLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA--------VCARLQNAP 124 (364)
T ss_pred HHHHH----HHHHHHhCcChHH----EEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH--------HHHHHcCCE
Confidence 35565 8888899998764 99999984 5555778888898 78888764332221 112233444
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHh--cCCEEEEehhhhcccccccCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~--~g~~livD~a~~~g~~~~~~~~ 181 (297)
+..+++.-+.+...+|++++.+.+...++++|++ +++| +|.+.+.+++.++++. +++++|+|+++.-- .. ....
T Consensus 125 ~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f-~~-~~~~ 202 (364)
T PRK04781 125 LVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEF-SD-VPSA 202 (364)
T ss_pred EEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhh-cC-Ccch
Confidence 4444432121235678998876654348999999 7888 8999999988888775 47899999996521 11 0000
Q ss_pred CCC-CCc--cEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 022463 182 SPF-EYA--DVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 256 (297)
Q Consensus 182 ~~~-~~~--D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~ 256 (297)
.++ ... =+++.|++|.++ |-+-|+++.++ ++.+.+.....+. +.+.+...++..+|
T Consensus 203 ~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~--------------~l~~~l~~~~~~~---~~~~~~~~~a~~~l-- 263 (364)
T PRK04781 203 VGLLARYDNLAVLRTLSKAHALAAARIGSLIANA--------------ELIAVLRRCQAPY---PVPTPCAALAEQAL-- 263 (364)
T ss_pred HHHHhhCCCEEEEecChhhcccccceeeeeeCCH--------------HHHHHHHhccCCC---CCCHHHHHHHHHHH--
Confidence 000 111 267789999764 44559999887 4455555443222 22223332222333
Q ss_pred Hhhh--cChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 257 VCTL--ITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 257 ~~~~--~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
.+. .-..+..++.++..+++.+.|++++.+
T Consensus 264 -~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 295 (364)
T PRK04781 264 -SAPALAVTARRVAEVRAERERLHAALAQLPGV 295 (364)
T ss_pred -hcccHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 221 012233334556667788888777544
No 243
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.61 E-value=4.3e-14 Score=127.90 Aligned_cols=218 Identities=11% Similarity=0.050 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..+++ +.+++++++++++ |++++|++ +...++.++ .+|+ +++....+.... ..++..|..+
T Consensus 57 ~~~lr----~~ia~~~~~~~~~----i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~--------~~~~~~g~~~ 118 (356)
T PRK08056 57 YRHLH----QALARHHQVPASW----ILAGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYR--------RALQQVGCEI 118 (356)
T ss_pred HHHHH----HHHHHHhCcChhh----EEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHH--------HHHHHcCCeE
Confidence 45555 8888889998865 99999995 554455554 7787 455443222211 1233334434
Q ss_pred EeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 107 ETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 107 ~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
..+ +.+++ +..+| +++.+.+.+ ++++|++ +++| +|...+ +++|.++|+++++++|+|+++.- ....+..
T Consensus 119 ~~v--~~~~~~~~~~~-~~~~~~~~~-~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~ 193 (356)
T PRK08056 119 RRY--SLREADGWQLT-DAILEALTP-DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFID-FIPDETG 193 (356)
T ss_pred EEE--ecccccCCCcc-HHHHHhccC-CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhc-cCCcchH
Confidence 444 44422 34555 355566665 8999998 7888 898888 77889999999999999998532 1110000
Q ss_pred C-CCC--CCccEEEecCCccCCCCCc--eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHH
Q 022463 181 P-SPF--EYADVVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 255 (297)
Q Consensus 181 ~-~~~--~~~D~~~~s~~K~l~gp~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~ 255 (297)
. ..+ ....+++.|++|+++-|.- |+++..++ ...+.+.....+ .+.+.+...+ +..
T Consensus 194 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~-------------~~~~~l~~~~~~---~~~~~~~~~~---a~~ 254 (356)
T PRK08056 194 FIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD-------------AAVARMRRQQMP---WSINAFAALA---GEV 254 (356)
T ss_pred HHHHhccCCCEEEEEechhhccCcchhheeeecCCH-------------HHHHHHHHhCCC---CchhHHHHHH---HHH
Confidence 0 000 1346888999998743333 99987542 233333322111 1222232222 232
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
.+....-..+.+++.++..+++.+.|++++.+
T Consensus 255 ~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 286 (356)
T PRK08056 255 ILQDRAYQQATWQWLAEEGARFYQALCALPLL 286 (356)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33222123445666677778888888776554
No 244
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=99.61 E-value=1.6e-15 Score=133.10 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCC---CCcccccccccccccceeeeeeEeeeccc
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH---GGHLSHGYQTDTKKISAVSIFFETMPYRL 113 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 113 (297)
+.+++++|++.. +++++++++.+.++.++ .+|.+|+++..+- ++.+..-..+.. .|.. .+.+..
T Consensus 54 ~ll~~ltgAeaA-----~VvNnnaAAv~L~l~~l-a~~~EvIvsRGelVeiGgsFRip~vm~~-----sGa~--lvEVGt 120 (367)
T PF03841_consen 54 ELLCELTGAEAA-----LVVNNNAAAVLLALNTL-AKGKEVIVSRGELVEIGGSFRIPDVMRQ-----SGAR--LVEVGT 120 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-----ccccccccccccccccc-cccccccccccccccccccccccccccc-----cccc--cccccc
Confidence 788999999863 77778887776455555 4677788775432 222222222222 3322 233332
Q ss_pred CCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCC---C--CcccHHHHHHHHHhcCCEEEEehhhhc--cccccc------C
Q 022463 114 NESTGYIDYDQLEKSATLFRPKLIVA-GASAY---A--RLYDYERIRKVCNKQKAIMLADMAHIS--GLVAAG------V 179 (297)
Q Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~---G--~~~~~~~i~~la~~~g~~livD~a~~~--g~~~~~------~ 179 (297)
+..-.+++.+++|++ +|.+++- |.||| | ...+++++.+++++|++++++|.+... ...+.+ +
T Consensus 121 ---tN~t~~~Dye~AI~e-~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v 196 (367)
T PF03841_consen 121 ---TNRTHLSDYEKAITE-NTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTV 196 (367)
T ss_dssp --------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT--------
T ss_pred ---ccccccccccccccc-cccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHH
Confidence 345567788899998 8887766 88886 4 457899999999999999999987421 101111 1
Q ss_pred CCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 180 IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 180 ~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
...--.|+|+++||+.|.|+||+.|+|+.++ ++.++++.... .+.--..-..++++.++|+.+.+
T Consensus 197 ~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk--------------~lI~~lk~~pl-~RalrvdK~tla~L~atL~~Y~~ 261 (367)
T PF03841_consen 197 QEYLAAGADLVTFSGDKLLGGPQAGIIVGKK--------------ELIEKLKKHPL-GRALRVDKLTLAALEATLRLYLD 261 (367)
T ss_dssp --CCCCT-SEEEEETTSSSSS-S-EEEEEEH--------------HHHHHHHHHHH-TTT-B--HHHHHHHHHHHHH---
T ss_pred HHHhhcCCCEEEEECCCcCCCCCeEEEEeCH--------------HHHHHHhhCCC-cceEeeCHHHHHHHHHHHHHHHH
Confidence 1111238999999999999999999999999 45555543321 11223355888899999998875
No 245
>PRK06855 aminotransferase; Validated
Probab=99.60 E-value=6.9e-14 Score=129.73 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=115.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+......++++.+.+++.+..|. +++ +|++|+|++ +...++ .++.|||.|+++.+.|+..... .
T Consensus 67 ~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~----~I~it~G~~~al~~~~-~l~~~Gd~Vlv~~P~Y~~~~~~-~---- 136 (433)
T PRK06855 67 YGYCPTKGVLETREFLAELNNKRGGAQITPD----DIIFFNGLGDAIAKIY-GLLRREARVIGPSPAYSTHSSA-E---- 136 (433)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCHh----HEEEcCcHHHHHHHHH-HhcCCCCeEEEeCCCCchHHHH-H----
Confidence 34566677788998777888776564 555 499999995 554344 4789999999998776653211 0
Q ss_pred cccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhh-cCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEehh
Q 022463 97 KKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL-FRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~-~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~a 169 (297)
....| .+.++++.++ +++.+|++++++.++. .+++++++ +++| +|.+.+. ++|.++|++||+++|+|++
T Consensus 137 --~~~~g--~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~ 212 (433)
T PRK06855 137 --AAHAG--YPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEI 212 (433)
T ss_pred --HHhcC--CeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 00112 3334445553 3467899999999974 25677777 7888 8988775 4777889999999999999
Q ss_pred hhcccccccCCCCCC-----CCccEEEecCCccCC--CCCceEEEEe
Q 022463 170 HISGLVAAGVIPSPF-----EYADVVTTTTHKSLR--GPRGAMIFFR 209 (297)
Q Consensus 170 ~~~g~~~~~~~~~~~-----~~~D~~~~s~~K~l~--gp~gG~i~~~ 209 (297)
+.--..... ...++ +..-+++.|++|.++ |-+-|+++..
T Consensus 213 Y~~l~~~~~-~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p 258 (433)
T PRK06855 213 YNNIVYNGK-KTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVY 258 (433)
T ss_pred ccccccCCC-CCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEe
Confidence 653221111 01111 012377899999874 4445999974
No 246
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.60 E-value=2.5e-14 Score=130.13 Aligned_cols=212 Identities=14% Similarity=0.118 Sum_probs=131.5
Q ss_pred HHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCC
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE 115 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 115 (297)
+.+++++++++++ |++++|++ +...++.+++++||.|+++..+|+.... .++..|..+..+ +.+
T Consensus 78 ~~ia~~~~~~~~~----i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~--------~~~~~g~~~~~v--~~~- 142 (371)
T PRK05166 78 EAIAARTGVPADR----IILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHED--------YPTMMGARVERV--TVT- 142 (371)
T ss_pred HHHHHHhCcCHHH----EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCeEEEe--ecC-
Confidence 7888899998764 99999995 5444677788999999998755543321 122334334344 454
Q ss_pred CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHh--cCCEEEEehhhhcccccccCCCCCC---C--C
Q 022463 116 STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPF---E--Y 186 (297)
Q Consensus 116 ~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~--~g~~livD~a~~~g~~~~~~~~~~~---~--~ 186 (297)
.++.+|++++++.+++ +++++++ +++| +|.+.|.+++.++++. .++++|+|+++.--. ..+..+..+ . +
T Consensus 143 ~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~ 220 (371)
T PRK05166 143 PDLGFDLDALCAAVAR-APRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYA-AGDDYPSALTLLKARG 220 (371)
T ss_pred CCCCCCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhc-CCcCcccHHHHHhhcC
Confidence 4578999999999987 8999988 7888 8999998877777664 478999999965322 111111100 0 1
Q ss_pred -ccEEEecCCccC--CCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcCh
Q 022463 187 -ADVVTTTTHKSL--RGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITF 263 (297)
Q Consensus 187 -~D~~~~s~~K~l--~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~ 263 (297)
--+++.|++|.+ .|.+-|+++..++ ++.+.+.....+ .+.+.+...++.+++ .....+
T Consensus 221 ~~vi~i~SfSK~~~l~GlRiG~~i~~~~-------------~l~~~~~~~~~~---~~~~~~~q~~~~~~l---~~~~~~ 281 (371)
T PRK05166 221 LPWIVLRTFSKAYGLAGLRVGYGLVSDP-------------ELVGLLDRVRTP---FNVNGAAQAAALAAL---DDEEHL 281 (371)
T ss_pred CCEEEEeechHhhhcchhheeeeecCCH-------------HHHHHHHHhccC---CCCCHHHHHHHHHHh---cCHHHH
Confidence 126788999976 3444499877542 333333332211 122333333333333 222135
Q ss_pred hhHHHHhhhhHHHHHhhccCC
Q 022463 264 SHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 264 ~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++..+..++..+++.+.|++.
T Consensus 282 ~~~~~~~~~~r~~l~~~L~~~ 302 (371)
T PRK05166 282 AKGVALALAERERLKKELAEM 302 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 555566666677777777765
No 247
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.60 E-value=2.5e-14 Score=129.84 Aligned_cols=215 Identities=15% Similarity=0.104 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
...+++ +.+++++++++++ |++++|++ +...++.+++++||.|+++.++|+.... .+...|..
T Consensus 65 g~~~Lr----~aia~~~~~~~~~----I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~ 128 (366)
T PRK01533 65 GATTLR----QTIANKLHVKMEQ----VLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRH--------HAIIEGCE 128 (366)
T ss_pred CHHHHH----HHHHHHhCCCcce----EEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHH--------HHHHcCCE
Confidence 345566 8888889998865 99999994 6656788889999999998855444322 23344544
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHH---hcCCEEEEehhhhcccccccCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCN---KQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~---~~g~~livD~a~~~g~~~~~~~ 180 (297)
+..+ +.+ ++.+|++.+++.+++ +++++++ +++| +|.+.+.+++.++++ +++ ++|+|+++. .....+..
T Consensus 129 v~~v--~~~--~~~~d~~~l~~~~~~-~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~-~~~~~~~~ 201 (366)
T PRK01533 129 VKEV--ALN--NGVYDLDEISSVVDN-DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYY-EYVTAKDF 201 (366)
T ss_pred EEEe--ecC--CCCcCHHHHHHHhCc-CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHH-HhhccccC
Confidence 5444 444 346999999999976 8999988 7888 899988877666655 444 678899875 22211100
Q ss_pred CCCC---C--CccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHH
Q 022463 181 PSPF---E--YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVA 253 (297)
Q Consensus 181 ~~~~---~--~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a 253 (297)
..+. . .--+++.|++|.++ |-+-|+++.++ ++.+.+.....+ .+.+.+...++.++
T Consensus 202 ~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~--------------~~~~~l~~~~~~---~~~~~~~q~aa~~~ 264 (366)
T PRK01533 202 PETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE--------------ELIEKLNVVRLP---FNVSSLAQKAATIA 264 (366)
T ss_pred cchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH--------------HHHHHHHHhcCC---CCcCHHHHHHHHHH
Confidence 0000 0 12377899999864 33339998876 445544443222 23455555555555
Q ss_pred HHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 254 LKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 254 l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
|+ +..-.+++++..++..+++.+.++..
T Consensus 265 l~---~~~~~~~~~~~~~~~r~~~~~~l~~~ 292 (366)
T PRK01533 265 FG---DDEFIEEIVRVNTEGLRQYESFCKEN 292 (366)
T ss_pred hC---CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 53 22123445555555666666655544
No 248
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.60 E-value=2.4e-14 Score=141.87 Aligned_cols=222 Identities=10% Similarity=0.022 Sum_probs=146.5
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh-cCCC--CeEEEecCCCCCcccccccc-cccccceeeeeeEe
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPH--DRIMALDLPHGGHLSHGYQT-DTKKISAVSIFFET 108 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~-~~~g--d~Vl~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~ 108 (297)
+.|..+++++|+++++ +.+..+++ +..+++.+. +++| |+|++++.+|+++...+... ...+++ ++.
T Consensus 152 ~~Qt~ia~LtG~~~an----aSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~Gie-----V~~ 222 (993)
T PLN02414 152 NYQTMITDLTGLPMSN----ASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLE-----VVV 222 (993)
T ss_pred HHHHHHHHHhCCChhh----EeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCE-----EEE
Confidence 4679999999999864 88887774 333455555 5544 78999999999988776432 122322 333
Q ss_pred eecccCCCCCcCCHHHHHHHhhhcCCcEEEEc-CCCCCCcccHHHHHHHHHhcCCEEEEehhhhccccccc-CCCCCCCC
Q 022463 109 MPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFEY 186 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~-~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~~~~~ 186 (297)
++ .+ . .| ...+ .+..++++ ++++|.+.|+++|.++||++|+++++ +++..+..++. ...+ |
T Consensus 223 v~--~~-~---~~------~~~~-~v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~---G 285 (993)
T PLN02414 223 AD--EK-D---FD------YSSG-DVCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEW---G 285 (993)
T ss_pred ec--ch-h---hc------cccC-ceEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhc---c
Confidence 32 22 1 11 1122 34455554 55689999999999999999999999 88888777764 3344 9
Q ss_pred ccEEEecCCccC-----CCCCceEEEEecCchhh---ccCCccchhh----HHH----HhhhcccCCCCCCCchHHHHHH
Q 022463 187 ADVVTTTTHKSL-----RGPRGAMIFFRKGVKEI---NKQGKEVFYD----YEE----KINQAVFPGLQGGPHNHTITGL 250 (297)
Q Consensus 187 ~D~~~~s~~K~l-----~gp~gG~i~~~~~~~~~---~~~g~~~~~~----~~~----~~~~~~~~~~~~t~~~~~~~al 250 (297)
+|++++++|||+ +||..|+++++++.... ...|++.... +.. +.++.++. .+|.|+....++
T Consensus 286 ADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrE--kaTsNict~qaL 363 (993)
T PLN02414 286 ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRD--KATSNICTAQAL 363 (993)
T ss_pred CcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhc--ccccchhHHHHH
Confidence 999999999997 66666999999976212 2334431100 000 01111111 456676555555
Q ss_pred HHHHH-----HHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 251 AVALK-----QVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 251 ~~al~-----~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.+++. ++... |++++.+++..++.++.++|++.
T Consensus 364 ~A~la~~y~~~~g~~-Gl~~Ia~ri~~la~~l~~~L~~~ 401 (993)
T PLN02414 364 LANMAAMYAVYHGPE-GLKTIAQRVHGLAGVFAAGLKKL 401 (993)
T ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhc
Confidence 54443 33445 99999999999999999999764
No 249
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.59 E-value=1.4e-14 Score=143.99 Aligned_cols=222 Identities=11% Similarity=0.017 Sum_probs=143.1
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh-cCCC--CeEEEecCCCCCcccccccccccccceeeeeeEee
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPH--DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 109 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~-~~~g--d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 109 (297)
+.|..+++++|++..+ +.+..+++ +..++++++ ++++ |+|++++.+|+++...+... +...|.+++.+
T Consensus 125 ~~Qt~la~LtG~~~an----aSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~----a~~~G~ev~~~ 196 (954)
T PRK05367 125 NFQTMVADLTGLEIAN----ASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTR----AEPLGIEVVVG 196 (954)
T ss_pred HHHHHHHHHHCCChhh----ccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHH----HHhCCCEEEEe
Confidence 4669999999999864 77776764 444455555 4554 89999999999987665432 11223223334
Q ss_pred ecccCCCCCcCCHHHHHHHhhhcCCcEEEEc-CCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCcc
Q 022463 110 PYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAD 188 (297)
Q Consensus 110 ~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~-~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D 188 (297)
+.+ . |++ .+ ++.+++++ ++++|.+.|+++|.++||++|+++++|+.+.+..+..+...+ |+|
T Consensus 197 --~~~-~----d~~------~~-~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~---GaD 259 (954)
T PRK05367 197 --DAA-K----ALD------HD-DVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEM---GAD 259 (954)
T ss_pred --cCc-c----CCC------cc-cEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhc---CCC
Confidence 333 1 111 22 45555554 555899999999999999999999999987555544444444 999
Q ss_pred EEEecCCcc-----CCCCCceEEEEecCch--hh-ccCCccchh----hHHHHh----hhcccCCCCCCCchHH---HHH
Q 022463 189 VVTTTTHKS-----LRGPRGAMIFFRKGVK--EI-NKQGKEVFY----DYEEKI----NQAVFPGLQGGPHNHT---ITG 249 (297)
Q Consensus 189 ~~~~s~~K~-----l~gp~gG~i~~~~~~~--~~-~~~g~~~~~----~~~~~~----~~~~~~~~~~t~~~~~---~~a 249 (297)
++++++||| ++||..|++++++++. +. ...|+.... .+...+ ++..+. .+|.|+.. +.+
T Consensus 260 i~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRre--kaTsNict~qaL~a 337 (954)
T PRK05367 260 IAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRRE--KATSNICTAQVLLA 337 (954)
T ss_pred EEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccccccc--ccccccchHHHHHH
Confidence 999999999 7778559999998753 22 223432110 011000 111111 33444332 222
Q ss_pred HHHH--HHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 250 LAVA--LKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 250 l~~a--l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
+.++ +.++... |++++.++...++.++.++|++
T Consensus 338 ~~a~~y~~~~g~~-Gl~~Ia~~~~~la~~l~~~L~~ 372 (954)
T PRK05367 338 VMASMYAVYHGPE-GLKAIARRVHRLAAILAAGLRA 372 (954)
T ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 3556767 9999999999999999999976
No 250
>PRK07505 hypothetical protein; Provisional
Probab=99.59 E-value=2.3e-13 Score=125.18 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=124.9
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc----CCCC-eEEEe-cCCCCCcccccccccccccceeeeeeE
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL----KPHD-RIMAL-DLPHGGHLSHGYQTDTKKISAVSIFFE 107 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~----~~gd-~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 107 (297)
+.+++++++++. . .++++||++++..++..+. .+|+ .|++. ...|++.... ...... +..+
T Consensus 95 ~l~~~la~~~~~-~-----~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~-~~~~~~-----~~~v- 161 (402)
T PRK07505 95 DLEEALSELFGA-S-----VLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNIL-KGICAD-----ETEV- 161 (402)
T ss_pred HHHHHHHHHhCC-C-----EEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhh-hhhhhc-----CCeE-
Confidence 334999999987 2 2888999988876654332 2233 24444 4556654211 111111 1112
Q ss_pred eeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccccc-ccC----C
Q 022463 108 TMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVA-AGV----I 180 (297)
Q Consensus 108 ~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~-~~~----~ 180 (297)
+.++. .|++++++++++ +++++++ +++| +|.+.|+++|.++|+++|+++|+|++|+.+... .+. .
T Consensus 162 -~~~~~------~d~~~l~~~~~~-~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~ 233 (402)
T PRK07505 162 -ETIDH------NDLDALEDICKT-NKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRS 233 (402)
T ss_pred -EEeCC------CCHHHHHHHHhc-CCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHH
Confidence 22232 388999999876 6777777 5666 789999999999999999999999998653221 110 0
Q ss_pred CCC--CCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCCCchHHHHHHHHHHHHH
Q 022463 181 PSP--FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 181 ~~~--~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~al~~al~~~ 257 (297)
... .....+++.|++|.++++ ||++++.++ +..+.+.....+.. .++++...++++.++++.+
T Consensus 234 ~~~~~~~d~~i~~~s~sK~~~~~-Gg~~~~~~~-------------~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~ 299 (402)
T PRK07505 234 ELDYRLNERTIIAASLGKAFGAS-GGVIMLGDA-------------EQIELILRYAGPLAFSQSLNVAALGAILASAEIH 299 (402)
T ss_pred HcCCCCCCCeEEEEechhhhhcc-CeEEEeCCH-------------HHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH
Confidence 000 012346777999988654 677765432 33444443323322 4456677888888888876
Q ss_pred hhhcChhhHHHHhhhhHHHH
Q 022463 258 CTLITFSHIHVFSLHVYPAF 277 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l 277 (297)
.+. .+.+..++.++..+.+
T Consensus 300 ~~~-~~~~~~~~l~~~~~~~ 318 (402)
T PRK07505 300 LSE-ELDQLQQKLQNNIALF 318 (402)
T ss_pred hcc-CcHHHHHHHHHHHHHH
Confidence 655 5555555544444443
No 251
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.59 E-value=1.3e-13 Score=128.13 Aligned_cols=178 Identities=13% Similarity=0.077 Sum_probs=120.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcC----CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g----~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
.+|.+..+...+++.+.+.+.+.++ ++++ +|++|+|++ ++..++.+++.|||.|+++.+.|+.+......
T Consensus 89 ~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~----~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~- 163 (447)
T PLN02607 89 ALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD----RIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW- 163 (447)
T ss_pred hccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH----HeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh-
Confidence 3455566778899888788887766 4565 499999985 66667777899999999998777666432210
Q ss_pred cccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhh-----cCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCE
Q 022463 95 DTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL-----FRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAI 163 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~-----~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~ 163 (297)
..| ++.++++.+. +++.+|++.+++++++ .++++|++ +|+| +|.+.+ +++|.++|++||+.
T Consensus 164 ------~~g--~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~ 235 (447)
T PLN02607 164 ------RTG--VKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIH 235 (447)
T ss_pred ------cCC--cEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCE
Confidence 112 2334445543 3457899999999874 36888888 7888 898877 56888889999999
Q ss_pred EEEehhhhcccccccCCCCC------CC--C-cc--EEEecCCccCCC--CCceEEEEec
Q 022463 164 MLADMAHISGLVAAGVIPSP------FE--Y-AD--VVTTTTHKSLRG--PRGAMIFFRK 210 (297)
Q Consensus 164 livD~a~~~g~~~~~~~~~~------~~--~-~D--~~~~s~~K~l~g--p~gG~i~~~~ 210 (297)
+|+|++++............ .. + .+ .++.|++|.++. -+-|+++..+
T Consensus 236 lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n 295 (447)
T PLN02607 236 LVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYN 295 (447)
T ss_pred EEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcC
Confidence 99999976432211000000 00 0 12 567899998743 3339998744
No 252
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.59 E-value=1e-13 Score=125.46 Aligned_cols=215 Identities=10% Similarity=-0.003 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
...++ +.+++.+++++++ |++|+|++ +...+++++++|||.|+++++.|..... .....|..+
T Consensus 67 ~~~lr----~~ia~~~~~~~~~----I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~--------~~~~~g~~~ 130 (357)
T PRK14809 67 HADLT----AALADRWDVSPEQ----VWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGM--------SARYHHGEV 130 (357)
T ss_pred HHHHH----HHHHHHhCCCcce----EEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHHcCCeE
Confidence 45566 7778888988865 99999994 5555778889999999999855432211 122334445
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc--CCEEEEehhhhcccccccCCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~--g~~livD~a~~~g~~~~~~~~~ 182 (297)
..++++.+ +++.+|.+++.+.. + ++++|++ +++| +|.+.+.+++.++++.. ++++|+|+++..-... . ...
T Consensus 131 ~~~~l~~~-~~~~~~~~~~~~~~-~-~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~-~-~~~ 205 (357)
T PRK14809 131 REYPVSKA-DDFEQTADTVLDAY-D-GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAER-P-SAV 205 (357)
T ss_pred EEEecccC-cCCCcCHHHHHHhh-c-CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCC-c-hhH
Confidence 55554332 34677888777765 2 6888888 7888 89999988888877654 7899999997532111 0 000
Q ss_pred C-CCCc--cEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 183 P-FEYA--DVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 183 ~-~~~~--D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
+ .... =+++.|++|.++ |-+-|+++.++ ++.+.+.....+ ...+.+...+...+|
T Consensus 206 ~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~a~~~l--- 265 (357)
T PRK14809 206 ALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE--------------EWADAYARVNTP---FAASELACRAGLAAL--- 265 (357)
T ss_pred HHHhhCCCEEEEecchhHhcCcchhheeeecCH--------------HHHHHHHHhCCC---CCCCHHHHHHHHHHh---
Confidence 0 0011 256789999874 33349999887 344444433211 122333333333333
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
.+..-+++.++..+...+++.+.|..
T Consensus 266 ~~~~~~~~~~~~~~~~r~~l~~~L~~ 291 (357)
T PRK14809 266 DDDEHVERTVETARWAREYIREELDA 291 (357)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33213455566666666777777754
No 253
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.58 E-value=8.5e-14 Score=125.06 Aligned_cols=221 Identities=15% Similarity=0.119 Sum_probs=152.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC-CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 98 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g-~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~ 98 (297)
.|++. ...+++ +.++++++ .+++ +|++++|+. +...++++++.+||.|+++..++..+ ...
T Consensus 53 rYPd~-~~~~l~----~a~a~~~~~~~~~----~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y--------~~~ 115 (356)
T COG0079 53 RYPDP-DYRELR----AALAEYYGVVDPE----NVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMY--------EIA 115 (356)
T ss_pred cCCCC-cHHHHH----HHHHHHhCCCCcc----eEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHH--------HHH
Confidence 34433 344555 88889999 6665 499999995 66668888999999999988444333 333
Q ss_pred cceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhc--CCEEEEehhhhccc
Q 022463 99 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGL 174 (297)
Q Consensus 99 ~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~--g~~livD~a~~~g~ 174 (297)
+...|.++..+ +.+ + +.+|++.+.+.+.+ ++++|++ +|+| +|...+.++|.+++... +.+|++|+|.. .+
T Consensus 116 a~~~g~~~~~v--~~~-~-~~~d~~~~~~~~~~-~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~-eF 189 (356)
T COG0079 116 AQLAGAEVVKV--PLK-E-FRLDLDAILAAIRD-KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYI-EF 189 (356)
T ss_pred HHhcCCeEEEe--ccc-c-cccCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchh-hc
Confidence 45555555444 455 3 88999999999998 9999999 7888 99999999888888764 78999999953 22
Q ss_pred ccccCCCCCCCCcc--EEEecCCccC--CCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHH
Q 022463 175 VAAGVIPSPFEYAD--VVTTTTHKSL--RGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGL 250 (297)
Q Consensus 175 ~~~~~~~~~~~~~D--~~~~s~~K~l--~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al 250 (297)
.+...... ....+ ++.-|++|.+ .|.+-|+.+.++ ++.+.++....|+. .+.+..++.
T Consensus 190 ~~~~~~~l-~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~--------------~~i~~l~~vr~p~~---v~~~a~~aa 251 (356)
T COG0079 190 SPESSLEL-LKYPPNLIVLRTFSKAFGLAGLRVGYAIANP--------------ELIAALNKVRPPFN---VSSPALAAA 251 (356)
T ss_pred CCchhhhh-ccCCCCEEEEEecHHhhhcchhceeeccCCH--------------HHHHHHHHhcCCCC---CCHHHHHHH
Confidence 22111100 00123 6677999954 444449988888 56777776665542 344555554
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
.++++.- +-+++..++....++++.+.|+...
T Consensus 252 ~aal~~~---~~~~~~~~~~~~~r~rl~~~l~~~~ 283 (356)
T COG0079 252 IAALRDA---DYLEESVERIREERERLYAALKALG 283 (356)
T ss_pred HHHcccH---HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4544333 2567788888889999999998876
No 254
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.58 E-value=2.6e-13 Score=124.78 Aligned_cols=221 Identities=13% Similarity=0.043 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcC---------CC-CeEEEecCCCCCccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK---------PH-DRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~---------~g-d~Vl~~~~~~~~~~~~~~~~~ 95 (297)
+...+++ ++++++++.+. .++++||++++..+++.+.. +| ++|++....+++.........
T Consensus 83 ~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~ 153 (401)
T PRK00854 83 DQLAPLY----EELAALTGSHK-----VLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFS 153 (401)
T ss_pred HHHHHHH----HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhcc
Confidence 3444555 78888888653 48888999988877776632 23 678877766544322111110
Q ss_pred ccccc---ee--eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc----HHHHHHHHHhcCCEE
Q 022463 96 TKKIS---AV--SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD----YERIRKVCNKQKAIM 164 (297)
Q Consensus 96 ~~~~~---~~--g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~----~~~i~~la~~~g~~l 164 (297)
..... +. ...+..+ + ..|++++++.+.+ ++++|++ ++.| +|.+.| +++|.++|++||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~--~------~~d~~~le~~i~~-~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~l 224 (401)
T PRK00854 154 TDPDARGGFGPFTPGFRVV--P------FGDAEALEAAITP-NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTL 224 (401)
T ss_pred CCccccccCCCCCCCeEEe--C------CCCHHHHHHHhCC-CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 00000 00 0001111 1 2478999999987 8999999 5555 687765 999999999999999
Q ss_pred EEehhhh-cccccccCC-CCCCCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCC
Q 022463 165 LADMAHI-SGLVAAGVI-PSPFEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240 (297)
Q Consensus 165 ivD~a~~-~g~~~~~~~-~~~~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (297)
|+|++|+ .|..+.... ....-.+|+++++ |+|.+.. .|+++++++ ..+.+....... ..
T Consensus 225 I~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~--------------~~~~l~~~~~~~-t~ 287 (401)
T PRK00854 225 ILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSE--------------VLGVLKPGQHGS-TF 287 (401)
T ss_pred EEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHH--------------HHhcccCCCCCC-CC
Confidence 9999997 333221110 0000146888875 9997643 477888774 333332211111 11
Q ss_pred CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 241 GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 241 t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
+.+....++..++|+.+.+. + +.++.+++.+++.+.|+++.
T Consensus 288 ~~~~~~~aa~~a~L~~l~~~-~---~~~~~~~~~~~l~~~L~~~~ 328 (401)
T PRK00854 288 GGNPLACAVARAALKVLTEE-G---MIENAAEMGAYFLEGLRSIR 328 (401)
T ss_pred CcCHHHHHHHHHHHHHHHHc-C---HHHHHHHHHHHHHHHHHhhc
Confidence 23556777778888877643 3 45667777788888777754
No 255
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.58 E-value=3.4e-14 Score=125.74 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=126.6
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCC--CCcccccccccccccceeeeeeEeeecc
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH--GGHLSHGYQTDTKKISAVSIFFETMPYR 112 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 112 (297)
+.+.++.+++++. ..++++++.+.+.++.++.+ +.+|++...+- ++.+.. ...+++.|.++ +.+.
T Consensus 73 ~~~~~~~~~~aea-----~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~~v-----~d~~~~aG~~l--~EvG 139 (395)
T COG1921 73 LAELLCGLTGAEA-----AAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAFRV-----PDIIRLAGAKL--VEVG 139 (395)
T ss_pred HHHHHhcccchhh-----eeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCCCh-----hHHHHHcCCEE--EEec
Confidence 3355666666654 36666666777656666655 55566553211 122111 12345555444 3323
Q ss_pred cCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCC--CcccHHHHHHHHHhcCCEEEEehhhhcccc-cccCCCCCCCCcc
Q 022463 113 LNESTGYIDYDQLEKSATLFRPKLIVA-GASAYA--RLYDYERIRKVCNKQKAIMLADMAHISGLV-AAGVIPSPFEYAD 188 (297)
Q Consensus 113 ~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G--~~~~~~~i~~la~~~g~~livD~a~~~g~~-~~~~~~~~~~~~D 188 (297)
.++.-++.+++.+|.+ ++++++- +.+|+| ...+.+++.++||++|+++++|.+...-.- -.++.+....|+|
T Consensus 140 ---~tn~t~~~d~~~AIne-~ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaD 215 (395)
T COG1921 140 ---TTNRTHLKDYELAINE-NTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGAD 215 (395)
T ss_pred ---ccCcCCHHHHHHHhcc-CCeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCC
Confidence 4556788999999998 8877766 777777 557888999999999999999988322111 1222332223899
Q ss_pred EEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhh
Q 022463 189 VVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 260 (297)
Q Consensus 189 ~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~ 260 (297)
++++|++|.|.||++|+|+.++ ++.++++.... .+.-...-..++++.+||+.+.+.
T Consensus 216 LV~~SgdKllgGPqaGii~GkK--------------elI~~lq~~~l-~Ralrv~K~tla~l~~aLe~y~~~ 272 (395)
T COG1921 216 LVSFSGDKLLGGPQAGIIVGKK--------------ELIEKLQSHPL-KRALRVDKETLAALEAALELYLQP 272 (395)
T ss_pred EEEEecchhcCCCccceEechH--------------HHHHHHHhhhh-hhhhhcCcHhHHHHHHHHHHHcCc
Confidence 9999999999999999999999 45555554321 111123447889999999999876
No 256
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.58 E-value=9.1e-14 Score=127.49 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=116.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+.......+++.+.+++.+.++ +++++ +++++|++ +...++.+++++||.|++++..+..+...
T Consensus 68 ~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~----i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~------- 136 (394)
T PRK06836 68 GYMPNAGYPEVREAIAESLNRRFGTPLTADH----IVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFY------- 136 (394)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCCCcCc----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH-------
Confidence 344445667777666666655443 45654 88888884 65557788899999999988655554321
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccH---HHHHHHHHh------cCCEEEE
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDY---ERIRKVCNK------QKAIMLA 166 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~------~g~~liv 166 (297)
.+..|.++..+ +.+++++.+|++++++.+++ ++++|++ +++| +|.+.|. ++|.++|++ ||+++|+
T Consensus 137 -~~~~g~~v~~v--~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~ 212 (394)
T PRK06836 137 -VDNHGGKLVVV--PTDTDTFQPDLDALEAAITP-KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLIS 212 (394)
T ss_pred -HHHcCCEEEEE--ecCCccCcCCHHHHHhhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 12223334334 55545578999999999987 8999988 6777 8988774 567777888 8999999
Q ss_pred ehhhhcccccccCCCCCCC--CccEEEecCCccCCCCC--ceEEEEecC
Q 022463 167 DMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLRGPR--GAMIFFRKG 211 (297)
Q Consensus 167 D~a~~~g~~~~~~~~~~~~--~~D~~~~s~~K~l~gp~--gG~i~~~~~ 211 (297)
|+++.--............ .-.+++.|++|.++.|. -|+++.+++
T Consensus 213 De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~ 261 (394)
T PRK06836 213 DEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPE 261 (394)
T ss_pred eccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHH
Confidence 9986432111000000011 23578899999875343 399988764
No 257
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.56 E-value=2.6e-13 Score=123.65 Aligned_cols=169 Identities=10% Similarity=0.003 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHHHcC----CCCCCCcceEEecCChH-HHHHHHHHhcCCCC-eEEEecCCCCCccccccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFR----LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHD-RIMALDLPHGGHLSHGYQTDTKKI 99 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g----~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd-~Vl~~~~~~~~~~~~~~~~~~~~~ 99 (297)
....++++.+.+++.+.++ +++++ |++|+|++ +...++.+++.+|| .|+++.+.+..... .+
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~----I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~--------~~ 133 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITPAN----ISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGI--------LA 133 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCHHH----EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHH--------HH
Confidence 3567788544444444321 66654 99999995 55446667777886 89998855544432 23
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhh---cCCcEEEE-cCCC-CCCcccHHHHHHHHHh-cCCEEEEehhhhcc
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVA-GASA-YARLYDYERIRKVCNK-QKAIMLADMAHISG 173 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~-~~~~-~G~~~~~~~i~~la~~-~g~~livD~a~~~g 173 (297)
+..|..+ ++++.+++++.+|++++++.+++ .++++|++ +++| +|.+.+.+++.++++- +++++|+|+++.--
T Consensus 134 ~~~g~~~--~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~ 211 (374)
T PRK02610 134 QTLGIPV--VRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEF 211 (374)
T ss_pred HHcCCEE--EEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEecccccc
Confidence 3344334 33445544578999999999874 48999998 7878 8999888877766542 48999999997421
Q ss_pred cccccCCCCCCCC-c-cEEEecCCccCC--CCCceEEEEec
Q 022463 174 LVAAGVIPSPFEY-A-DVVTTTTHKSLR--GPRGAMIFFRK 210 (297)
Q Consensus 174 ~~~~~~~~~~~~~-~-D~~~~s~~K~l~--gp~gG~i~~~~ 210 (297)
. .... ...+.. . -+++.|++|.++ |-+-|+++.++
T Consensus 212 ~-~~~~-~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~ 250 (374)
T PRK02610 212 S-QTTL-VGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHP 250 (374)
T ss_pred C-ccch-HHHHhcCCCEEEEEecchhccCcccceeeeecCH
Confidence 1 1000 000111 1 266789999873 34449999876
No 258
>PRK07908 hypothetical protein; Provisional
Probab=99.55 E-value=3.8e-13 Score=121.42 Aligned_cols=215 Identities=13% Similarity=0.068 Sum_probs=125.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 100 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 100 (297)
|+......+++ +.+++++++++++ |++|+|++ +...+++ +++|+ +++.. ++....... ++
T Consensus 54 Y~~~~g~~~lr----~aia~~~~~~~~~----I~it~Ga~~al~~~~~--l~~~~-viv~~---P~y~~~~~~-----~~ 114 (349)
T PRK07908 54 YPSTEDERRAR----AAVAARHGRTPDE----VLLLAGAAEGFALLAR--LRPRR-AAVVH---PSFTEPEAA-----LR 114 (349)
T ss_pred CCCccchHHHH----HHHHHHhCcChhh----EEECCCHHHHHHHHHh--cCCCe-EEEeC---CCChHHHHH-----HH
Confidence 44444556666 7888888998865 99999995 5543444 57765 45443 333322222 22
Q ss_pred eeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhccc--cc
Q 022463 101 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGL--VA 176 (297)
Q Consensus 101 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~--~~ 176 (297)
..|.++ ++++.+ .++.+|++.+ ++ +++++++ +++| +|.+.+.++|.++|++ +.++|+|++++--. .+
T Consensus 115 ~~G~~i--~~v~~~-~~~~~d~~~l----~~-~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~ 185 (349)
T PRK07908 115 AAGIPV--HRVVLD-PPFRLDPAAV----PD-DADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEP 185 (349)
T ss_pred HcCCEE--EeeccC-cccCcChhHh----cc-CCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCc
Confidence 334334 334455 3367888744 34 7899888 7888 8999999999999975 77899999975311 11
Q ss_pred ccCCCCCCCCcc-EEEecCCccC--CCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHH
Q 022463 177 AGVIPSPFEYAD-VVTTTTHKSL--RGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVA 253 (297)
Q Consensus 177 ~~~~~~~~~~~D-~~~~s~~K~l--~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a 253 (297)
..+.. .+..+ +++.|++|.+ .|.+-|+++.++ ++.+.+....... +.+....+++...
T Consensus 186 ~~l~~--~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~~a~~~~ 246 (349)
T PRK07908 186 ESLAG--DDLPGVLVLRSLTKTWSLAGLRVGYALGAP--------------DVLARLTRGRAHW---PVGTLQLEAIAAC 246 (349)
T ss_pred ccccc--ccCCCEEEEeecccccCCccceeeeeecCH--------------HHHHHHHhcCCCC---CccHHHHHHHHHH
Confidence 11111 11223 4556999965 345559999876 3444444332211 2223333333222
Q ss_pred HHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 254 LKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 254 l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++.-... .+++++++.++..+++.+.|+++
T Consensus 247 ~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~ 276 (349)
T PRK07908 247 CAPRAVA-EAAADAARLAADRAEMVAGLRAV 276 (349)
T ss_pred hcccchH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 2200001 24556777777788888888775
No 259
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.55 E-value=4.7e-13 Score=121.06 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..+++ +.+++++++++++ |++|+|++ +...++.++ .+ +.|+++.+.++.... .+...|..+
T Consensus 56 ~~~lr----~~ia~~~~~~~~~----i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~--------~~~~~g~~~ 117 (354)
T PRK06358 56 YLELR----KRIASFEQLDLEN----VILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYER--------ALKAFDAEI 117 (354)
T ss_pred HHHHH----HHHHHHhCCChhh----EEECCCHHHHHHHHHHHh-CC-CcEEEecCChHHHHH--------HHHHcCCee
Confidence 45566 8888888998875 99999995 554455554 44 578888755544322 122334334
Q ss_pred EeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 107 ETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 107 ~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
..+ +.+. +.+.+| +++.+.+.+ +++++++ +++| +|...+ +++|.++|+++++++|+|+++.- ....+..
T Consensus 118 ~~~--~~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~-~~~~~~~ 192 (354)
T PRK06358 118 EYA--ELTEETNFAAN-EIVLEEIKE-EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMD-FLEENET 192 (354)
T ss_pred EEE--eCccccCCCcc-HHHHHhhcc-CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccc-cCCCccc
Confidence 444 4442 345788 666666665 7899877 7888 897776 66888889999999999999642 2211101
Q ss_pred CCCC---CCcc--EEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHH
Q 022463 181 PSPF---EYAD--VVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVA 253 (297)
Q Consensus 181 ~~~~---~~~D--~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a 253 (297)
..++ +..+ +++.|++|.++ |-+-|+++..++ .+.+.+.....+ .+.+.+...++..+
T Consensus 193 ~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~-------------~~~~~~~~~~~~---~~~~~~~q~~~~~~ 256 (354)
T PRK06358 193 ISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNK-------------NLAEKLLQMREP---WSINTFADLAGQTL 256 (354)
T ss_pred hhHHHhccCCCCEEEEEechhhccCcchhheeeecCCH-------------HHHHHHHHhCCC---CcchHHHHHHHHHH
Confidence 1111 1112 67789999864 334499987542 333444333211 12333333444444
Q ss_pred HHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 254 LKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 254 l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
++ +..-+++.++..++..+++.+.|++.+.+
T Consensus 257 l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 287 (354)
T PRK06358 257 LD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGI 287 (354)
T ss_pred hc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 42 11023555666667778888888776553
No 260
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.54 E-value=3.3e-13 Score=126.35 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=112.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCC---CCCCCcceEEecCChH-HHHHHHHH-----hcCCCCeEEEecCCCCCcccccccc
Q 022463 24 GNEYIDMAESLCQKRALEAFRL---DPEKWGVNVQSLSGSP-SNFQVYTA-----LLKPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~---~~~~~~~~v~~~sG~~-~~~~~~~~-----~~~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
........|+.+++++.+..+. ++++ .+|++|+|++ ++..++.+ ++.|||+|+++.+.++.....
T Consensus 127 p~g~~~~~e~iv~~y~~~~~~~~~~~~~~--~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~---- 200 (521)
T TIGR03801 127 PDRMLPHSEKIVHQYLIQEMCGNKPPPGE--FDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEI---- 200 (521)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCCc--CeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHH----
Confidence 4455667777777777766442 2321 1499999995 55556655 689999999998655544321
Q ss_pred cccccceeeeeeEeeecccCCC------CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhc--C
Q 022463 95 DTKKISAVSIFFETMPYRLNES------TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQ--K 161 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~~------~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~--g 161 (297)
+.+.+..++.++++.++. ++.+|.+++++++++ ++++|++ +|+| +|.+.+ +++|.++|++| +
T Consensus 201 ----~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~ 275 (521)
T TIGR03801 201 ----PELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPD 275 (521)
T ss_pred ----HHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 223322234444444421 178999999998876 8999998 7888 898877 56777889886 9
Q ss_pred CEEEEehhhhcccccccCCCCCCC---CccEEEecCCccCC--CCCceEEEEecC
Q 022463 162 AIMLADMAHISGLVAAGVIPSPFE---YADVVTTTTHKSLR--GPRGAMIFFRKG 211 (297)
Q Consensus 162 ~~livD~a~~~g~~~~~~~~~~~~---~~D~~~~s~~K~l~--gp~gG~i~~~~~ 211 (297)
++||+|+++.. ... +.. .... .--+++.|++|.++ |-+-|+++.+++
T Consensus 276 l~II~DEvY~~-f~~-~~~-sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 276 LMILTDDVYGT-FVD-DFR-SLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKD 327 (521)
T ss_pred eEEEECCCchh-hcc-ccc-chhhhCCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence 99999999753 111 111 0001 11267889999863 333399998764
No 261
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.53 E-value=1.2e-12 Score=120.70 Aligned_cols=226 Identities=11% Similarity=0.040 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCccccccccccc-----ccceee
Q 022463 31 AESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTK-----KISAVS 103 (297)
Q Consensus 31 ~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~-----~~~~~g 103 (297)
...+..++++++++.+.+. .+++++|+.++..+++.+ ..+++.|++.+..+++........... ......
T Consensus 80 ~~~~l~~~l~~~~~~~~~~---v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T cd00610 80 PAVELAELLLALTPEGLDK---VFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL 156 (413)
T ss_pred HHHHHHHHHHHhCCCCCCE---EEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence 3444448999999865543 244456667888777766 367899999887655543222111000 000000
Q ss_pred eeeEeeecccCC-----CCCcCCHHHHHHHhhh--cCCcEEEEcCCC--CCCccc----HHHHHHHHHhcCCEEEEehhh
Q 022463 104 IFFETMPYRLNE-----STGYIDYDQLEKSATL--FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 104 ~~~~~v~~~~~~-----~~~~~d~~~l~~~l~~--~~~~~v~~~~~~--~G~~~~----~~~i~~la~~~g~~livD~a~ 170 (297)
...+.++.+. .....|++.+++.+++ .+++++++.+.+ .|...| +++|.++|++||+++|+|++|
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~ 234 (413)
T cd00610 157 --PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQ 234 (413)
T ss_pred --CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 1112223321 1234488999999875 245677774322 577776 899999999999999999998
Q ss_pred hccccccc-C---CCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHh--hhcccCCCCCCCc
Q 022463 171 ISGLVAAG-V---IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKI--NQAVFPGLQGGPH 243 (297)
Q Consensus 171 ~~g~~~~~-~---~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~t~~ 243 (297)
+. ....+ . .... ...|++++| |+++++.. |+++.++ ++.+.+ ...... ...+.+
T Consensus 235 ~g-~g~~g~~~~~~~~~-~~~d~~t~s--K~l~~g~~~g~~~~~~--------------~~~~~~~~~~~~~~-~t~~~~ 295 (413)
T cd00610 235 TG-FGRTGKMFAFEHFG-VEPDIVTLG--KGLGGGLPLGAVLGRE--------------EIMDAFPAGPGLHG-GTFGGN 295 (413)
T ss_pred cC-CCcCcchhhHhhcC-CCCCeEEEc--ccccCccccEEEEEcH--------------HHHHhhccCCCCCC-CCCCcC
Confidence 63 21111 0 0010 145776555 99977444 8888776 344443 111111 122345
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
...++++.++++.+.+. .+.++.+.+.+++.+.|+.+
T Consensus 296 ~~~~~a~~a~l~~l~~~----~~~~~~~~~~~~l~~~l~~~ 332 (413)
T cd00610 296 PLACAAALAVLEVLEEE----GLLENAAELGEYLRERLREL 332 (413)
T ss_pred HHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 56677778888887653 35566666666776666654
No 262
>PRK05839 hypothetical protein; Provisional
Probab=99.53 E-value=8.8e-13 Score=120.15 Aligned_cols=173 Identities=14% Similarity=0.046 Sum_probs=109.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEEecCChH-HHHHHHHHhc--CCCCeEEEecCCCCCcccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~~~sG~~-~~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
..|+...+..++++.+.+++++.+| ++++ +|++|+|++ +...++..++ ++||.|+++.+.++.....
T Consensus 54 ~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~----~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~---- 125 (374)
T PRK05839 54 NKYPKSAGEESLREAQRGFFKRRFKIELKEN----ELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGA---- 125 (374)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----eEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHH----
Confidence 4456566678888888888888877 4565 499999995 5544556554 5899999988555544332
Q ss_pred cccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEeh
Q 022463 95 DTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~ 168 (297)
+...|.++..+ +.+. +.+.+|.+.. .+ + ++++|++ +++| +|.+.+. ++|.++|+++|+++|+|+
T Consensus 126 ----~~~~g~~v~~v--~~~~~~~~~~d~~~~--~~-~-~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE 195 (374)
T PRK05839 126 ----AIASRAKVLLM--PLTKENDFTPSLNEK--EL-Q-EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDE 195 (374)
T ss_pred ----HHhcCCEEEEe--ecccccCCcCCcchh--hh-c-cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEecc
Confidence 22334334444 4442 2355555433 23 3 6899998 6888 8977765 467777899999999999
Q ss_pred hhhcccccccCCCCCC--------C--CccEEEecCCccC--CCCCceEEEEecC
Q 022463 169 AHISGLVAAGVIPSPF--------E--YADVVTTTTHKSL--RGPRGAMIFFRKG 211 (297)
Q Consensus 169 a~~~g~~~~~~~~~~~--------~--~~D~~~~s~~K~l--~gp~gG~i~~~~~ 211 (297)
+++- .......+... . .-=+++.|++|.+ .|-+-|+++.+++
T Consensus 196 ~Y~~-~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~ 249 (374)
T PRK05839 196 CYSE-IYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDAS 249 (374)
T ss_pred chhh-cccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHH
Confidence 9653 11100000000 0 0116778999964 4455599998763
No 263
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.52 E-value=4.7e-13 Score=121.18 Aligned_cols=219 Identities=13% Similarity=0.013 Sum_probs=130.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC---CCCCCCcceEEecCChH-HHHHHHHHh-cCCCCeEEEecCCCCCccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR---LDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g---~~~~~~~~~v~~~sG~~-~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
.|+...+..++++.+.+++.+.+| ++++ +|++|+|++ +...++..+ +++||.|++++++|++....
T Consensus 51 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~----~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~----- 121 (357)
T TIGR03539 51 GYPQTWGTPELREAIVDWLERRRGVPGLDPT----AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVG----- 121 (357)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCCCCcC----eEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHH-----
Confidence 355556667888777777777655 4455 499999985 544455666 79999999998777655332
Q ss_pred ccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhh
Q 022463 96 TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~ 170 (297)
+...|.++ +++ + |++.+ .+.++++|++ +++| +|.+.+ +++|.++|+++|+++|+|+++
T Consensus 122 ---~~~~g~~~--~~v--~------~~~~l----~~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y 184 (357)
T TIGR03539 122 ---ALLAGATP--VAA--D------DPTEL----DPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECY 184 (357)
T ss_pred ---HHhcCCEE--ecc--C------Chhhc----CccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecch
Confidence 22233222 322 2 22222 2237899988 7888 897776 557888899999999999997
Q ss_pred hcccccccCCCCCCC--------CccEEEecCCccC--CCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCC
Q 022463 171 ISGLVAAGVIPSPFE--------YADVVTTTTHKSL--RGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240 (297)
Q Consensus 171 ~~g~~~~~~~~~~~~--------~~D~~~~s~~K~l--~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (297)
.. ....+.....+. .-.+++.|++|.+ .|.+.|+++.+++ +.+.+....... ..
T Consensus 185 ~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~--------------~~~~~~~~~~~~-~~ 248 (357)
T TIGR03539 185 LE-LGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPA--------------LVAELLTVRKHA-GL 248 (357)
T ss_pred hh-hccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHH--------------HHHHHHHHHhhc-cc
Confidence 52 111110000000 1137788999975 5555699987663 333333221111 12
Q ss_pred CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 241 GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 241 t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.++.+...++..+|+ ....+++.+++.++..+++.+.|++.
T Consensus 249 ~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~~~ 289 (357)
T TIGR03539 249 MVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLKPALEKA 289 (357)
T ss_pred CCCHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444443 22145556666666777777777664
No 264
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.52 E-value=5.5e-13 Score=122.93 Aligned_cols=179 Identities=12% Similarity=0.069 Sum_probs=106.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHc--CCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAF--RLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~--g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
..|+..+...++++.+.+++.+.. ++++++ |++|+|++ +.. ++..++.|||+|+++.+.|+.........+.
T Consensus 70 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I~it~Ga~~al~-~l~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~ 144 (409)
T PRK07590 70 RGYGPEQGYDFLREKIAENDYQARGCDISADE----IFISDGAKCDTG-NILDIFGPDNTIAVTDPVYPVYVDTNVMAGR 144 (409)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCcCChhh----EEECCCHHHHHH-HHHHhcCCCCEEEEeCCCCcchHHHHHHcCC
Confidence 345555667788866666655444 456654 99999995 444 4556679999999998776665433322221
Q ss_pred ccccee-eeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHH---HHHHHHHhcCCEEEEehh
Q 022463 97 KKISAV-SIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYE---RIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 97 ~~~~~~-g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~---~i~~la~~~g~~livD~a 169 (297)
.++... |...+.++++.+++ +...|.+ +.++++|++ +++| +|.+.+.+ +|.++|++||+++|+|++
T Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~ 217 (409)
T PRK07590 145 TGEANEDGRYSGIVYLPCTAENNFVPELP-------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAA 217 (409)
T ss_pred cccccccccccceeEeecccccCCcccCc-------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEcc
Confidence 110000 00011344455422 2333322 137899988 7888 89777654 777778999999999999
Q ss_pred hhcccccccCCCCCC---CC---ccEEEecCCccCC--CCCceEEEEecC
Q 022463 170 HISGLVAAGVIPSPF---EY---ADVVTTTTHKSLR--GPRGAMIFFRKG 211 (297)
Q Consensus 170 ~~~g~~~~~~~~~~~---~~---~D~~~~s~~K~l~--gp~gG~i~~~~~ 211 (297)
+.--. ..+....++ .+ .-+++.|++|.++ |-+-|+++..++
T Consensus 218 Y~~~~-~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~ 266 (409)
T PRK07590 218 YEAFI-SDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKE 266 (409)
T ss_pred chhhc-cCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHH
Confidence 75311 111001111 11 1256789999873 334499998774
No 265
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.51 E-value=7.3e-13 Score=119.00 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 27 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
...+++ +.+++++++++++ |++|+|++ +...++..+ +||.|+++.+.|+.... .++..|..
T Consensus 56 g~~~lr----~~ia~~~~~~~~~----I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~--------~~~~~g~~ 117 (337)
T PRK03967 56 TSDPLR----EAIAEFYGLDAEN----IAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYSF--------YAKLNGIP 117 (337)
T ss_pred CHHHHH----HHHHHHhCcCcce----EEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHHH--------HHHHcCCe
Confidence 456666 7888888988764 99999995 444344444 79999999866543211 12233333
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 183 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~ 183 (297)
+ ++++.+ +++.+|++.+++.+ + +++++++ +++| +|.+.+.++|.++++ +++++|+|+++.- .........
T Consensus 118 ~--~~v~~~-~~~~~d~~~l~~~~-~-~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~-~~~~~~~~~- 189 (337)
T PRK03967 118 V--IDVPLK-EDFTIDGERIAEKA-K-NASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAE-FSGKSLIGL- 189 (337)
T ss_pred E--EEeecC-CCCCcCHHHHHHhc-c-CCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhh-hcccchHHH-
Confidence 4 444455 45789999998865 3 6888888 7888 899999999999995 7999999999752 111000000
Q ss_pred CC--CccEEEecCCccCC--CCCceEEEEecC
Q 022463 184 FE--YADVVTTTTHKSLR--GPRGAMIFFRKG 211 (297)
Q Consensus 184 ~~--~~D~~~~s~~K~l~--gp~gG~i~~~~~ 211 (297)
.. .-=+++.|++|.++ |-+-|+++.+++
T Consensus 190 ~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~ 221 (337)
T PRK03967 190 IDEYPNLILLRTFSKAFGLAGIRAGYAIANEE 221 (337)
T ss_pred HhhCCCEEEEecchHhhcchhhhheeeecCHH
Confidence 00 11266789999874 334499998763
No 266
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.51 E-value=7.3e-13 Score=120.23 Aligned_cols=219 Identities=13% Similarity=0.021 Sum_probs=130.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcC---CCCCCCcceEEecCChH-HHHHHHHHh-cCCCCeEEEecCCCCCccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFR---LDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g---~~~~~~~~~v~~~sG~~-~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
.|+......++++.+.+++.+..| +++++ |++|+|++ +...++..+ +++||.|+++.+.|+.+....
T Consensus 57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~----I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~---- 128 (364)
T PRK07865 57 GYPTTAGTPELREAIVGWLARRRGVTGLDPAA----VLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGA---- 128 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHHcCCCCCCccc----EEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHH----
Confidence 466556677888777788877766 44554 99999995 544455666 699999999987776654322
Q ss_pred ccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhh
Q 022463 96 TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~ 170 (297)
...|.++ ++++ ++++++. .++++|++ +++| +|.+.+ +++|.++|+++|+++|+|+++
T Consensus 129 ----~~~g~~~--~~~~--------~~~~l~~----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y 190 (364)
T PRK07865 129 ----RLAGATV--VRAD--------SLTELGP----QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECY 190 (364)
T ss_pred ----HhcCCEE--EecC--------ChhhCCc----ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecch
Confidence 2233223 2221 1233322 37899998 6878 897766 457888899999999999997
Q ss_pred hcccccccCCCCCC-------C-CccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCC
Q 022463 171 ISGLVAAGVIPSPF-------E-YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240 (297)
Q Consensus 171 ~~g~~~~~~~~~~~-------~-~~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (297)
..-..... ....+ . .--+++.|++|.++ |.+.|+++.+++ +.+.+....... ..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~--------------~~~~~~~~~~~~-~~ 254 (364)
T PRK07865 191 LELGWDAE-PVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPA--------------LVAELLEVRKHA-GM 254 (364)
T ss_pred hhhccCCC-CCccccccccCCccceEEEEeechhccCCCceeeEEEecCHH--------------HHHHHHHHHHhc-CC
Confidence 63221110 00000 0 12378899999863 445599887763 333333221111 11
Q ss_pred CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 241 GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 241 t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+.+.+...++..+++ +...+++.+++.+...+++.+.|++.
T Consensus 255 ~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~ 295 (364)
T PRK07865 255 MVPAPVQAAMVAALG---DDAHVREQRERYARRRAVLRPALEAA 295 (364)
T ss_pred CcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 223344444444443 22134556666667777777777664
No 267
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=99.50 E-value=3.5e-13 Score=120.02 Aligned_cols=247 Identities=13% Similarity=0.122 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh---cCC--C---CeEEEecCCCCCccccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---LKP--H---DRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~---~~~--g---d~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
+..+.+++++-.+++.+|+.+.+.+ ...++.|+.+.+++.... .+. | .+++++...|.++-..
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~~~~~--g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~------- 186 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAPSDSC--GCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKA------- 186 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCCcccc--CccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHH-------
Confidence 5678899999999999999986653 333444444433232222 111 1 2355555444333221
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCC--CCCcccHHHHHHHHHh-cCCEEEEehhhhccc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA--YARLYDYERIRKVCNK-QKAIMLADMAHISGL 174 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~--~G~~~~~~~i~~la~~-~g~~livD~a~~~g~ 174 (297)
+..-+..++.+ ++++.++++|+.++.+++++ +|.+++....+ +|...|+++|.++..+ +++++++|++-..-.
T Consensus 187 -a~yf~v~l~~V--~~~~~~~~~D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi 262 (491)
T KOG1383|consen 187 -ARYFEVELREV--PLDEGDYRVDPGKVVRMIDE-NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFI 262 (491)
T ss_pred -HhhEEEEEEee--eccccceEecHHHHHHHhcc-ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCcccc
Confidence 22223224344 56767899999999999998 89888885334 6899999999999998 999999999843322
Q ss_pred cc-ccCC--CCCCC--CccEEEecCCccCCCCCc-eEEEEecCc-hhh--ccCCccchhhHHHHhhhcc-cCCCCCCCch
Q 022463 175 VA-AGVI--PSPFE--YADVVTTTTHKSLRGPRG-AMIFFRKGV-KEI--NKQGKEVFYDYEEKINQAV-FPGLQGGPHN 244 (297)
Q Consensus 175 ~~-~~~~--~~~~~--~~D~~~~s~~K~l~gp~g-G~i~~~~~~-~~~--~~~g~~~~~~~~~~~~~~~-~~~~~~t~~~ 244 (297)
.| .... ++-|. ++--++.++||+-..|.| +.++.+.+- +.. ... .+.+...+ -|...++.+.
T Consensus 263 ~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~--------~~w~Gg~y~s~TlngSR~g 334 (491)
T KOG1383|consen 263 NPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFH--------TDWLGGIYASPTLNGSRPG 334 (491)
T ss_pred ccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEe--------ccccCccccCcccccCCcc
Confidence 32 2111 22221 566788999999889999 877776642 111 000 00011111 1333667777
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 295 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~ 295 (297)
..+++.++++-.+..+ |+.+.-+++.+.+.++++++++.+.|. +-|.|-
T Consensus 335 ~~va~~wa~~~~lG~e-GY~~~~~~ive~~~~l~egie~i~~i~-i~gkp~ 383 (491)
T KOG1383|consen 335 SQVAAQWAALMSLGEE-GYRENTQNIVETARKLREGIENIKGIK-IVGKPL 383 (491)
T ss_pred cHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhhhccccce-ecCCCc
Confidence 8889999999999988 999999999999999999999988776 555564
No 268
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=99.50 E-value=5.2e-12 Score=110.01 Aligned_cols=214 Identities=18% Similarity=0.126 Sum_probs=135.3
Q ss_pred EEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc
Q 022463 54 VQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 132 (297)
Q Consensus 54 v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~ 132 (297)
|++|+|. ++...++.++.+||..||+|.. ++ |+| ...+...|.+++...+ ..+.++++|++.++.++++
T Consensus 129 V~ltsGC~qAIe~~i~~LA~p~aNILlPrP---Gf--p~Y---~~~a~~~~lEVR~ydl-LPe~~weIDL~~veal~DE- 198 (447)
T KOG0259|consen 129 VVLTSGCSQAIELAISSLANPGANILLPRP---GF--PLY---DTRAIYSGLEVRYYDL-LPEKDWEIDLDGVEALADE- 198 (447)
T ss_pred eEEeccchHHHHHHHHHhcCCCCceecCCC---CC--chH---HHhhhhcCceeEeecc-cCcccceechHHHHHhhcc-
Confidence 9999998 6888899999999999998873 33 333 2234444444444332 2225789999999999998
Q ss_pred CCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhcccccccCCC----CCCC-CccE-EEecCCccCCCC
Q 022463 133 RPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP----SPFE-YADV-VTTTTHKSLRGP 201 (297)
Q Consensus 133 ~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~g~~~~~~~~----~~~~-~~D~-~~~s~~K~l~gp 201 (297)
+|.++++ +++| .|.+.. +++|+++|+++++++|.|+.+. ...++-.+ ..|. -+-+ .+.+.+|-..-|
T Consensus 199 NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~--~~vfg~~pfvpmg~fssiVPVitlggisKrW~VP 276 (447)
T KOG0259|consen 199 NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYG--HTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVP 276 (447)
T ss_pred CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcc--eeecCCCCccchhhccccCceEeecccccccccC
Confidence 8888777 8888 786654 6799999999999999999842 22221111 1111 2333 456778855455
Q ss_pred Cc--eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHh
Q 022463 202 RG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVS 279 (297)
Q Consensus 202 ~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~ 279 (297)
+= |.|+..+.. |-..+....+.+.. +..+...|+...-+|+-.-|..--++ -++......+..++.-++
T Consensus 277 GWRlGWi~~hD~~------gvf~~~~~~q~~~~--~~~~~~~p~TiiQ~AlP~IL~kTp~e-fF~k~~~~lk~na~l~y~ 347 (447)
T KOG0259|consen 277 GWRLGWIALHDPR------GVFRDTKVVQGIKN--FLDIIPGPATIIQGALPDILEKTPEE-FFDKKLSFLKSNADLCYS 347 (447)
T ss_pred CceeeeEEEeccc------ccccchHHHHHHHH--HHhccCCccHhHHHHhHHHHHhChHH-HHHHHHHHHHhhHHHHHH
Confidence 43 988887742 10000011111111 11223345555555554444433334 566777777888899999
Q ss_pred hccCCCCcc
Q 022463 280 NQNNSENIE 288 (297)
Q Consensus 280 ~l~~~~~~~ 288 (297)
.|+++|.+.
T Consensus 348 ~Lk~IP~l~ 356 (447)
T KOG0259|consen 348 RLKDIPCLT 356 (447)
T ss_pred HHhcCCCcc
Confidence 999998765
No 269
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.8e-13 Score=118.59 Aligned_cols=221 Identities=18% Similarity=0.112 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 105 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (297)
....++| +..|+++|.+.. ++|..|-..|...+.+++.||..|+..+..|.|... |+++.|+.
T Consensus 182 ~~hkelE----~l~A~f~g~e~a-----~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~~--------GaRLSgAt 244 (519)
T KOG1357|consen 182 EEHKELE----ELVARFLGVEDA-----IVFSMGFATNSMNIPSLLGKGSLIISDELNHASLIT--------GARLSGAT 244 (519)
T ss_pred HHHHHHH----HHHHHhcCCcce-----EEEeccccccccCcceeecCCcceeeccccchheec--------cccccCce
Confidence 3344555 889999999874 889888877766788899999999999999988854 67778877
Q ss_pred eEeeecccCCCCCcCCHHHHHHHhhh---------cCC--cEEEE--c-CCCCCCcccHHHHHHHHHhcCCEEEEehhhh
Q 022463 106 FETMPYRLNESTGYIDYDQLEKSATL---------FRP--KLIVA--G-ASAYARLYDYERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d~~~l~~~l~~---------~~~--~~v~~--~-~~~~G~~~~~~~i~~la~~~g~~livD~a~~ 171 (297)
.+.. ..+ |.++||+.|++ ++| +++++ + .+.-|.+.++.++..++|++.++++.|+||+
T Consensus 245 iRVf--kHN------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHS 316 (519)
T KOG1357|consen 245 TRVF--RHN------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHS 316 (519)
T ss_pred EEEE--ecC------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeecccc
Confidence 6544 233 45566666654 112 35555 4 3446899999999999999999999999999
Q ss_pred ccccccc-CC-----CCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCC-CCCCch
Q 022463 172 SGLVAAG-VI-----PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHN 244 (297)
Q Consensus 172 ~g~~~~~-~~-----~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~t~~~ 244 (297)
.|.++.. .- ......+|++...+.|++ |..||+|.++++ ..+.+........ ..+.+.
T Consensus 317 iGA~g~tGrgvce~~g~d~~dvDImMGtftKSf-ga~GGyiagsk~--------------lid~lrt~s~~~~yat~~sp 381 (519)
T KOG1357|consen 317 IGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSF-GAAGGYIAGSKE--------------LIDYLRTPSPSALYATSLSP 381 (519)
T ss_pred ccccCCCCcceeeccCCCchhheeecceehhhc-ccccceecCcHH--------------HHhhhccCCCceeecccCCh
Confidence 9998531 11 011126899999999986 557899998883 4444433221111 233444
Q ss_pred HHHHHHHHHHHHHhhhc---ChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 245 HTITGLAVALKQVCTLI---TFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~---g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
+.......+++.+..++ ..++..++..+...+|+..|+...+
T Consensus 382 pvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gf 426 (519)
T KOG1357|consen 382 PVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGF 426 (519)
T ss_pred HHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcE
Confidence 55556667777776432 3566777788899999999988775
No 270
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.49 E-value=1.6e-12 Score=121.88 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=114.3
Q ss_pred cCCCchhHHHHHHHHHH-HHHHHcCC--CC-CCCcceEEecCChH-HHHHHHHH-----hcCCCCeEEEecCCCCCcccc
Q 022463 21 YYGGNEYIDMAESLCQK-RALEAFRL--DP-EKWGVNVQSLSGSP-SNFQVYTA-----LLKPHDRIMALDLPHGGHLSH 90 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~-~la~~~g~--~~-~~~~~~v~~~sG~~-~~~~~~~~-----~~~~gd~Vl~~~~~~~~~~~~ 90 (297)
.|+......++++.+.+ .+.+..+. .+ ++ .+|++|+|++ ++..++.+ ++.|||+|+++.+.++....
T Consensus 129 ~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~--~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~- 205 (527)
T PRK09275 129 NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGE--FDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLE- 205 (527)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCc--CeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHH-
Confidence 36666666676665444 44443332 22 11 1499999985 55556654 68999999999865544432
Q ss_pred cccccccccceeeeeeEeeecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHh--cCC
Q 022463 91 GYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNK--QKA 162 (297)
Q Consensus 91 ~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~--~g~ 162 (297)
.+.+.+..++.++++.++ +++.+|++++++++++ ++++|++ +|+| +|.+.+ +++|.++|++ +++
T Consensus 206 -------~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l 277 (527)
T PRK09275 206 -------IPELPRYDLEVVHINADEENEWQYPDSELEKLRDP-SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDL 277 (527)
T ss_pred -------HHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 223333335556655543 3578999999998887 8999998 7888 898877 5677788854 599
Q ss_pred EEEEehhhhcccccccCCCCCCC---CccEEEecCCccCC--CCCceEEEEecC
Q 022463 163 IMLADMAHISGLVAAGVIPSPFE---YADVVTTTTHKSLR--GPRGAMIFFRKG 211 (297)
Q Consensus 163 ~livD~a~~~g~~~~~~~~~~~~---~~D~~~~s~~K~l~--gp~gG~i~~~~~ 211 (297)
+||+|+++..- .. .... .+. .--+++.|++|.++ |-+-|+++.+++
T Consensus 278 ~II~DEvY~~f-~~-~~~s-~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 278 MIITDDVYGTF-VD-DFRS-LFAVLPYNTILVYSFSKYFGATGWRLGVIALHED 328 (527)
T ss_pred EEEECCCChhh-cc-cccC-HHHhCCCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence 99999987531 11 1110 000 12367789999863 333399998875
No 271
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.49 E-value=2.2e-12 Score=114.45 Aligned_cols=225 Identities=12% Similarity=0.113 Sum_probs=137.1
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh---cC-C-CCeEEEecCCCCCc-cccccccccc----c--cceeee
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---LK-P-HDRIMALDLPHGGH-LSHGYQTDTK----K--ISAVSI 104 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~---~~-~-gd~Vl~~~~~~~~~-~~~~~~~~~~----~--~~~~g~ 104 (297)
++|+++.+ ..+. .++.+||+.+|.+++... .. + ..+|+...+.+++. +.....-.+. + ..+.|
T Consensus 91 ~~L~~~s~-~~d~---vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g- 165 (404)
T COG4992 91 EKLVELSP-FADR---VFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPG- 165 (404)
T ss_pred HHHHhhCc-cccE---EEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCC-
Confidence 77778886 3322 244478888999877654 22 2 34788777765443 2222211111 1 11111
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCC-C-CCCc----ccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS-A-YARL----YDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~-~-~G~~----~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
+..+ + .-|++.+++++++ +|.+|++-+. . -|.. .-+++++++|++||+++|.|+.|+.--.-..
T Consensus 166 -~~~v--p------fnDi~al~~ai~~-~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk 235 (404)
T COG4992 166 -FRHV--P------FNDIEALEAAIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK 235 (404)
T ss_pred -ceec--C------CCCHHHHHHHhcc-CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch
Confidence 1111 2 3489999999999 9999999322 2 3433 2367999999999999999999963211111
Q ss_pred CCC--CCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHH
Q 022463 179 VIP--SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 255 (297)
Q Consensus 179 ~~~--~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~ 255 (297)
+.. +-.-.+|+++.. |.|+|.-- |.++.++ .+.+.+.+..-.+ +..-|.+.+++..++|+
T Consensus 236 ~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~~--------------~~~~~~~~G~HgS-TfGGNpLacAv~~a~l~ 298 (404)
T COG4992 236 LFAYEHYGVEPDILTLA--KALGGGFPIGAMLATE--------------EIASAFTPGDHGS-TFGGNPLACAVALAVLE 298 (404)
T ss_pred HHHHHHhCCCCCEEEee--ccccCCccceeeEEch--------------hhhhcCCCCcccC-CCCcCHHHHHHHHHHHH
Confidence 110 000045888777 99987433 6666655 2333222221111 11235688888889999
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
.+.+++-.++++++...+.+.|.+....++.+++++|+
T Consensus 299 ~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~ 336 (404)
T COG4992 299 VLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGR 336 (404)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecc
Confidence 99988556777777777777777777777889999987
No 272
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.48 E-value=4.5e-12 Score=116.47 Aligned_cols=223 Identities=12% Similarity=0.065 Sum_probs=127.1
Q ss_pred HHHHHHcCCC-CCCCcceEEe-cCChHHHHHHHHHhcCCC-CeEEEecCCCCCcccccccccc-cc--cceeeeeeEeee
Q 022463 37 KRALEAFRLD-PEKWGVNVQS-LSGSPSNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDT-KK--ISAVSIFFETMP 110 (297)
Q Consensus 37 ~~la~~~g~~-~~~~~~~v~~-~sG~~~~~~~~~~~~~~g-d~Vl~~~~~~~~~~~~~~~~~~-~~--~~~~g~~~~~v~ 110 (297)
++++++++.+ ++. +++ ++|+.++..+++....+| +.|+..+..|++.......... .. ..+.......+.
T Consensus 92 ~~l~~~~~~~~~~~----v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (398)
T PRK03244 92 ERLVELLGAPEGGR----VFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEH 167 (398)
T ss_pred HHHHHhCCCCCCCE----EEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceE
Confidence 7788888854 233 555 555578887877665565 4566555555444211110000 00 000000000111
Q ss_pred cccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc----HHHHHHHHHhcCCEEEEehhhhcccccccC-C--C
Q 022463 111 YRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-I--P 181 (297)
Q Consensus 111 ~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~~-~--~ 181 (297)
++. .|++.+++.+.+ ++++|++ ...| +|...| +++|.++|++||+++|+|++|+ |.-..+. . .
T Consensus 168 ~~~------~d~~~l~~~~~~-~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~ 239 (398)
T PRK03244 168 VPY------GDVDALAAAVDD-DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQ 239 (398)
T ss_pred eCC------CCHHHHHHhhcC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhh
Confidence 111 378999998865 8888888 4444 677776 8899999999999999999985 3211110 0 0
Q ss_pred CCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhh
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 260 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~ 260 (297)
...-..|++++| |+|++... |+++.+++ +.+.+....... ..+.+...+++..++|+.+.+.
T Consensus 240 ~~~~~pDi~t~s--K~l~~G~~ig~~~~~~~--------------~~~~~~~~~~~~-t~~~~~~~~aaa~a~l~~~~~~ 302 (398)
T PRK03244 240 HDGVTPDVVTLA--KGLGGGLPIGACLAFGP--------------AADLLTPGLHGS-TFGGNPVACAAALAVLDTIASE 302 (398)
T ss_pred hhCCCCCEEEEc--hhhhCCcccEEEEEcHH--------------HHhhccCCCCcC-CCCCCHHHHHHHHHHHHHHHhc
Confidence 000146877665 99975333 88887773 344333221111 1233456677777777766533
Q ss_pred cChhhHHHHhhhhHHHHHhhccCC--CCcccccC
Q 022463 261 ITFSHIHVFSLHVYPAFVSNQNNS--ENIEEDKG 292 (297)
Q Consensus 261 ~g~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~g 292 (297)
...++.+++.++|.+.|+++ +.+.+++|
T Consensus 303 ----~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g 332 (398)
T PRK03244 303 ----GLLENAERLGEQLRAGIEALGHPLVDHVRG 332 (398)
T ss_pred ----cHHHHHHHHHHHHHHHHHhcCCCceeeEee
Confidence 35667777788888888774 33344444
No 273
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.47 E-value=3.8e-12 Score=116.88 Aligned_cols=216 Identities=13% Similarity=0.083 Sum_probs=128.3
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc---------CCC-CeEEEecCCCCCc-ccccccccc------ccc
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL---------KPH-DRIMALDLPHGGH-LSHGYQTDT------KKI 99 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~---------~~g-d~Vl~~~~~~~~~-~~~~~~~~~------~~~ 99 (297)
++++++++.+. .++++||+.++..+++... ++| ++|+.....+++. ......... ...
T Consensus 89 ~~l~~~~~~~~-----~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~ 163 (396)
T PRK04073 89 EKVAKLTGKDM-----VLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGP 163 (396)
T ss_pred HHHHhcCCCCe-----EEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCC
Confidence 77777776542 4777899988887776542 133 6788776654443 222111000 000
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccc----HHHHHHHHHhcCCEEEEehhhh-c
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD----YERIRKVCNKQKAIMLADMAHI-S 172 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~-~~~-~G~~~~----~~~i~~la~~~g~~livD~a~~-~ 172 (297)
...+ + ..++. .|++++++.+++ ++++|+++ ++| +|...| +++|.++|++||+++|+|++|+ .
T Consensus 164 ~~~~--~--~~~~~------~d~~~l~~~i~~-~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~ 232 (396)
T PRK04073 164 MLPG--I--KKIPY------GDLEALKAAITP-NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGL 232 (396)
T ss_pred CCCC--c--eEeCC------CCHHHHHHhccc-CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCC
Confidence 0111 1 11111 278999999876 88888884 444 676655 7899999999999999999987 2
Q ss_pred cccc----ccCCCCCCCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHH
Q 022463 173 GLVA----AGVIPSPFEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHT 246 (297)
Q Consensus 173 g~~~----~~~~~~~~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~ 246 (297)
|... .+.... .+|++++| |.++++. .|+++.++ ++.+.+....... ..+.+...
T Consensus 233 g~~g~~~~~~~~~~---~pdi~~~s--K~lg~gg~~ig~~~~~~--------------~i~~~~~~~~~~~-t~~~~~~~ 292 (396)
T PRK04073 233 GRTGKLFACDWDNV---TPDMYILG--KALGGGVFPISCVAANR--------------DILGVFTPGSHGS-TFGGNPLA 292 (396)
T ss_pred CcCcHHHHhhhcCC---CCCEEEec--ccccCCCCcceEEEEcH--------------HHHhhhcCCCCCC-CCCCCHHH
Confidence 2111 111111 47888765 9887653 38888877 3444443221111 22335566
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC--CcccccC
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE--NIEEDKG 292 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~g 292 (297)
.++..++|+.+.+. + +.++.+++.+++.+.|+++. .+.+++|
T Consensus 293 ~aaa~aaL~~~~~~-~---l~~~~~~~~~~l~~~L~~l~~~~i~~~~~ 336 (396)
T PRK04073 293 CAVSIAALEVLEEE-K---LPERSLELGEYFKEQLKEIDNPMIKEVRG 336 (396)
T ss_pred HHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHhhcCCcccceec
Confidence 77777888877544 3 44556667788888777653 3444444
No 274
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.47 E-value=4.6e-12 Score=116.07 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=124.4
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh----cCCCC----eEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL----LKPHD----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~----~~~gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
++++++++.+ . .++++||+.++..+++.. ..+|| +|++.+..+++................+ +
T Consensus 80 ~~l~~~~~~~--~---v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~--~-- 150 (389)
T PRK01278 80 ERLVENSFAD--K---VFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEG--F-- 150 (389)
T ss_pred HHHHhhCCCC--E---EEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhccc--C--
Confidence 6676766443 2 355567778888776655 45666 8998887766554332211110000000 0
Q ss_pred eecccCCCCC----cCCHHHHHHHhhhcCCcEEEEcCCC--CC-Cc---ccHHHHHHHHHhcCCEEEEehhhhccccccc
Q 022463 109 MPYRLNESTG----YIDYDQLEKSATLFRPKLIVAGASA--YA-RL---YDYERIRKVCNKQKAIMLADMAHISGLVAAG 178 (297)
Q Consensus 109 v~~~~~~~~~----~~d~~~l~~~l~~~~~~~v~~~~~~--~G-~~---~~~~~i~~la~~~g~~livD~a~~~g~~~~~ 178 (297)
. +.. .+. ..|++.+++.+++ ++++|++.+.+ .| .+ .++++|.++|++||+++|+|++|+ |....+
T Consensus 151 ~--~~~-~~~~~~~~~d~~~l~~~l~~-~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g 225 (389)
T PRK01278 151 G--PLV-PGFDQVPFGDIEALKAAITP-NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTG 225 (389)
T ss_pred C--CCC-CCceEeCCCCHHHHHHhhCC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCC
Confidence 0 000 111 2589999999986 89999994333 34 22 367899999999999999999986 321111
Q ss_pred -CCCC-CCC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHH
Q 022463 179 -VIPS-PFE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 254 (297)
Q Consensus 179 -~~~~-~~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al 254 (297)
.... .+. ..|++++ +|.+++. +.|+++.+++ +.+.+....... ..+.+....++..++|
T Consensus 226 ~~~~~~~~~~~pdi~t~--sK~l~~G~~ig~~~~~~~--------------~~~~~~~~~~~~-t~~~~~~~~aaa~a~l 288 (389)
T PRK01278 226 KLFAHEWAGVTPDIMAV--AKGIGGGFPLGACLATEE--------------AAKGMTPGTHGS-TYGGNPLAMAVGNAVL 288 (389)
T ss_pred cceeecccCCCCCEEEE--ehhccCCcceEEEEEcHH--------------HHhccCCCCCCC-CCCccHHHHHHHHHHH
Confidence 0000 001 3576655 5988642 3488887773 333333221111 2234567777778888
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhccCCC-CcccccC
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQNNSE-NIEEDKG 292 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~g 292 (297)
+.+.+..-.+++++....+.+.+.+..+..+ -+.+++|
T Consensus 289 ~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g 327 (389)
T PRK01278 289 DVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRG 327 (389)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEec
Confidence 8876541234455544445554444333344 2344444
No 275
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.47 E-value=5.2e-13 Score=116.27 Aligned_cols=175 Identities=20% Similarity=0.212 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccccc-ccccceeee
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD-TKKISAVSI 104 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~~~~~~g~ 104 (297)
..-+.+| +-.|+.||++..- +...+.|||.+...++.++++|||+++.....-..++.-...+. ...-.+...
T Consensus 54 ~GRd~le----~iyA~vfgaE~AL--VRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~ 127 (403)
T PF06838_consen 54 IGRDKLE----RIYADVFGAEDAL--VRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEF 127 (403)
T ss_dssp HHHHHHH----HHHHHHCT-SEEE--EETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGG
T ss_pred ccHHHHH----HHHHHHhCchhhh--hcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHh
Confidence 5566777 8899999998653 45567899987777899999999999975432111111000000 000111111
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCC-CCC-----CcccHHHHHHHHHhc--CCEEEEehhhhccccc
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS-AYA-----RLYDYERIRKVCNKQ--KAIMLADMAHISGLVA 176 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~-~~G-----~~~~~~~i~~la~~~--g~~livD~a~~~g~~~ 176 (297)
.+....+++. +++.+|++.+++++++ +||+|.+--| .|. .+.+++++.+++|+. ++.++||-++.= .-
T Consensus 128 Gi~Y~~v~L~-~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGE--Fv 203 (403)
T PF06838_consen 128 GIKYREVPLT-EDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGE--FV 203 (403)
T ss_dssp T-EEEE--B--TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTT--TT
T ss_pred CceeEEEeec-CCCCcCHHHHHHhhcc-CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcce--ec
Confidence 1233333455 5689999999999997 9999999211 132 445666666777765 789999998432 22
Q ss_pred ccCCCCCCC-CccEEEecCCccCCC---CCceEEEEecCc
Q 022463 177 AGVIPSPFE-YADVVTTTTHKSLRG---PRGAMIFFRKGV 212 (297)
Q Consensus 177 ~~~~~~~~~-~~D~~~~s~~K~l~g---p~gG~i~~~~~~ 212 (297)
...+ |.+ |+|++..|.-|+.+| |.||+|..++++
T Consensus 204 E~~E--P~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~l 241 (403)
T PF06838_consen 204 ETQE--PTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDL 241 (403)
T ss_dssp SSS---GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHH
T ss_pred cccC--ccccchhheeccceeCCCCCccCcCCEEechHHH
Confidence 1112 122 899999999999877 888999999975
No 276
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=99.47 E-value=3.4e-13 Score=114.24 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=161.9
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChHHHHH-HHHHhcCCCC---eEEEecCCCCCcccccccccccccceeeeeeEee
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ-VYTALLKPHD---RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 109 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~-~~~~~~~~gd---~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 109 (297)
-+...++.+.|++.++ |.+.+.-++|+. ++.++.+|-. +|+.-. .++.+..|.++.+ +++.|..++-.
T Consensus 115 ~il~l~~~iVGA~e~E----vavmNsLTvNlh~Ll~sFyKPTekR~KILlE~---kaFPSDhYAiesQ-~~lhG~~~e~s 186 (465)
T KOG3846|consen 115 PILPLLAPIVGAQENE----VAVMNSLTVNLHSLLISFYKPTEKRFKILLEK---KAFPSDHYAIESQ-CKLHGISPENS 186 (465)
T ss_pred hhhhhhhhhccCCchh----hhhHhhhhhHHHHHHHHhcCCcchhhhhhhcc---CCCCchHHHHHhh-hhhcCCChHHh
Confidence 3557889999998765 778777777765 4455666643 577444 4444434443322 34444443333
Q ss_pred ecccCCCC--CcCCHHHHHHHhhhcCC--cEEEEc-CCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC
Q 022463 110 PYRLNEST--GYIDYDQLEKSATLFRP--KLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 183 (297)
Q Consensus 110 ~~~~~~~~--~~~d~~~l~~~l~~~~~--~~v~~~-~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~ 183 (297)
.+.++++. ..+..+++.+.|..+.- .+|.++ ... +|...++.+|...-+..|+++-.|-||++|-+|+-++.|
T Consensus 187 m~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdW- 265 (465)
T KOG3846|consen 187 MIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDW- 265 (465)
T ss_pred eEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeec-
Confidence 33344433 45666788888876332 333334 333 699999999998888889999999999999999999999
Q ss_pred CCCccEEEecCCccCCCC-Cc-eEEEEecCch--hh-ccCCccchhhHHHHhh--h--cccCC----CCCCCchHHHHHH
Q 022463 184 FEYADVVTTTTHKSLRGP-RG-AMIFFRKGVK--EI-NKQGKEVFYDYEEKIN--Q--AVFPG----LQGGPHNHTITGL 250 (297)
Q Consensus 184 ~~~~D~~~~s~~K~l~gp-~g-G~i~~~~~~~--~~-~~~g~~~~~~~~~~~~--~--~~~~~----~~~t~~~~~~~al 250 (297)
++||.|++++|++++. .| |.+++-.+.. .+ .+.||++. +...++. . ...|+ +.++|++..+.++
T Consensus 266 --gVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh-~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al 342 (465)
T KOG3846|consen 266 --GVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGH-DPSKRFQMDNVLELIPGALGFRISNPPIIDVVAL 342 (465)
T ss_pred --CCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccC-CcchhhhhccccccCccccccccCCCcHhHHHHH
Confidence 9999999999998764 44 6666655432 12 45566543 1111111 1 11222 3789999999999
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
..+|+.+.+. .+..++.+..-|..|+..-++.+
T Consensus 343 ~~SLe~F~q~-~~~~lRkrS~lLTgYleyL~k~~ 375 (465)
T KOG3846|consen 343 RSSLELFAQF-NINELRKRSLLLTGYLEYLLKAS 375 (465)
T ss_pred HhhHHHHHHh-hHHHHhhhhhhHHhHHHHHHHHh
Confidence 9999999999 89999999998888877666544
No 277
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.47 E-value=2.6e-12 Score=118.15 Aligned_cols=178 Identities=11% Similarity=0.095 Sum_probs=102.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI 99 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~ 99 (297)
.|+.......+++.+.+++.+ .++++++ |++|+|++ +.. ++..++.+||+|+++.++|.............++
T Consensus 70 ~Y~p~~g~~~lr~aia~~~~~-~~~~~d~----I~it~Ga~~al~-~l~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~ 143 (402)
T TIGR03542 70 GYGPEQGYPFLREAIAENDYR-GRIDPEE----IFISDGAKCDVF-RLQSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGV 143 (402)
T ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCHHH----EEECCCcHHHHH-HHHHhcCCCCEEEEeCCCCcchHHHHHHcCCccc
Confidence 354445667788444343211 1567764 99999995 444 4566778999999998776655432221111010
Q ss_pred ce-eeeeeEeeecccCCC-CCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEEEehhhhc
Q 022463 100 SA-VSIFFETMPYRLNES-TGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 100 ~~-~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~livD~a~~~ 172 (297)
.. .+.....++++.+++ +...|++. .. ++++|++ +++| +|.+.+ +++|.++|++|++++|+|+++.-
T Consensus 144 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~-~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~ 217 (402)
T TIGR03542 144 LDDDGRYSKITYLPCTKENNFIPDLPE-----EP-KIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSA 217 (402)
T ss_pred cccccccceEEEeecchhhCCCCCccc-----cC-CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhh
Confidence 00 000002333344422 23333321 12 7899998 7888 898877 67888889999999999999763
Q ss_pred ccccccCCCCCC---CC---ccEEEecCCccCCCC--CceEEEEecC
Q 022463 173 GLVAAGVIPSPF---EY---ADVVTTTTHKSLRGP--RGAMIFFRKG 211 (297)
Q Consensus 173 g~~~~~~~~~~~---~~---~D~~~~s~~K~l~gp--~gG~i~~~~~ 211 (297)
-... +..+.++ .. .-+++.|++|.++.| +-|+++.+++
T Consensus 218 ~~~~-~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~ 263 (402)
T TIGR03542 218 FISD-PSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKE 263 (402)
T ss_pred hccC-CCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHH
Confidence 2111 1011111 11 125578999977433 3399998774
No 278
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.47 E-value=3.2e-12 Score=117.37 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=110.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHh--cCCCCeEEEecCCCCCcccccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~ 94 (297)
..|+...+..++++.+.+++.+..+. ++++ +.+++|+|++ +...+++.+ ++|||+|+++++.++....
T Consensus 63 ~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~--i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~----- 135 (396)
T PRK09257 63 KNYLPIEGLAAYRQAVQELLFGADSPALAAGR--VATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRA----- 135 (396)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCCcccccCe--EEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHH-----
Confidence 34666677889997777777554432 4543 1238899984 555455444 5899999999866655533
Q ss_pred cccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcC--CcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEe
Q 022463 95 DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR--PKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~--~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD 167 (297)
.+...|.++..++.. +++++.+|++.+++.++..+ +.++++ +++| +|.+.+. ++|.++|++|++++|+|
T Consensus 136 ---~~~~~g~~~v~v~~~-~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 211 (396)
T PRK09257 136 ---IFEAAGLEVKTYPYY-DAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLD 211 (396)
T ss_pred ---HHHHcCCcEEEEecc-ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 233344444444321 33457899999999887433 334444 5788 8977664 57888899999999999
Q ss_pred hhhhcccccc-cCCCCC---CC--C-ccEEEecCCccCC--CCCceEEEE
Q 022463 168 MAHISGLVAA-GVIPSP---FE--Y-ADVVTTTTHKSLR--GPRGAMIFF 208 (297)
Q Consensus 168 ~a~~~g~~~~-~~~~~~---~~--~-~D~~~~s~~K~l~--gp~gG~i~~ 208 (297)
+++.- .... +....+ +. . -=+++.|++|.++ |-+-|++++
T Consensus 212 e~Y~~-l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 212 IAYQG-FGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred ccccc-cccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEE
Confidence 98642 1110 000000 00 1 1266899999874 333399874
No 279
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.46 E-value=2.4e-12 Score=118.49 Aligned_cols=173 Identities=13% Similarity=0.132 Sum_probs=108.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcC--CCCCCCcceEE--ecCChH-HHHHHH---HHhcCCCCeEEEecCCCCCccccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQ--SLSGSP-SNFQVY---TALLKPHDRIMALDLPHGGHLSHG 91 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~~~~~v~--~~sG~~-~~~~~~---~~~~~~gd~Vl~~~~~~~~~~~~~ 91 (297)
..|+...+..++++.+.+++.+..+ .++++ |. .|+|++ +...++ .++++|||+|+++++.|+....
T Consensus 66 ~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~----v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~-- 139 (404)
T PTZ00376 66 KEYLPIEGLQSFIEAAQKLLFGEASYALAEKR----IATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN-- 139 (404)
T ss_pred CCCCCCCCCHHHHHHHHHHhcCCCccccccCe----EEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--
Confidence 5567777888999777666644432 34543 66 467763 433333 4678999999999866655533
Q ss_pred ccccccccceeeeeeEeeeccc-CCCCCcCCHHHHHHHhhhc--CCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCE
Q 022463 92 YQTDTKKISAVSIFFETMPYRL-NESTGYIDYDQLEKSATLF--RPKLIVA-GASA-YARLYD---YERIRKVCNKQKAI 163 (297)
Q Consensus 92 ~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~d~~~l~~~l~~~--~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~ 163 (297)
.++..|.++..+ +. +++++.+|++.+++.+... +++++++ +++| +|.+.+ +++|.++|++|+++
T Consensus 140 ------~~~~~G~~~~~v--~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ 211 (404)
T PTZ00376 140 ------IFKSAGLNVKEY--RYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLI 211 (404)
T ss_pred ------HHHHcCCceeec--cccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcE
Confidence 233444444444 44 2245789999999998642 3455555 6888 897766 45777889999999
Q ss_pred EEEehhhhcccccccC--CC---CCCC-Cc--cEEEecCCccCC--CCCceEEE
Q 022463 164 MLADMAHISGLVAAGV--IP---SPFE-YA--DVVTTTTHKSLR--GPRGAMIF 207 (297)
Q Consensus 164 livD~a~~~g~~~~~~--~~---~~~~-~~--D~~~~s~~K~l~--gp~gG~i~ 207 (297)
+|+|+++.- ....+. .. ..+. .. =+++.|++|.++ |-+-|+++
T Consensus 212 ii~De~Y~~-~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~ 264 (404)
T PTZ00376 212 PFFDMAYQG-FASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALH 264 (404)
T ss_pred EEEehhhcC-ccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEE
Confidence 999998632 111100 00 0000 11 267789999874 34449884
No 280
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.46 E-value=4.5e-12 Score=117.15 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=110.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHhcC-----CCCeEEE-ecCCCCCcccc
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLK-----PHDRIMA-LDLPHGGHLSH 90 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~~~-----~gd~Vl~-~~~~~~~~~~~ 90 (297)
..|+......++++.+.+++.+..|. +++ +|++|+|++ +...++.+++. +||.|++ ..++++.....
T Consensus 68 ~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~----~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~ 143 (416)
T PRK09440 68 GNYDGPQGKDELIEALAALLNERYGWNISPQ----NIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADA 143 (416)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCCChh----hEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHH
Confidence 34666667788887777888776664 555 499999995 66557777774 6899999 47666655331
Q ss_pred cccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc---HHHHHHHHHhcCCEEE
Q 022463 91 GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD---YERIRKVCNKQKAIML 165 (297)
Q Consensus 91 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~---~~~i~~la~~~g~~li 165 (297)
.... + .+.+.....++++.+...+.+|++.++ +.+ +++++++ +++| +|.+.+ +++|.++|+++++++|
T Consensus 144 ~~~~---~-~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI 216 (416)
T PRK09440 144 GLEE---D-LFVSYRPNIELLPEGQFKYHVDFEHLH--IDE-DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLL 216 (416)
T ss_pred hhcc---C-ceeecccccccccccccccCCCHHHcc--cCC-CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEE
Confidence 1110 0 011111222322221113568999887 344 7788888 7888 898877 5578888999999999
Q ss_pred Eehhhhcccccc---cCCCCCCCCccEEEecCCcc-CCCCCceEEEEecC
Q 022463 166 ADMAHISGLVAA---GVIPSPFEYADVVTTTTHKS-LRGPRGAMIFFRKG 211 (297)
Q Consensus 166 vD~a~~~g~~~~---~~~~~~~~~~D~~~~s~~K~-l~gp~gG~i~~~~~ 211 (297)
+|+++....... +..+. ...-=+++.|++|+ +.|.+-|+++.+++
T Consensus 217 ~De~Y~~~~~~~~~~~~~~~-~~~~vI~~~SfSK~~~pGlRiG~~i~~~~ 265 (416)
T PRK09440 217 IDNAYGPPFPGIIFSEATPL-WNPNIILCMSLSKLGLPGVRCGIVIADEE 265 (416)
T ss_pred EeCCccccCCCcchhhcCcc-ccCCeEEEecccccCCCcceEEEEeCCHH
Confidence 999975311110 11000 00112667899995 23333399988763
No 281
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.46 E-value=6.4e-12 Score=113.90 Aligned_cols=217 Identities=11% Similarity=0.005 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeE
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 107 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 107 (297)
.+++ +.+++++++++++ |++++|++ +...++.++ .+||.|+++.+.+..... .+...|..+.
T Consensus 60 ~~Lr----~aia~~~~v~~~~----I~it~G~~~~i~~~~~~l-~~g~~vlv~~P~y~~~~~--------~~~~~g~~~~ 122 (360)
T PRK07392 60 RELR----LALAQHHQLPPEW----ILPGNGAAELLTWAGREL-AQLRAVYLITPAFGDYRR--------ALRAFGATVK 122 (360)
T ss_pred HHHH----HHHHHHhCcChhh----EEECCCHHHHHHHHHHHh-CCCCeEEEECCCcHHHHH--------HHHHcCCeEE
Confidence 4566 7777888998865 99999995 554455654 578999998865555432 2333444444
Q ss_pred eeecccCCCCC----cCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 108 TMPYRLNESTG----YIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 108 ~v~~~~~~~~~----~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
.+ +.+.++. ..|++++++.. . +++++++ +++| +|.+.+.++|.++++++++ +|+|+++.--... +...
T Consensus 123 ~v--~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~-~~~~ 196 (360)
T PRK07392 123 EL--PLPLDQPSPGLTLRLQTLPPQL-T-PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPP-DAEQ 196 (360)
T ss_pred EE--ecccccCCcccccCHHHHHHhc-c-CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccC-cccc
Confidence 44 4442222 24666666543 2 6788888 7888 8999999999999999985 6679986422111 1000
Q ss_pred CCC---CCc--cEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHH
Q 022463 182 SPF---EYA--DVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 254 (297)
Q Consensus 182 ~~~---~~~--D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al 254 (297)
... ... =+++.|++|.++ |-+-|+++.+++ ..+.+..... ..+.+.....++..++
T Consensus 197 s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~--------------~~~~~~~~~~---~~~~s~~~q~~~~~~l 259 (360)
T PRK07392 197 SLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPD--------------RLQRWQQWRD---PWPVNGLAAAAAIAAL 259 (360)
T ss_pred chHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHH--------------HHHHHHhhCC---CCCCCHHHHHHHHHHh
Confidence 000 111 267789999764 444499998763 3444433221 1234445555554544
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+ +..-.++.+++.++..+++.+.|++++.+.
T Consensus 260 ~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 290 (360)
T PRK07392 260 A---DRDFQQQTWAWLPPAREALFQGLASLPGLT 290 (360)
T ss_pred c---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 3 221233345556667777888887766543
No 282
>PLN02672 methionine S-methyltransferase
Probab=99.45 E-value=3.5e-12 Score=127.09 Aligned_cols=171 Identities=11% Similarity=0.038 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
++++.+++++++.+|.+.+.. ..|++++|++ +...++.++++|||.|+++.+.|+.... .++..|..+..
T Consensus 734 dlr~aLa~~la~~~Gv~~d~~-e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~--------~a~~~Ga~vv~ 804 (1082)
T PLN02672 734 DPRPSILQFIKSNYGFPTDSC-TEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVS--------AAKFLKANFRR 804 (1082)
T ss_pred HHHHHHHHHHHHHhCcCCCCC-CEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCCEEEE
Confidence 446667799999988865310 1499999995 4445778889999999999855544433 34445555555
Q ss_pred eecccCC-CCCcCCHHHHHHHhhhcCCcEEEE-cCC-C-CCCccc---HHHHHHHHHhcCCEEEEehhhhcccccccCC-
Q 022463 109 MPYRLNE-STGYIDYDQLEKSATLFRPKLIVA-GAS-A-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVI- 180 (297)
Q Consensus 109 v~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~-~~~-~-~G~~~~---~~~i~~la~~~g~~livD~a~~~g~~~~~~~- 180 (297)
++ .++ +++.+|++.+++++++.+.++|++ +++ | +|.+.+ +++|.++|++||++||+|++++.-.......
T Consensus 805 Vp--l~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s 882 (1082)
T PLN02672 805 IP--TKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWG 882 (1082)
T ss_pred Ee--cccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCc
Confidence 54 442 467899999999997523445655 776 7 897765 4577788999999999999975211111000
Q ss_pred CCCC-------CC-----ccEEEecCCccCCCC--CceEEEEecC
Q 022463 181 PSPF-------EY-----ADVVTTTTHKSLRGP--RGAMIFFRKG 211 (297)
Q Consensus 181 ~~~~-------~~-----~D~~~~s~~K~l~gp--~gG~i~~~~~ 211 (297)
.+++ .. .=+++.|++|.++.| +-|+++++++
T Consensus 883 ~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~ 927 (1082)
T PLN02672 883 GWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDS 927 (1082)
T ss_pred ccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCH
Confidence 0000 01 114567999865443 3399998663
No 283
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.45 E-value=8.5e-12 Score=114.69 Aligned_cols=216 Identities=13% Similarity=0.084 Sum_probs=124.9
Q ss_pred HHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc----------CCCCeEEEecCCCCCc-cccccccccccccee
Q 022463 34 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL----------KPHDRIMALDLPHGGH-LSHGYQTDTKKISAV 102 (297)
Q Consensus 34 ~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~----------~~gd~Vl~~~~~~~~~-~~~~~~~~~~~~~~~ 102 (297)
..++.++++++.+. .++++||+.+|..+++... ..++.|++.+..+++. ...............
T Consensus 77 ~~~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~ 151 (400)
T PTZ00125 77 LAEKYITDLFGYDK-----VLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNN 151 (400)
T ss_pred HHHHHHHhCCCCCE-----EEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhcc
Confidence 34477778877643 4777899999988777553 1346777776554443 221111100000000
Q ss_pred --eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCccc----HHHHHHHHHhcCCEEEEehhhh-cc
Q 022463 103 --SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYD----YERIRKVCNKQKAIMLADMAHI-SG 173 (297)
Q Consensus 103 --g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~----~~~i~~la~~~g~~livD~a~~-~g 173 (297)
.......+++ ..|++.+++.++..++++|++ ...| +|.+.| +++|.++|++||+++|+|++|+ .|
T Consensus 152 ~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g 225 (400)
T PTZ00125 152 FGPFVPGFELVD------YNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG 225 (400)
T ss_pred CCCCCCCceEeC------CCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 0000001111 238999999996337888888 3333 787777 9999999999999999999985 22
Q ss_pred ccc----ccCCCCCCCCccEEEecCCccCCCCC-c-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHH
Q 022463 174 LVA----AGVIPSPFEYADVVTTTTHKSLRGPR-G-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTI 247 (297)
Q Consensus 174 ~~~----~~~~~~~~~~~D~~~~s~~K~l~gp~-g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 247 (297)
... ...... ..|++++| |+++++. . |+++++++ +.+.+......... +.+....
T Consensus 226 ~~G~~~~~~~~~~---~pd~~~~s--K~l~~g~~~ig~v~~~~~--------------~~~~~~~~~~~~t~-~~~~~~~ 285 (400)
T PTZ00125 226 RTGKLLAHDHEGV---KPDIVLLG--KALSGGLYPISAVLANDD--------------VMLVIKPGEHGSTY-GGNPLAC 285 (400)
T ss_pred ccchhhHHHhcCC---CCCEEEEc--ccccCCCcCcEEEEEcHH--------------HHhhccCCCCCCCC-CcCHHHH
Confidence 111 111111 46888765 9997653 3 88888884 34433322111111 2344566
Q ss_pred HHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 248 TGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 248 ~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++..++|+.+.+. ++ .++.+.+.+++.+.|+++
T Consensus 286 ~aa~~~l~~i~~~-~~---~~~~~~~~~~l~~~l~~l 318 (400)
T PTZ00125 286 AVAVEALEVLKEE-KL---AENAQRLGEVFRDGLKEL 318 (400)
T ss_pred HHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHHHHH
Confidence 6767788888655 43 344445556666666543
No 284
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.42 E-value=2e-11 Score=111.35 Aligned_cols=216 Identities=13% Similarity=0.090 Sum_probs=121.2
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh---cC----CCCeEEEecCCCCCcccccccccccccceeeeeeE
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---LK----PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 107 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~---~~----~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 107 (297)
..+++++++|.+. .+++++|++++..+++.+ .. ++|+|+++...+++.............. . ..
T Consensus 74 l~~~la~~~g~~~-----~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~-~---~~ 144 (379)
T TIGR00707 74 LAEKLVEHSGADR-----VFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKY-Q---KG 144 (379)
T ss_pred HHHHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhh-h---cc
Confidence 3388999998763 255566777877666644 22 4799999886654432111111000000 0 00
Q ss_pred eeecccCCCCC--cCCHHHHHHHhhhcCCcEEEEcCCC--CCCc-c---cHHHHHHHHHhcCCEEEEehhhhcccccccC
Q 022463 108 TMPYRLNESTG--YIDYDQLEKSATLFRPKLIVAGASA--YARL-Y---DYERIRKVCNKQKAIMLADMAHISGLVAAGV 179 (297)
Q Consensus 108 ~v~~~~~~~~~--~~d~~~l~~~l~~~~~~~v~~~~~~--~G~~-~---~~~~i~~la~~~g~~livD~a~~~g~~~~~~ 179 (297)
..++..+ ... ..|++.+++.+++ ++++|++++.+ .|.. . ++++|.++|+++|+++|+|++++ +....+.
T Consensus 145 ~~~~~~~-~~~~~~~d~~~l~~~~~~-~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~ 221 (379)
T TIGR00707 145 FEPLVPG-FSYAPYNDIESLKKAIDD-ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGK 221 (379)
T ss_pred CCCCCCC-ceeeCCCCHHHHHHHhhh-CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccch
Confidence 0111100 001 1289999999987 88999884333 3432 2 37899999999999999999986 2211110
Q ss_pred -CC--CCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHH
Q 022463 180 -IP--SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 255 (297)
Q Consensus 180 -~~--~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~ 255 (297)
.. ......|++++ +|+++++.. |+++.++ ++.+.+...... ...+.+.+..+++.++|+
T Consensus 222 ~~~~~~~~~~~d~~t~--sK~~~~G~riG~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~aa~aaL~ 284 (379)
T TIGR00707 222 FFAYEHYGIEPDIITL--AKGLGGGVPIGATLAKE--------------EVAEAFTPGDHG-STFGGNPLACAAALAVLE 284 (379)
T ss_pred hhhHHhcCCCCCEEEE--cccccCCcccEEEEEcH--------------HHHhhhcCCCCC-CCCCCCHHHHHHHHHHHH
Confidence 00 00014576654 699874333 8888877 344444332111 122345677788888888
Q ss_pred HHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 256 QVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 256 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
.+... ...++.+++.++++++|++
T Consensus 285 ~~~~~----~~~~~~~~~~~~~~~~l~~ 308 (379)
T TIGR00707 285 VIEKE----RLLENVKEKGDYFKERLEE 308 (379)
T ss_pred HHHhh----hHHHHHHHHHHHHHHHHHH
Confidence 77533 2444555555555555544
No 285
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.42 E-value=2.6e-11 Score=108.63 Aligned_cols=198 Identities=11% Similarity=0.049 Sum_probs=118.3
Q ss_pred HHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccC
Q 022463 36 QKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 114 (297)
Q Consensus 36 ~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 114 (297)
|+.++++++.+ + |++|+|++ +...+ ..+.+||+|+++.++++.... .++..|.++..+ +.
T Consensus 55 r~~ia~~~~~~--~----I~it~Gs~~al~~~--~~~~~gd~v~v~~P~y~~~~~--------~~~~~g~~~~~v--~~- 115 (330)
T PRK05664 55 EAAARAYYGAP--Q----LLPVAGSQAAIQAL--PRLRAPGRVGVLSPCYAEHAH--------AWRRAGHQVREL--DE- 115 (330)
T ss_pred HHHHHHHhCCC--C----EEECcCHHHHHHHH--HHccCCCEEEEcCCChHHHHH--------HHHHcCCeEEEe--ch-
Confidence 38888888864 2 99999995 44323 246899999998855444432 233334333333 22
Q ss_pred CCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHH---HHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCcc-
Q 022463 115 ESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYE---RIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAD- 188 (297)
Q Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~---~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D- 188 (297)
+++++.++ +++++++ +|+| +|.+.+.+ +|.++|+++++++|+|+++........+.. +..-|
T Consensus 116 --------~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~--~~~~~~ 183 (330)
T PRK05664 116 --------AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAA--CAHRPG 183 (330)
T ss_pred --------hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccc--cccCCC
Confidence 34555553 6777777 7888 89888765 555556889999999998742211011111 11112
Q ss_pred -EEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhh
Q 022463 189 -VVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSH 265 (297)
Q Consensus 189 -~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~ 265 (297)
+++.|++|.++ |-+-|+++.++ ++.+.+.....+. +.+.+...++.++|+... -.++
T Consensus 184 vi~~~SfSK~~gl~GlRiG~~v~~~--------------~l~~~~~~~~~~~---~~~~~~~~~~~~~L~~~~---~~~~ 243 (330)
T PRK05664 184 LIVLRSFGKFFGLAGARLGFVLAEP--------------ALLRALAELLGPW---TVSGPTRWLAQAALADTP---WQRR 243 (330)
T ss_pred EEEEeeccccccCCCcceEEEEeCH--------------HHHHHHHHhcCCC---CCCHHHHHHHHHHHhChH---HHHH
Confidence 67899999874 33339999877 3445444432221 223344444445554221 2345
Q ss_pred HHHHhhhhHHHHHhhccCC
Q 022463 266 IHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 266 ~~~~~~~l~~~l~~~l~~~ 284 (297)
.+++.++..+++.+.|++.
T Consensus 244 ~~~~~~~~r~~l~~~L~~~ 262 (330)
T PRK05664 244 QRERLLAASQRLAALLRRH 262 (330)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 6666667777888888776
No 286
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=99.42 E-value=7.5e-13 Score=116.57 Aligned_cols=252 Identities=17% Similarity=0.102 Sum_probs=153.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc---CCC----------CeEEE-ecCCCCCc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL---KPH----------DRIMA-LDLPHGGH 87 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~---~~g----------d~Vl~-~~~~~~~~ 87 (297)
|.-.+-...+|.++..++.++.|.+... -.|+-..|+.+|+.++.... -|+ +.|+. ++.+|.|.
T Consensus 133 YEiAPvF~lmE~~vl~km~~ivGw~~~~--DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi 210 (510)
T KOG0629|consen 133 YEIAPVFVLMEEEVLAKMREIVGWEEGG--DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSI 210 (510)
T ss_pred EEecceEEeehHHHHHHHHHHhCCCCCC--CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhH
Confidence 3333445567888889999999998742 14655566667765544321 121 33444 34456666
Q ss_pred ccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcC-----CcEEEEc--CCCCCCcccHHHHHHHHHhc
Q 022463 88 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR-----PKLIVAG--ASAYARLYDYERIRKVCNKQ 160 (297)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~-----~~~v~~~--~~~~G~~~~~~~i~~la~~~ 160 (297)
......++.. .-.+ +.++.+ +.+.+++++||+.|.+.+ |-+|-.+ .+.+|...|++.|+++|++|
T Consensus 211 ~kaAa~lg~g-----td~c--~~v~t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~ 282 (510)
T KOG0629|consen 211 KKAAAFLGLG-----TDHC--IKVKTD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKH 282 (510)
T ss_pred HHHHHHhccC-----Ccee--EEeccc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhc
Confidence 5543322211 0113 333566 679999999999987533 3344443 44479999999999999999
Q ss_pred CCEEEEehhhhcccccccCCCCCCC---CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccC
Q 022463 161 KAIMLADMAHISGLVAAGVIPSPFE---YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP 236 (297)
Q Consensus 161 g~~livD~a~~~g~~~~~~~~~~~~---~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (297)
+++++||+|+..|.+-...+..-+. .+|.+++++||+++.|.. +.++++.+-.+..+..... .+.-.-+..+..
T Consensus 283 ~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A--~YLFq~dK~Ydv 360 (510)
T KOG0629|consen 283 KLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSA--IYLFQQDKFYDV 360 (510)
T ss_pred CEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccch--hhhhccCceeec
Confidence 9999999999887765543333322 589999999999988888 8888777521111111110 000000111111
Q ss_pred CC--------CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 237 GL--------QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 237 ~~--------~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+. .|-. ..+.-++.-++.=... |+++-.++..++++||.+.|++.+..+
T Consensus 361 S~DTgdK~iQCGRh--~D~FKlWlmwkaKG~~-Gfe~~v~k~~~lA~yl~~~lrer~~~~ 417 (510)
T KOG0629|consen 361 SYDTGDKAIQCGRH--VDVFKLWLMWKAKGTQ-GFEAQVDKCLRLAEYLYDRLREREGFE 417 (510)
T ss_pred ccccccchhhcCcc--ccHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHhcccce
Confidence 11 2211 1112233333333444 899999999999999999999988643
No 287
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.41 E-value=2e-11 Score=112.25 Aligned_cols=227 Identities=14% Similarity=0.111 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc----------CCCCeEEEecCCCCC-cccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL----------KPHDRIMALDLPHGG-HLSHGYQT 94 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~----------~~gd~Vl~~~~~~~~-~~~~~~~~ 94 (297)
+...+++ ++++++++.+. .++++||+.+|..++.... ...+.|+.....|++ .+......
T Consensus 79 ~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~ 149 (401)
T TIGR01885 79 DVFGEFA----EYVTKLFGYDK-----VLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMS 149 (401)
T ss_pred HHHHHHH----HHHHhhcCCCE-----EEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCc
Confidence 3344555 78888887543 4777899999988777641 224567777766544 33222111
Q ss_pred cc------cccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEE-cCC-CCCCccc----HHHHHHHHHhc
Q 022463 95 DT------KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA-GAS-AYARLYD----YERIRKVCNKQ 160 (297)
Q Consensus 95 ~~------~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~-~~~-~~G~~~~----~~~i~~la~~~ 160 (297)
.. .+....+ + +.++. .|++.+++.+++. +..+|++ ... ..|...| +++|.++|++|
T Consensus 150 ~~~~~~~~~~~~~~~--~--~~~~~------~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~ 219 (401)
T TIGR01885 150 TDPDSRTNFGPYVPG--F--KKIPY------NNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH 219 (401)
T ss_pred CCcccccccCCCCCC--c--eEeCC------CCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 00 0000000 1 11122 2688999988642 3456666 333 3676666 89999999999
Q ss_pred CCEEEEehhhhcccccccCC---CCCCCCccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhccc
Q 022463 161 KAIMLADMAHISGLVAAGVI---PSPFEYADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVF 235 (297)
Q Consensus 161 g~~livD~a~~~g~~~~~~~---~~~~~~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 235 (297)
|+++|+|++|. |....+.. ...-...|++++| |.+++.. -|+++.++ ++.+.+.....
T Consensus 220 ~~lli~DEv~~-g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~~--------------~i~~~~~~~~~ 282 (401)
T TIGR01885 220 NVLLIADEIQT-GLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSAVLADD--------------DVMLTIKPGEH 282 (401)
T ss_pred CCEEEEechhh-CCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEEEEEcH--------------HHHhhccCCCC
Confidence 99999999984 43211100 0000157888766 9987632 26777776 33443332112
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC--CcccccCC
Q 022463 236 PGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE--NIEEDKGR 293 (297)
Q Consensus 236 ~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~g~ 293 (297)
... .+.+....++..++|+.+.+. + +.++.+.+.+++.+.|++++ -+.+++|.
T Consensus 283 ~~t-~~~~p~~~~aa~a~L~~i~~~-~---l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~ 337 (401)
T TIGR01885 283 GST-YGGNPLACAVAVAALEVLEEE-K---LAENAEKLGEIFRDQLKKLPKPIITEVRGR 337 (401)
T ss_pred CCC-CCCCHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHhccCCceeEEeec
Confidence 111 223456677778889888654 3 55677778899999998874 23344444
No 288
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.41 E-value=1.8e-11 Score=112.38 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--------CCCCeEEEecCCC-CCcccccccccccccc--ee--e
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--------KPHDRIMALDLPH-GGHLSHGYQTDTKKIS--AV--S 103 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--------~~gd~Vl~~~~~~-~~~~~~~~~~~~~~~~--~~--g 103 (297)
++|+++++.+. ..+++||+.+|..+++... ...+.|+..+..+ +++......-...... +. .
T Consensus 84 ~~L~~~~~~~~-----~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~ 158 (397)
T TIGR03246 84 KKLVDATFADK-----VFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLP 158 (397)
T ss_pred HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCC
Confidence 77888876542 4777899998887777541 1235566665554 4332211100000000 00 0
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCC--CCCc----ccHHHHHHHHHhcCCEEEEehhhhcccccc
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHISGLVAA 177 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~--~G~~----~~~~~i~~la~~~g~~livD~a~~~g~~~~ 177 (297)
..+ ..++ ..|++.+++.+.+ ++++|++.+.+ .|.. .++++|.++|++||+++|+|++| .|.-..
T Consensus 159 ~~~--~~~~------~~d~~~l~~~l~~-~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~ 228 (397)
T TIGR03246 159 GGI--KHAP------YNDLAAAKALISD-KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRT 228 (397)
T ss_pred Cce--EEeC------CCCHHHHHHHhcc-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCcc
Confidence 001 1112 1378999999976 78888884333 3433 34889999999999999999998 444211
Q ss_pred cCC-C-CCCC-CccEEEecCCccCCC-CCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHH
Q 022463 178 GVI-P-SPFE-YADVVTTTTHKSLRG-PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVA 253 (297)
Q Consensus 178 ~~~-~-~~~~-~~D~~~~s~~K~l~g-p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a 253 (297)
+.. . ..+. .+|++++ .|.+++ -+-|+++.++ ++.+.+....... ..+.+...+++..++
T Consensus 229 G~~~a~~~~gv~pDi~t~--~K~lggG~pigav~~~~--------------~i~~~~~~~~~~~-t~~~~p~~~aaa~a~ 291 (397)
T TIGR03246 229 GELYAYMHYGVTPDILTS--AKALGGGFPIGAMLTTT--------------EIAAHLKVGTHGT-TYGGNPLACAVAGKV 291 (397)
T ss_pred ccchhhhhcCCCCCEEEe--ehhhhCCcceeEEEEcH--------------HHHHhccCCCcCC-CCCCCHHHHHHHHHH
Confidence 110 0 0011 4687765 599854 2227777777 3444443221111 112345667777788
Q ss_pred HHHHhhhcChhhHHHHhhhhHHHHHhhccCC----CCcccccCCC
Q 022463 254 LKQVCTLITFSHIHVFSLHVYPAFVSNQNNS----ENIEEDKGRP 294 (297)
Q Consensus 254 l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~----~~~~~~~g~~ 294 (297)
|+.+.+. .+.++.+++.+++.++|+++ +.+.+++|..
T Consensus 292 l~~~~~~----~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G 332 (397)
T TIGR03246 292 LDLVNTP----ELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKG 332 (397)
T ss_pred HHHHhhc----cHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCc
Confidence 8877543 34555666666666666554 3355566543
No 289
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.39 E-value=7.3e-11 Score=107.65 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCC-Ccccccccccccccceeeee-
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHG-GHLSHGYQTDTKKISAVSIF- 105 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~-~~~~~~~~~~~~~~~~~g~~- 105 (297)
+++.+..+++++..+.+ . .++++||+.++.++++.. ...++.|++.+..++ +.............. .+..
T Consensus 71 ~~~~~la~~l~~~~~~~--~---~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~-~~~~~ 144 (377)
T PRK02936 71 SLQEEVASLLAENSAGD--L---VFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIK-EGFGP 144 (377)
T ss_pred HHHHHHHHHHHhcCCCC--E---EEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCcccc-ccCCC
Confidence 34433335555554432 2 366688888888777743 233456777765544 333222111000000 0000
Q ss_pred --eEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCc----ccHHHHHHHHHhcCCEEEEehhhhcccccc
Q 022463 106 --FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARL----YDYERIRKVCNKQKAIMLADMAHISGLVAA 177 (297)
Q Consensus 106 --~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~----~~~~~i~~la~~~g~~livD~a~~~g~~~~ 177 (297)
.....++ .-|++.+++.+.+ ++++|++ ...+ .|.. .++++|.++|++||+++|+|++|. |....
T Consensus 145 ~~~~~~~~~------~~d~~~l~~~~~~-~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~ 216 (377)
T PRK02936 145 LLPGFTHVP------FNDIKALKEVMNE-EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQT-GIGRT 216 (377)
T ss_pred CCCCceEeC------CCCHHHHHHhccC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcC
Confidence 0001111 1278999999976 7888888 4333 3433 338899999999999999999984 33221
Q ss_pred cCCCCC---CC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHH
Q 022463 178 GVIPSP---FE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAV 252 (297)
Q Consensus 178 ~~~~~~---~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~ 252 (297)
+. ..+ +. ..|+++ ++|.+++. +.|+++.++ ++.+.+....... ..+.+....+++.+
T Consensus 217 g~-~~~~~~~~~~~di~t--~sK~l~~G~~ig~v~~~~--------------~~~~~~~~~~~~~-t~~~~~~~~aaa~a 278 (377)
T PRK02936 217 GT-LFAYEQFGLDPDIVT--VAKGLGNGIPVGAMIGKK--------------ELGTAFGPGSHGS-TFGGNPLAMAAAKE 278 (377)
T ss_pred ch-hhHHHhhCCCCcEEE--EcccccCCCccEEEEEcH--------------HHHhhccCCCCCC-CCCCCHHHHHHHHH
Confidence 10 000 01 357665 56998642 358888777 3444443221111 22346677888888
Q ss_pred HHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccC
Q 022463 253 ALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKG 292 (297)
Q Consensus 253 al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g 292 (297)
+|+.+.....+++++++...+.+.|.+.+.+++.+.+++|
T Consensus 279 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 318 (377)
T PRK02936 279 VLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG 318 (377)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee
Confidence 8988754324555666666666655554444555554443
No 290
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.38 E-value=3.4e-11 Score=110.36 Aligned_cols=212 Identities=13% Similarity=0.085 Sum_probs=117.2
Q ss_pred eEEecCChHHHHHHHHHhc------CCC-CeEEEecCC-CCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHH
Q 022463 53 NVQSLSGSPSNFQVYTALL------KPH-DRIMALDLP-HGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 124 (297)
Q Consensus 53 ~v~~~sG~~~~~~~~~~~~------~~g-d~Vl~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~ 124 (297)
.++++||+.++..+++... ++| ..|++.+.. |++................ +.+....+. .....|++.
T Consensus 96 v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~---~~~~~~~~~-~~~~~d~~~ 171 (395)
T PRK03715 96 VFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTI---FAPQVPGFP-KAELNDIAS 171 (395)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccC---CCCCCCCce-eeCCchHHH
Confidence 3666888888887776653 123 456766655 4443322211110000000 000000000 011247899
Q ss_pred HHHHhhhcCCcEEEEcC--CCCCCccc----HHHHHHHHHhcCCEEEEehhhhcccccccC---CCCCCC-CccEEEecC
Q 022463 125 LEKSATLFRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV---IPSPFE-YADVVTTTT 194 (297)
Q Consensus 125 l~~~l~~~~~~~v~~~~--~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~~---~~~~~~-~~D~~~~s~ 194 (297)
+++.+.+ ++.+|++.+ ++-|...| +++|.++|++||+++|+|++|+ |.-..+. ... +. .+|+++++
T Consensus 172 l~~~l~~-~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~-~gv~PDi~t~g- 247 (395)
T PRK03715 172 VEKLITD-KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYEL-SGIEPDIMTLG- 247 (395)
T ss_pred HHHHcCC-CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhh-cCCCCceeeeh-
Confidence 9998876 788888832 22466666 8999999999999999999987 4311111 000 01 46988776
Q ss_pred CccCCCCC-ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhh
Q 022463 195 HKSLRGPR-GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHV 273 (297)
Q Consensus 195 ~K~l~gp~-gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l 273 (297)
|.|++.. .|++++++++ .. +......+ +.+.+...+++..++|+.+.++ .+.++.+++
T Consensus 248 -K~lg~G~p~~av~~~~~i--------------~~-~~~~~~~~-T~~g~pl~~aaala~L~~l~~~----~l~~~~~~~ 306 (395)
T PRK03715 248 -KGIGGGVPLAALLAKAEV--------------AV-FEAGDQGG-TYNGNPLMTAVGVAVISQLLAP----GFLEGVRAR 306 (395)
T ss_pred -hhhhCCcceEEEEEcccc--------------cc-ccCCCcCC-CCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHH
Confidence 9997732 3666777742 11 11111111 1123456777888889888754 345555566
Q ss_pred HHHHHhhccCC---CCcccccCC
Q 022463 274 YPAFVSNQNNS---ENIEEDKGR 293 (297)
Q Consensus 274 ~~~l~~~l~~~---~~~~~~~g~ 293 (297)
.++|.++|+++ ..+.+++|.
T Consensus 307 g~~l~~~L~~l~~~~~i~~vrG~ 329 (395)
T PRK03715 307 GEYLKEKLLELSEERGLEGERGE 329 (395)
T ss_pred HHHHHHHHHHHhhcCCcCeEEcc
Confidence 66666665543 126666665
No 291
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.38 E-value=4.8e-11 Score=109.48 Aligned_cols=231 Identities=12% Similarity=0.095 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEec-CChHHHHHHHHHhcCCC-------CeEEEecCCCCCcccccccccccccce
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTALLKPH-------DRIMALDLPHGGHLSHGYQTDTKKISA 101 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~~-sG~~~~~~~~~~~~~~g-------d~Vl~~~~~~~~~~~~~~~~~~~~~~~ 101 (297)
+.+++..++++++.+.+. ++++ +|++++..+++.+..++ +.|++....+++........
T Consensus 81 ~~~~~la~~l~~~~~~~~------v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~------- 147 (396)
T PRK02627 81 EPQEELAEKLVELSGMDK------VFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSA------- 147 (396)
T ss_pred HHHHHHHHHHHhhcCCCE------EEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHh-------
Confidence 334444477888776632 5555 55578877777554332 66887776544332111100
Q ss_pred eeeee-EeeecccCCCC---CcCCHHHHHHHhhhcCCcEEEEc-CCC-CC-Ccc---cHHHHHHHHHhcCCEEEEehhhh
Q 022463 102 VSIFF-ETMPYRLNEST---GYIDYDQLEKSATLFRPKLIVAG-ASA-YA-RLY---DYERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 102 ~g~~~-~~v~~~~~~~~---~~~d~~~l~~~l~~~~~~~v~~~-~~~-~G-~~~---~~~~i~~la~~~g~~livD~a~~ 171 (297)
.+... .....+..++- ...|++++++.+.+ ++++|++. ..+ .| ... .+++|.++|++||+++|+|++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~ 226 (396)
T PRK02627 148 TGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITD-KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQT 226 (396)
T ss_pred cCCccccccCCCCCCCceEeCCCCHHHHHHhcCC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc
Confidence 00000 00000111000 02289999999976 88999983 333 45 233 37899999999999999999987
Q ss_pred cccccccC-CCC-CCC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHH
Q 022463 172 SGLVAAGV-IPS-PFE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTI 247 (297)
Q Consensus 172 ~g~~~~~~-~~~-~~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 247 (297)
|....+. ... .+. ..|++++ +|.+++. +-|+++.+++ +.+.+....... ..+.+....
T Consensus 227 -g~g~~g~~~~~~~~~~~pdi~t~--sK~~~~G~rig~~~~~~~--------------~~~~~~~~~~~~-t~~~~~~~~ 288 (396)
T PRK02627 227 -GMGRTGKLFAYQHYGIEPDIMTL--AKGLGGGVPIGAVLAKEK--------------VADVFTPGDHGS-TFGGNPLAC 288 (396)
T ss_pred -CCCccCceeeehhcCCCCCEEEE--cchhhCCcccEEEEEcHH--------------HHhccCCCCCCC-CCCCCHHHH
Confidence 2211110 000 011 3576665 5988642 2388888773 344333221111 223455677
Q ss_pred HHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccC
Q 022463 248 TGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKG 292 (297)
Q Consensus 248 ~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g 292 (297)
+++.++++.+....-.+++++....+.+.+.+.+.+.+.+...+|
T Consensus 289 ~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 333 (396)
T PRK02627 289 AAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRG 333 (396)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCeeeecc
Confidence 777788877654412344444444444444444444444444444
No 292
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.37 E-value=3.6e-11 Score=111.33 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=130.4
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccccccc---cc------eeee-
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKK---IS------AVSI- 104 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~---~~------~~g~- 104 (297)
+++++.+... +. .++.+||+.++..+++.. ...+++|++....+++...........+ .. +...
T Consensus 95 e~l~~~~~~~-~~---v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (423)
T TIGR00713 95 KEIISRVPSV-EM---VRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDF 170 (423)
T ss_pred HHHHHhCCcc-cE---EEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCccc
Confidence 6777776543 22 244566677887766643 2356889988877666432111000000 00 0000
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE--cCCCCCCccc----HHHHHHHHHhcCCEEEEehhhhccccc
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA--GASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVA 176 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~--~~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~ 176 (297)
....+.++ ..|++.+++.+++ .++++|++ .++|.|.+.| +++|.++|++||+++|+|++|. |...
T Consensus 171 ~~~~~~~~------~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~r~ 243 (423)
T TIGR00713 171 AKLTLVLP------YNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT-GFRV 243 (423)
T ss_pred ccceEEeC------CCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-cccc
Confidence 00011111 1278999999873 25678877 3666786655 6899999999999999999984 3321
Q ss_pred ccCCCCC-CC-CccEEEecCCccCCC-CCceEEEEecCchhhccCCccchhhHHHHhhhcc--cCCCCCCCchHHHHHHH
Q 022463 177 AGVIPSP-FE-YADVVTTTTHKSLRG-PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV--FPGLQGGPHNHTITGLA 251 (297)
Q Consensus 177 ~~~~~~~-~~-~~D~~~~s~~K~l~g-p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~al~ 251 (297)
....... +. ..|+++ ++|.+++ -+.|++++++ ++.+.+.... ....+.+.+...+++..
T Consensus 244 g~~~~~~~~~~~pDi~t--~sK~l~~G~pig~v~~~~--------------~i~~~~~~~~~~~~~~T~~~~~~~~aaa~ 307 (423)
T TIGR00713 244 ALGGAQEYFGVEPDLTT--LGKIIGGGLPVGAFGGRR--------------EIMERLAPEGPVYQAGTLSGNPLAMAAGL 307 (423)
T ss_pred CcchhHHHhCCCcchhh--hhhhhcCCCceeeeeEHH--------------HHHHhhCcCCCeeeccCCCCCHHHHHHHH
Confidence 0000000 01 357654 5698864 2348888887 3444443211 11112235667777888
Q ss_pred HHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccC
Q 022463 252 VALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKG 292 (297)
Q Consensus 252 ~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g 292 (297)
++|+.+.+..-++++++....+.+.+.+.+++.+.+.+++|
T Consensus 308 a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~ 348 (423)
T TIGR00713 308 ATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNR 348 (423)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 88988876523566666666777777766666665544443
No 293
>PLN02397 aspartate transaminase
Probab=99.37 E-value=1.2e-11 Score=114.56 Aligned_cols=177 Identities=18% Similarity=0.097 Sum_probs=103.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCC-CCCCc--ceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLD-PEKWG--VNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~--~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
.|+...+..++++.+.+++.+..... .++.- ..+..++|+......+..++.|||+|+++++.|+.+...
T Consensus 86 ~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~------- 158 (423)
T PLN02397 86 EYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNI------- 158 (423)
T ss_pred CCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHH-------
Confidence 57777788899976666664332211 11100 012223333333334455567999999998666555432
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEehhh
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~a~ 170 (297)
+...|.++..++.. +++++.+|++.+++.+.+ .+++++++ +++| +|.+.+. ++|.++|++||+++|+|+++
T Consensus 159 -~~~~g~~~~~v~l~-~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y 236 (423)
T PLN02397 159 -FRDAGVPVRTYRYY-DPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAY 236 (423)
T ss_pred -HHHcCCeEEEeecc-cCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc
Confidence 33444444444321 223478999999888863 25566666 5888 8977664 57788899999999999986
Q ss_pred hcccccccC--CCCC---C--CCc-cEEEecCCccCC--CCCceEEE
Q 022463 171 ISGLVAAGV--IPSP---F--EYA-DVVTTTTHKSLR--GPRGAMIF 207 (297)
Q Consensus 171 ~~g~~~~~~--~~~~---~--~~~-D~~~~s~~K~l~--gp~gG~i~ 207 (297)
.-- ...+. ...+ + .+- =+++.|++|.++ |-+-|+++
T Consensus 237 ~~l-~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v 282 (423)
T PLN02397 237 QGF-ASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALS 282 (423)
T ss_pred CCc-cCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEE
Confidence 422 11110 0000 1 011 256789999864 34449885
No 294
>PRK12403 putative aminotransferase; Provisional
Probab=99.36 E-value=1.9e-10 Score=107.40 Aligned_cols=243 Identities=16% Similarity=0.105 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc-------CCCCeEEEe-cCC-CCCcccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL-------KPHDRIMAL-DLP-HGGHLSHGYQTDT 96 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~-------~~gd~Vl~~-~~~-~~~~~~~~~~~~~ 96 (297)
+...++. ++|+++++.+.+. .++++||+.++.++++... ++++.+++. ... |++..........
T Consensus 98 ~~~~~la----e~L~~~~p~~~~~---v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~ 170 (460)
T PRK12403 98 PAVIELS----ELLFSLLPGHYSH---AIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGM 170 (460)
T ss_pred HHHHHHH----HHHHHhCCCCcCE---EEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCC
Confidence 3444455 7788887744332 3666899988887776552 233445444 333 5544332211100
Q ss_pred c-----ccceeeeeeEeeecccC-CC--C------CcCCHHHHHHHhhh---cCCcEEEEc--CCCCCCccc----HHHH
Q 022463 97 K-----KISAVSIFFETMPYRLN-ES--T------GYIDYDQLEKSATL---FRPKLIVAG--ASAYARLYD----YERI 153 (297)
Q Consensus 97 ~-----~~~~~g~~~~~v~~~~~-~~--~------~~~d~~~l~~~l~~---~~~~~v~~~--~~~~G~~~~----~~~i 153 (297)
. +....+ +..++.+.. .. + ...+++++++.+.+ .++.+|++- .++-|...| ++++
T Consensus 171 ~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~l 248 (460)
T PRK12403 171 KFMHEMGGLIPD--VAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEI 248 (460)
T ss_pred ccccccCCCCCC--CEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHH
Confidence 0 000000 111221110 00 0 01123556666532 235566663 333466666 8999
Q ss_pred HHHHHhcCCEEEEehhhhccccccc-CCC-CCCC-CccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHH
Q 022463 154 RKVCNKQKAIMLADMAHISGLVAAG-VIP-SPFE-YADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEE 228 (297)
Q Consensus 154 ~~la~~~g~~livD~a~~~g~~~~~-~~~-~~~~-~~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~ 228 (297)
.++|++||+++|+|++|+ |.-..+ ... .-+. .+|+++++ |.|+|.. -|++++++ ++.+
T Consensus 249 r~lc~~~g~lLI~DEV~t-GfGRtG~~~a~e~~gv~PDiv~~g--K~lggG~~Piga~v~~~--------------~i~~ 311 (460)
T PRK12403 249 QRICRQYDVLLCADEVIG-GFGRTGEWFAHEHFGFEPDTLSIA--KGLTSGYVPMGGLVLSK--------------RIAE 311 (460)
T ss_pred HHHHHHcCCEEEEecccc-CCCcCchhhhhhhcCCCCCeEEEc--ccccccccceEEEEECH--------------HHHH
Confidence 999999999999999984 221111 100 0001 46988865 9987642 25555666 3344
Q ss_pred Hhhhcc--c-CCCCCCCchHHHHHHHHHHHHHhhhcChhhHH-HHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 229 KINQAV--F-PGLQGGPHNHTITGLAVALKQVCTLITFSHIH-VFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 229 ~~~~~~--~-~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
.+.... + -+.+.+.+...+++..++|+.+.++.-+++++ +....+.+.|.+..++.+.+.+++|+-
T Consensus 312 ~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G 381 (460)
T PRK12403 312 ALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAG 381 (460)
T ss_pred HHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecc
Confidence 332110 1 11122356678888889999887762234443 445555555555555667788888763
No 295
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.35 E-value=5.5e-11 Score=106.65 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 28 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 28 ~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
..+++ +.++++++.++++ |++|+|++ +...++. ++++|+ |+++.+.++.. ...++..|.++
T Consensus 42 ~~~lr----~~ia~~~~~~~~~----I~it~Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y--------~~~~~~~G~~v 103 (332)
T PRK06425 42 YTDIE----DQIKIYTQGLKIK----VLIGPGLTHFIYRLLS-YINVGN-IIIVEPNFNEY--------KGYAFTHGIRI 103 (332)
T ss_pred HHHHH----HHHHHHhCCCcce----EEECCCHHHHHHHHHH-HhCCCc-EEEeCCChHHH--------HHHHHHcCCeE
Confidence 45666 8899999998864 99999995 5543454 567875 55556433333 22344445445
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
..+ +.+. ...|.+.++ ..+++++++ +++| +|.+.+. ++|.++|+++++++|+|++..-- .......
T Consensus 104 ~~v--p~~~--~~~~~~~l~----~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~-~~~~~~~ 174 (332)
T PRK06425 104 SAL--PFNL--INNNPEILN----NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDF-VPNRAEE 174 (332)
T ss_pred EEE--eCCc--ccCcHHHHh----hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcc-ccccchh
Confidence 444 4442 344555444 237899998 7888 8988775 46667788999999999985421 1111000
Q ss_pred -CCC-CC--ccEEEecCCccCC--CCCceEEEEec
Q 022463 182 -SPF-EY--ADVVTTTTHKSLR--GPRGAMIFFRK 210 (297)
Q Consensus 182 -~~~-~~--~D~~~~s~~K~l~--gp~gG~i~~~~ 210 (297)
... .. --+++.|++|.++ |-+-|+++.++
T Consensus 175 ~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~ 209 (332)
T PRK06425 175 DVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD 209 (332)
T ss_pred HHHHhccCCCEEEEeecHHhcCCchhhheeeecCH
Confidence 000 01 1256789999764 33339999877
No 296
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.35 E-value=5.9e-11 Score=106.69 Aligned_cols=203 Identities=12% Similarity=0.044 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHcCCCC-CCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeee
Q 022463 29 DMAESLCQKRALEAFRLDP-EKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~-~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (297)
.+++ +.+++++|.+. ++ |++++|++ +.. ++..++++|| |+++.+++..... .++..|..+
T Consensus 56 ~~L~----~~ia~~~~~~~~~~----I~i~~Gs~e~i~-~l~~~~~~g~-v~v~~P~y~~y~~--------~~~~~g~~~ 117 (339)
T PRK06959 56 DGLA----ACAARYYGAPDAAH----VLPVAGSQAAIR-ALPALLPRGR-VGIAPLAYSEYAP--------AFARHGHRV 117 (339)
T ss_pred HHHH----HHHHHHhCCCCccc----EEECcCHHHHHH-HHHHhcCCCe-EEEcCCCcHHHHH--------HHHHCCCEE
Confidence 5555 99999999964 43 99999995 443 4455678887 7776644433322 233344333
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHH---HHhcCCEEEEehhhhcccccccCCC
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKV---CNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~l---a~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
++++.+. + .+.+ +++++++ +|+| +|.+.+.+++.++ |++++.++|+|+++.-......+..
T Consensus 118 --~~v~~~~-------~----~~~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~ 183 (339)
T PRK06959 118 --VPLDEAA-------D----TLPA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAA 183 (339)
T ss_pred --Eeecccc-------h----hccc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchh
Confidence 3334331 1 2222 4567766 7888 8998888777666 4578999999998653221111111
Q ss_pred CCCCCc-cEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHh
Q 022463 182 SPFEYA-DVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 182 ~~~~~~-D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
.. ..- =+++.|++|.++ |-+-|+++.++ ++.+.+.....+. +.+.+...++.++|+
T Consensus 184 ~~-~~~~vi~l~SfSK~~gl~GlRiGy~v~~~--------------~li~~l~~~~~~~---~vs~~~q~a~~~~L~--- 242 (339)
T PRK06959 184 HT-DRPGLVVLRSVGKFFGLAGVRAGFVLAAP--------------ALLAALRDALGAW---TVSGPARHAVRAAFA--- 242 (339)
T ss_pred cc-CCCCEEEEecChhhcCCcchheEEEecCH--------------HHHHHHHHhcCCC---CCcHHHHHHHHHHhC---
Confidence 00 111 167789999763 33349999877 4555555443222 223344444444443
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+..-.++.+++.++..+++.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~r~~l~~~L~~~ 268 (339)
T PRK06959 243 DAAWQAAMRERLAADGARLAALLRAH 268 (339)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 22134556666777777788777765
No 297
>PRK08637 hypothetical protein; Provisional
Probab=99.33 E-value=1.2e-10 Score=106.70 Aligned_cols=181 Identities=15% Similarity=0.037 Sum_probs=105.5
Q ss_pred CccCCCchhHHHHHHHHHHHHHHHcC-CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccc
Q 022463 19 ARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT 96 (297)
Q Consensus 19 ~~~~~~~~~~~~~e~~~~~~la~~~g-~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 96 (297)
...|+......++++.+.+++.+..+ .++++. .+|++|+|++ +...++.++++|||.|+++.+.|+.+.....
T Consensus 37 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~---- 111 (388)
T PRK08637 37 IFPYAPPQGIPELRDLWQEKMLRENPSLSGKKM-SLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFN---- 111 (388)
T ss_pred ccCCCCCCCCHHHHHHHHHHHhccCcccccccc-ceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH----
Confidence 34555566778888665555544332 222210 1488999984 6655778889999999999866655532111
Q ss_pred cccceeeeeeEeeecccCCCCCcCCHHHHHHHhh--hcCCc-EEEE-cCCC-CCCcccHH---HHHHHHHh-----cCCE
Q 022463 97 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT--LFRPK-LIVA-GASA-YARLYDYE---RIRKVCNK-----QKAI 163 (297)
Q Consensus 97 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~--~~~~~-~v~~-~~~~-~G~~~~~~---~i~~la~~-----~g~~ 163 (297)
...|.++..+ +...+++.+|++++++.++ ..+++ ++++ +++| +|.+.+.+ +|.++|++ |+++
T Consensus 112 ---~~~g~~vv~v--~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~ 186 (388)
T PRK08637 112 ---TRRGAEIVTY--PIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVV 186 (388)
T ss_pred ---HhcCCEEEEe--cccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 1223334344 4422345789999999887 21344 4545 5888 89776654 66666664 8999
Q ss_pred EEEehhhhcccccccCCCC---CC-C---CccEE-EecCCccCCCC--CceEEEEe
Q 022463 164 MLADMAHISGLVAAGVIPS---PF-E---YADVV-TTTTHKSLRGP--RGAMIFFR 209 (297)
Q Consensus 164 livD~a~~~g~~~~~~~~~---~~-~---~~D~~-~~s~~K~l~gp--~gG~i~~~ 209 (297)
+|+|+++.--......... .+ + ..-++ +.|++|.+..| +-|++++.
T Consensus 187 iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 187 AVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred EEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 9999986422111110000 00 0 12122 34889965443 34999865
No 298
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.31 E-value=1.4e-10 Score=104.05 Aligned_cols=206 Identities=15% Similarity=0.100 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHHcC---CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccccccccee
Q 022463 27 YIDMAESLCQKRALEAFR---LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 102 (297)
Q Consensus 27 ~~~~~e~~~~~~la~~~g---~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (297)
...+++ +.++++++ .++++ |++|+|++ +...++.++ |.|+++.++|..... .++..
T Consensus 57 ~~~~Lr----~aia~~~~~~~~~~~~----i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~--------~~~~~ 116 (335)
T PRK14808 57 PDEELI----EKILSYLDTDFLSKNN----VSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRI--------FAKAV 116 (335)
T ss_pred ChHHHH----HHHHHHhCCCCCCcce----EEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHH--------HHHHc
Confidence 456777 66666666 66654 99999994 665566655 678887754444432 34444
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~ 180 (297)
|.++..+ +.+ +++.++... + + +++++++ +++| +|.+.+.+++.+++ ++++++|+|+++.- .......
T Consensus 117 g~~~~~v--~~~-~~~~~~~~~----~-~-~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~-f~~~~~~ 185 (335)
T PRK14808 117 GAKFLEV--PLT-KDLRIPEVN----V-G-EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYE-FHGESYV 185 (335)
T ss_pred CCeEEEe--cCC-CcCCCChhH----c-c-CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhh-hcCCchH
Confidence 5444444 455 345444332 2 2 5688888 7888 99999999999999 57999999999653 1110000
Q ss_pred CCCCC-C-ccEEEecCCccCC--CCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 022463 181 PSPFE-Y-ADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 256 (297)
Q Consensus 181 ~~~~~-~-~D~~~~s~~K~l~--gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~ 256 (297)
. ... . -=+++.|++|.++ |-+-|++++++ ++.+.+.....+ .+.+.+...++.++++.
T Consensus 186 ~-~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~--------------~~~~~l~~~~~~---~~~~~~~q~a~~~~l~~ 247 (335)
T PRK14808 186 D-LLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE--------------KFIDAYNRVRLP---FNVSYVSQMFAKVALDH 247 (335)
T ss_pred H-HHHhCCCEEEEEechhhccCcccceEEEEeCH--------------HHHHHHHHhcCC---CCCCHHHHHHHHHHHhC
Confidence 0 000 1 1266789999875 33339999887 345545443322 22334444444555542
Q ss_pred HhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 257 VCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 257 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
.. -+++..+..+...+++.+.|++.
T Consensus 248 ~~---~~~~~~~~~~~~r~~l~~~L~~~ 272 (335)
T PRK14808 248 RE---IFEERTKFIVEERERMKSALREM 272 (335)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHC
Confidence 21 22333344444566677777665
No 299
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.30 E-value=3.9e-10 Score=104.39 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=126.3
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh---c--CCCCeEEEecCCCCCcccccccc-ccc------ccceeee
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---L--KPHDRIMALDLPHGGHLSHGYQT-DTK------KISAVSI 104 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~---~--~~gd~Vl~~~~~~~~~~~~~~~~-~~~------~~~~~g~ 104 (297)
++|++++..+.+. ..+.+||+.++..+++.. . +....|++....|++........ ... .....+
T Consensus 124 e~L~~~~p~~~~~---v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~- 199 (442)
T TIGR03372 124 KTLAALTPGKLKY---SFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPG- 199 (442)
T ss_pred HHHHHhCCCCcCE---EEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCC-
Confidence 6666666543322 345578998888766533 1 12456887777655543211111 000 000000
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhh-----cCCcEEEE-c-CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhcc
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVA-G-ASAYARLYD----YERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~-~-~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g 173 (297)
+..+ +. .|.+.+++.+.+ .++.+|++ . .++-|...| ++++.++|++||+++|+|++|+ |
T Consensus 200 -~~~~--p~------~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G 269 (442)
T TIGR03372 200 -FHHV--AF------GDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQT-G 269 (442)
T ss_pred -CEEe--CC------CCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeeccc-C
Confidence 1112 11 256777776642 24566666 3 333466666 8999999999999999999984 3
Q ss_pred ccccc-CCCC-CCC-CccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCC--chHH
Q 022463 174 LVAAG-VIPS-PFE-YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGP--HNHT 246 (297)
Q Consensus 174 ~~~~~-~~~~-~~~-~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~--~~~~ 246 (297)
.-..+ .... -+. .+|+++++ |.|++. +.|+++++++ +.+.+....+ ...+|. +...
T Consensus 270 ~GRtG~~~a~e~~gv~PDivt~g--K~lg~G~~Pigavv~~~~--------------i~~~~~~~~~-~~~~T~~gnp~~ 332 (442)
T TIGR03372 270 MGRTGKMFACEHEGVQPDILCLA--KALGGGVMPIGATIATEA--------------VFSVLFDNPF-LHTTTFGGNPLA 332 (442)
T ss_pred CCccccchhhhhcCCCCCeeeeh--hhhcCCcccceEEEecHH--------------HHHhhhccCc-cccCCCCCCHHH
Confidence 21111 1000 001 47988865 999764 2366666663 3333321110 112232 5678
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC-CcccccCCC
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE-NIEEDKGRP 294 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~g~~ 294 (297)
+++..++|+.+.++.-.++.++....+.+.|.+...+.+ .|.+++|+-
T Consensus 333 ~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~G 381 (442)
T TIGR03372 333 CAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKG 381 (442)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecce
Confidence 888889999997762245555555556555555445566 578888864
No 300
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=99.30 E-value=4.7e-10 Score=98.77 Aligned_cols=233 Identities=12% Similarity=0.059 Sum_probs=141.0
Q ss_pred CchhHHHHHHHHHHHHHHHcCC----CCCCCcceEEecCCh-HHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccc
Q 022463 24 GNEYIDMAESLCQKRALEAFRL----DPEKWGVNVQSLSGS-PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 98 (297)
Q Consensus 24 ~~~~~~~~e~~~~~~la~~~g~----~~~~~~~~v~~~sG~-~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~ 98 (297)
+-.+...+++++.+.+.+.-|. +|+. +++++|+ ++|..+.-.+..|||..|+|.+-++++-.... ..
T Consensus 119 dy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~----~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~--~r-- 190 (471)
T KOG0256|consen 119 DYHGLPSFRQAVAEFMERARGNRVKFDPER----VVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLR--WR-- 190 (471)
T ss_pred cccCchHHHHHHHHHHHHHhCCCCccCccc----eEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccce--ec--
Confidence 3355677787777777776554 5653 7777777 58886666778999999999876666632221 11
Q ss_pred cceeeeeeEeeecccCC-CCCcCCHHHHHHHhhh-----cCCcEEEE-cCCC-CCCcccHH---HHHHHHHhcCCEEEEe
Q 022463 99 ISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL-----FRPKLIVA-GASA-YARLYDYE---RIRKVCNKQKAIMLAD 167 (297)
Q Consensus 99 ~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~-----~~~~~v~~-~~~~-~G~~~~~~---~i~~la~~~g~~livD 167 (297)
+| ++.+|+.++. ++++++.+.+|.++.+ .+.+.|++ +|+| -|+..+-+ .+.+.|.++|+.+|+|
T Consensus 191 ---Tg--veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~D 265 (471)
T KOG0256|consen 191 ---TG--VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISD 265 (471)
T ss_pred ---cC--ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEee
Confidence 22 4445555554 3579999999998874 35788888 8999 78776655 5666778999999999
Q ss_pred hhhhcccccccCC-------CCCCCCcc--EEEecCCccCCCCCc--eEEEEecCchhhccCCccchhhHHHHhhhcccC
Q 022463 168 MAHISGLVAAGVI-------PSPFEYAD--VVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP 236 (297)
Q Consensus 168 ~a~~~g~~~~~~~-------~~~~~~~D--~~~~s~~K~l~gp~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (297)
+..+......... ..+-...| -++.|.+|-|+-|+= |+|+..++- ..........-
T Consensus 266 EIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~-------------VvsaA~kmssf 332 (471)
T KOG0256|consen 266 EIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNED-------------VVSAATKMSSF 332 (471)
T ss_pred hhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChH-------------HHHHHHHHhhc
Confidence 9976544332110 00000122 467899998733333 999987752 11111111000
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 237 GLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 237 ~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+..++.--..++++..= +.+.+. -+...+.|.+...+++.++|+++
T Consensus 333 ~~vSs~tQ~~la~LLSD-~~f~~~-yl~en~~Rl~~rh~~~~~gLk~l 378 (471)
T KOG0256|consen 333 GLVSSQTQYLLASLLSD-EEFTRE-YLRENNKRLRIRHRYIVEGLKAL 378 (471)
T ss_pred cCCcHHHHHHHHHHhch-HHHHHH-HHHHHHHHHHHHHHHHHhhHHhc
Confidence 11111111222332222 445544 56667777777778888888654
No 301
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.30 E-value=5.6e-10 Score=101.85 Aligned_cols=235 Identities=15% Similarity=0.068 Sum_probs=133.1
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCC-cccccccccccccc-----eeeeeeEe
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGG-HLSHGYQTDTKKIS-----AVSIFFET 108 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~-~~~~~~~~~~~~~~-----~~g~~~~~ 108 (297)
++|.+++..+... -.++.+||+.+|.++++.. ...+..||.....+++ +............. -..-.+..
T Consensus 106 e~L~~~~p~~~~~--~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~ 183 (447)
T COG0160 106 EKLTALAPGSGLK--KVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYH 183 (447)
T ss_pred HHHHHhCCcccCC--eEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEE
Confidence 5566666553211 2456678898888776643 2344557777666444 33222211111111 01111334
Q ss_pred eecccCCCC---------CcCCHHHHHHHhhh-----cCCcEEEE-cCCC-CCCcc-c---HHHHHHHHHhcCCEEEEeh
Q 022463 109 MPYRLNEST---------GYIDYDQLEKSATL-----FRPKLIVA-GASA-YARLY-D---YERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 109 v~~~~~~~~---------~~~d~~~l~~~l~~-----~~~~~v~~-~~~~-~G~~~-~---~~~i~~la~~~g~~livD~ 168 (297)
+|++..-.. .....+.++..+.+ .++.++++ .... -|... | ++++.++|++||+++|+|+
T Consensus 184 ~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DE 263 (447)
T COG0160 184 VPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADE 263 (447)
T ss_pred ecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 554432111 12233445554443 24677777 3222 34333 3 6799999999999999999
Q ss_pred hhhcccccccCCCCCCC----CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCc
Q 022463 169 AHISGLVAAGVIPSPFE----YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPH 243 (297)
Q Consensus 169 a~~~g~~~~~~~~~~~~----~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~ 243 (297)
.|+.-..-..+ +.++ .+|+++++ |.+++..- |.++.+++ +.+ +.+....++ ..-|
T Consensus 264 VQtG~GRTG~~--fa~E~~gv~PDivt~a--K~ig~G~Pl~avv~r~e--------------i~~-~~~g~~~~T-f~GN 323 (447)
T COG0160 264 VQTGFGRTGKM--FAFEHFGVEPDIVTLA--KSLGGGLPLSAVVGRAE--------------IMD-WPPGGHGGT-FGGN 323 (447)
T ss_pred cccCCCccccc--hhhhhcCCCCCEEEec--ccccCCCceeEEeccHH--------------hcc-cCCcccCCC-CCcC
Confidence 98632111111 1111 47999988 99977333 88888883 333 222222222 1224
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
...+++..+.|+.+.++.=.++..+....+.+.|.+..++.|.|.+++|+
T Consensus 324 pva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~ 373 (447)
T COG0160 324 PVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGL 373 (447)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceeccccc
Confidence 57777888889988876335566666667777777777778889999996
No 302
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.30 E-value=2.4e-10 Score=105.30 Aligned_cols=226 Identities=15% Similarity=0.132 Sum_probs=126.4
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--------CCCCeEEEecCCCCCcccccccccccccceeeeeeEe
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--------KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 108 (297)
++++++++.+. .++++||+.++..+++... ..+..|+..+..+++............ ... ..+..
T Consensus 88 ~~l~~~~~~~~-----v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~-~~~-~~~~~ 160 (406)
T PRK12381 88 KKLIDATFADR-----VFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQP-KYS-QDFAP 160 (406)
T ss_pred HHHHhhCCCCe-----EEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCc-ccc-cCCCC
Confidence 77777776542 3666788888887776541 245678877766555432111110000 000 00000
Q ss_pred eecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCC-C-C----CcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCC
Q 022463 109 MPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-Y-A----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 182 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~-~-G----~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~ 182 (297)
.+-.+. .....|++.+++.+.+ ++++|++.+.+ . | ...++++|.++|++||+++|+|++| .|....+. ..
T Consensus 161 ~~~~~~-~~~~~d~~~l~~~l~~-~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~gr~G~-~~ 236 (406)
T PRK12381 161 LPPDIR-HAAYNDLNSASALIDD-QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGVGRTGE-LY 236 (406)
T ss_pred CCCCee-EeCCCCHHHHHHhccC-CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCCCCCcc-hh
Confidence 000000 0112478999999976 78888885444 3 3 2345789999999999999999998 44322211 11
Q ss_pred C---CC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHH
Q 022463 183 P---FE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257 (297)
Q Consensus 183 ~---~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~ 257 (297)
. +. ..|++++ +|.+++. +-|+++.++ ++.+.+....... ..+.+....++..++|+.+
T Consensus 237 ~~~~~~v~pDi~t~--sK~l~gG~~ig~~~~~~--------------~~~~~~~~~~~~~-t~~~~pl~~aaa~a~l~~l 299 (406)
T PRK12381 237 AYMHYGVTPDVLTT--AKALGGGFPIGAMLTTE--------------KCASVMTVGTHGT-TYGGNPLASAVAGKVLELI 299 (406)
T ss_pred hhHhhCCCCCEEEe--hhhhhCCCceEEEEEcH--------------HHHhhcCCCCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 1 01 4676554 5998542 227777776 3444443322111 2234556777778888887
Q ss_pred hhhcChhhHHHHhhhhHHHHHhhccCC----CCcccccCCC
Q 022463 258 CTLITFSHIHVFSLHVYPAFVSNQNNS----ENIEEDKGRP 294 (297)
Q Consensus 258 ~~~~g~~~~~~~~~~l~~~l~~~l~~~----~~~~~~~g~~ 294 (297)
.+. .+.++.+++.+++.++|+++ +.+.+++|.+
T Consensus 300 ~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G 336 (406)
T PRK12381 300 NTP----EMLNGVKQRHDWFVERLNTINARYGLFSEIRGLG 336 (406)
T ss_pred hhc----cHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCe
Confidence 543 35566666666666666554 3355566654
No 303
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.28 E-value=5.8e-10 Score=102.66 Aligned_cols=211 Identities=13% Similarity=0.127 Sum_probs=118.8
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh---c-----CCCCeEEEecCC-CCCcccccccccc----cccceee
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---L-----KPHDRIMALDLP-HGGHLSHGYQTDT----KKISAVS 103 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~---~-----~~gd~Vl~~~~~-~~~~~~~~~~~~~----~~~~~~g 103 (297)
++++++++.+. .++++||+.+|.++++.. . ...+.|+..+.. |+++......... .+.....
T Consensus 89 ~~l~~~~~~~~-----~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~ 163 (403)
T PRK05093 89 KKLIDATFAER-----VFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKP 163 (403)
T ss_pred HHHHhhCCCCE-----EEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCC
Confidence 77777776542 477789998888777643 1 123456666555 4444322111000 0000000
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCC-CC-Cccc----HHHHHHHHHhcCCEEEEehhhhcccccc
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA-RLYD----YERIRKVCNKQKAIMLADMAHISGLVAA 177 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~-~G-~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~ 177 (297)
..+ +.++ ..|++.+++.+.+ ++++|++.+.+ .| ...| +++|.++|++||+++|+|++|+ |....
T Consensus 164 ~~~--~~~~------~~d~~~l~~~l~~-~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~ 233 (403)
T PRK05093 164 ADI--THVP------FNDLAAVKAVIDD-HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRT 233 (403)
T ss_pred CCc--EEeC------CCCHHHHHHHhcC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCC
Confidence 001 1111 2278999999876 78888885444 43 3333 8899999999999999999987 44222
Q ss_pred cCCCCCC---C-CccEEEecCCccCCC-CCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHH
Q 022463 178 GVIPSPF---E-YADVVTTTTHKSLRG-PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAV 252 (297)
Q Consensus 178 ~~~~~~~---~-~~D~~~~s~~K~l~g-p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~ 252 (297)
+. ..+. . ..|+.++ +|.+++ -+.|+++.++ ++.+.+....... ..+.+.+..++..+
T Consensus 234 g~-~~~~~~~~~~pdi~s~--sK~l~~G~rig~vv~~~--------------~i~~~l~~~~~~~-t~~~~~~~~~aa~a 295 (403)
T PRK05093 234 GD-LFAYMHYGVTPDILTS--AKALGGGFPIGAMLTTA--------------EIASHFKVGTHGS-TYGGNPLACAVAEA 295 (403)
T ss_pred cc-chhhhhcCCCCCEEEe--cccccCCcceEEEEEcH--------------HHHhhcCCCCCCC-CCCCCHHHHHHHHH
Confidence 21 1111 1 3676554 598863 2238888877 3444443221111 22335566777778
Q ss_pred HHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 253 ALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 253 al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+|+.+... ...++.++..+++.+.|+++
T Consensus 296 ~L~~~~~~----~~~~~~~~~~~~l~~~L~~~ 323 (403)
T PRK05093 296 VFDIINTP----EVLEGVKARRQRFVDGLQKI 323 (403)
T ss_pred HHHHHhhc----cHHHHHHHHHHHHHHHHHHH
Confidence 88777543 23455555666666666654
No 304
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.27 E-value=5.2e-10 Score=101.98 Aligned_cols=214 Identities=12% Similarity=0.117 Sum_probs=121.8
Q ss_pred EEecCChHHHHHHHHHh--cCCCCeEEEecCC-CCCcccccccccccccc-eeeeeeEeeecccCCCCCcCCHHHHHHHh
Q 022463 54 VQSLSGSPSNFQVYTAL--LKPHDRIMALDLP-HGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNESTGYIDYDQLEKSA 129 (297)
Q Consensus 54 v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~-~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~~~l~~~l 129 (297)
++++||+.++..+++.. ...++.|++.+.. |++.............. .-+..+..++ . ....|++.+++.+
T Consensus 88 ~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~dl~~l~~~l 162 (375)
T PRK04260 88 FFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFS--Y---AIFNDLNSVKALV 162 (375)
T ss_pred EEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeE--E---eCCCCHHHHHHhc
Confidence 45578888888666654 2456677776655 44443322111100000 0000000010 0 0124889999988
Q ss_pred hhcCCcEEEE-cCCC-CCCccc----HHHHHHHHHhcCCEEEEehhhhcccccccCCCCCC----CCccEEEecCCccCC
Q 022463 130 TLFRPKLIVA-GASA-YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF----EYADVVTTTTHKSLR 199 (297)
Q Consensus 130 ~~~~~~~v~~-~~~~-~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~----~~~D~~~~s~~K~l~ 199 (297)
.+ ++.+|++ ...+ .|...+ ++++.++|+++|+++|+|++|. |....+. ..+. ...|++ +++|.|+
T Consensus 163 ~~-~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~-~~~~~~~~~~pdi~--t~sK~l~ 237 (375)
T PRK04260 163 NK-NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-GMGRTGK-LYAFEHYGIEPDIF--TLAKGLA 237 (375)
T ss_pred CC-CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccc-hhhhHhhCCCCCEE--Eeccccc
Confidence 75 7777777 4334 565544 7999999999999999999985 4432221 1110 146766 4569986
Q ss_pred C-CCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHH
Q 022463 200 G-PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFV 278 (297)
Q Consensus 200 g-p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~ 278 (297)
+ .+.|+++.++ ++.+.+....... ..+.+....++..++|+.+....-.+++++..+.+.+.+.
T Consensus 238 ~G~~ig~~~~~~--------------~~~~~~~~~~~~~-t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~ 302 (375)
T PRK04260 238 NGVPVGAMLAKS--------------SLGGAFGYGSHGS-TFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQ 302 (375)
T ss_pred CCcceEEEEEcH--------------HHHhhcCCCCCCC-CCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3 3448888877 3344333221111 2233456677777888877654245666777777777777
Q ss_pred hhccCCCCcccccC
Q 022463 279 SNQNNSENIEEDKG 292 (297)
Q Consensus 279 ~~l~~~~~~~~~~g 292 (297)
+.+.+.+.+.+.+|
T Consensus 303 ~~~~~~~~~~~~~~ 316 (375)
T PRK04260 303 KALQDKETVTTVRG 316 (375)
T ss_pred HHHhhCCCeeEEec
Confidence 66666655555544
No 305
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=99.25 E-value=3.3e-10 Score=102.81 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=121.7
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHH---hcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeee
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA---LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 110 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~---~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 110 (297)
-+..+++++|.+.. +..+-.|++ +..+++++ .-+.+++|+++...|+....... . .+...| ++.+.
T Consensus 115 ~Qs~i~eLTGmdva----NaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~---t-~a~~~g--~~iv~ 184 (429)
T PF02347_consen 115 YQSMICELTGMDVA----NASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLR---T-YAAPLG--IEIVE 184 (429)
T ss_dssp HHHHHHHHHTSSEE-----SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHH---H-HCCHCC--EEEEE
T ss_pred HHHHHHHhhCCCcc----CCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHH---H-hhhhCC--eEEEE
Confidence 34999999999863 345545553 22223332 23345699999988887754221 1 122223 44454
Q ss_pred cccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC-Ccc
Q 022463 111 YRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YAD 188 (297)
Q Consensus 111 ~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~-~~D 188 (297)
++.+ +++..| ++ ++.+|++ +|+.+|...++++|.+++|++|.++++ ++.- ..+.....|.+ |+|
T Consensus 185 ~~~~-~~~~~d--------~~-~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad~---~aL~~l~~Pge~GAD 250 (429)
T PF02347_consen 185 VPLD-EDGTTD--------DD-DTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GADP---NALGGLKSPGEYGAD 250 (429)
T ss_dssp E-BB-TTCSB---------ST-TEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGGC---CGCCTC--GGGGT-S
T ss_pred eccc-ccCCcc--------cc-CeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecCH---HHHhCcCChhhcCcc
Confidence 4555 444445 44 8889999 666689999999999999999999988 5532 22333333444 899
Q ss_pred EEEecCCccC------CCCCceEEEEecCch--hh-c-------cCCccchh-hH---HHHhhhcccCCCCCCCchHHHH
Q 022463 189 VVTTTTHKSL------RGPRGAMIFFRKGVK--EI-N-------KQGKEVFY-DY---EEKINQAVFPGLQGGPHNHTIT 248 (297)
Q Consensus 189 ~~~~s~~K~l------~gp~gG~i~~~~~~~--~~-~-------~~g~~~~~-~~---~~~~~~~~~~~~~~t~~~~~~~ 248 (297)
+++.+ ||.| +||..|++.+++++. +. . ..|..... .+ .+.+......+...|...+...
T Consensus 251 I~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~ 329 (429)
T PF02347_consen 251 IVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLAL 329 (429)
T ss_dssp EEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHH
T ss_pred EEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHH
Confidence 99665 7765 445458999998852 11 1 12322110 01 1112222211111122222222
Q ss_pred HHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 249 GLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 249 al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
....-+.++... |+.++-+++...+.|+.++|++.
T Consensus 330 ~a~~Yl~~~G~~-GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 330 AAAIYLAYLGPE-GLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445566666 99999999999999999999997
No 306
>PLN02624 ornithine-delta-aminotransferase
Probab=99.25 E-value=7.5e-10 Score=103.79 Aligned_cols=210 Identities=17% Similarity=0.092 Sum_probs=115.5
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcC---------CCC-eEEEecCCCCCcc-cccccccc----c--cc
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK---------PHD-RIMALDLPHGGHL-SHGYQTDT----K--KI 99 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~---------~gd-~Vl~~~~~~~~~~-~~~~~~~~----~--~~ 99 (297)
++++++++.+. .++.+||+.++..+++.... ++. .|+.....|++.. ........ . +.
T Consensus 124 ~~L~~~~~~~~-----~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~ 198 (474)
T PLN02624 124 EYLTSMFGYDM-----VLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGP 198 (474)
T ss_pred HHHHhhcCCCe-----EEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCC
Confidence 77778887543 36678999888877653321 133 4555544433331 11110000 0 00
Q ss_pred ceeeeeeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE-cCCC-CCCccc----HHHHHHHHHhcCCEEEEehhhh
Q 022463 100 SAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA-GASA-YARLYD----YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 100 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~-~~~~-~G~~~~----~~~i~~la~~~g~~livD~a~~ 171 (297)
...+ +..+ +. -|++.+++.++. .++++|++ ...+ .|.+.| +++|.++|++||+++|+|++|.
T Consensus 199 ~~~~--~~~~--~~------~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t 268 (474)
T PLN02624 199 LLPG--HLKV--DF------GDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT 268 (474)
T ss_pred CCCC--ceEe--CC------CCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 0011 1111 11 268899998864 24667777 3333 677766 9999999999999999999986
Q ss_pred ccccccc-CC--CCCCCCccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHH
Q 022463 172 SGLVAAG-VI--PSPFEYADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHT 246 (297)
Q Consensus 172 ~g~~~~~-~~--~~~~~~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~ 246 (297)
|.-..+ .. .+.-...|++++| |.++++ +.|+++.+++ +.+.+..... +...+.+...
T Consensus 269 -G~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~~--------------i~~~~~~~~~-~~T~~g~pl~ 330 (474)
T PLN02624 269 -GLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLADKD--------------VMLCIKPGEH-GSTFGGNPLA 330 (474)
T ss_pred -CcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeeeecHH--------------HHhHhccCCc-CCCCCCCHHH
Confidence 321111 00 0000157888875 988765 2377777663 3333322211 1122345677
Q ss_pred HHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 247 ITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 247 ~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
.++..++|+.+.+. + +.++..++.++|.++|++
T Consensus 331 ~aaa~aaLe~l~~~-~---l~~~~~~~~~~l~~~L~~ 363 (474)
T PLN02624 331 SAVAMAALQVVQDE-K---LAERSAKLGQELRDQLQK 363 (474)
T ss_pred HHHHHHHHHHHHhc-h---HHHHHHHHHHHHHHHHHH
Confidence 78888888887654 3 333444444555444443
No 307
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.25 E-value=9.4e-10 Score=99.51 Aligned_cols=216 Identities=14% Similarity=0.138 Sum_probs=122.9
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh-cCCC-CeEEEecCCCCCcccccccc-cccccceeeeeeEeeeccc
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPH-DRIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRL 113 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~-~~~g-d~Vl~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~ 113 (297)
++++++++.+. .++.+||+.++..+++.. ..+| ++|++....+++........ .....+ .+ +.+...++
T Consensus 73 ~~l~~~~~~~~-----v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~-~~--~~p~~~~~ 144 (364)
T PRK04013 73 EELSKWVNYEY-----VYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYR-ED--FEPLVPGF 144 (364)
T ss_pred HHHHhhcCCCE-----EEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccc-cC--CCCCCCCc
Confidence 66777776543 366688898888777655 3344 88999887766553222111 000000 00 10000011
Q ss_pred CCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCC-C-Cccc---HHHHHHHHHhcCCEEEEehhhhccccccc-CCCC-CCC
Q 022463 114 NESTGYIDYDQLEKSATLFRPKLIVA-GASAY-A-RLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS-PFE 185 (297)
Q Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~-G-~~~~---~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~-~~~ 185 (297)
..-. ..|++.+++.+.+ ++++|++ ..... | ...| ++++.++|++||+++|.|++++ |. ..+ .... -+.
T Consensus 145 ~~~~-~~d~~~l~~~i~~-~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~-RtG~~~a~~~~g 220 (364)
T PRK04013 145 KHIP-FNDVEAAKEAITK-ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS-GL-RTGKFLAIEHYK 220 (364)
T ss_pred EEec-CCCHHHHHHHhcC-CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC-CCCchhHHHhcC
Confidence 1001 1267889988876 8888888 32223 3 3445 8899999999999999999986 33 221 1100 011
Q ss_pred -CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcCh
Q 022463 186 -YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITF 263 (297)
Q Consensus 186 -~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~ 263 (297)
.+|+++++ |.|++..- |.++.+.+ . ......+ +.+.+...+++..+.|+.+.++ ++
T Consensus 221 v~PDiv~~g--K~lggG~P~~a~~~~~~--------------~----~~~~~~~-T~~gnp~~~aaa~a~l~~i~~~-~l 278 (364)
T PRK04013 221 VEPDIVTMG--KGIGNGVPVSLTLTNFD--------------V----ERGKHGS-TFGGNPLACKAVAVTLRILRRE-RL 278 (364)
T ss_pred CCCCEEEec--ccccCCceeEEEEeccc--------------c----cCCCcCC-CCCcCHHHHHHHHHHHHHHHhc-cH
Confidence 57988886 99876322 66666653 1 1111111 2234567788888889999877 43
Q ss_pred hhHHHHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 264 SHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 264 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
.++.++. + ..+.. +.|.+++|+-
T Consensus 279 ---~~~~~~~---l-~~l~~-~~v~~vRG~G 301 (364)
T PRK04013 279 ---VEKAGEK---F-IEIKG-ERVVTTRGRG 301 (364)
T ss_pred ---HHHHHHH---H-HHhcc-CcceeeeeCc
Confidence 2222222 2 23333 6688888874
No 308
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.24 E-value=7.5e-10 Score=102.55 Aligned_cols=232 Identities=12% Similarity=0.062 Sum_probs=124.6
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--------CCCCeEEEecCCCCCccccccccccccc---ceee--
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--------KPHDRIMALDLPHGGHLSHGYQTDTKKI---SAVS-- 103 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~~---~~~g-- 103 (297)
++|.+++....+. ..+.+||+.++.++++... ....+|+.....|++............. ...+
T Consensus 92 ~~l~~~~p~~~~~---v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~ 168 (423)
T PRK05964 92 QRLVALTPGGLDH---VFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLL 168 (423)
T ss_pred HHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcC
Confidence 6666666422222 3555788888887766431 1245788877776654322211110000 0000
Q ss_pred eeeEeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEEcC--CC-CCCcc----cHHHHHHHHHhcCCEEEEehhhhccc
Q 022463 104 IFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAGA--SA-YARLY----DYERIRKVCNKQKAIMLADMAHISGL 174 (297)
Q Consensus 104 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~--~~-~G~~~----~~~~i~~la~~~g~~livD~a~~~g~ 174 (297)
.....++++.+ +....+++.+++.+.+ .++.+|++.+ .. .|... .+++|.++|++||+++|+|++|+ |.
T Consensus 169 ~~~~~~~~~~~-d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~ 246 (423)
T PRK05964 169 FEQVTAPFPPD-GYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIAT-GF 246 (423)
T ss_pred CCCEEeCCCcc-hhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CC
Confidence 00222333322 1112237888888864 1445666633 33 35333 37899999999999999999984 32
Q ss_pred cccc-CCC-CCCC-CccEEEecCCccCCCC-C-ceEEEEecCchhhccCCccchhhHHHHhhhc--ccCCC-CC--CCch
Q 022463 175 VAAG-VIP-SPFE-YADVVTTTTHKSLRGP-R-GAMIFFRKGVKEINKQGKEVFYDYEEKINQA--VFPGL-QG--GPHN 244 (297)
Q Consensus 175 ~~~~-~~~-~~~~-~~D~~~~s~~K~l~gp-~-gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~-~~--t~~~ 244 (297)
...+ ... ..+. .+|+++++ |+|+|+ . .|+++.+++ +.+.+... ..... .+ +.+.
T Consensus 247 gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~p~~av~~~~~--------------i~~~~~~~~~~~~~~~~~T~~~np 310 (423)
T PRK05964 247 GRTGTLFACEQAGVSPDIMCLS--KGLTGGYLPLAATLCTAE--------------IFEAFYSDDRAKAFMHSPSYTANP 310 (423)
T ss_pred CcCcchhHHHhcCCCCCeeeee--hhhhcCcccceEEEEcHH--------------HHHhhhcCCcccccccCCCCCcCH
Confidence 1111 100 0001 47887765 999775 2 377888774 34433211 00111 22 3466
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC---CCCcccccCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN---SENIEEDKGR 293 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~g~ 293 (297)
..+++..++++.+.++ + +.++...+.+++.+.|++ .+.+.+++|.
T Consensus 311 ~~~aaa~a~l~~l~~~-~---~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~ 358 (423)
T PRK05964 311 LACAAANASLDLFEDE-P---VLERVAALSAGLAEGLEPFRDLPGVADVRVL 358 (423)
T ss_pred HHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHhhccCCCeEEeecc
Confidence 7788888889888655 2 445555556666655544 4455555554
No 309
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.23 E-value=2e-10 Score=113.21 Aligned_cols=224 Identities=9% Similarity=0.029 Sum_probs=135.8
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh-c--CCCCeEEEecCCCCCcccccccccccccceeeeeeEeee
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-L--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 110 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 110 (297)
-+.++++++|.+..+ ..+-.+++ +..+++++. . +++++|++++..|+.....+.- .+...| ++.+.
T Consensus 114 ~Qt~i~eLtGm~~aN----aSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t----~a~~~g--~~v~~ 183 (939)
T TIGR00461 114 FQTVVSDLTGLPVAN----ASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHT----RAKPFG--IEVIV 183 (939)
T ss_pred HHHHHHHHHCCChhh----hhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHH----HHHhcC--cEEEE
Confidence 559999999999743 45545553 333344443 2 3458999999989877644331 112222 22221
Q ss_pred cccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCccE
Q 022463 111 YRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADV 189 (297)
Q Consensus 111 ~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~ 189 (297)
+|+++|++.+ ++.++++ .++.+|.+.|+++|.+++|++|+++++++-..+..+......+ |+|+
T Consensus 184 ---------~~~~~l~~~~---~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~---GaDi 248 (939)
T TIGR00461 184 ---------VDCSDIKKAV---DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHY---GADI 248 (939)
T ss_pred ---------EcHHHHhhcC---CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHc---CCcE
Confidence 2455565555 4667767 4555899999999999999999999997654444333333333 8999
Q ss_pred EEecCCccC-----CCCCceEEEEecCchhh---ccCCccchhh----HH----HHhhhcccCCCCCCCch-HHHHHHHH
Q 022463 190 VTTTTHKSL-----RGPRGAMIFFRKGVKEI---NKQGKEVFYD----YE----EKINQAVFPGLQGGPHN-HTITGLAV 252 (297)
Q Consensus 190 ~~~s~~K~l-----~gp~gG~i~~~~~~~~~---~~~g~~~~~~----~~----~~~~~~~~~~~~~t~~~-~~~~al~~ 252 (297)
++.+.+++. +||..|++.+++++.-. ...|++...+ +. .+-++.......++.+. ..+.++.+
T Consensus 249 ~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a 328 (939)
T TIGR00461 249 VLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVA 328 (939)
T ss_pred EeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHH
Confidence 988887753 47777999999875221 2223221110 10 00111111111222222 23334344
Q ss_pred H--HHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 253 A--LKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 253 a--l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
+ +.++... |+.++-+++..++.++.++|++.
T Consensus 329 ~~Y~~~~G~~-GL~~iA~~~~~~a~~l~~~L~~~ 361 (939)
T TIGR00461 329 SSYCVYHGPK-GLKNIARRIHSLTSILANGLEND 361 (939)
T ss_pred HHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 5566666 99999999999999999999883
No 310
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.22 E-value=1e-09 Score=98.70 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccccccccc------e
Q 022463 30 MAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKIS------A 101 (297)
Q Consensus 30 ~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~------~ 101 (297)
++|-+..+.+.+.+..-+. --+++|||.+++.+++.. ....|+|+.-+..|+++.+.+..-...++. .
T Consensus 93 e~Ei~~Aell~~~~p~~e~----vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s 168 (432)
T COG0001 93 ELEVELAELLIERVPSIEK----VRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSS 168 (432)
T ss_pred HHHHHHHHHHHHhcCcccE----EEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCC
Confidence 3444444777777776321 255578998877666544 445677888777777776544332111110 0
Q ss_pred eeee----eEeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEE--cCCCCCCccc----HHHHHHHHHhcCCEEEEehh
Q 022463 102 VSIF----FETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA--GASAYARLYD----YERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 102 ~g~~----~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~--~~~~~G~~~~----~~~i~~la~~~g~~livD~a 169 (297)
.|.. -..+.++ .-|++.+++++.+. +..+|++ -..|.|.+.| +++++++|++||+++|.|+.
T Consensus 169 ~Gvp~~~a~~ti~~~------yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV 242 (432)
T COG0001 169 PGVPADVAKHTLVLP------YNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV 242 (432)
T ss_pred CCCChhhhccEEEec------CCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 0000 0112222 34899999999874 4567777 3667787666 56999999999999999998
Q ss_pred hhccccccc-CCCCCCC-CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC--Cch
Q 022463 170 HISGLVAAG-VIPSPFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG--PHN 244 (297)
Q Consensus 170 ~~~g~~~~~-~~~~~~~-~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t--~~~ 244 (297)
...--++.+ .+.. +. .+|+.+++ |-++|.-- |++-.+. ++.+.+.+.-.....|| -|.
T Consensus 243 iTGFR~~~gGaq~~-~gi~PDlttlG--KiIGGGlP~ga~gGr~--------------eiM~~~~p~g~vyqaGT~sgnp 305 (432)
T COG0001 243 ITGFRVALGGAQGY-YGVEPDLTTLG--KIIGGGLPIGAFGGRA--------------EIMEQLAPLGPVYQAGTLSGNP 305 (432)
T ss_pred hhhcccCCcccccc-cCcCcchhhhh--hhhcCCcceeeeccHH--------------HHHhhhCCCCCccccCCCCCcH
Confidence 653222221 1111 11 46877776 98877444 7777777 45554443322222233 345
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
..++|-.++|+.+.+..+ ..++...+.++|.++|++
T Consensus 306 lamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~ 341 (432)
T COG0001 306 LAMAAGLATLEELMTEEG---VYERLDALGERLAEGLRA 341 (432)
T ss_pred HHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHH
Confidence 777787888988887423 444444455555555443
No 311
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.22 E-value=1.9e-09 Score=100.14 Aligned_cols=231 Identities=12% Similarity=0.052 Sum_probs=122.6
Q ss_pred HHHHHHcCCCCCCCcceEEe-cCChHHHHHHHHHh--cCCCCeEEEecCCCCC-ccccccccc-----cc--ccceeeee
Q 022463 37 KRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTAL--LKPHDRIMALDLPHGG-HLSHGYQTD-----TK--KISAVSIF 105 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~-~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~-~~~~~~~~~-----~~--~~~~~g~~ 105 (297)
++|++++.-..+ .++| +||+.++..+++.. ......|+.....+++ +........ .. .....+
T Consensus 93 ~~L~~~~~~~~~----~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~-- 166 (433)
T PRK08117 93 EELAEITPGGLD----CFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGS-- 166 (433)
T ss_pred HHHHHhCCCCCC----EEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCC--
Confidence 777777732222 2555 78998888777643 2234567766655443 322110000 00 000111
Q ss_pred eEeeecccCCC---C------CcCCHHHHHHHhhh----cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEE
Q 022463 106 FETMPYRLNES---T------GYIDYDQLEKSATL----FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLA 166 (297)
Q Consensus 106 ~~~v~~~~~~~---~------~~~d~~~l~~~l~~----~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~liv 166 (297)
+..+|++.... . ...|++++++.++. .++.+|++- .++-|...| +++|.++|++||+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~ 246 (433)
T PRK08117 167 VYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIF 246 (433)
T ss_pred cEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 11222221000 0 01256667777652 245666763 333567777 89999999999999999
Q ss_pred ehhhhcccccccCC-C-CCCC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCC
Q 022463 167 DMAHISGLVAAGVI-P-SPFE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGP 242 (297)
Q Consensus 167 D~a~~~g~~~~~~~-~-~~~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~ 242 (297)
|++|+ |....+.. . ..+. .+|+++ +.|.+++. +.|+++.+++ +.+.+....... +.+.
T Consensus 247 DEv~t-G~gr~G~~~~~~~~gv~pDi~t--~sK~lg~G~pigav~~~~~--------------i~~~~~~~~~~~-T~~~ 308 (433)
T PRK08117 247 DEVQT-GFGRTGEWFAAQTFGVVPDIMT--IAKGIASGLPLSAVVASKE--------------LMEQWPLGSHGT-TFGG 308 (433)
T ss_pred ecchh-ccCccccchhHhhcCCCCCEee--hhhhccCCCcceeEEEcHH--------------HHhhccCCCCCC-CCCc
Confidence 99987 43222110 0 0011 357654 45998652 2377777773 333332211111 2234
Q ss_pred chHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC----CCCcccccCCCC
Q 022463 243 HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN----SENIEEDKGRPC 295 (297)
Q Consensus 243 ~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~g~~~ 295 (297)
+...+++..++|+.+.+. .+.++.+.+.+++.++|++ .+.+.+++|.+.
T Consensus 309 np~~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl 361 (433)
T PRK08117 309 NPVACAAALATLEVIKEE----KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGL 361 (433)
T ss_pred CHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCc
Confidence 567788888889887544 2444455555555555544 454666777654
No 312
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.22 E-value=5.7e-10 Score=103.38 Aligned_cols=229 Identities=12% Similarity=0.075 Sum_probs=122.4
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--CCCCeEEEecCCCCCcccccccc-cc----cccceeeeee---
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQT-DT----KKISAVSIFF--- 106 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~-~~----~~~~~~g~~~--- 106 (297)
+++++++.. .+. ..+++||+.++..+++... ..+++|+.....|++........ .. .+....+...
T Consensus 97 ~~L~~~~~~-~~~---v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (426)
T PRK00062 97 ELVIELVPS-IEM---VRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDF 172 (426)
T ss_pred HHHHHhCCC-CCE---EEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCccc
Confidence 666666531 222 3555777788887777642 34678888877766653111100 00 0000000000
Q ss_pred --EeeecccCCCCCcCCHHHHHHHhhh--cCCcEEEE-c-CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhccccc
Q 022463 107 --ETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA-G-ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVA 176 (297)
Q Consensus 107 --~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~~-~-~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~ 176 (297)
....++ ..|++.+++.+.+ .++.+|++ . .++.|...| +++|.++|++||+++|+|++|. |...
T Consensus 173 ~~~~~~~~------~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~ 245 (426)
T PRK00062 173 AKHTLTAP------YNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRV 245 (426)
T ss_pred ccceEEcC------CCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-cccc
Confidence 001111 1378899988863 25667777 2 555787777 8999999999999999999986 4321
Q ss_pred ccCCCCC-CC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcc--cCCCCCCCchHHHHHHH
Q 022463 177 AGVIPSP-FE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV--FPGLQGGPHNHTITGLA 251 (297)
Q Consensus 177 ~~~~~~~-~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~al~ 251 (297)
.+..... +. ..|+++ ++|.+++. +.|+++.++ ++.+.+.... ......+.+...+++..
T Consensus 246 g~~~~~~~~~~~pDi~~--~gK~l~~G~p~ga~~~~~--------------~i~~~~~~~~~~~~~~T~~~~p~~~aaa~ 309 (426)
T PRK00062 246 ALGGAQGYYGVTPDLTT--LGKIIGGGLPVGAFGGRR--------------EIMEQLAPLGPVYQAGTLSGNPLAMAAGL 309 (426)
T ss_pred CCccHHHHhCCCcchHh--hhhHhhCCCcceeeeEHH--------------HHHHhhccCCCceecccCcCCHHHHHHHH
Confidence 1110000 01 357654 45988653 236677766 3444443211 11112234567777888
Q ss_pred HHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccC
Q 022463 252 VALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKG 292 (297)
Q Consensus 252 ~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g 292 (297)
++|+.+.+..-++++++....+.+.|.+.+++.+.+.+++|
T Consensus 310 a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg 350 (426)
T PRK00062 310 ATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNR 350 (426)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 88888865422334444444444444433334555554444
No 313
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.20 E-value=2e-09 Score=100.07 Aligned_cols=236 Identities=11% Similarity=0.045 Sum_probs=122.7
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcc-ccccccc-----c--cccceeeeee
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHL-SHGYQTD-----T--KKISAVSIFF 106 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~-~~~~~~~-----~--~~~~~~g~~~ 106 (297)
++|.+++....+. ..+.+||+.++..+++.. ......|+.....|++.. ....... . .+. ..+ +
T Consensus 91 ~~L~~~~p~~~~~---v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~-~~~--~ 164 (443)
T PRK08360 91 EKLIEIAPGDNPK---VSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGE-LSD--V 164 (443)
T ss_pred HHHHHhCCCCCCE---EEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCC-CCC--c
Confidence 5666776543232 244468888888766643 234456777665544432 2111000 0 000 111 2
Q ss_pred EeeecccCCC-CC--------cCCHHHHHHHhhh----cCCcEEEEcCC-C-CCCccc----HHHHHHHHHhcCCEEEEe
Q 022463 107 ETMPYRLNES-TG--------YIDYDQLEKSATL----FRPKLIVAGAS-A-YARLYD----YERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 107 ~~v~~~~~~~-~~--------~~d~~~l~~~l~~----~~~~~v~~~~~-~-~G~~~~----~~~i~~la~~~g~~livD 167 (297)
..++++.... .+ .-+++.+++.+.. .++++|++.|. + .|...| +++|.++|++||+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 244 (443)
T PRK08360 165 HYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVD 244 (443)
T ss_pred EEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 2222221000 00 0234556666642 36788888432 3 565544 789999999999999999
Q ss_pred hhhhc-ccccccCCCCCCC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCch
Q 022463 168 MAHIS-GLVAAGVIPSPFE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 244 (297)
Q Consensus 168 ~a~~~-g~~~~~~~~~~~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 244 (297)
++|.. |..........+. ..|++++ +|.+++. +.|++++++ ++.+.+....... ..+.+.
T Consensus 245 Ev~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~~G~pigav~~~~--------------~i~~~~~~~~~~~-T~~~~p 307 (443)
T PRK08360 245 EVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLGGGLPISATIGRA--------------EIMDSLPPLAHAF-TLSGNP 307 (443)
T ss_pred ccccCCCcCccchhhhhcCCCCCEEEe--cccccCCceeEEEEEcH--------------HHHhhhcCCCCCC-CCCcCH
Confidence 99862 2211100000011 4687766 5998642 238888876 3444443221111 223344
Q ss_pred HHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCCC
Q 022463 245 HTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 295 (297)
Q Consensus 245 ~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~ 295 (297)
...++..++|+.+.+..-++++++....+.+.+.+..++.+.+.+++|++.
T Consensus 308 ~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl 358 (443)
T PRK08360 308 VASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGL 358 (443)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccce
Confidence 567777888888876522344444444444444333334566778888764
No 314
>PRK07046 aminotransferase; Validated
Probab=99.20 E-value=1.5e-09 Score=101.05 Aligned_cols=231 Identities=13% Similarity=0.102 Sum_probs=124.9
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccccccc-----cceeee---
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKK-----ISAVSI--- 104 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-----~~~~g~--- 104 (297)
..+++.++++.+. ..+.+||+.++..+++.. ....++|+.-...|++...........+ ....+.
T Consensus 120 lAe~l~~~~~~~~-----v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~ 194 (453)
T PRK07046 120 VGEELARRFGLPY-----WQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHD 194 (453)
T ss_pred HHHHHHHHhCCCE-----EEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCcc
Confidence 3366666765432 255678888887666644 2345678877766666422111000000 000000
Q ss_pred -eeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhcccccc
Q 022463 105 -FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAA 177 (297)
Q Consensus 105 -~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~ 177 (297)
.-..+.+++ -|++.+++.+...+..+|++. ..+.|...| +++++++|++||+++|.|++++...-..
T Consensus 195 ~~~~~~~~~~------nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~G 268 (453)
T PRK07046 195 LTATTRVVEF------NDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPG 268 (453)
T ss_pred ccCceEeeCC------CCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCc
Confidence 000111111 278999998864467777773 333454444 7899999999999999999986221111
Q ss_pred cCCCCCCC-CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhccc---C---CCCC--CCchHHH
Q 022463 178 GVIPSPFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVF---P---GLQG--GPHNHTI 247 (297)
Q Consensus 178 ~~~~~~~~-~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~---~~~~--t~~~~~~ 247 (297)
+.... ++ .+|+++++ |.++|..- |+++.+++ +.+.+..... . ...+ +.+...+
T Consensus 269 g~~~~-~gv~PDi~t~g--K~lggG~Pi~av~g~~~--------------i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~ 331 (453)
T PRK07046 269 GYTRA-HGLEPDFLVVG--KPIAGGVPCAVYGFSAE--------------LAERAQAAKASAPPGHSGIGTTLSANALAM 331 (453)
T ss_pred chhHH-hCCCccceeeh--hhhcCCCcceeeeehHH--------------HHHHHhhccccCCCCCceeCCCCcccHHHH
Confidence 11110 01 47988875 99876433 77887773 3443332100 0 1122 3456778
Q ss_pred HHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 248 TGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 248 ~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
++..+.|+.+.+.+-++++.+....+.+.+.+.+++.+.+..++|.
T Consensus 332 aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~ 377 (453)
T PRK07046 332 AAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRV 377 (453)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 8888888888665234545554455544444433444434344443
No 315
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=99.19 E-value=1.6e-09 Score=96.07 Aligned_cols=141 Identities=14% Similarity=0.244 Sum_probs=102.8
Q ss_pred CCccCCCchhHHHHHHHHHHHHHHHcCCC-CCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCccccccccc
Q 022463 18 GARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD 95 (297)
Q Consensus 18 ~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~ 95 (297)
.+.+|+.+.++.++...+++.....+..+ .++| .+.+|+|.+ ++..+++.++.+||.|++...++.+.+.....
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~w--diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a-- 167 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNW--DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEA-- 167 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccCCCCCCc--eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccc--
Confidence 35677888888888866665444344443 3443 689999984 77779999999999999998777776554432
Q ss_pred ccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc--------CCcEEEE--cCCC-CCCcccH---HHHHHHHHhcC
Q 022463 96 TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--------RPKLIVA--GASA-YARLYDY---ERIRKVCNKQK 161 (297)
Q Consensus 96 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--------~~~~v~~--~~~~-~G~~~~~---~~i~~la~~~g 161 (297)
.| +..+|++.| ...+++|.|++.+... +|++++. +..| +|...++ ++|.+||++|+
T Consensus 168 ------~g--v~~ipv~md--~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyD 237 (472)
T KOG0634|consen 168 ------LG--VKIIPVKMD--QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYD 237 (472)
T ss_pred ------cC--ceEEecccc--CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 22 445666665 4568999999998753 2567766 5666 8866655 49999999999
Q ss_pred CEEEEehhhhc
Q 022463 162 AIMLADMAHIS 172 (297)
Q Consensus 162 ~~livD~a~~~ 172 (297)
.++|+|+.+..
T Consensus 238 fLIVeDdpYy~ 248 (472)
T KOG0634|consen 238 FLIVEDDPYYF 248 (472)
T ss_pred EEEEecCccce
Confidence 99999998654
No 316
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.19 E-value=2.2e-09 Score=98.74 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=90.8
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCC-CC-Ccc----cHHHHHHHHHhcCCEEEEehhhhccccccc-CCC-CCCC-CccEEE
Q 022463 121 DYDQLEKSATLFRPKLIVAGASA-YA-RLY----DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIP-SPFE-YADVVT 191 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~-~G-~~~----~~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~-~~~~-~~D~~~ 191 (297)
|++.+++.+...++.++++.|.+ .| ... -+++|.++|++||+++|+|++|+ |....+ ... .... .+|+++
T Consensus 175 d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t 253 (408)
T PRK04612 175 DVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVT 253 (408)
T ss_pred CHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEE
Confidence 78899988865355666665444 44 322 27899999999999999999986 221111 100 0001 357666
Q ss_pred ecCCccCCCCC-ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHh
Q 022463 192 TTTHKSLRGPR-GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 270 (297)
Q Consensus 192 ~s~~K~l~gp~-gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~ 270 (297)
+| |.+++.- -|+++.++ ++.+.+....... ..+.+....++..++|+.+.++ .+.++.
T Consensus 254 ~~--K~l~~G~piga~~~~~--------------~~~~~~~~~~~~~-t~~~~p~~~aaa~a~L~~~~~~----~l~~~~ 312 (408)
T PRK04612 254 LA--KALGGGFPIGAMLAGP--------------KVAETMQFGAHGT-TFGGNPLAAAVARVALRKLASP----QIAANV 312 (408)
T ss_pred Ec--chhcCCCceEEEEECH--------------HHHhhhcCCCcCC-CCCCCHHHHHHHHHHHHHHHhc----cHHHHH
Confidence 65 9886522 26777666 3333333222122 2234567777888888888755 244445
Q ss_pred hhhHHHHHhhccC----CCCcccccCCCC
Q 022463 271 LHVYPAFVSNQNN----SENIEEDKGRPC 295 (297)
Q Consensus 271 ~~l~~~l~~~l~~----~~~~~~~~g~~~ 295 (297)
+++.+++.++|++ .+.+.+++|+..
T Consensus 313 ~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl 341 (408)
T PRK04612 313 ARQSAALRAGLEALNAEFGVFAQVRGRGL 341 (408)
T ss_pred HHHHHHHHHHHHHHHhhCCCeeeeeccce
Confidence 5555555555544 556777888753
No 317
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.19 E-value=2.3e-09 Score=100.91 Aligned_cols=150 Identities=19% Similarity=0.113 Sum_probs=89.4
Q ss_pred HHHHHHhhh---cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhh-cccccccC--CCCCCCCccEE
Q 022463 123 DQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVV 190 (297)
Q Consensus 123 ~~l~~~l~~---~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~~~~--~~~~~~~~D~~ 190 (297)
+++++.+.. .++.+|++- ..+-|...| +++|+++|++||+++|+|++|. +|-..... .... -.+|++
T Consensus 247 ~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~g-v~PDiv 325 (504)
T PLN02760 247 DNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYN-IKPDLV 325 (504)
T ss_pred HHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcC-CCCcEE
Confidence 457776642 235566663 223466776 8999999999999999999983 44332110 1000 047988
Q ss_pred EecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhc-------ccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 191 TTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA-------VFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 191 ~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
+++ |.|++. +-|+++++++ +.+.+... .... +.+-+...+++..++|+.+.++
T Consensus 326 tlg--K~lggG~~PigAv~~~~~--------------i~d~~~~~~~~~~~~~h~~-T~~gnPl~~Aaala~Le~i~~~- 387 (504)
T PLN02760 326 SLA--KALSSAYMPIGAVLVSPE--------------ISDVIHSQSNKLGSFAHGF-TYSGHPVSCAVALEALKIYKER- 387 (504)
T ss_pred Eec--ccccCCccccceEeecHH--------------HHhhhhcccccccCcccCC-CCCCCHHHHHHHHHHHHHHHhC-
Confidence 876 999763 2355777773 44433321 0111 2223567888888889988765
Q ss_pred ChhhHHHHhhhhHHHHHhhc---cCCCCcccccCCC
Q 022463 262 TFSHIHVFSLHVYPAFVSNQ---NNSENIEEDKGRP 294 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l---~~~~~~~~~~g~~ 294 (297)
+ +.++.+.+.++|.++| ++.+.+.+++|+.
T Consensus 388 ~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~G 420 (504)
T PLN02760 388 N---IPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTG 420 (504)
T ss_pred C---HHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCc
Confidence 3 3444555555555544 4455566677764
No 318
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.19 E-value=3e-09 Score=99.19 Aligned_cols=227 Identities=9% Similarity=0.046 Sum_probs=122.0
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh---cC-C-CCeEEEecCCCCCcccccccc-cccccce--eeeeeEe
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---LK-P-HDRIMALDLPHGGHLSHGYQT-DTKKISA--VSIFFET 108 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~---~~-~-gd~Vl~~~~~~~~~~~~~~~~-~~~~~~~--~g~~~~~ 108 (297)
++|++++..+.+. ..+.+||+.++..+++.. .. + ...|+.....|++........ ....... .......
T Consensus 131 e~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~ 207 (459)
T PRK11522 131 KTLAALTPGKLKY---SFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGF 207 (459)
T ss_pred HHHHHhCCCCCCE---EEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCC
Confidence 5566665433222 345578888888766643 21 2 346777776655543211111 0000000 0000000
Q ss_pred eecccCCCCCcCCHHHHHHHhhh-----cCCcEEEE-c-CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhcccccc
Q 022463 109 MPYRLNESTGYIDYDQLEKSATL-----FRPKLIVA-G-ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAA 177 (297)
Q Consensus 109 v~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~-~-~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~ 177 (297)
..++ ..|++.+++.+.. .++.+|++ . .++-|...| ++++.++|++||+++|+|++|+ |.-..
T Consensus 208 ~~~~------~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G~GRt 280 (459)
T PRK11522 208 RHVP------FGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-GMGRT 280 (459)
T ss_pred cccC------CCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-cCCcc
Confidence 1111 1267888887753 13456666 3 333566666 8999999999999999999985 33111
Q ss_pred c-CCCC-CCC-CccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCC--chHHHHHH
Q 022463 178 G-VIPS-PFE-YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGP--HNHTITGL 250 (297)
Q Consensus 178 ~-~~~~-~~~-~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~al 250 (297)
+ .... -+. .+|+++++ |.|++. +-|.++++++ ..+.+....+ ...+|. +...+++.
T Consensus 281 G~~~a~e~~gv~PDivt~g--K~lggG~~Pigav~~~~~--------------i~~~~~~~~~-~~~~T~~gnp~~~Aaa 343 (459)
T PRK11522 281 GKMFACEHENVQPDILCLA--KALGGGVMPIGATIATEE--------------VFSVLFDNPF-LHTTTFGGNPLACAAA 343 (459)
T ss_pred chhhhhhccCCCCCEEEec--hhhhCCCccceeEEEcHH--------------HHHHhccCCc-ccCCCCCCCHHHHHHH
Confidence 1 0000 001 46988775 999763 2355555553 3332221111 112333 66778888
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC----CC-CcccccCCC
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN----SE-NIEEDKGRP 294 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~----~~-~~~~~~g~~ 294 (297)
.++|+.+.++ + +.++.+.+.++|.++|++ .+ .|.+++|+.
T Consensus 344 la~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~G 388 (459)
T PRK11522 344 LATINVLLEQ-N---LPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKG 388 (459)
T ss_pred HHHHHHHhcc-h---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEece
Confidence 8999988765 3 445555566666665554 45 467788864
No 319
>PRK06062 hypothetical protein; Provisional
Probab=99.18 E-value=3.8e-09 Score=98.40 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCccc-ccccccc----c-ccceeeeeeEe
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLS-HGYQTDT----K-KISAVSIFFET 108 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~-~~~~~~~----~-~~~~~g~~~~~ 108 (297)
++|.+++..+.+. ..+.+||+.++..+++.. .....+|+.....|++... ....... . .....+ +..
T Consensus 102 e~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~--~~~ 176 (451)
T PRK06062 102 RLIAERAPGDLSK---VFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAG--VVH 176 (451)
T ss_pred HHHHHhCCCCCCE---EEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCC--CEE
Confidence 5566665432222 244478888888776643 2334678877766555432 1111000 0 000111 111
Q ss_pred eecccCCC-CC--cCC-------HHHHHHHhhh---cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehh
Q 022463 109 MPYRLNES-TG--YID-------YDQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 109 v~~~~~~~-~~--~~d-------~~~l~~~l~~---~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a 169 (297)
++.+.... .+ .-| ++.+++.++. .++.+|++- ..+-|...| +++|.++|++||+++|+|++
T Consensus 177 ~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV 256 (451)
T PRK06062 177 FFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEV 256 (451)
T ss_pred eCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecc
Confidence 11111000 00 012 5778888853 245677773 333466666 89999999999999999999
Q ss_pred hhc-ccccc----cCCCCCCCCccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcccC-CCCCC
Q 022463 170 HIS-GLVAA----GVIPSPFEYADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP-GLQGG 241 (297)
Q Consensus 170 ~~~-g~~~~----~~~~~~~~~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~t 241 (297)
|+. |-... ..... .+|+++++ |.|++. +-|+++++++ +.+.+....+. +.+.+
T Consensus 257 ~tGfGRtG~~~a~~~~gv---~PDi~t~g--K~lggG~~Pigav~~~~~--------------i~~~~~~~~~~~~~T~~ 317 (451)
T PRK06062 257 MAGFGRTGKWFAIEHFGV---VPDLITFA--KGVNSGYVPLGGVAISEA--------------IAATFADRPYPGGLTYS 317 (451)
T ss_pred ccCCCcCcHHHHHHhcCC---CCCeeeec--hhhhcCCcCcEEEEEcHH--------------HHHHhccCCCCCCCCCC
Confidence 862 11110 11111 47988876 999873 2356666663 34444321111 11223
Q ss_pred CchHHHHHHHHHHHHHhhhcChhhHHHHh-hhhHHHHHhhccCCCCcccccCCC
Q 022463 242 PHNHTITGLAVALKQVCTLITFSHIHVFS-LHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 242 ~~~~~~~al~~al~~~~~~~g~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
-+...+++..++|+.+.++.-++++.+.. ..+.+.|.+..++.+.+.+++|..
T Consensus 318 gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~G 371 (451)
T PRK06062 318 GHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLG 371 (451)
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccc
Confidence 35678888889999887662233333333 234445554444566677777764
No 320
>PRK06105 aminotransferase; Provisional
Probab=99.18 E-value=5.6e-09 Score=97.51 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=92.9
Q ss_pred HHHHHHHhhh---cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhh-cccccc----cCCCCCCCCc
Q 022463 122 YDQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA----GVIPSPFEYA 187 (297)
Q Consensus 122 ~~~l~~~l~~---~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~~----~~~~~~~~~~ 187 (297)
++++++.+.. .++.+|++- ..+-|...| +++++++|++||+++|+|++|. .|-... ..... .+
T Consensus 204 ~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v---~P 280 (460)
T PRK06105 204 ANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI---KP 280 (460)
T ss_pred HHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC---CC
Confidence 4567777742 245677773 223466555 8899999999999999999984 443221 11111 47
Q ss_pred cEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhccc---C---CCCCCCchHHHHHHHHHHHHHhh
Q 022463 188 DVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVF---P---GLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 188 D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~---~~~~t~~~~~~~al~~al~~~~~ 259 (297)
|+++++ |.|+|. +.|+++.+++ +.+.+..... . ..+.+.+...+++..++|+.+.+
T Consensus 281 Di~~~g--K~lggG~~P~~av~~~~~--------------i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~ 344 (460)
T PRK06105 281 DILVMS--KQLSSSYQPLSAVLMNEK--------------VYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEE 344 (460)
T ss_pred Ceeeee--cccccCcccceEEEEcHH--------------HHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 988877 999774 3577777773 3443332110 0 11223455777777888999987
Q ss_pred hcChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 260 LITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
++-++++++....+.+.|.+. ++.+.|.+++|+
T Consensus 345 ~~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~ 377 (460)
T PRK06105 345 RDLVGNAAERGARLQARLRAL-ADHPLVGEVRGV 377 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEec
Confidence 633455555555555555442 555667777775
No 321
>PRK08354 putative aminotransferase; Provisional
Probab=99.18 E-value=2.4e-09 Score=95.17 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=93.1
Q ss_pred HHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccC
Q 022463 36 QKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 114 (297)
Q Consensus 36 ~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 114 (297)
+++++++++. + |++|+|++ +...++ .++.+||.|+++.+.|...... ++..|.++ +.+
T Consensus 46 ~~~ia~~~~~---~----I~vt~G~~~al~~~~-~~~~~gd~vlv~~P~y~~~~~~--------~~~~g~~~--~~~--- 104 (311)
T PRK08354 46 EEEFSKLFGE---P----IVITAGITEALYLIG-ILALRDRKVIIPRHTYGEYERV--------ARFFAARI--IKG--- 104 (311)
T ss_pred HHHHHHHHCC---C----EEECCCHHHHHHHHH-HhhCCCCeEEEeCCCcHHHHHH--------HHHcCCEE--eec---
Confidence 3788888873 2 99999995 544333 4556999999998666655432 22333223 221
Q ss_pred CCCCcCCHHHHHHHhhhcCCcEEEE-cCCC-CCCcccH---HHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCccE
Q 022463 115 ESTGYIDYDQLEKSATLFRPKLIVA-GASA-YARLYDY---ERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADV 189 (297)
Q Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~-~G~~~~~---~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~ 189 (297)
.+|++.+++.++ +++++++ +|+| +|.+.+. ++|.++|+++|+++|+|+++.--... + ...+ ..--+
T Consensus 105 ----~~d~~~l~~~~~--~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~-~-~~~~-~~~vi 175 (311)
T PRK08354 105 ----PNDPEKLEELVE--RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKK-P-ESPE-GENII 175 (311)
T ss_pred ----CCCHHHHHHhhc--CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccc-c-cccC-CCcEE
Confidence 357888988876 4666666 7888 8977765 56677788999999999996432111 1 1110 12346
Q ss_pred EEecCCccCC--CCCceEEEE
Q 022463 190 VTTTTHKSLR--GPRGAMIFF 208 (297)
Q Consensus 190 ~~~s~~K~l~--gp~gG~i~~ 208 (297)
++.|++|.++ |-+-|+++.
T Consensus 176 ~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 176 KLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred EEeccHhhcCCccceeeeeee
Confidence 7889999874 333498887
No 322
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=99.18 E-value=6.8e-10 Score=94.16 Aligned_cols=173 Identities=20% Similarity=0.222 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCccccccccccc-ccce--e
Q 022463 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK-KISA--V 102 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-~~~~--~ 102 (297)
-.-+.|+ +-.|+.||++..- +...+.|||.+...++-.+++|||+.+.....-..++.-...+... .-.+ -
T Consensus 65 ~GRdtLe----~vyA~vf~aE~a~--VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~df 138 (416)
T COG4100 65 LGRDTLE----RVYAQVFGAEAAL--VRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDF 138 (416)
T ss_pred cchhHHH----HHHHHHhccccce--eeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHh
Confidence 4556777 7889999998765 6788899998776788899999999997653322221111111100 0111 1
Q ss_pred eeeeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEEcCC-CCC-----CcccHHHHHHHHHhc--CCEEEEehhhhccc
Q 022463 103 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS-AYA-----RLYDYERIRKVCNKQ--KAIMLADMAHISGL 174 (297)
Q Consensus 103 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~-~~G-----~~~~~~~i~~la~~~--g~~livD~a~~~g~ 174 (297)
|..++-++ +. .++.+|.+.+...+++ +||+|.+.-| .|+ .+.+++++.++.|+. |+.++||.++.-
T Consensus 139 gi~Y~~v~--Lt-~~gkiD~~~v~~~i~~-~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE-- 212 (416)
T COG4100 139 GIKYKAVP--LT-ADGKIDIQAVKTAISD-RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE-- 212 (416)
T ss_pred Ccceeecc--cc-cCCcccHHHHHHhcCc-cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh--
Confidence 22244444 43 4689999999999998 9999999322 233 345667777777775 789999988432
Q ss_pred ccccCCCCCCC-CccEEEecCCccCCC---CCceEEEEecCc
Q 022463 175 VAAGVIPSPFE-YADVVTTTTHKSLRG---PRGAMIFFRKGV 212 (297)
Q Consensus 175 ~~~~~~~~~~~-~~D~~~~s~~K~l~g---p~gG~i~~~~~~ 212 (297)
.-....+ -+ ++|++..|.-|+-+| -.||++..+.++
T Consensus 213 FvE~~EP--t~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ 252 (416)
T COG4100 213 FVEEKEP--THVGADLIAGSLIKNPGGGIAKTGGYIAGKAEL 252 (416)
T ss_pred hhhccCc--cccchhhhccceeeCCCCceeeccceeechHHH
Confidence 2111111 12 899999999998766 455889988875
No 323
>PLN00144 acetylornithine transaminase
Probab=99.17 E-value=4.2e-09 Score=96.19 Aligned_cols=155 Identities=11% Similarity=0.124 Sum_probs=95.7
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCC-CC-C--ccc--HHHHHHHHHhcCCEEEEehhhhccccccc-CCCC-CCC-CccEEE
Q 022463 121 DYDQLEKSATLFRPKLIVAGASA-YA-R--LYD--YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS-PFE-YADVVT 191 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~-~G-~--~~~--~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~-~~~-~~D~~~ 191 (297)
|++.+++.+...++++|++.|.. .| . ..+ +++|.++|++||+++|+|++++. ....+ .... -.. ..|+++
T Consensus 155 d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg-~gr~g~~~~~~~~~~~PDi~t 233 (382)
T PLN00144 155 NLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCG-LGRTGYLWAHEAYGVEPDIMT 233 (382)
T ss_pred CHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC-CCccchHhhhhhcCCCCCEEE
Confidence 68999988865467888884332 23 2 223 78999999999999999999752 21111 1000 001 468666
Q ss_pred ecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHh
Q 022463 192 TTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 270 (297)
Q Consensus 192 ~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~ 270 (297)
+| |.|++. +.|+++.+++ +.+.+....... ..+.+....++..++|+++.+..-.+++.+..
T Consensus 234 ~s--K~l~~G~pig~v~~~~~--------------~~~~~~~~~~~~-T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g 296 (382)
T PLN00144 234 LA--KPLAGGLPIGAVLVTEK--------------VASAINPGDHGS-TFAGGPLVCNAALAVLDKISKPGFLASVAKKG 296 (382)
T ss_pred ec--ccccCCcceEEEEEcHH--------------HHhccCCCCCCC-CCCCCHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 65 998643 3388888773 444443221111 22345566777788889987652345556666
Q ss_pred hhhHHHHHhhccCCCCcccccCC
Q 022463 271 LHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 271 ~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
+.+.+.+.+.+.+.+.+.+++|.
T Consensus 297 ~~l~~~l~~~~~~~~~~~~vrg~ 319 (382)
T PLN00144 297 EYLRELLRRKLGGNPHVKEVRGV 319 (382)
T ss_pred HHHHHHHHHHHhhCCCceeeecC
Confidence 66666666666667666666664
No 324
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.16 E-value=2.2e-09 Score=99.94 Aligned_cols=235 Identities=12% Similarity=0.102 Sum_probs=121.4
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccc------ccccc--ceeeeee
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT------DTKKI--SAVSIFF 106 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~------~~~~~--~~~g~~~ 106 (297)
+++++.+.....+ -..+.+||+.++..+++.. ....++|++....|++.......+ ...+. ...+...
T Consensus 106 ~~l~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~ 183 (443)
T PRK06058 106 EQLNRLTPGDHEK--RSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYR 183 (443)
T ss_pred HHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceE
Confidence 5666666432111 1356688988888766632 233477888776655543111000 00000 0111001
Q ss_pred EeeecccCCC-CCcC--------CHHHHHHHhhhcCCcEEEEcCCC--CCCccc----HHHHHHHHHhcCCEEEEehhhh
Q 022463 107 ETMPYRLNES-TGYI--------DYDQLEKSATLFRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 107 ~~v~~~~~~~-~~~~--------d~~~l~~~l~~~~~~~v~~~~~~--~G~~~~----~~~i~~la~~~g~~livD~a~~ 171 (297)
.+.+.+.+.. .... ..+.+++.+...++.+|++.+.. -|...| +++|.++|++||+++|.|+++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t 263 (443)
T PRK06058 184 APMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT 263 (443)
T ss_pred cCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 1111111100 0001 12233344332356777774332 344433 7899999999999999999986
Q ss_pred ccccccc-CC--CCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHH
Q 022463 172 SGLVAAG-VI--PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTI 247 (297)
Q Consensus 172 ~g~~~~~-~~--~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 247 (297)
|..-.+ .. ....-.+|+++++ |.+++..- |+++.+++ +.+.+..... ..+.+.+...+
T Consensus 264 -GfgRtG~~fa~~~~gv~PDiv~~g--K~l~~G~Pi~av~~~~~--------------i~~~~~~~~~-~~T~~gnpl~~ 325 (443)
T PRK06058 264 -GFARTGAWFACEHEGIVPDLITTA--KGIAGGLPLSAVTGRAE--------------IMDAPHPGGL-GGTYGGNPVAC 325 (443)
T ss_pred -CCCcChhhhHHHhcCCCCCEEEEc--ccccCCCccEEEEEcHH--------------HHhhccCCCC-CCCCCCCHHHH
Confidence 321111 10 1000146998886 99865322 77887773 4443332211 11334466778
Q ss_pred HHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC----CCCcccccCCCC
Q 022463 248 TGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN----SENIEEDKGRPC 295 (297)
Q Consensus 248 ~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~g~~~ 295 (297)
++..++|+.+.+. + +.++..++.++|.++|++ .+.+.+++|...
T Consensus 326 aaa~a~L~~~~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~ 373 (443)
T PRK06058 326 AAALAAIETIEED-D---LVARARQIEALMTDRLRALAAEDDRIGDVRGRGA 373 (443)
T ss_pred HHHHHHHHHHHHc-C---HHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccce
Confidence 8888889888655 2 344444445555555544 466777887653
No 325
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.16 E-value=1.5e-08 Score=94.20 Aligned_cols=152 Identities=17% Similarity=0.229 Sum_probs=90.5
Q ss_pred HHHHHHHhhh---cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhh-cccccccC-CCCCCC-CccE
Q 022463 122 YDQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV-IPSPFE-YADV 189 (297)
Q Consensus 122 ~~~l~~~l~~---~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~~~~-~~~~~~-~~D~ 189 (297)
++.+++.+.. .++.+|++. .++.|...| +++|+++|++||+++|+|++|+ .|-..... ... +. .+|+
T Consensus 201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~-~gv~PDi 279 (442)
T PRK13360 201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQY-FGVTPDL 279 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhh-cCCCCce
Confidence 4677777753 245566663 333567777 8999999999999999999984 33222110 000 11 4688
Q ss_pred EEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhc------ccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 190 VTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 190 ~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
++++ |.|++. +-|.++++++ +.+.+... .+...+.+.+...+++..++|+.+.+.
T Consensus 280 vt~g--K~l~gG~~P~gav~~~~~--------------i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~- 342 (442)
T PRK13360 280 LTCA--KGLTNGAIPMGAVFVSSE--------------IHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE- 342 (442)
T ss_pred eeee--eccccCccceEEEEEcHH--------------HHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 8775 999753 2355666663 33332211 011112234667788888899988766
Q ss_pred ChhhHHHHhhhhHHHHHhhccC---CCCcccccCCC
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNN---SENIEEDKGRP 294 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~g~~ 294 (297)
+ +.++.+++.+++.+.|++ .+.+.+++|.-
T Consensus 343 ~---l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~G 375 (442)
T PRK13360 343 G---LLTRAARLAPYWEDALHSLRDAPHVIDIRNLG 375 (442)
T ss_pred C---HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccc
Confidence 4 444555555555555543 45566677653
No 326
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.15 E-value=6.8e-09 Score=96.04 Aligned_cols=218 Identities=11% Similarity=0.072 Sum_probs=116.6
Q ss_pred eEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccc------cccccceeeeeeEeeecccCCCCC---cCC
Q 022463 53 NVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLNESTG---YID 121 (297)
Q Consensus 53 ~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~~~~~---~~d 121 (297)
..+.+||+.++..+++.. .....+|+.....|++........ ...+....-..+..++++.+. .+ .-+
T Consensus 104 ~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~ 182 (421)
T PRK09792 104 TAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDS 182 (421)
T ss_pred EEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHH
Confidence 366678988888766544 233456787776655543111110 001100000012234444331 11 123
Q ss_pred HHHHHHHhhh----cCCcEEEEcCCC--CCCc-cc---HHHHHHHHHhcCCEEEEehhhhc-ccccccCCC-CCC-CCcc
Q 022463 122 YDQLEKSATL----FRPKLIVAGASA--YARL-YD---YERIRKVCNKQKAIMLADMAHIS-GLVAAGVIP-SPF-EYAD 188 (297)
Q Consensus 122 ~~~l~~~l~~----~~~~~v~~~~~~--~G~~-~~---~~~i~~la~~~g~~livD~a~~~-g~~~~~~~~-~~~-~~~D 188 (297)
++.+++.+.+ .++++|++.+.. .|.. .| +++|.++|++||+++|+|+++.. |-.. .... ..+ ...|
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G-~~~a~~~~~~~pD 261 (421)
T PRK09792 183 LDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG-KLFAMDHYADKPD 261 (421)
T ss_pred HHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC-chhHHHhcCCCCc
Confidence 5778888762 256788774322 4543 35 78999999999999999999763 2111 1000 001 1568
Q ss_pred EEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHH
Q 022463 189 VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIH 267 (297)
Q Consensus 189 ~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~ 267 (297)
++++| |.|++..- |+++++++ +.+.+....... +.+.+...+++..+.++.+.+. +..
T Consensus 262 i~t~g--K~l~~G~pigav~~~~~--------------i~~~~~~~~~~~-T~~gnpl~~aaa~a~l~~l~~~----~~~ 320 (421)
T PRK09792 262 LMTMA--KSLAGGMPLSGVVGNAN--------------IMDAPAPGGLGG-TYAGNPLAVAAAHAVLNIIDKE----SLC 320 (421)
T ss_pred EEEee--hhhcCCCceEEEEEcHH--------------HHhccCCCCcCC-CCCCCHHHHHHHHHHHHHHHhh----hHH
Confidence 76665 99865322 77888773 444333222111 2234556677777888888655 233
Q ss_pred HHhhhhHHHHHhhcc----CCCCcccccCC
Q 022463 268 VFSLHVYPAFVSNQN----NSENIEEDKGR 293 (297)
Q Consensus 268 ~~~~~l~~~l~~~l~----~~~~~~~~~g~ 293 (297)
++.+.+.+++.+.|+ +.|.+.+++|+
T Consensus 321 ~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~ 350 (421)
T PRK09792 321 ERANQLGQRLKNTLIDAKESVPAIAAVRGL 350 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcceeccc
Confidence 334444444444443 45667777775
No 327
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.14 E-value=1.2e-08 Score=94.41 Aligned_cols=232 Identities=15% Similarity=0.131 Sum_probs=124.0
Q ss_pred HHHHHHcCCCC-CCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccc------ccc--ccceeeee
Q 022463 37 KRALEAFRLDP-EKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT------DTK--KISAVSIF 105 (297)
Q Consensus 37 ~~la~~~g~~~-~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~------~~~--~~~~~g~~ 105 (297)
+++.+++.... +. ..+.+||+.++.++++.. .....+|+.....|++.......+ ... +....+
T Consensus 90 ~~l~~~~p~~~~~~---v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~-- 164 (425)
T PRK07495 90 ERLNALVPGDFAKK---TIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPD-- 164 (425)
T ss_pred HHHHHhCCCCCCCE---EEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCC--
Confidence 55556654321 22 345578888888766643 234556887776655542111000 000 001111
Q ss_pred eEeeecccCCCCCcCC----HHHHHHHhhh----cCCcEEEEc--CCCCCCcc----cHHHHHHHHHhcCCEEEEehhhh
Q 022463 106 FETMPYRLNESTGYID----YDQLEKSATL----FRPKLIVAG--ASAYARLY----DYERIRKVCNKQKAIMLADMAHI 171 (297)
Q Consensus 106 ~~~v~~~~~~~~~~~d----~~~l~~~l~~----~~~~~v~~~--~~~~G~~~----~~~~i~~la~~~g~~livD~a~~ 171 (297)
+..++++.+ .. .++ ++.+++.+.. .++.+|++. ..+.|... .+++|.++|++||+++|+|+++.
T Consensus 165 ~~~~~~~~~-~~-g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t 242 (425)
T PRK07495 165 VYHVPFPVE-LH-GVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT 242 (425)
T ss_pred eEEecCCcc-cc-cccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 223433322 11 122 4455666642 246777773 33455332 36799999999999999999986
Q ss_pred ccccccc-CCCC-CCC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHH
Q 022463 172 SGLVAAG-VIPS-PFE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTI 247 (297)
Q Consensus 172 ~g~~~~~-~~~~-~~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 247 (297)
|.-..+ .... ... .+|++++| |.+++. +.|+++++++ +.+.+....... ..+.+...+
T Consensus 243 -G~gr~G~~~a~~~~gv~pDi~tls--K~l~~G~pigav~~~~~--------------i~~~~~~~~~~~-T~~~~pl~~ 304 (425)
T PRK07495 243 -GFARTGKLFAMEHHEVAADLTTMA--KGLAGGFPLAAVTGRAE--------------IMDAPGPGGLGG-TYGGNPLGI 304 (425)
T ss_pred -cCCcCCCceeecccCCCCCEEeeh--hhhcCCccceEEEEcHH--------------HHhccCCCCcCC-CCCCCHHHH
Confidence 332221 1000 011 46877765 988653 2378888773 343333221111 223455677
Q ss_pred HHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 248 TGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 248 ~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
++..++++.+.+..-.+++++....+.+.+.+..+..|.+.+++|.
T Consensus 305 aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~ 350 (425)
T PRK07495 305 AAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIADIRGP 350 (425)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecC
Confidence 7778889988765223445555555555555544556677777776
No 328
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=99.13 E-value=1.7e-09 Score=93.85 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=136.5
Q ss_pred CCCccCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcC-----CCCeEEEecCCCCCccccc
Q 022463 17 PGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-----PHDRIMALDLPHGGHLSHG 91 (297)
Q Consensus 17 ~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~-----~gd~Vl~~~~~~~~~~~~~ 91 (297)
.|+..|.++.....|. +.+.+.||.+. .+-+..|-.+....+..+++ ||...+++++.|..+....
T Consensus 70 ~GDEAYagsrs~~~L~----~avkdifGfq~-----~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h 140 (471)
T COG3033 70 RGDEAYAGSRSYYALA----DAVKDIFGFQY-----TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGH 140 (471)
T ss_pred ccchhhcccccHHHHH----HHHHHhcCcee-----eeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHH
Confidence 3455666666678888 66678888765 24445666554434444555 4545555555444432211
Q ss_pred ccccccccceeeeeeEeeeccc--CC-----CCCcCCHHHHHHHhhhc---CCcEEEEc-CCC--CC---CcccHHHHHH
Q 022463 92 YQTDTKKISAVSIFFETMPYRL--NE-----STGYIDYDQLEKSATLF---RPKLIVAG-ASA--YA---RLYDYERIRK 155 (297)
Q Consensus 92 ~~~~~~~~~~~g~~~~~v~~~~--~~-----~~~~~d~~~l~~~l~~~---~~~~v~~~-~~~--~G---~~~~~~~i~~ 155 (297)
....+.... -++++- |. --+.+|++.|++.|++- +...|++. .+| -| ...+++++.+
T Consensus 141 --~~~ng~~~~-----n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ 213 (471)
T COG3033 141 --IQINGATPR-----NVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYE 213 (471)
T ss_pred --HHhcCCccc-----cccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHH
Confidence 111222211 111111 10 12689999999999862 34455553 333 24 4567889999
Q ss_pred HHHhcCCEEEEehhhhcccccc------cCCCCC--------CCCccEEEecCCccCCCCCceEEEEecCchhhccCCcc
Q 022463 156 VCNKQKAIMLADMAHISGLVAA------GVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE 221 (297)
Q Consensus 156 la~~~g~~livD~a~~~g~~~~------~~~~~~--------~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~ 221 (297)
||++|+++++.|++..+.--.+ +...|+ ++++|.++.|.-|--..+.||++.++++
T Consensus 214 ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~---------- 283 (471)
T COG3033 214 IAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDD---------- 283 (471)
T ss_pred HHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccccEEEecCc----------
Confidence 9999999999999876543322 223333 3379999999999777889999999986
Q ss_pred chhhHHHH---hhh--cccCCC--CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHH
Q 022463 222 VFYDYEEK---INQ--AVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAF 277 (297)
Q Consensus 222 ~~~~~~~~---~~~--~~~~~~--~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l 277 (297)
.+.+. +.. ....+. .|+...-.+.+++.+|..-.+..-+++..++++.|.+.|
T Consensus 284 ---~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l 343 (471)
T COG3033 284 ---SFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGL 343 (471)
T ss_pred ---cHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 22221 111 111121 456666788888899988776633444444444444433
No 329
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.12 E-value=1e-08 Score=94.84 Aligned_cols=219 Identities=12% Similarity=0.089 Sum_probs=116.1
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccc-cccccccccceeeeeeEee-ecc
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSH-GYQTDTKKISAVSIFFETM-PYR 112 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~v-~~~ 112 (297)
++|.++++...+. ..+.+||+.++..+++.. .....+|+.....|++.... ...+...+-..... .... +-+
T Consensus 100 ~~L~~~~~~~~~~---v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~-~~~~~~~~ 175 (433)
T PRK00615 100 EELFSYLGLEDHK---IRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTL-THLVDTDL 175 (433)
T ss_pred HHHHHhCCCCcCE---EEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcC-CCCCCCCC
Confidence 5566666543222 355578888888776644 22345677766665554311 11000000000000 0000 000
Q ss_pred cCCCC---CcCCHHHHHHHhhhc--CCcEEEE-c-CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhcccccccC--
Q 022463 113 LNEST---GYIDYDQLEKSATLF--RPKLIVA-G-ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-- 179 (297)
Q Consensus 113 ~~~~~---~~~d~~~l~~~l~~~--~~~~v~~-~-~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~~-- 179 (297)
..+.. ..-|++.+++.+.+. ++.+|++ . .++-|...| +++|.++|++||+++|+|++|. |. -.+.
T Consensus 176 ~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~-R~G~~g 253 (433)
T PRK00615 176 AHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GF-RVAQGG 253 (433)
T ss_pred CCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cc-cccHhH
Confidence 00000 012788899888642 3556666 3 334566555 4599999999999999999994 54 1110
Q ss_pred -CCCCCC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC--CchHHHHHHHHHH
Q 022463 180 -IPSPFE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG--PHNHTITGLAVAL 254 (297)
Q Consensus 180 -~~~~~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~al~~al 254 (297)
... +. .+|+++++ |.|++. ++|+++++++ +.+.+.........+| .+...+++..++|
T Consensus 254 a~~~-~gv~PDi~~~g--K~lggG~p~~av~~~~~--------------i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L 316 (433)
T PRK00615 254 AAAI-YHVKPDITVYG--KILGGGLPAAAVVAHKS--------------IMDHLAPEGTIFQAGTLSGNPLAMAAGKASI 316 (433)
T ss_pred HHHh-cCCCCCeEEEc--ccccCCcceeeeeecHH--------------HHhhhcCCCCcccCCCCcccHHHHHHHHHHH
Confidence 000 01 46888764 999753 4688888873 4444432111111223 3567788888889
Q ss_pred HHHhhhcChhhHHHHhhhhHHHHHhhcc
Q 022463 255 KQVCTLITFSHIHVFSLHVYPAFVSNQN 282 (297)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~l~~~l~~~l~ 282 (297)
+.+.+. . ++++..++.++|.++|+
T Consensus 317 ~~i~~~-~---~~~~~~~~g~~l~~~l~ 340 (433)
T PRK00615 317 NLCREQ-G---FYTQLSTLEQNFLSPIE 340 (433)
T ss_pred HHHhcc-c---HHHHHHHHHHHHHHHHH
Confidence 888755 2 34445555555544443
No 330
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=99.11 E-value=3.1e-09 Score=94.44 Aligned_cols=226 Identities=13% Similarity=0.107 Sum_probs=140.0
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHh-cC--CCCeEEEecCCCCCcccccccccccccceeeeeeEeee
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTAL-LK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 110 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~-~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 110 (297)
-|..+++++|.+..+ -..-.++ .+..+++++. .. +.++++++...|+.+.+-..- ...+..++.+.
T Consensus 125 fQtlv~dLTGm~VAN----ASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~T------ra~~~g~~i~~ 194 (450)
T COG0403 125 FQTLVADLTGLDVAN----ASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRT------RAEGLGIEIEV 194 (450)
T ss_pred HHHHHHHHhCCCccc----chhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHh------hcccCceEEEE
Confidence 458889999998643 3343444 3444444443 22 368999999888887654421 11222233333
Q ss_pred cccCCCCCcCCHHHHHHHhhhcCCcEEEEc-CCCCC-CcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC-Cc
Q 022463 111 YRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYA-RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YA 187 (297)
Q Consensus 111 ~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~-~~~~G-~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~-~~ 187 (297)
++++ |.+++++. .+..+..+++- |..+| ...++++|.+.+|++|+++++= +..+.+.+...|.. |+
T Consensus 195 ~~~~------d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~----aDplaL~LL~pPGe~GA 263 (450)
T COG0403 195 VDAD------DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVA----ADPLALGLLKPPGEFGA 263 (450)
T ss_pred eccc------hhhhhhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEE----echhHhhccCCccccCC
Confidence 2332 77888887 44367888884 55588 7778999999999999988873 23334444444444 89
Q ss_pred cEEEecCCc-----cCCCCCceEEEEecCch--hh-c-------cCCccchhhHHHH----hhhcccCCCCCCCchH-HH
Q 022463 188 DVVTTTTHK-----SLRGPRGAMIFFRKGVK--EI-N-------KQGKEVFYDYEEK----INQAVFPGLQGGPHNH-TI 247 (297)
Q Consensus 188 D~~~~s~~K-----~l~gp~gG~i~~~~~~~--~~-~-------~~g~~~~~~~~~~----~~~~~~~~~~~t~~~~-~~ 247 (297)
|+++++++- +++||.-|++.++++.. +. . ..|+. .|... -++.+.....++.+.. .+
T Consensus 264 DIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~---A~rLaLQTREQHIRReKATSNICTnQaL 340 (450)
T COG0403 264 DIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKR---AFRLALQTREQHIRREKATSNICTNQAL 340 (450)
T ss_pred ceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCc---hhhhhHHHHHHHHhhhccchhhhHHHHH
Confidence 999999986 57778889999999862 11 1 11222 12111 1222222223333322 12
Q ss_pred HHH--HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCC
Q 022463 248 TGL--AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 248 ~al--~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 285 (297)
.|+ ....-++... |+.++-++...++.++.++|++..
T Consensus 341 lA~~As~y~~~hGp~-GLk~iA~r~~~~a~~la~~L~~~~ 379 (450)
T COG0403 341 LALAASMYAVYHGPQ-GLKEIAERIHRLAAYLAAGLKEIG 379 (450)
T ss_pred HHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 222 2233355556 999999999999999999999766
No 331
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.11 E-value=1.9e-08 Score=93.61 Aligned_cols=142 Identities=14% Similarity=0.105 Sum_probs=84.3
Q ss_pred CCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhh-cccccc----cCCCCCCCCccEEEecCCccCCCC
Q 022463 133 RPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA----GVIPSPFEYADVVTTTTHKSLRGP 201 (297)
Q Consensus 133 ~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~~----~~~~~~~~~~D~~~~s~~K~l~gp 201 (297)
++.+|++. ..+-|...| +++|.++|++||+++|+|++|. .|-... ..... .+|+++++ |.+++.
T Consensus 207 ~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv---~pDi~t~g--K~l~~G 281 (445)
T PRK08593 207 EVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI---TPDLMSFG--KSLAGG 281 (445)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCC---CCCEeeec--ccccCC
Confidence 56677773 223455555 8899999999999999999974 322111 00111 46877765 988753
Q ss_pred -CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhh
Q 022463 202 -RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSN 280 (297)
Q Consensus 202 -~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~ 280 (297)
+.|++++++ ++.+.+..... ..+.+.+...+++..++|+.+.++.-++++.+....+.+.|.+-
T Consensus 282 ~p~gav~~~~--------------~i~~~~~~~~~-~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l 346 (445)
T PRK08593 282 MPMSAIVGRK--------------EIMESLEAPAH-LFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQW 346 (445)
T ss_pred cccEEEEEcH--------------HHHhhhccCCC-CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 347888887 34444432111 11223455777888888988876522344444444444444443
Q ss_pred ccCCCCcccccCCC
Q 022463 281 QNNSENIEEDKGRP 294 (297)
Q Consensus 281 l~~~~~~~~~~g~~ 294 (297)
.++.+.+.+++|.-
T Consensus 347 ~~~~~~v~~vrG~G 360 (445)
T PRK08593 347 VSKYNFVGDVRGYG 360 (445)
T ss_pred HhcCCcEEEEeccc
Confidence 34466677777763
No 332
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.11 E-value=6.8e-09 Score=96.00 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=121.7
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc-------CCCCeEEEecCCCCCcc-cccccccc-----c--ccce
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL-------KPHDRIMALDLPHGGHL-SHGYQTDT-----K--KISA 101 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~-------~~gd~Vl~~~~~~~~~~-~~~~~~~~-----~--~~~~ 101 (297)
++|++++..+.+. ..+.+||+.++..+++... ....+|+.....|++.. ........ . ....
T Consensus 93 ~~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~ 169 (428)
T PRK07986 93 RKLVAMTPQPLEC---VFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYL 169 (428)
T ss_pred HHHHhhCCCCcCE---EEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCC
Confidence 5555555432222 3445788888887666432 23467888777755532 11111000 0 0000
Q ss_pred eeeeeEeeecccCCCC---CcCCHHHHHHHhhhc--CCcEEEEcC--CCC-CCc----ccHHHHHHHHHhcCCEEEEehh
Q 022463 102 VSIFFETMPYRLNEST---GYIDYDQLEKSATLF--RPKLIVAGA--SAY-ARL----YDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~---~~~d~~~l~~~l~~~--~~~~v~~~~--~~~-G~~----~~~~~i~~la~~~g~~livD~a 169 (297)
.+ +..++.+..... ..-|++++++.+... +..+|++-+ +.. |.. ..+++|.++|++||+++|+|++
T Consensus 170 ~~--~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv 247 (428)
T PRK07986 170 PE--NLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEI 247 (428)
T ss_pred CC--CEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 11 111222211000 023667888888642 345666633 333 432 3388999999999999999999
Q ss_pred hhccccccc-CCCC-CCC-CccEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcc----cCCCCC
Q 022463 170 HISGLVAAG-VIPS-PFE-YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV----FPGLQG 240 (297)
Q Consensus 170 ~~~g~~~~~-~~~~-~~~-~~D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~ 240 (297)
| .|.-..+ .... -+. .+|+++++ |.|+|. +.|+++++++ +.+.+.... .-+.+.
T Consensus 248 ~-tG~GrtG~~fa~~~~gv~PDi~t~g--K~l~gG~~p~~av~~~~~--------------i~~~~~~~~~~~~~~~~T~ 310 (428)
T PRK07986 248 A-TGFGRTGKLFACEHAGIAPDILCLG--KALTGGTMTLSATLTTRE--------------VAETISNGEAGCFMHGPTF 310 (428)
T ss_pred c-cCCccCCCeeeecccCCCCCEEEec--hhhhCCcccCcchhchHH--------------HHHHhhcCCCCccccCCCC
Confidence 8 5441111 1000 011 46888764 998653 2356666663 444443211 011122
Q ss_pred CCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC---CCCcccccCC
Q 022463 241 GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN---SENIEEDKGR 293 (297)
Q Consensus 241 t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~g~ 293 (297)
+.+...+++..++|+.+.+. + +.++.+++.++|.+.|++ .+.|.+++|+
T Consensus 311 ~g~p~~~aaa~a~L~~i~~~-~---~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~ 362 (428)
T PRK07986 311 MGNPLACAVANASLSLLESG-D---WQQQVAAIEAQLREELAPLRDAPMVADVRVL 362 (428)
T ss_pred CcCHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHHhcCCCEEeEecc
Confidence 34567888888889988765 3 345555555555555544 4567777775
No 333
>PRK07482 hypothetical protein; Provisional
Probab=99.10 E-value=1.5e-08 Score=94.66 Aligned_cols=155 Identities=13% Similarity=0.032 Sum_probs=96.8
Q ss_pred CHHHHHHHhhh---cCCcEEEEcCC--CCCCcc----cHHHHHHHHHhcCCEEEEehhhhc-cccc----ccCCCCCCCC
Q 022463 121 DYDQLEKSATL---FRPKLIVAGAS--AYARLY----DYERIRKVCNKQKAIMLADMAHIS-GLVA----AGVIPSPFEY 186 (297)
Q Consensus 121 d~~~l~~~l~~---~~~~~v~~~~~--~~G~~~----~~~~i~~la~~~g~~livD~a~~~-g~~~----~~~~~~~~~~ 186 (297)
+++.+++.+.. .++.+|++-|. +-|... -+++|+++|++||+++|+|+.++. |-.. ...... .
T Consensus 205 ~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv---~ 281 (461)
T PRK07482 205 CADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGI---E 281 (461)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCC---C
Confidence 46778887752 24567777322 234332 367999999999999999999752 2111 111111 5
Q ss_pred ccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcc------cCCCCCCCchHHHHHHHHHHHHHh
Q 022463 187 ADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAV------FPGLQGGPHNHTITGLAVALKQVC 258 (297)
Q Consensus 187 ~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~t~~~~~~~al~~al~~~~ 258 (297)
+|+++++ |.|+|.. -|+++++++ +.+.+.... .-+.+.+.+...+++..++|+.+.
T Consensus 282 PDiv~~g--Kgl~gG~~Pi~av~~~~~--------------i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~ 345 (461)
T PRK07482 282 PDLITVA--KGLTSAYAPLSGSIVGEK--------------VWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILE 345 (461)
T ss_pred CCEEEEc--cccccCccccceeeecHH--------------HHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHH
Confidence 7999987 9997642 266666663 333332110 011122346678888889999998
Q ss_pred hhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 259 TLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 259 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
++.-++++.+....+.+.|.+.+++.+.+.+++|+-
T Consensus 346 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~G 381 (461)
T PRK07482 346 RENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVG 381 (461)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeece
Confidence 773346666666666666666566778888888864
No 334
>PRK06149 hypothetical protein; Provisional
Probab=99.10 E-value=2.9e-08 Score=100.59 Aligned_cols=145 Identities=10% Similarity=0.041 Sum_probs=85.3
Q ss_pred CCcEEEE-c-CCCCCCccc----HHHHHHHHHhcCCEEEEehhhh-cccccccCCCCC-CC-CccEEEecCCccCCCCCc
Q 022463 133 RPKLIVA-G-ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSP-FE-YADVVTTTTHKSLRGPRG 203 (297)
Q Consensus 133 ~~~~v~~-~-~~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~~~~~~~~-~~-~~D~~~~s~~K~l~gp~g 203 (297)
++.+|++ . .++-|...| +++|.++|++||+++|+|++|. .|-....+.... +. .+|+++++ |.|++..-
T Consensus 744 ~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~g--K~lg~G~P 821 (972)
T PRK06149 744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMA--KGMGNGHP 821 (972)
T ss_pred ceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEec--ccccCCee
Confidence 4556666 3 334566666 8899999999999999999983 433221110000 01 47988776 99976433
Q ss_pred -eEEEEecCchhhccCCccchhhHHHHhhh-cccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhc
Q 022463 204 -AMIFFRKGVKEINKQGKEVFYDYEEKINQ-AVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQ 281 (297)
Q Consensus 204 -G~i~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l 281 (297)
|+++++++ +.+.+.. ..+.. +.+.+...+++..++|+.+.++.-++++++....+.+.|.+..
T Consensus 822 l~av~~~~~--------------i~~~~~~~~~~~s-T~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~ 886 (972)
T PRK06149 822 LGAVITRRE--------------IAEALEAEGYFFS-STGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALA 886 (972)
T ss_pred eEEEEEcHH--------------HHhhhccCCcccC-CCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 88888874 4443432 11111 1234567778888889988766113334343344444444433
Q ss_pred cCCCCcccccCCC
Q 022463 282 NNSENIEEDKGRP 294 (297)
Q Consensus 282 ~~~~~~~~~~g~~ 294 (297)
++.+.|.+++|.-
T Consensus 887 ~~~~~i~~vrG~G 899 (972)
T PRK06149 887 DRHPLIGAVHGMG 899 (972)
T ss_pred HhCCCeEEEeecc
Confidence 4456677777753
No 335
>PRK07480 putative aminotransferase; Validated
Probab=99.09 E-value=1.6e-08 Score=94.36 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=92.0
Q ss_pred HHHHHHhhh---cCCcEEEEcC--CCCCCccc----HHHHHHHHHhcCCEEEEehhhh-ccccccc-CCCCCCC-CccEE
Q 022463 123 DQLEKSATL---FRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG-VIPSPFE-YADVV 190 (297)
Q Consensus 123 ~~l~~~l~~---~~~~~v~~~~--~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~~~-~~~~~~~-~~D~~ 190 (297)
+.+++.+.+ .++.+|++-+ .+-|...| +++++++|++||+++|+|++++ .|-.... .... +. .+|++
T Consensus 206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~-~gv~PDiv 284 (456)
T PRK07480 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQH-FGIKPDLM 284 (456)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhh-cCCCCCee
Confidence 566655532 2456777732 22455544 7899999999999999999985 2221110 0000 01 47988
Q ss_pred EecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhh--hccc-CCCCCCCchHHHHHHHHHHHHHhhhcChhh
Q 022463 191 TTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKIN--QAVF-PGLQGGPHNHTITGLAVALKQVCTLITFSH 265 (297)
Q Consensus 191 ~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~~~~~t~~~~~~~al~~al~~~~~~~g~~~ 265 (297)
+++ |.++|.. -|.++++++ +.+.+. ...+ .+.+.+-+...+++..++|+.+.++.-+++
T Consensus 285 ~~g--K~l~gG~~Pi~av~~~~~--------------i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 348 (456)
T PRK07480 285 TIA--KGLTSGYIPMGAVGVGDR--------------VAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVER 348 (456)
T ss_pred eee--hhhccCCccceEEEEcHH--------------HHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 886 9987742 366666663 344331 1111 111223456888888999999987622355
Q ss_pred H-HHHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 266 I-HVFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 266 ~-~~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
+ .+....+.+.+.+ +++.+.+.+++|.-
T Consensus 349 ~~~~~g~~l~~~l~~-l~~~~~i~~vrG~G 377 (456)
T PRK07480 349 VRDDTGPYLQKRLRE-LADHPLVGEVRGVG 377 (456)
T ss_pred HHHHHHHHHHHHHHH-hhcCCCeeeEEeec
Confidence 5 3555666666665 55667777888764
No 336
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.09 E-value=2.1e-08 Score=93.28 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=84.2
Q ss_pred CCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhcccccccC-CC-CCCC-CccEEEecCCccCCCCCc
Q 022463 133 RPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-IP-SPFE-YADVVTTTTHKSLRGPRG 203 (297)
Q Consensus 133 ~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~D~~~~s~~K~l~gp~g 203 (297)
++.+|++- .++-|...| +++|.++|++||+++|+|++|+ |.-..+. .. ..+. ..|++++| |.+++...
T Consensus 221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G~gr~G~~~a~~~~gv~pDivt~~--K~l~~G~p 297 (441)
T PRK05769 221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-GMGRTGKMFAIEHFGVEPDIITLA--KAIAGGLP 297 (441)
T ss_pred ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccceehhhccCCCCCEEEEc--ccccCCcc
Confidence 45666663 333567777 8999999999999999999987 3322221 00 0011 46888765 98876433
Q ss_pred -eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhcc
Q 022463 204 -AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQN 282 (297)
Q Consensus 204 -G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~ 282 (297)
|+++++++ +.+... ....... +.+...+++..++|+.+.+ .-++++++....+.+.|.+..+
T Consensus 298 ~gav~~~~~--------------i~~~~~-~~~~~T~-~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~ 360 (441)
T PRK05769 298 LGAVIGRAE--------------LMFLPP-GSHANTF-GGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKE 360 (441)
T ss_pred cEEEEEehh--------------hhhcCC-CCCCCCC-CcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 77887774 222111 1111111 2255667777888888865 2445555555555555544444
Q ss_pred CCCCcccccCCC
Q 022463 283 NSENIEEDKGRP 294 (297)
Q Consensus 283 ~~~~~~~~~g~~ 294 (297)
+.+.+.+++|+.
T Consensus 361 ~~~~~~~vrg~G 372 (441)
T PRK05769 361 KYEFIGDVRGLG 372 (441)
T ss_pred hCCCeeeeecce
Confidence 456677777764
No 337
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.09 E-value=4.5e-08 Score=91.11 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=91.5
Q ss_pred HHHHHHHhhh---cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhh-ccccccc--CCCCCCCCccE
Q 022463 122 YDQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADV 189 (297)
Q Consensus 122 ~~~l~~~l~~---~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~~~--~~~~~~~~~D~ 189 (297)
++++++.+.. .++.+|++- .++.|...| +++|.++|++||+++|+|++|+ .|-.... ..... -.+|+
T Consensus 204 ~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~g-v~PDi 282 (445)
T PRK09221 204 ADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFG-VTPDI 282 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcC-CCCCE
Confidence 3567777753 245677773 333577777 8999999999999999999985 2211110 01100 04588
Q ss_pred EEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhc------ccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 190 VTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 190 ~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
++++ |.|++. +.|.++.+++ ..+.+... ...+.+.+.+...+++..++|+.+.++
T Consensus 283 ~~~g--K~l~gG~~Pi~av~~~~~--------------i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~- 345 (445)
T PRK09221 283 ITFA--KGLTNGAIPMGAVIASDE--------------IYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE- 345 (445)
T ss_pred EEec--cccccCcccceeeEEcHH--------------HHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc-
Confidence 8777 888653 3466777763 33322211 011111223456677777889888765
Q ss_pred ChhhHHHHhhhhHHHHHhhccCC---CCcccccCCC
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNNS---ENIEEDKGRP 294 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~g~~ 294 (297)
+ +.++.+++.++|++.|+++ +.+.+++|..
T Consensus 346 ~---l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~G 378 (445)
T PRK09221 346 D---LFERAAELAPYFEDAVHSLKGLPHVIDIRNIG 378 (445)
T ss_pred c---HHHHHHHHHHHHHHHHHhhccCCCEEEEecCc
Confidence 3 4566677777777766554 5567777764
No 338
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.09 E-value=1.5e-08 Score=93.97 Aligned_cols=203 Identities=10% Similarity=0.043 Sum_probs=111.4
Q ss_pred EEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccc-ccccc-----ceeeee----eEeeecccCCCCCcCC
Q 022463 54 VQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-DTKKI-----SAVSIF----FETMPYRLNESTGYID 121 (297)
Q Consensus 54 v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~-~~~~~-----~~~g~~----~~~v~~~~~~~~~~~d 121 (297)
.+.+||+.++..+++.. .....+|+.....|++........ ..... ...+.. ...+.++ ..|
T Consensus 113 ~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d 186 (428)
T PRK12389 113 RFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP------FND 186 (428)
T ss_pred EEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcC------CCC
Confidence 45578888888776643 234567887776655543211110 00000 000000 0011111 127
Q ss_pred HHHHHHHhhhc--CCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhccccccc-CCCCCCC-CccEEE
Q 022463 122 YDQLEKSATLF--RPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFE-YADVVT 191 (297)
Q Consensus 122 ~~~l~~~l~~~--~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~~~~-~~D~~~ 191 (297)
++.+++.+.++ ++.+|++. .++.|...| +++|.++|++||+++|+|++|+..-.... .... +. .+|+++
T Consensus 187 ~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~-~gv~PDivt 265 (428)
T PRK12389 187 IEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDL-LGVEPDLTA 265 (428)
T ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHH-hCCCCCeee
Confidence 88999888642 45566663 333566666 89999999999999999999864211100 0000 01 479887
Q ss_pred ecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcc--cCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHH
Q 022463 192 TTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAV--FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHV 268 (297)
Q Consensus 192 ~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~ 268 (297)
++ |.++|..- |.+++++ ++.+.+.... .-+.+.+.+...+++..++|+.+.++ + +.+
T Consensus 266 ~g--K~lggG~Pi~av~~~~--------------~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~-~---l~~ 325 (428)
T PRK12389 266 LG--KIIGGGLPIGAYGGRK--------------DIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE-G---VYE 325 (428)
T ss_pred ec--hhhcCCCceeEEeEHH--------------HHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc-c---HHH
Confidence 76 99876322 5567776 3444332110 11112234557788888889888765 3 455
Q ss_pred HhhhhHHHHHhhccC
Q 022463 269 FSLHVYPAFVSNQNN 283 (297)
Q Consensus 269 ~~~~l~~~l~~~l~~ 283 (297)
+.+++.++|.++|++
T Consensus 326 ~~~~~g~~l~~~L~~ 340 (428)
T PRK12389 326 KLDRLGAMLEEGILE 340 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555566666665554
No 339
>PRK05965 hypothetical protein; Provisional
Probab=99.08 E-value=1.7e-08 Score=94.24 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=90.8
Q ss_pred HHHHHHhhh---cCCcEEEEcCC--CCCCcc----cHHHHHHHHHhcCCEEEEehhhhc-cccc----ccCCCCCCCCcc
Q 022463 123 DQLEKSATL---FRPKLIVAGAS--AYARLY----DYERIRKVCNKQKAIMLADMAHIS-GLVA----AGVIPSPFEYAD 188 (297)
Q Consensus 123 ~~l~~~l~~---~~~~~v~~~~~--~~G~~~----~~~~i~~la~~~g~~livD~a~~~-g~~~----~~~~~~~~~~~D 188 (297)
+.+++.+.. .++.+|++-+. +-|... -+++++++|++||+++|.|+.++. |-.. ...... .+|
T Consensus 202 ~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv---~PD 278 (459)
T PRK05965 202 AALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV---VPD 278 (459)
T ss_pred HHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC---CCC
Confidence 567777763 24567777322 234332 367999999999999999999752 2111 010111 479
Q ss_pred EEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhc------ccCCCCCCCchHHHHHHHHHHHHHhhh
Q 022463 189 VVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTL 260 (297)
Q Consensus 189 ~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~t~~~~~~~al~~al~~~~~~ 260 (297)
+++++ |.|+|.. -|.++++++ +.+.+... ...+.+.+.+...+++..++|+.+.++
T Consensus 279 iv~~g--Kgl~gG~~Pi~av~~~~~--------------i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~ 342 (459)
T PRK05965 279 LMTVA--KGLTSGYVPMGAVLMSDH--------------VYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEG 342 (459)
T ss_pred eEEec--hhhccCCcceeEEEEcHH--------------HHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99987 9987753 377777774 33333211 011112234567788888889988776
Q ss_pred cChhhHHHHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 261 ITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 261 ~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
.-++++.+....+.+.+.+ +.+.+.|.+++|+-
T Consensus 343 ~l~~~~~~~g~~l~~~l~~-l~~~~~v~~vrG~G 375 (459)
T PRK05965 343 GLLANGQKAGPRFAAGLDA-LRAHPLVGDVRGRG 375 (459)
T ss_pred cHHHHHHHHHHHHHHHHHh-hccCCCEEEEeecc
Confidence 2345555555555544443 34466677788764
No 340
>PRK06541 hypothetical protein; Provisional
Probab=99.08 E-value=2.5e-08 Score=93.19 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=87.3
Q ss_pred HHHHHHHhhh---cCCcEEEEcC-CC-CCCccc----HHHHHHHHHhcCCEEEEehhh-hcccccccCCCCCCC-CccEE
Q 022463 122 YDQLEKSATL---FRPKLIVAGA-SA-YARLYD----YERIRKVCNKQKAIMLADMAH-ISGLVAAGVIPSPFE-YADVV 190 (297)
Q Consensus 122 ~~~l~~~l~~---~~~~~v~~~~-~~-~G~~~~----~~~i~~la~~~g~~livD~a~-~~g~~~~~~~~~~~~-~~D~~ 190 (297)
++.+++.+.. .++.+|++.+ .+ .|...| +++|.++|++||+++|+|++| ..|-.....-..-+. .+|++
T Consensus 207 ~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDiv 286 (460)
T PRK06541 207 ADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDII 286 (460)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEE
Confidence 3677777763 1345555533 23 566666 889999999999999999998 444222110000001 46988
Q ss_pred EecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCC---CCCCCchHHHHHHHHHHHHHhhhcChhh
Q 022463 191 TTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG---LQGGPHNHTITGLAVALKQVCTLITFSH 265 (297)
Q Consensus 191 ~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~t~~~~~~~al~~al~~~~~~~g~~~ 265 (297)
+++ |.|++.. -|+++++++ ..+.+....... .+.+.+...+++..++|+.+.+. +
T Consensus 287 t~g--K~l~~G~~pigav~~~~~--------------i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~-~--- 346 (460)
T PRK06541 287 TCA--KGITSGYSPLGAMIASDR--------------LFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFERE-G--- 346 (460)
T ss_pred Eec--ccccCCccceeEEEEcHH--------------HHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc-c---
Confidence 765 9987632 366666663 333332211111 12233456677777888887655 3
Q ss_pred HHHHhhhhHHHHHhhccCC---CCcccccCC
Q 022463 266 IHVFSLHVYPAFVSNQNNS---ENIEEDKGR 293 (297)
Q Consensus 266 ~~~~~~~l~~~l~~~l~~~---~~~~~~~g~ 293 (297)
+.++.+++.++|.++|+++ +.+.+++|.
T Consensus 347 ~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~ 377 (460)
T PRK06541 347 LLDHVRDNEPAFRATLEKLLDLPIVGDVRGD 377 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 3455555666666666554 445556554
No 341
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.07 E-value=1.1e-08 Score=94.56 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=88.4
Q ss_pred HHHHHHhhhcCCcEEEEcC--CC-CCC----cccHHHHHHHHHhcCCEEEEehhhhccccccc-CCCCC-CC-CccEEEe
Q 022463 123 DQLEKSATLFRPKLIVAGA--SA-YAR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSP-FE-YADVVTT 192 (297)
Q Consensus 123 ~~l~~~l~~~~~~~v~~~~--~~-~G~----~~~~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~~-~~-~~D~~~~ 192 (297)
+.+++.+.+ ++.+|++.+ .. .|. ...++++.++|++||+++|+|++| .|.-..+ ..... +. .+|++++
T Consensus 191 ~~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDi~t~ 268 (422)
T PRK05630 191 RSLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA-TGFGRTGELFATLAAGVTPDIMCV 268 (422)
T ss_pred HHHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce-eCCCcCchhhHHHhcCCCCCeeee
Confidence 345555554 777888744 22 343 335779999999999999999998 3331111 10000 01 4688877
Q ss_pred cCCccCCC--CCceEEEEecCchhhccCCccchhhHHHHhhhcc-----cCCCCCCCchHHHHHHHHHHHHHhhhcChhh
Q 022463 193 TTHKSLRG--PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-----FPGLQGGPHNHTITGLAVALKQVCTLITFSH 265 (297)
Q Consensus 193 s~~K~l~g--p~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~t~~~~~~~al~~al~~~~~~~g~~~ 265 (297)
+ |.|+| ++.|+++++++ ..+.+.... .-+.+.+.+...+++..++|+.+.+. .
T Consensus 269 g--K~l~gG~~p~~av~~~~~--------------i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~-~--- 328 (422)
T PRK05630 269 G--KALTGGFMSFAATLCTDK--------------VAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETG-M--- 328 (422)
T ss_pred e--chhhcCccccceeeccHH--------------HHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhC-c---
Confidence 5 99965 56688888874 333332110 11112234567788888889998765 3
Q ss_pred HHHHhhhhHHHHHhhc---cCCCCcccccCC
Q 022463 266 IHVFSLHVYPAFVSNQ---NNSENIEEDKGR 293 (297)
Q Consensus 266 ~~~~~~~l~~~l~~~l---~~~~~~~~~~g~ 293 (297)
..++.+++.++|.+.| .+.+.|.+++|+
T Consensus 329 ~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~ 359 (422)
T PRK05630 329 WRKQVKRIEAELIAGLSPLAHLPGVADVRVL 359 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeeecc
Confidence 2334444455555444 445667777776
No 342
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.06 E-value=1.4e-08 Score=94.07 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=85.1
Q ss_pred HHHHHHHhhh----cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhccccccc-CCCC-CCC-Ccc
Q 022463 122 YDQLEKSATL----FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS-PFE-YAD 188 (297)
Q Consensus 122 ~~~l~~~l~~----~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~-~~~-~~D 188 (297)
++.+++.+.+ .+..+|++. .++-|...+ +++|.++|++||+++|+|++++. ....+ .... ... ..|
T Consensus 184 ~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g-~g~~g~~~~~~~~~~~pd 262 (425)
T PRK08088 184 IASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTG-AGRTGTLFAMEQMGVAAD 262 (425)
T ss_pred HHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC-CCcCcchhHHhhcCCCCC
Confidence 5568888752 245677773 222344444 78999999999999999999772 21111 1000 000 356
Q ss_pred EEEecCCccCCCCC-ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHH
Q 022463 189 VVTTTTHKSLRGPR-GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIH 267 (297)
Q Consensus 189 ~~~~s~~K~l~gp~-gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~ 267 (297)
+. |++|.+++.- -|+++.++ ++.+.+....... ..+.+.+..+++.+.|+.+....-+++++
T Consensus 263 i~--s~sK~l~~G~rig~v~~~~--------------~~~~~~~~~~~~~-t~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 325 (425)
T PRK08088 263 LT--TFAKSIAGGFPLAGVTGRA--------------EVMDAIAPGGLGG-TYAGNPIACAAALAVLKVFEQENLLQKAN 325 (425)
T ss_pred EE--EEeccccCCCcceeeEecH--------------HHHhhcCCCCCCC-CCCcCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 54 4569986422 28888877 3444443322211 22345566777777777765442344444
Q ss_pred HHhhhhHHHHHhhccCCCCcccccC
Q 022463 268 VFSLHVYPAFVSNQNNSENIEEDKG 292 (297)
Q Consensus 268 ~~~~~l~~~l~~~l~~~~~~~~~~g 292 (297)
+....+.+.+.+.+...+.+..++|
T Consensus 326 ~~~~~~~~~l~~l~~~~~~~~~v~g 350 (425)
T PRK08088 326 ALGEKLKDGLLAIAEKHPEIGDVRG 350 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEec
Confidence 4444444444443344555544444
No 343
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.06 E-value=2.7e-08 Score=92.95 Aligned_cols=217 Identities=13% Similarity=0.055 Sum_probs=116.4
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccccccc------cceeeeee--
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKK------ISAVSIFF-- 106 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~------~~~~g~~~-- 106 (297)
+++.+.+.. .+. ..+.+||+.++..+++.. ....++|+.....|++...........+ ....+...
T Consensus 146 e~l~~~~p~-~~~---v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 221 (474)
T PLN02482 146 EMVIDAVPS-VEM---VRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAA 221 (474)
T ss_pred HHHHHhCCC-CCE---EEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCC
Confidence 555555532 222 245578888887766644 2344677777766666432111000000 00000000
Q ss_pred --EeeecccCCCCCcCCHHHHHHHhhhc--CCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhccccc
Q 022463 107 --ETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVA 176 (297)
Q Consensus 107 --~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~ 176 (297)
..+.++. -|++.+++.+..+ ++.+|++. .++.|...| ++++.++|++||+++|+|++| .|...
T Consensus 222 ~~~~~~~~~------nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~-tGfR~ 294 (474)
T PLN02482 222 TSATLTAPY------NDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVM-TGFRI 294 (474)
T ss_pred CCCeEEecC------CChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCeec
Confidence 0011111 2788999888642 35566663 344565555 558999999999999999998 45422
Q ss_pred ccCCCC-CCC-CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCC--CchHHHHHHH
Q 022463 177 AGVIPS-PFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG--PHNHTITGLA 251 (297)
Q Consensus 177 ~~~~~~-~~~-~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~al~ 251 (297)
...... -+. .+|+++++ |.|+|..- |.++.++ ++.+.+.........+| .+...+++..
T Consensus 295 g~~ga~~~~gv~PDi~t~g--K~lggG~Pigav~g~~--------------ei~~~~~~~~~~~~~~T~~gnpl~~aAal 358 (474)
T PLN02482 295 AYGGAQEYFGITPDLTTLG--KVIGGGLPVGAYGGRR--------------EIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358 (474)
T ss_pred CcchHhHHhCCCCCEEEec--chhhCCCceEEEEEcH--------------HHHHhhccCCCcccccCcchhHHHHHHHH
Confidence 111000 011 46887775 99976322 5557776 34444432110111233 3556677777
Q ss_pred HHHHHHhhhcChhhHHHHhhhhHHHHHhhccCC
Q 022463 252 VALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 284 (297)
Q Consensus 252 ~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 284 (297)
++|+.+.+. .+.++..++.++|.++|+++
T Consensus 359 a~L~~l~~~----~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 359 HTLKRLQQP----GTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred HHHHHHhcc----CHHHHHHHHHHHHHHHHHHH
Confidence 888888654 35556666666666666543
No 344
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.06 E-value=1.9e-08 Score=91.58 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=91.5
Q ss_pred CHHHHHHHhhhcC---CcEEEEcCC--C-CCCcc----cHHHHHHHHHhcCCEEEEehhhhccccccc-CCCCC-CC-Cc
Q 022463 121 DYDQLEKSATLFR---PKLIVAGAS--A-YARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSP-FE-YA 187 (297)
Q Consensus 121 d~~~l~~~l~~~~---~~~v~~~~~--~-~G~~~----~~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~~-~~-~~ 187 (297)
..++|++.|..+. ..++++-|- . -|... -+++++++|++||+++|.|+.- .|+--.+ +.... +. ..
T Consensus 199 ~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~-tGFGRTG~~FA~e~~gi~P 277 (449)
T COG0161 199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVA-TGFGRTGKMFACEHAGIVP 277 (449)
T ss_pred HHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecce-eCCCcCchhhhhhhcCCCC
Confidence 3567888887644 345555222 2 34333 3779999999999999999973 3321111 00000 00 46
Q ss_pred cEEEecCCccCCCCCc--eEEEEecCchhhccCCccchhhHHHHhhhc----ccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 188 DVVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQA----VFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 188 D~~~~s~~K~l~gp~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
|++|.+ |.|.+..- |.++++++ ..+.+... .+-+.+.+-+....++..+.|+.++++.
T Consensus 278 Di~~~a--KGLT~GY~Pl~a~l~~~~--------------I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~ 341 (449)
T COG0161 278 DILCLA--KGLTGGYLPLSAVLTSDR--------------IYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEED 341 (449)
T ss_pred Ceeeec--ccccccchhhHhHhhhHH--------------HHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcC
Confidence 999988 99977444 66666663 33333222 1222244556678888888898888762
Q ss_pred ChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
=++++++....+.+.|.+.+.+.|.|.+++|.
T Consensus 342 l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~ 373 (449)
T COG0161 342 LLERVAEIGAYLQAGLQAALADHPLVGDVRGL 373 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcEEEeecc
Confidence 23444444444444444444455688888875
No 345
>PRK07678 aminotransferase; Validated
Probab=99.06 E-value=3.5e-08 Score=92.03 Aligned_cols=153 Identities=10% Similarity=0.108 Sum_probs=92.9
Q ss_pred HHHHHhh---hcCCcEEEEcC--CCCCCccc----HHHHHHHHHhcCCEEEEehhhh-ccccc--ccCCCCCCC-CccEE
Q 022463 124 QLEKSAT---LFRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVA--AGVIPSPFE-YADVV 190 (297)
Q Consensus 124 ~l~~~l~---~~~~~~v~~~~--~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~--~~~~~~~~~-~~D~~ 190 (297)
.+++.+. ..++.+|++-+ .+.|...| +++++++|++||+++|+|+.+. .|-.. ...+. +. .+|++
T Consensus 201 ~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~--~gv~PDiv 278 (451)
T PRK07678 201 EIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMN--YGVKPDII 278 (451)
T ss_pred HHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHh--cCCCCCEE
Confidence 3566664 12466777732 23454443 7899999999999999999984 33221 01111 11 47999
Q ss_pred EecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcc-----cCCCCCCCchHHHHHHHHHHHHHhhhcCh
Q 022463 191 TTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-----FPGLQGGPHNHTITGLAVALKQVCTLITF 263 (297)
Q Consensus 191 ~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~t~~~~~~~al~~al~~~~~~~g~ 263 (297)
+++ |.|++. +-|+++++++ +.+.+.... .-..+.+.+...+++..++|+.+.+..-+
T Consensus 279 t~g--K~lggG~~Pi~av~~~~~--------------i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~ 342 (451)
T PRK07678 279 TMA--KGITSAYLPLSATAVKKE--------------IYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLI 342 (451)
T ss_pred Eee--cccccCCcceeEEEEcHH--------------HHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHH
Confidence 886 999774 2377777773 344333210 01112234567788888899988766223
Q ss_pred hhHHHHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 264 SHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 264 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
+++.+....+.+.|.+.+++.+.+.+++|+.
T Consensus 343 ~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~G 373 (451)
T PRK07678 343 ERSAQLGELLLEQLKEELGEHPLVGDIRGKG 373 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 5555555556666655556667777787764
No 346
>PRK07036 hypothetical protein; Provisional
Probab=99.06 E-value=1.6e-08 Score=94.55 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=90.8
Q ss_pred HHHHHHhhh---cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhh-ccccc--ccCCCCCCC-CccE
Q 022463 123 DQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVA--AGVIPSPFE-YADV 189 (297)
Q Consensus 123 ~~l~~~l~~---~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~--~~~~~~~~~-~~D~ 189 (297)
+.+++.+.. .++.+|++- ..+-|...| ++++.++|++||+++|+|++++ .|-.. ...... +. .+|+
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~-~gv~PDi 285 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAV-FGIQPDI 285 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhh-cCCCCCE
Confidence 345555542 245677773 223465555 8899999999999999999984 32221 111100 11 4798
Q ss_pred EEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhc------ccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 190 VTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 190 ~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
++++ |.|++. +-|.++++++ +.+.+... ...+.+.+.+...+++..+.|+.+.+..
T Consensus 286 vt~g--K~l~gG~~Pi~av~~~~~--------------i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~ 349 (466)
T PRK07036 286 ITFA--KGLTSGYQPLGAVIISER--------------LLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREG 349 (466)
T ss_pred EEEc--cccccCccccEEEEEcHH--------------HHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 8887 998774 2377777773 34433211 1111122345677888888899887652
Q ss_pred ChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
-++++.+....+.+.|. .+++.+.+.+++|.
T Consensus 350 l~~~~~~~g~~l~~~L~-~l~~~~~v~~vrG~ 380 (466)
T PRK07036 350 LCEHVREVGPYFEERLA-SLRELPLVGDVRGD 380 (466)
T ss_pred HHHHHHHHHHHHHHHHH-HhccCCCEEEEEee
Confidence 34555555555555554 34556667777775
No 347
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=99.05 E-value=4e-09 Score=94.27 Aligned_cols=255 Identities=14% Similarity=0.063 Sum_probs=149.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHcCCCCC------CCcceEEecCChHHHHHHHHHh-------cCCC-----------C
Q 022463 20 RYYGGNEYIDMAESLCQKRALEAFRLDPE------KWGVNVQSLSGSPSNFQVYTAL-------LKPH-----------D 75 (297)
Q Consensus 20 ~~~~~~~~~~~~e~~~~~~la~~~g~~~~------~~~~~v~~~sG~~~~~~~~~~~-------~~~g-----------d 75 (297)
..|..++..++||..+.+||+++++.+.. .-|..++..|.+.+++.++.+. ++.+ +
T Consensus 103 FtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~ 182 (511)
T KOG0628|consen 103 FTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLAR 182 (511)
T ss_pred ceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhh
Confidence 34457789999999999999999887421 1234567766665444333222 1222 2
Q ss_pred eEEE-ecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcC----CcEEEE-c--CCCCCCc
Q 022463 76 RIMA-LDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR----PKLIVA-G--ASAYARL 147 (297)
Q Consensus 76 ~Vl~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~----~~~v~~-~--~~~~G~~ 147 (297)
-|.+ ++.+|.+.-. ++.+.+.+.+.+ +.| .++.++.+.|+++|.++. +-++++ + .++.-..
T Consensus 183 lV~Y~SDqahssvek--------a~~i~~VklR~l--~td-~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~ 251 (511)
T KOG0628|consen 183 LVAYCSDQAHSSVEK--------ACLIAGVKLRAL--PTD-ENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAF 251 (511)
T ss_pred heEEecCcccchHHH--------hHhhcceeEEEe--ecc-cCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCcccccc
Confidence 2443 3444554432 344555445555 455 478999999999998633 234444 3 3334467
Q ss_pred ccHHHHHHHHHhcCCEEEEehhhhcccccccCCC---CCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccch
Q 022463 148 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVF 223 (297)
Q Consensus 148 ~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~---~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~ 223 (297)
.+++++..+|+++|++++||+|++......+... .-.+.+|.+.+..|||+..--- ..+|+++..... .-....
T Consensus 252 D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~--~~~~vd 329 (511)
T KOG0628|consen 252 DELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLS--RAFNVD 329 (511)
T ss_pred ccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceee--eeeecC
Confidence 8999999999999999999999775444332211 1122689999999999877555 788888752110 000000
Q ss_pred hhHHHHh-----hhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCccc
Q 022463 224 YDYEEKI-----NQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEE 289 (297)
Q Consensus 224 ~~~~~~~-----~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 289 (297)
+.+.+.- .....+.++-+.-+-+ .-++..++.+.-+ ++++..+++..|++.|.+-+.+-+.+|-
T Consensus 330 p~yL~h~~~~~~~Dyrhwqipl~rRfRS-LKlWfv~R~~Gve-~lq~~iR~h~~La~~fe~lv~~d~~FE~ 398 (511)
T KOG0628|consen 330 PLYLKHAYQGSAPDYRHWQIPLGRRFRS-LKLWFVLRSYGVE-NLQNYIREHVRLAKEFETLVRADPRFEI 398 (511)
T ss_pred hHhhcchhhccCCCccccccccccchhh-HHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhhcCCccee
Confidence 0011100 0000111111111122 2455666666555 6666666666888999888888777664
No 348
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.05 E-value=1.7e-08 Score=94.10 Aligned_cols=235 Identities=14% Similarity=0.112 Sum_probs=120.9
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCccc-ccccc-----ccc--ccceeeeee
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLS-HGYQT-----DTK--KISAVSIFF 106 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~-~~~~~-----~~~--~~~~~g~~~ 106 (297)
++|++++....+. ..+.+||+.++..+++.. ......|+.....|++... ..... ... .....+ +
T Consensus 103 e~L~~~~p~~~~~---v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~--~ 177 (457)
T PRK05639 103 EKLAEISPIENPK---VLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPN--V 177 (457)
T ss_pred HHHHhhCCCCcCE---EEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCC--c
Confidence 6666666543232 355578888888766644 2344567777766555321 11000 000 011111 2
Q ss_pred EeeecccCCC-----CCcCCH--------HHHHHHhh-----hcCCcEEEEcCC--CCCCcc----cHHHHHHHHHhcCC
Q 022463 107 ETMPYRLNES-----TGYIDY--------DQLEKSAT-----LFRPKLIVAGAS--AYARLY----DYERIRKVCNKQKA 162 (297)
Q Consensus 107 ~~v~~~~~~~-----~~~~d~--------~~l~~~l~-----~~~~~~v~~~~~--~~G~~~----~~~~i~~la~~~g~ 162 (297)
..+|++.... ....|. +.+++.+. ..++.+|++-+. +-|... -+++|.++|++||+
T Consensus 178 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~ 257 (457)
T PRK05639 178 VWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGI 257 (457)
T ss_pred eEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 2233221100 000122 23454442 225667777322 234333 26799999999999
Q ss_pred EEEEehhhhcccccccC-CCC-CCC-CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCC
Q 022463 163 IMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGL 238 (297)
Q Consensus 163 ~livD~a~~~g~~~~~~-~~~-~~~-~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 238 (297)
++|+|++|+ |.-..+. ... -+. .+|+++++ |.|++... |+++.+++ +.+....... .
T Consensus 258 llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~~g--K~l~gG~pi~av~~~~~--------------i~~~~~~~~~-~- 318 (457)
T PRK05639 258 LLVMDEVQT-GIGRTGKWFASEWFEVKPDLIIFG--KGVASGMGLSGVIGRKE--------------LMDLTSGSAL-L- 318 (457)
T ss_pred EEEEechhh-ccCcCchHHHHHhcCCCCCEEEec--hhhcCCCcceeEEehHH--------------HHhhcCCCcc-c-
Confidence 999999987 4311110 000 001 57999965 99986555 88888874 3331111111 1
Q ss_pred CCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCCC
Q 022463 239 QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 295 (297)
Q Consensus 239 ~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~ 295 (297)
+...+...+++..++|+.+.+..-+++..+....+.+.|.+-..+.+-+.+++|+..
T Consensus 319 T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl 375 (457)
T PRK05639 319 TPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGL 375 (457)
T ss_pred CCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeecccee
Confidence 223345667777888988876622344444444444444333334566777888753
No 349
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.04 E-value=1.8e-08 Score=93.52 Aligned_cols=151 Identities=11% Similarity=0.106 Sum_probs=91.0
Q ss_pred CHHHHHHHhhhc--CCcEEEEc--CCCCCCcccHHHHHHHHHhcCCEEEEehhhhccccccc--CCCCCCC-CccEEEec
Q 022463 121 DYDQLEKSATLF--RPKLIVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG--VIPSPFE-YADVVTTT 193 (297)
Q Consensus 121 d~~~l~~~l~~~--~~~~v~~~--~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~--~~~~~~~-~~D~~~~s 193 (297)
|++++++.+.+. ++.+|++- .+..+...++++|.++|++||+++|+|++| .|..... .... +. .+|+++++
T Consensus 173 d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~-~gv~PDi~t~g 250 (431)
T PRK06209 173 DIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKL-YGIVPDLSCFG 250 (431)
T ss_pred CHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHH-hCCCcceeeeh
Confidence 789999988642 34566652 222334455899999999999999999998 5542211 1110 11 46887765
Q ss_pred CCccCCCC-CceEEEEecCchhhccCCccchhhHHHH--hhhc--ccC---CCCCCCchHHHHHHHHHHHHHhhhcC-hh
Q 022463 194 THKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEK--INQA--VFP---GLQGGPHNHTITGLAVALKQVCTLIT-FS 264 (297)
Q Consensus 194 ~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~--~~~~--~~~---~~~~t~~~~~~~al~~al~~~~~~~g-~~ 264 (297)
|.|++. ++|+++++++ +.+. +... ..+ +.+.+++...+++..++|+.+.++ + ++
T Consensus 251 --K~lggG~p~~av~~~~~--------------i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~-~~~~ 313 (431)
T PRK06209 251 --KALGNGFAVSALAGKRE--------------YMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDE-DVIE 313 (431)
T ss_pred --hhhcCCcccEEEEEHHH--------------HHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhcc-CHHH
Confidence 998763 3477777763 3332 1100 001 112345567888889999999876 4 55
Q ss_pred hHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 265 HIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 265 ~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
+++++...+.+.+.+...+++.+.++
T Consensus 314 ~~~~~g~~l~~~L~~~~~~~~~~~~v 339 (431)
T PRK06209 314 RLHEQGAKLAAGVNEAAAEHGLQDHV 339 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 56565555555555444445544333
No 350
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.04 E-value=4.5e-08 Score=90.58 Aligned_cols=229 Identities=13% Similarity=0.083 Sum_probs=121.3
Q ss_pred HHHHHHcCCC-CCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccc-c-----ccc--cceeeee
Q 022463 37 KRALEAFRLD-PEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-D-----TKK--ISAVSIF 105 (297)
Q Consensus 37 ~~la~~~g~~-~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~-~-----~~~--~~~~g~~ 105 (297)
+++++++... .+. ..+.+||+.++..+++.. .....+|+.....|++...-...+ . ..+ ....+
T Consensus 90 ~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~-- 164 (421)
T PRK06777 90 ERINALAPIDGPAK---TAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGS-- 164 (421)
T ss_pred HHHHHhCCCCCCce---EEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCC--
Confidence 4455555421 122 366688998887766543 233456777776655543211110 0 000 00000
Q ss_pred eEeeecccCCC--CCcCCHHHHHHHhhh----cCCcEEEEcC--CCCCC-ccc---HHHHHHHHHhcCCEEEEehhhhcc
Q 022463 106 FETMPYRLNES--TGYIDYDQLEKSATL----FRPKLIVAGA--SAYAR-LYD---YERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 106 ~~~v~~~~~~~--~~~~d~~~l~~~l~~----~~~~~v~~~~--~~~G~-~~~---~~~i~~la~~~g~~livD~a~~~g 173 (297)
+..++++.... ....+++.+++.+.. .++.+|++.+ .+.|. +.| +++|.++|++||+++|+|+++. |
T Consensus 165 ~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g 243 (421)
T PRK06777 165 IFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-G 243 (421)
T ss_pred cEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C
Confidence 11122221100 011246677877752 2456777732 22452 344 7899999999999999999986 3
Q ss_pred cccccCCCCC---CC-CccEEEecCCccCCCC-CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHH
Q 022463 174 LVAAGVIPSP---FE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTIT 248 (297)
Q Consensus 174 ~~~~~~~~~~---~~-~~D~~~~s~~K~l~gp-~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 248 (297)
....+ ..+. +. ..|++++ +|.+++. +.|+++++++ +.+.+...... .+.+.+...++
T Consensus 244 ~gr~g-~~~~~~~~~~~pDiv~~--sK~l~~G~pigav~~~~~--------------i~~~~~~~~~~-~T~~~~p~~~a 305 (421)
T PRK06777 244 FARTG-KLFAMEYYDVKPDLITM--AKSLGGGMPISAVVGRAE--------------VMDAPAPGGLG-GTYAGNPLAVA 305 (421)
T ss_pred CccCC-chhhhhhcCCCCCEEee--ehhhcCCCceEEEEEcHH--------------HHhccCCCCCC-CCCCcCHHHHH
Confidence 32221 1111 11 4787765 5988642 2388888773 33333322111 12234667788
Q ss_pred HHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC----CCCcccccCC
Q 022463 249 GLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN----SENIEEDKGR 293 (297)
Q Consensus 249 al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~g~ 293 (297)
+..++|+.+.+. .+.++.+++.+++.++|++ .+.+.+++|.
T Consensus 306 aa~a~L~~~~~~----~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~ 350 (421)
T PRK06777 306 AALAVLDVIAEE----KLCQRALILGAHLVEVLEKAKASCPAIVDIRAR 350 (421)
T ss_pred HHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCc
Confidence 888888877654 3455555555566555554 4556666665
No 351
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.04 E-value=4.6e-08 Score=91.22 Aligned_cols=153 Identities=8% Similarity=0.074 Sum_probs=94.2
Q ss_pred CHHHHHHHhhh--cCCcEEEEcC--CC-CCCcc----cHHHHHHHHHhcCCEEEEehhhh-cccccc----cCCCCCCCC
Q 022463 121 DYDQLEKSATL--FRPKLIVAGA--SA-YARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAA----GVIPSPFEY 186 (297)
Q Consensus 121 d~~~l~~~l~~--~~~~~v~~~~--~~-~G~~~----~~~~i~~la~~~g~~livD~a~~-~g~~~~----~~~~~~~~~ 186 (297)
|++.+++.+.. .++.+|++-| .. .|... -+++++++|++||+++|.|+.++ .|-... ..... .
T Consensus 207 ~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv---~ 283 (453)
T PRK06943 207 ALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGV---W 283 (453)
T ss_pred HHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCC---C
Confidence 35677777753 2566777744 23 45333 36799999999999999999975 222111 11111 5
Q ss_pred ccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcc-----cCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 187 ADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-----FPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 187 ~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
+|+++++ |.|+|.. -|.++++++ +.+.+.... .-+.+.+.+...+++..+.|+.+.+
T Consensus 284 PDivt~g--Kgl~gG~~Pi~av~~~~e--------------i~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~ 347 (453)
T PRK06943 284 PDFLCLS--KGISGGYLPLSLVLSRDA--------------IFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE 347 (453)
T ss_pred CCeEeee--hhhccCcccceEEEEcHH--------------HHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 7999987 9987752 377888874 333332110 1111223456778888899999987
Q ss_pred hcChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 260 LITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
+.-+++..+....+.+.|.+ |.+.+.|.+++|+
T Consensus 348 ~~l~~~~~~~G~~l~~~L~~-l~~~~~v~~vrG~ 380 (453)
T PRK06943 348 DDVLARNARKSARLRAALAP-LAAHPQVRHLRQR 380 (453)
T ss_pred cCHHHHHHHHHHHHHHHHHH-HhcCCCEEeEecc
Confidence 62245566666666655554 3445677778776
No 352
>PRK07483 hypothetical protein; Provisional
Probab=99.03 E-value=6.1e-08 Score=90.19 Aligned_cols=157 Identities=14% Similarity=0.140 Sum_probs=94.9
Q ss_pred HHHHHHhhh---cCCcEEEEcCCC---CCCccc----HHHHHHHHHhcCCEEEEehhhhcccccccCCCC-CCC-CccEE
Q 022463 123 DQLEKSATL---FRPKLIVAGASA---YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PFE-YADVV 190 (297)
Q Consensus 123 ~~l~~~l~~---~~~~~v~~~~~~---~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~-~~~-~~D~~ 190 (297)
+.+++.+.. .++.+|++-+.. -|...| +++++++|++||+++|.|+.+..-.....+... -+. .+|++
T Consensus 186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv 265 (443)
T PRK07483 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLV 265 (443)
T ss_pred HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCee
Confidence 566665642 245677773221 243333 789999999999999999997521111111000 001 47999
Q ss_pred EecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcc--cC-CCCCCCchHHHHHHHHHHHHHhhhcChhh
Q 022463 191 TTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAV--FP-GLQGGPHNHTITGLAVALKQVCTLITFSH 265 (297)
Q Consensus 191 ~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~-~~~~t~~~~~~~al~~al~~~~~~~g~~~ 265 (297)
+++ |.|++.. -|.++++++ +.+.+.... +. +.+.+.+...+++..+.|+.+.+..-+++
T Consensus 266 ~~g--K~l~gG~~Pi~av~~~~~--------------i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~ 329 (443)
T PRK07483 266 TIA--KGLGAGYQPIGAVLASDR--------------IYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLAN 329 (443)
T ss_pred eeh--hhhccCccccEEEEEcHH--------------HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 987 9987753 377777773 344333211 11 11222456778888899998887633566
Q ss_pred HHHHhhhhHHHHHhhccCCCCcccccCCCC
Q 022463 266 IHVFSLHVYPAFVSNQNNSENIEEDKGRPC 295 (297)
Q Consensus 266 ~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~ 295 (297)
+.+....+.+.|.+.+++.+.+.+++|+-+
T Consensus 330 ~~~~g~~l~~~L~~l~~~~~~i~~vRG~Gl 359 (443)
T PRK07483 330 VRARGEQLRARLRERLGQHPHVGDIRGRGL 359 (443)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeeeEeeccc
Confidence 666666666666655566777888888743
No 353
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.03 E-value=5.4e-08 Score=90.91 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=88.4
Q ss_pred HHHHHHHhhhc-CCcEEEEcC-CCCC-Cccc---HHHHHHHHHhcCCEEEEehhhhccccccc-CCCCC-CC-CccEEEe
Q 022463 122 YDQLEKSATLF-RPKLIVAGA-SAYA-RLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSP-FE-YADVVTT 192 (297)
Q Consensus 122 ~~~l~~~l~~~-~~~~v~~~~-~~~G-~~~~---~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~~-~~-~~D~~~~ 192 (297)
++.+++.+... ++.+|++-+ .+.| ...| +++|+++|++||+++|+|++|+ |.--.+ ..... +. .+|++++
T Consensus 217 ~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~fa~e~~gv~PDiv~~ 295 (459)
T PRK06082 217 ADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN-GMGRTGEWFTHQAYGIEPDILCI 295 (459)
T ss_pred HHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHhHhhCCCCCEEEe
Confidence 35577777531 455666632 2234 2344 7899999999999999999986 221111 10000 01 4798886
Q ss_pred cCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHh
Q 022463 193 TTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 270 (297)
Q Consensus 193 s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~ 270 (297)
+ |.|+|.. -|.++.+++ +....... ....+.+.+...+++..++|+.+.++.-++++++..
T Consensus 296 g--Kgl~gG~~P~~av~~~~~--------------i~~~~~~~-~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g 358 (459)
T PRK06082 296 G--KGLGGGLVPIAAMITKDK--------------YNTAAQIS-LGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADS 358 (459)
T ss_pred c--ccccCCCCcceEEEEcHH--------------HHhhccCC-CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5 9997742 367777663 22211111 111122345567788888899887652244444444
Q ss_pred hhhHHHHHhhccCCCCcccccCCC
Q 022463 271 LHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 271 ~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
..+.+.|.+..++.+.+.+++|+-
T Consensus 359 ~~l~~~L~~l~~~~~~i~~vrG~G 382 (459)
T PRK06082 359 QFMRERLLEMKAKYPLIGDVRGIG 382 (459)
T ss_pred HHHHHHHHHHHhhCCCeeeeeecc
Confidence 444444444334466788888864
No 354
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.02 E-value=4.5e-08 Score=84.24 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=101.0
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCC--CCCccc----HHHHHHHHHhcCCEEEEehhhhcccccc-----cCCCCCCCCcc
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAA-----GVIPSPFEYAD 188 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~--~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~-----~~~~~~~~~~D 188 (297)
-|.++|+.++++.+.+++++-|.. -|.+.| +++++++|.+||+++|.|+.|..-..-. +.... ..|
T Consensus 194 ~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env---~PD 270 (427)
T KOG1402|consen 194 GDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV---RPD 270 (427)
T ss_pred CCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc---CCC
Confidence 378999999987566777774332 354433 7899999999999999999986433222 22222 579
Q ss_pred EEEecCCccCCCCCc--eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhH
Q 022463 189 VVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHI 266 (297)
Q Consensus 189 ~~~~s~~K~l~gp~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~ 266 (297)
++.+. |.|.|.-- +.++++++ ....+++..... ...-|.+..+...+||+.+.++ ++
T Consensus 271 ivilg--KalSGG~~Pvsavl~~~~--------------im~~~~pgeHgs-TyggNpLg~~vaiAalevi~ee----kL 329 (427)
T KOG1402|consen 271 IVILG--KALSGGVYPVSAVLADDD--------------IMLNIKPGEHGS-TYGGNPLGCAVAIAALEVIVEE----KL 329 (427)
T ss_pred eEEEe--ccccCCeeeeEEEEecHH--------------HHhccCCCcccc-ccCCChHHHHHHHHHHHHHHHH----HH
Confidence 88887 98876322 55666663 232233222111 1123557777778889888765 57
Q ss_pred HHHhhhhHHHHHhhccCCCC-----cccccCCCC
Q 022463 267 HVFSLHVYPAFVSNQNNSEN-----IEEDKGRPC 295 (297)
Q Consensus 267 ~~~~~~l~~~l~~~l~~~~~-----~~~~~g~~~ 295 (297)
.++...+-..|+.+|.+++. +++++||=.
T Consensus 330 ~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl 363 (427)
T KOG1402|consen 330 VERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGL 363 (427)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhheeeccce
Confidence 77788888888888888773 588888743
No 355
>PRK07481 hypothetical protein; Provisional
Probab=99.01 E-value=8.7e-08 Score=89.33 Aligned_cols=143 Identities=11% Similarity=0.112 Sum_probs=86.8
Q ss_pred CCcEEEEcCC--CCCCccc----HHHHHHHHHhcCCEEEEehhhhc-cccc----ccCCCCCCCCccEEEecCCccCCCC
Q 022463 133 RPKLIVAGAS--AYARLYD----YERIRKVCNKQKAIMLADMAHIS-GLVA----AGVIPSPFEYADVVTTTTHKSLRGP 201 (297)
Q Consensus 133 ~~~~v~~~~~--~~G~~~~----~~~i~~la~~~g~~livD~a~~~-g~~~----~~~~~~~~~~~D~~~~s~~K~l~gp 201 (297)
++.+|++-+. +-|...| +++++++|++||+++|.|+.++. |-.. ...... .+|+++++ |.+++.
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv---~PDiv~~g--Kgl~gG 287 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV---KPDIMCLA--KGITSG 287 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCC---CCCEEEEe--ecccCC
Confidence 4677777322 2354443 78999999999999999999762 2111 111111 57999987 998774
Q ss_pred --CceEEEEecCchhhccCCccchhhHHHHhhhcc-----cC-CCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhh
Q 022463 202 --RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-----FP-GLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHV 273 (297)
Q Consensus 202 --~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~-~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l 273 (297)
+-|+++++++ +.+.+.... +. +.+.+.+...+++..++|+.+.+..-++++.+....+
T Consensus 288 ~~Pi~av~~~~~--------------i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l 353 (449)
T PRK07481 288 YVPLGATMVNAR--------------IADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYL 353 (449)
T ss_pred CcCceEEEEcHH--------------HHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2367777773 333332211 00 1112235577788888898887662355556655556
Q ss_pred HHHHHhhccCCCCcccccCCC
Q 022463 274 YPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 274 ~~~l~~~l~~~~~~~~~~g~~ 294 (297)
.+.+.+..++.+.+.+++|+-
T Consensus 354 ~~~L~~l~~~~~~i~~vrG~G 374 (449)
T PRK07481 354 LEGLQPLKERFELVGDVRGKG 374 (449)
T ss_pred HHHHHHHhhcCCCeEEEeecc
Confidence 555555444566677887764
No 356
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=99.00 E-value=2.3e-09 Score=99.24 Aligned_cols=159 Identities=20% Similarity=0.234 Sum_probs=116.2
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH---HHHHHHHHhcC-CC----CeEEEecCCCCCcccccccc
Q 022463 23 GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP---SNFQVYTALLK-PH----DRIMALDLPHGGHLSHGYQT 94 (297)
Q Consensus 23 ~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~---~~~~~~~~~~~-~g----d~Vl~~~~~~~~~~~~~~~~ 94 (297)
++++...++| +.|+++.|.|. ..+.++||++ +-+.++++++. .| ...++|...|+.+.. .
T Consensus 579 GY~~lf~~Le----~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA--S-- 646 (1001)
T KOG2040|consen 579 GYQQLFTELE----KDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA--S-- 646 (1001)
T ss_pred hHHHHHHHHH----HHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh--h--
Confidence 4455666777 99999999986 3588899995 44457888743 33 357788878888743 2
Q ss_pred cccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcC--CcEEEEc-CCCCC-CcccHHHHHHHHHhcCCEEEEehhh
Q 022463 95 DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR--PKLIVAG-ASAYA-RLYDYERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~--~~~v~~~-~~~~G-~~~~~~~i~~la~~~g~~livD~a~ 170 (297)
+.++| +..+|+.++ .++.+|..+|+.+..+++ -.+++++ +|.+| ....+++++++.|+||--|..|+|.
T Consensus 647 ----A~Mag--mkvvpV~~~-~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGAN 719 (1001)
T KOG2040|consen 647 ----AAMAG--MKVVPVGCD-ANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGAN 719 (1001)
T ss_pred ----HHhcC--CEEEEeecc-CCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCC
Confidence 33445 445666777 779999999999887643 4566666 66678 5567999999999999999999986
Q ss_pred hcccccccCCCCCCC-CccEEEecCCccCCCCCc
Q 022463 171 ISGLVAAGVIPSPFE-YADVVTTTTHKSLRGPRG 203 (297)
Q Consensus 171 ~~g~~~~~~~~~~~~-~~D~~~~s~~K~l~gp~g 203 (297)
....+.+ +.|.+ |+|+.-...||+||-|.|
T Consensus 720 MNAqVGl---c~pGd~GaDV~HLNLHKTFcIPHG 750 (1001)
T KOG2040|consen 720 MNAQVGL---CRPGDIGADVCHLNLHKTFCIPHG 750 (1001)
T ss_pred ccceecc---cCCccccccceeecccceeeecCC
Confidence 5433332 22323 899999999999987766
No 357
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.00 E-value=6.9e-08 Score=89.40 Aligned_cols=152 Identities=10% Similarity=0.097 Sum_probs=89.4
Q ss_pred CHHHHHHHhhh--cCCcEEEEcC--CCC-CCc-c---cHHHHHHHHHhcCCEEEEehhhhcccccccCC--CCCCC-Ccc
Q 022463 121 DYDQLEKSATL--FRPKLIVAGA--SAY-ARL-Y---DYERIRKVCNKQKAIMLADMAHISGLVAAGVI--PSPFE-YAD 188 (297)
Q Consensus 121 d~~~l~~~l~~--~~~~~v~~~~--~~~-G~~-~---~~~~i~~la~~~g~~livD~a~~~g~~~~~~~--~~~~~-~~D 188 (297)
+++.+++.+.. .++.+|++-+ ... |.. . -++++.++|++||+++|+|++| .|.-..+.. ..-+. ..|
T Consensus 192 ~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PD 270 (429)
T PRK06173 192 AIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPD 270 (429)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCC
Confidence 46667777753 2456777744 233 433 2 3679999999999999999999 554222100 00011 468
Q ss_pred EEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhc----ccCCCCCCCchHHHHHHHHHHHHHhhhcC
Q 022463 189 VVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA----VFPGLQGGPHNHTITGLAVALKQVCTLIT 262 (297)
Q Consensus 189 ~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~al~~al~~~~~~~g 262 (297)
+++++ |.|+|. ..+.++.+++ +.+.+... ..-+.+...+...+++..++|+.+.+. +
T Consensus 271 iv~~g--K~l~gG~~p~~a~~~~~~--------------i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~-~ 333 (429)
T PRK06173 271 IMCIG--KALTGGYLTLSATITTEA--------------IAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLES-P 333 (429)
T ss_pred EEEee--hhhhCCccccceEEecHH--------------HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC-C
Confidence 88854 998653 3366666663 34433211 011111224568888888999988765 3
Q ss_pred hhhHHHHhhhhHHHHHhhcc---CCCCcccccCC
Q 022463 263 FSHIHVFSLHVYPAFVSNQN---NSENIEEDKGR 293 (297)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~g~ 293 (297)
+.++.+++.++|.++|+ +.+.+.+++|.
T Consensus 334 ---~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~ 364 (429)
T PRK06173 334 ---WQQNIQRIEAQLKQELAPAAEFDSVAEVRVL 364 (429)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCCeeeeecc
Confidence 35555556666666665 34556666664
No 358
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=98.98 E-value=9.8e-08 Score=88.46 Aligned_cols=210 Identities=15% Similarity=0.100 Sum_probs=107.6
Q ss_pred cCChHHHHHHHHHh--cCCCCeEEEecCCCCCccc-ccccc----ccc--ccceeeeeeEeeecccCCCCCcCCHHHHHH
Q 022463 57 LSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLS-HGYQT----DTK--KISAVSIFFETMPYRLNESTGYIDYDQLEK 127 (297)
Q Consensus 57 ~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~-~~~~~----~~~--~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~ 127 (297)
+||+.++..+++.. .....+|+.....|++... ..... ... +.... .+..+|++.......-|++.+++
T Consensus 110 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~l~~ 187 (425)
T PRK09264 110 PTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLN--NVTRMPYDGYFGGDVDTLAYLEK 187 (425)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCC--CeEEeCCCCccccchhHHHHHHH
Confidence 58998888766644 2344678877766555421 11100 000 11111 12223332110001136788888
Q ss_pred Hhhhc-----CCcEEEEc--CCCCCCc----ccHHHHHHHHHhcCCEEEEehhhhcccc------cccCCCCCCCCccEE
Q 022463 128 SATLF-----RPKLIVAG--ASAYARL----YDYERIRKVCNKQKAIMLADMAHISGLV------AAGVIPSPFEYADVV 190 (297)
Q Consensus 128 ~l~~~-----~~~~v~~~--~~~~G~~----~~~~~i~~la~~~g~~livD~a~~~g~~------~~~~~~~~~~~~D~~ 190 (297)
.+.+. ++.+|++- .++.|.. ..+++|.++|++||+++|+|++|+ |.- ....... ..|++
T Consensus 188 ~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~~~~~~~v---~PDi~ 263 (425)
T PRK09264 188 LLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA-GCGRTGTFFSFERAGI---TPDIV 263 (425)
T ss_pred HHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh-CCccccHHHHHhhcCC---CCCEE
Confidence 88642 34566662 3334533 258899999999999999999986 221 1111111 46888
Q ss_pred EecCCccCCCCCc--eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHH
Q 022463 191 TTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHV 268 (297)
Q Consensus 191 ~~s~~K~l~gp~g--G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~ 268 (297)
++| |.|++..- |++++++++ ..+....... +.+.+.+.+++..++++.+.+. +.+.+
T Consensus 264 t~~--K~l~~~G~pigav~~~~~i---------------~~~~~~~~~~-T~~gnp~~~aaa~a~l~~~~~~---~~l~~ 322 (425)
T PRK09264 264 TLS--KSISGYGLPMALVLIKPEL---------------DVWKPGEHNG-TFRGNNLAFVTATAALEEYWSD---DAFEK 322 (425)
T ss_pred Eec--cccCCCccceEEEEEchhh---------------hccCCCccCC-CCCCCHHHHHHHHHHHHHHHhh---hHHHH
Confidence 775 98854122 888887742 1111111111 1223445666666777433322 23444
Q ss_pred HhhhhHHHHHhhccC----CCCc-ccccCC
Q 022463 269 FSLHVYPAFVSNQNN----SENI-EEDKGR 293 (297)
Q Consensus 269 ~~~~l~~~l~~~l~~----~~~~-~~~~g~ 293 (297)
+.+.+.++|.++|++ .+.+ .+++|.
T Consensus 323 ~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~ 352 (425)
T PRK09264 323 EVKAKGELVRERLEEIAAKYPGLGAEVRGR 352 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceecceec
Confidence 555555555554443 4432 455554
No 359
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.98 E-value=6.3e-08 Score=89.65 Aligned_cols=154 Identities=11% Similarity=0.041 Sum_probs=87.2
Q ss_pred HHHHHHHhh----hcCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhccccccc-CCC-CCCC-Ccc
Q 022463 122 YDQLEKSAT----LFRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAG-VIP-SPFE-YAD 188 (297)
Q Consensus 122 ~~~l~~~l~----~~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~-~~~~-~~D 188 (297)
++.+++.+. ..++.+|++- ..+.|...| +++|.++|++||+++|+|+++.. ....+ ... ..+. ..|
T Consensus 182 ~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg-~gr~g~~~a~~~~~~~pD 260 (420)
T TIGR00700 182 LAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTG-FARTGAMFACEHEGPEPD 260 (420)
T ss_pred HHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccC-CcccchhHHHhhcCCCCC
Confidence 456776653 1245677773 233565554 78999999999999999999752 21111 100 0011 478
Q ss_pred EEEecCCccCCCCC-ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHH
Q 022463 189 VVTTTTHKSLRGPR-GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIH 267 (297)
Q Consensus 189 ~~~~s~~K~l~gp~-gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~ 267 (297)
++++ +|.+++.- -|+++.+++ +.+.+....... +.+.+....++..++|+.+.+..-.+++.
T Consensus 261 i~~l--sK~l~~G~pig~v~~~~~--------------i~~~~~~~~~~~-T~~~~pl~~aaa~a~l~~l~~~~~~~~~~ 323 (420)
T TIGR00700 261 LITT--AKSLADGLPLSGVTGRAE--------------IMDAPAPGGLGG-TYAGNPLACAAALAVLAIIESEGLIERAR 323 (420)
T ss_pred EEEe--eccccCCcceEEEEecHH--------------HHhhcCCCCcCC-CCCcCHHHHHHHHHHHHHHHhccHHHHHH
Confidence 7775 59886422 288888773 444333221111 22345577777788888876652233444
Q ss_pred HHhhhhHHHHHhhccCCCCcccccCC
Q 022463 268 VFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 268 ~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
+....+.+.+.+..+..+.+.+++|.
T Consensus 324 ~~g~~l~~~L~~l~~~~~~~~~vrg~ 349 (420)
T TIGR00700 324 QIGRLVTDRLTTLKAVDPRIGDVRGL 349 (420)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEeecc
Confidence 44444444444444445556666665
No 360
>PRK06148 hypothetical protein; Provisional
Probab=98.98 E-value=8.7e-08 Score=97.39 Aligned_cols=233 Identities=12% Similarity=0.060 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccc-----ccc-ccc-eeeeeeE
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-----DTK-KIS-AVSIFFE 107 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~-----~~~-~~~-~~g~~~~ 107 (297)
++|++.+..+.+. ..+.+||+.++..+++.. ......|++....|++........ ... +.. ..+ +.
T Consensus 670 e~L~~~~p~~~~~---v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~--~~ 744 (1013)
T PRK06148 670 ERLTATLPDGLTV---AFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDH--VE 744 (1013)
T ss_pred HHHHHhCCCCcCE---EEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCC--ce
Confidence 5566666432221 356688998888776644 233456887777655543211110 000 000 000 11
Q ss_pred eeecc------cCCCC---CcCCHHHHHHHhhh-----cCCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEe
Q 022463 108 TMPYR------LNEST---GYIDYDQLEKSATL-----FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 108 ~v~~~------~~~~~---~~~d~~~l~~~l~~-----~~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD 167 (297)
.++.+ .+..+ ..-..+.+++.+.. .++.+|++- ..+-|...| ++++.++|++||+++|.|
T Consensus 745 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~D 824 (1013)
T PRK06148 745 VAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIAD 824 (1013)
T ss_pred EcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 11111 11000 00012345555531 246677773 233455554 789999999999999999
Q ss_pred hhhh-ccccc-----ccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcc-cCCCC
Q 022463 168 MAHI-SGLVA-----AGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAV-FPGLQ 239 (297)
Q Consensus 168 ~a~~-~g~~~-----~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~ 239 (297)
++|. .|-.. ...... .+|+++++ |.|++..- |+++++++ +.+.+.... ..+ +
T Consensus 825 EVqtGfGRtG~~~~a~e~~gv---~PDivt~g--K~lggG~Plgav~~~~e--------------i~~~~~~g~~~~~-T 884 (1013)
T PRK06148 825 EVQVGFGRVGSHWWAFETQGV---VPDIVTMG--KPIGNGHPMGAVVTTRE--------------IADSFDNGMEYFN-T 884 (1013)
T ss_pred ecccCCCCCCCcchhhhhcCC---Ccceeeec--ccccCCcceEEEEEcHH--------------HHhhccCCCcccc-C
Confidence 9984 33222 111111 57998886 99977443 77777773 444333211 111 2
Q ss_pred CCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 240 GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 240 ~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
.+-+...+++..+.|+.+.++.-++++.+....+.+.|.+..++.+.|.+++|+-
T Consensus 885 f~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~G 939 (1013)
T PRK06148 885 FGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMG 939 (1013)
T ss_pred CCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeec
Confidence 2235577888888899887662234455555555555554445566677787764
No 361
>PRK06917 hypothetical protein; Provisional
Probab=98.97 E-value=1.4e-07 Score=87.86 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=92.1
Q ss_pred CHHHHHHHhhhc---CCcEEEEcCC--CCC-Ccc----cHHHHHHHHHhcCCEEEEehhhhccccccc-CCCC-CCC-Cc
Q 022463 121 DYDQLEKSATLF---RPKLIVAGAS--AYA-RLY----DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS-PFE-YA 187 (297)
Q Consensus 121 d~~~l~~~l~~~---~~~~v~~~~~--~~G-~~~----~~~~i~~la~~~g~~livD~a~~~g~~~~~-~~~~-~~~-~~ 187 (297)
+++.+++.++.. ++.+|++-|. +.| ... -++++.++|++||+++|+|++++ |.--.+ .... -+. .+
T Consensus 184 ~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-GfGRtG~~~a~~~~gv~P 262 (447)
T PRK06917 184 CATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-GLGRTGAMFAMEHWGVEP 262 (447)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-CcCcccchhhHHhcCCCC
Confidence 346677777642 4667777432 233 332 36799999999999999999986 331111 1000 011 47
Q ss_pred cEEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcc---cCCCCCCCchHHHHHHHHHHHHHhhhcC
Q 022463 188 DVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV---FPGLQGGPHNHTITGLAVALKQVCTLIT 262 (297)
Q Consensus 188 D~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~al~~al~~~~~~~g 262 (297)
|+++++ |.+++. +.|+++++++ +.+.+.... +.+.+.+.+...+++..++|+.+.+..-
T Consensus 263 Di~~~g--K~l~~G~~Pi~a~~~~~~--------------i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l 326 (447)
T PRK06917 263 DIMTLG--KGLGAGYTPIAATVVSDR--------------VMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNL 326 (447)
T ss_pred CEEEee--ehhccCCcceEEEEEcHH--------------HHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCH
Confidence 988876 999764 3477777773 444333211 1111223456778888888998876523
Q ss_pred hhhHHHHhhhhHHHHHhhccCCCCcccccCCC
Q 022463 263 FSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 294 (297)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~ 294 (297)
++++.+....+.+.|.+..++.+.+.+++|+-
T Consensus 327 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G 358 (447)
T PRK06917 327 PEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKG 358 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEeecc
Confidence 44555555555555544444466677888764
No 362
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=98.96 E-value=1.4e-07 Score=87.12 Aligned_cols=213 Identities=12% Similarity=0.071 Sum_probs=109.2
Q ss_pred cCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccc-c----ccccceeeeeeEeeecccCCCCCcCCHHHHHHHh
Q 022463 57 LSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-D----TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 129 (297)
Q Consensus 57 ~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~-~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l 129 (297)
+||+.++..+++.. .....+|+.....|++........ . .......-..+..+|.+.......-+++.+++.+
T Consensus 106 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~ 185 (412)
T TIGR02407 106 PTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLL 185 (412)
T ss_pred CCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHH
Confidence 68998888776644 234467888776655543211110 0 0010000001222222110000113467788888
Q ss_pred hhc-----CCcEEEEc--CCCCCCc----ccHHHHHHHHHhcCCEEEEehhhh-cccc----cccCCCCCCCCccEEEec
Q 022463 130 TLF-----RPKLIVAG--ASAYARL----YDYERIRKVCNKQKAIMLADMAHI-SGLV----AAGVIPSPFEYADVVTTT 193 (297)
Q Consensus 130 ~~~-----~~~~v~~~--~~~~G~~----~~~~~i~~la~~~g~~livD~a~~-~g~~----~~~~~~~~~~~~D~~~~s 193 (297)
.++ ++.+|++- ..+.|.. ..+++|.++|++||+++|+|++++ .|-. ....... .+|++++|
T Consensus 186 ~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v---~PDi~~~~ 262 (412)
T TIGR02407 186 EDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI---EPDIVCLS 262 (412)
T ss_pred HhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC---CCCEEEec
Confidence 631 45677772 2234542 236799999999999999999986 2211 1111111 57988776
Q ss_pred CCccCCC-CC-ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhh
Q 022463 194 THKSLRG-PR-GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSL 271 (297)
Q Consensus 194 ~~K~l~g-p~-gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~ 271 (297)
|+|++ .. -|+++.+++ + +.+...... .+.+.+...+++..++++.+.+. ..+.++.+
T Consensus 263 --K~lg~~G~pigav~~~~~--------------~-~~~~~~~~~-~T~~gnpl~~aaa~a~l~~~i~~---~~l~~~~~ 321 (412)
T TIGR02407 263 --KSISGYGLPLALTLIKPE--------------L-DVWKPGEHN-GTFRGNNLAFVTATAALEYYWSD---DAFEKAVQ 321 (412)
T ss_pred --hhccCCccceeEEEEchh--------------h-hccCCCccC-CCCCccHHHHHHHHHHHHHHhcc---cHHHHHHH
Confidence 99854 22 288888773 2 222111111 12233556666777888853333 23444445
Q ss_pred hhHHHHHhhcc----CCC-CcccccCC
Q 022463 272 HVYPAFVSNQN----NSE-NIEEDKGR 293 (297)
Q Consensus 272 ~l~~~l~~~l~----~~~-~~~~~~g~ 293 (297)
++.+++.++|+ .++ .+.+++|.
T Consensus 322 ~~g~~l~~~l~~l~~~~~~~~~~vrg~ 348 (412)
T TIGR02407 322 RKSEIIQERLDRIVAEYPELIKQVRGR 348 (412)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeeecc
Confidence 55555555444 455 34455554
No 363
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=98.96 E-value=7.9e-08 Score=89.06 Aligned_cols=152 Identities=11% Similarity=0.083 Sum_probs=89.1
Q ss_pred CHHHHHHHhhhc--CCcEEEEcC--CCCC-----CcccHHHHHHHHHhcCCEEEEehhhhcccccccCC-CC-CCC-Ccc
Q 022463 121 DYDQLEKSATLF--RPKLIVAGA--SAYA-----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI-PS-PFE-YAD 188 (297)
Q Consensus 121 d~~~l~~~l~~~--~~~~v~~~~--~~~G-----~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~D 188 (297)
|++++++.+... +..+|++.+ +..| ...++++|.++|++||+++|+|++| .|.-..+.. .. -+. .+|
T Consensus 193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v~pD 271 (427)
T TIGR00508 193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TGFGRTGKLFACEHAGVVPD 271 (427)
T ss_pred HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCCccchhhhcCCCCC
Confidence 567777777632 345666633 4443 3456889999999999999999998 443221110 00 011 578
Q ss_pred EEEecCCccCCCC--CceEEEEecCchhhccCCccchhhHHHHhhhcc----cCCCCCCCchHHHHHHHHHHHHHhhhcC
Q 022463 189 VVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV----FPGLQGGPHNHTITGLAVALKQVCTLIT 262 (297)
Q Consensus 189 ~~~~s~~K~l~gp--~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~al~~al~~~~~~~g 262 (297)
++++ .|.|.|. ..+.++.+++ +.+.+.... ....+.+.+...+++..++|+.+.+. .
T Consensus 272 i~~~--gK~l~gG~~p~~a~~~~~~--------------~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~-~ 334 (427)
T TIGR00508 272 ILCV--GKALTGGYMTLSATVTTDK--------------VAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEG-E 334 (427)
T ss_pred EEEe--chhhhcCcccceEEEEcHH--------------HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC-C
Confidence 8875 5998553 2366676663 334333211 01111123567788888889888655 3
Q ss_pred hhhHHHHhhhhHHHHHhhccCC---CCcccccCC
Q 022463 263 FSHIHVFSLHVYPAFVSNQNNS---ENIEEDKGR 293 (297)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~g~ 293 (297)
..++.+.+.++|.++|+++ +.+.+++|+
T Consensus 335 ---~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~ 365 (427)
T TIGR00508 335 ---WQKQVSAIENQLKRELSPLRKNPVVKDVRVL 365 (427)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCCEEeEecc
Confidence 3455556666666666554 335555554
No 364
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=98.94 E-value=4.8e-08 Score=87.80 Aligned_cols=231 Identities=12% Similarity=0.050 Sum_probs=120.7
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc--------CCCCeEEEecCCCCCcccccccc-------cccccce
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--------KPHDRIMALDLPHGGHLSHGYQT-------DTKKISA 101 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~-------~~~~~~~ 101 (297)
++|.+.++-..+. ..+.+||+.++..+++... .....|+.....|++........ .......
T Consensus 66 ~~L~~~~p~~~~~---v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~ 142 (339)
T PF00202_consen 66 EKLAELFPGGLDR---VFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLY 142 (339)
T ss_dssp HHHHHHSSTTEEE---EEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSS
T ss_pred hhhhhccccccce---eeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccc
Confidence 7788888433222 2444777878776665444 24467888777755533211110 0001111
Q ss_pred eeeeeEeeecccCCCC---CcCCHHHHHHHh---hhcCCcEEEEcCC--CCCCc----ccHHHHHHHHHhcCCEEEEehh
Q 022463 102 VSIFFETMPYRLNEST---GYIDYDQLEKSA---TLFRPKLIVAGAS--AYARL----YDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 102 ~g~~~~~v~~~~~~~~---~~~d~~~l~~~l---~~~~~~~v~~~~~--~~G~~----~~~~~i~~la~~~g~~livD~a 169 (297)
.+ +..+|++.. .. ..-..+.+++.+ ...+..+|++-|. +.|.. .-+++|+++|++||+++|+|+.
T Consensus 143 ~~--~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV 219 (339)
T PF00202_consen 143 PG--VVFVPFPDP-AADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEV 219 (339)
T ss_dssp TT--EEEEETTCH-HHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEET
T ss_pred cc--cccccCCcc-chhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccc
Confidence 11 122322210 00 000111233332 2235667777332 23432 2368999999999999999999
Q ss_pred hhcccccccC-----CCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCc
Q 022463 170 HISGLVAAGV-----IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPH 243 (297)
Q Consensus 170 ~~~g~~~~~~-----~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~ 243 (297)
++.-..-..+ ... .+|+++++ |.|++..- |.++++++ +.+.+....... +.+-+
T Consensus 220 ~tG~gRtG~~~a~~~~gv---~PDiv~~g--K~l~gG~p~sav~~~~~--------------i~~~~~~~~~~~-T~~g~ 279 (339)
T PF00202_consen 220 QTGFGRTGKFFASEHYGV---DPDIVTFG--KGLGGGLPISAVLGSEE--------------IMEAFQPGSHGS-TFGGN 279 (339)
T ss_dssp TTTTTTTSSSSGHHHHTS---SSSEEEEE--GGGGTTSSEEEEEEEHH--------------HHTTSCTTSSTC-TTTT-
T ss_pred cccccccCCccceecccc---cCcccccc--cchhhhhhcccccccch--------------hhcccccccccc-ccccc
Confidence 8632111111 111 46999998 99977544 88888884 333332222111 11234
Q ss_pred hHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 244 NHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 244 ~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
...+++..+.|+.+.+..-++++++....+.+.|.+--++.+.|.+++|.
T Consensus 280 p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~ 329 (339)
T PF00202_consen 280 PLSCAAALATLEILEEEDLLERVRELGERLREGLRELAARYPLIGEVRGI 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred hHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeee
Confidence 57777888889888876345555565556666555322223667777664
No 365
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=98.93 E-value=1.6e-07 Score=87.49 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=83.5
Q ss_pred CCcEEEE-cC-CCCCCc-c---cHHHHHHHHHhcCCEEEEehhhh-cccccccCCCC-CCC-CccEEEecCCccCCCCCc
Q 022463 133 RPKLIVA-GA-SAYARL-Y---DYERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPS-PFE-YADVVTTTTHKSLRGPRG 203 (297)
Q Consensus 133 ~~~~v~~-~~-~~~G~~-~---~~~~i~~la~~~g~~livD~a~~-~g~~~~~~~~~-~~~-~~D~~~~s~~K~l~gp~g 203 (297)
++.+|++ .. .+-|.. . -+++|+++|++||+++|.|+.+. .|-.. ..... -+. .+|+++++ |.+++..-
T Consensus 206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~g--K~l~~G~P 282 (442)
T TIGR00709 206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG-TMFAFEHAGIEPDFVVMS--KAVGGGLP 282 (442)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC-chhHHHHcCCCCcEEEEc--ccccCCcc
Confidence 4567776 32 233433 2 36799999999999999999975 22211 11000 011 47999865 98876322
Q ss_pred -eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhcc
Q 022463 204 -AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQN 282 (297)
Q Consensus 204 -G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~ 282 (297)
|+++.+++. +.+...... .+.+.+...+++..++|+.+.++.-.+++++....+.+.|.+-.+
T Consensus 283 igav~~~~~~---------------~~~~~~~~~-~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~ 346 (442)
T TIGR00709 283 LAVLLIAPEF---------------DAWQPAGHT-GTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIK 346 (442)
T ss_pred cEEEEEchHH---------------hccCCCcCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777631 222111111 123456677888889998887662234444444555555544444
Q ss_pred CCCCcccccCCC
Q 022463 283 NSENIEEDKGRP 294 (297)
Q Consensus 283 ~~~~~~~~~g~~ 294 (297)
+.+.+.+++|.-
T Consensus 347 ~~~~v~~vrG~G 358 (442)
T TIGR00709 347 EHPCIGNVRGRG 358 (442)
T ss_pred hCCCeeeeeccc
Confidence 567788888864
No 366
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.92 E-value=1.6e-07 Score=87.77 Aligned_cols=231 Identities=13% Similarity=0.107 Sum_probs=121.0
Q ss_pred HHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhc-------CC-CCeEEEecCCCCCcccccccc-ccc------ccce
Q 022463 37 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL-------KP-HDRIMALDLPHGGHLSHGYQT-DTK------KISA 101 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~-------~~-gd~Vl~~~~~~~~~~~~~~~~-~~~------~~~~ 101 (297)
++|++++....+. ..+.+||+.++..+++... .+ ..+|+.....|++.......+ ... ....
T Consensus 106 e~L~~~~p~~~~~---v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~ 182 (460)
T PRK06916 106 EKLIEVVPEGLKK---VFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLL 182 (460)
T ss_pred HHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCC
Confidence 5666666533222 3555788888887666432 13 367888777765543211111 000 0000
Q ss_pred eeeeeEeeecccC---CC--C----CcCCHHHHHHHhhh--cCCcEEEEcC--CC-CCCcc----cHHHHHHHHHhcCCE
Q 022463 102 VSIFFETMPYRLN---ES--T----GYIDYDQLEKSATL--FRPKLIVAGA--SA-YARLY----DYERIRKVCNKQKAI 163 (297)
Q Consensus 102 ~g~~~~~v~~~~~---~~--~----~~~d~~~l~~~l~~--~~~~~v~~~~--~~-~G~~~----~~~~i~~la~~~g~~ 163 (297)
.+ ...+|.+.. +. + ...+++.+++.+.. .++.+|++-+ .. .|... -++++.++|++||++
T Consensus 183 ~~--~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~l 260 (460)
T PRK06916 183 FE--AIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVL 260 (460)
T ss_pred CC--CEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 01 111222210 00 0 01245667777753 2466777744 23 34332 267999999999999
Q ss_pred EEEehhhhccccccc-CCCC-CCC-CccEEEecCCccCCCCC-c-eEEEEecCchhhccCCccchhhHHHHhhhc-----
Q 022463 164 MLADMAHISGLVAAG-VIPS-PFE-YADVVTTTTHKSLRGPR-G-AMIFFRKGVKEINKQGKEVFYDYEEKINQA----- 233 (297)
Q Consensus 164 livD~a~~~g~~~~~-~~~~-~~~-~~D~~~~s~~K~l~gp~-g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~----- 233 (297)
+|.|+++. |.--.+ .... -+. .+|+++++ |.|+|.. - |+++.+++ +.+.+...
T Consensus 261 lI~DEV~T-G~GRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~e--------------i~~~~~~~~~~~~ 323 (460)
T PRK06916 261 FITDEVAT-GFGRTGKMFACEHENVTPDIMTAG--KGLTGGYLPIAITVTTDE--------------IYNAFYGDYEEQK 323 (460)
T ss_pred EEeechhh-CCCcCchhhHHHhcCCCCCeeeee--hhhhcCccccceeeecHH--------------HHHHhhccccccC
Confidence 99999974 221111 1000 001 47988876 9887652 2 77777773 33332211
Q ss_pred -ccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC---CCCcccccCC
Q 022463 234 -VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN---SENIEEDKGR 293 (297)
Q Consensus 234 -~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~g~ 293 (297)
...+.+.+.+...+++..++|+.+.+. + +.++.+++.++|.+.|++ .+.+.+++|+
T Consensus 324 ~~~~~~T~~gnpl~~aaa~a~l~~l~~~-~---l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~ 383 (460)
T PRK06916 324 TFFHGHSYTGNPLGCAVALANLELYEKT-N---LIEQVARKTEYVATQLEDLFALKHVGDIRQL 383 (460)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHhhcCCCeEEeecC
Confidence 011112223567788888889888765 3 344455555555555544 4557777775
No 367
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.91 E-value=1.3e-07 Score=88.44 Aligned_cols=149 Identities=8% Similarity=0.059 Sum_probs=89.9
Q ss_pred HHHHHHHhhh--cCCcEEEEcC--CC-CCCcc----cHHHHHHHHHhcCCEEEEehhhh-cccccc----cCCCCCCCCc
Q 022463 122 YDQLEKSATL--FRPKLIVAGA--SA-YARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAA----GVIPSPFEYA 187 (297)
Q Consensus 122 ~~~l~~~l~~--~~~~~v~~~~--~~-~G~~~----~~~~i~~la~~~g~~livD~a~~-~g~~~~----~~~~~~~~~~ 187 (297)
++.+++.+.. .++.+|++-+ .. .|... -+++++++|++||+++|.|+.+. .|-... ..... .+
T Consensus 201 l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv---~P 277 (466)
T PRK07030 201 FAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGI---RP 277 (466)
T ss_pred HHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCC---CC
Confidence 5667777753 2456777644 22 34333 36799999999999999999975 222111 11111 47
Q ss_pred cEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhc------ccCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 188 DVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 188 D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
|+++++ |.|+|.. -|.++.+++ +.+.+... ..-+.+.+.+...+++..++|+.+.+
T Consensus 278 Div~~g--Kgl~gG~~Pi~av~~~~e--------------i~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~ 341 (466)
T PRK07030 278 DFLCLS--KALTGGYLPLAAVLTTDT--------------VYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ 341 (466)
T ss_pred CEEeee--hhccCCcccceEEEecHH--------------HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999987 9987753 377887774 34333211 01111223456778888889999877
Q ss_pred hcChhhHHHHhhhhHHHHHhhcc---CCCCcccccCC
Q 022463 260 LITFSHIHVFSLHVYPAFVSNQN---NSENIEEDKGR 293 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~g~ 293 (297)
+ + +.++.+++.++|.++|+ +.+.|.+++|+
T Consensus 342 ~-~---l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~ 374 (466)
T PRK07030 342 D-N---VIENNRALARRMAEATAHLADHPHVAEVRQT 374 (466)
T ss_pred c-C---HHHHHHHHHHHHHHHHHHHhcCCCEEEeEec
Confidence 6 3 34444445555544443 45667777775
No 368
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.91 E-value=3.2e-07 Score=85.93 Aligned_cols=152 Identities=9% Similarity=0.060 Sum_probs=93.2
Q ss_pred CHHHHHHHhhh--cCCcEEEEcC--CC-CCCcc----cHHHHHHHHHhcCCEEEEehhhh-ccccc----ccCCCCCCCC
Q 022463 121 DYDQLEKSATL--FRPKLIVAGA--SA-YARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVA----AGVIPSPFEY 186 (297)
Q Consensus 121 d~~~l~~~l~~--~~~~~v~~~~--~~-~G~~~----~~~~i~~la~~~g~~livD~a~~-~g~~~----~~~~~~~~~~ 186 (297)
+++.+++.+.. .++.+|++-+ .. .|... -+++++++|++||+++|.|+.+. .|-.. ...... .
T Consensus 222 ~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv---~ 298 (472)
T PRK08742 222 AADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV---M 298 (472)
T ss_pred HHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC---C
Confidence 35667777753 2466777744 22 35333 36799999999999999999975 33221 111111 5
Q ss_pred ccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhhcc-----cCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 187 ADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-----FPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 187 ~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
+|+++++ |.|+|.. -|.++++++ +.+.+.... .-+.+.+.+...+++..++|+.+.+
T Consensus 299 PDiv~~g--Kgl~gG~~Plaav~~~~e--------------i~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~ 362 (472)
T PRK08742 299 PDLLCLS--KGLTGGFLPLSAVLATQQ--------------LYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD 362 (472)
T ss_pred CCEEEEc--ccccCCCCCcceeeccHH--------------HHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHH
Confidence 7999987 9997653 377777774 333332110 0111223456778888899999987
Q ss_pred hcC-hhhHHHHhhhhHHHHHhhccCCCCcccccCC
Q 022463 260 LIT-FSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 293 (297)
Q Consensus 260 ~~g-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~ 293 (297)
+ + +++..+....+. .+.+.+++.+.|.+++|+
T Consensus 363 ~-~l~~~~~~~g~~l~-~~~~~~~~~~~i~dvRG~ 395 (472)
T PRK08742 363 D-DVIARNQPTAARMT-QLAAQIGEHPHVADVRQA 395 (472)
T ss_pred C-CHHHHHHHHHHHHH-HHHHHHhcCCCeeeEecc
Confidence 7 5 355555555454 344456667778888886
No 369
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.90 E-value=2.1e-07 Score=86.37 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=90.9
Q ss_pred CHHHHHHHhhh--cCCcEEEEc--CCCCCCc----ccHHHHHHHHHhcCCEEEEehhhh-cccccc----cCCCCCCCCc
Q 022463 121 DYDQLEKSATL--FRPKLIVAG--ASAYARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA----GVIPSPFEYA 187 (297)
Q Consensus 121 d~~~l~~~l~~--~~~~~v~~~--~~~~G~~----~~~~~i~~la~~~g~~livD~a~~-~g~~~~----~~~~~~~~~~ 187 (297)
+++++++.+.. .++.++++. ..+.|.. ..+++|.++|++||+++|+|++|+ .|.... ..... .+
T Consensus 204 ~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv---~P 280 (431)
T TIGR03251 204 ALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV---QP 280 (431)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCC---CC
Confidence 34556666652 256787773 2234543 357899999999999999999987 333210 11111 57
Q ss_pred cEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHH-HhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcCh-hh
Q 022463 188 DVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEE-KINQAVFPGLQGGPHNHTITGLAVALKQVCTLITF-SH 265 (297)
Q Consensus 188 D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~-~~ 265 (297)
|+++++ |.+ |.+|++..++ +. +..+ .+........+.+.+...+++..++|+.+.+. ++ ++
T Consensus 281 Di~~~g--K~~--~~~g~~~~~~-i~-----------~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~-~l~~~ 343 (431)
T TIGR03251 281 DIVAFG--KKT--QVCGIMAGRR-VD-----------EVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEE-RLVDN 343 (431)
T ss_pred CEEEec--ccC--ccceEEecch-HH-----------HhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhc-CHHHH
Confidence 999876 765 4556665432 10 0111 01000000111234567788888999998877 53 67
Q ss_pred HHHHhhhhHHHHHhhccCCC-CcccccCCC
Q 022463 266 IHVFSLHVYPAFVSNQNNSE-NIEEDKGRP 294 (297)
Q Consensus 266 ~~~~~~~l~~~l~~~l~~~~-~~~~~~g~~ 294 (297)
+++....+.+.|.+..++.+ .+.+++|+-
T Consensus 344 ~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G 373 (431)
T TIGR03251 344 ARVQGAHLLARLHELAAEFPHLVSNPRGRG 373 (431)
T ss_pred HHHHHHHHHHHHHHHHHhCccceecccccc
Confidence 77777777777766545566 566777753
No 370
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.90 E-value=3.2e-07 Score=85.79 Aligned_cols=216 Identities=11% Similarity=0.098 Sum_probs=116.6
Q ss_pred cCChHHHHHHHHHh--cCCCCeEEEecCCCCCcccccccc-cc------cccceeeeeeEeeecccCCC---------CC
Q 022463 57 LSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-DT------KKISAVSIFFETMPYRLNES---------TG 118 (297)
Q Consensus 57 ~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~-~~------~~~~~~g~~~~~v~~~~~~~---------~~ 118 (297)
+||+.++..+++.. .....+|+.....|++.......+ .. .+....+ +..++++.... ..
T Consensus 134 ~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~ 211 (464)
T PRK06938 134 PTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPG--VQFLPYPYDYRCPFGLGGEAGV 211 (464)
T ss_pred CCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCC--cEEeCCCccccccccCchhhHH
Confidence 58998888776643 233467777776655543211111 00 0000111 22233332100 00
Q ss_pred cCCHHHHHHHhhhc-----CCcEEEEcCC--CCCCcc----cHHHHHHHHHhcCCEEEEehhhhc-cccc----ccCCCC
Q 022463 119 YIDYDQLEKSATLF-----RPKLIVAGAS--AYARLY----DYERIRKVCNKQKAIMLADMAHIS-GLVA----AGVIPS 182 (297)
Q Consensus 119 ~~d~~~l~~~l~~~-----~~~~v~~~~~--~~G~~~----~~~~i~~la~~~g~~livD~a~~~-g~~~----~~~~~~ 182 (297)
..+++.+++.+.+. ++.+|++-+. +-|... -++++.++|++||+++|.|+.++. |-.. ......
T Consensus 212 ~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv 291 (464)
T PRK06938 212 RANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGI 291 (464)
T ss_pred HHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCC
Confidence 12367788887641 3567776322 234333 267999999999999999999752 2111 111111
Q ss_pred CCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhc
Q 022463 183 PFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 261 (297)
Q Consensus 183 ~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~ 261 (297)
.+|+++++ |.|+|..- |+++.+++ . +.+......+ +.+.+...+++..+.|+.+.++.
T Consensus 292 ---~PDiv~~g--KglggG~PlsAv~~~~~--------------~-~~~~~~~~~~-T~~gnpla~Aaa~a~L~~l~~~~ 350 (464)
T PRK06938 292 ---IPDVVVLS--KAIGGSLPLAVVVYREW--------------L-DTWQPGAHAG-TFRGNQMAMAAGSATLRYIKEHR 350 (464)
T ss_pred ---CCCEEEee--ccccCCCceEEEeehhH--------------h-hccCCCCCCC-CCCcCHHHHHHHHHHHHHHHHhH
Confidence 47999987 99876433 67777663 1 2221111111 22335577788888898887652
Q ss_pred ChhhHHHHhhhhHHHHHhhccCCCCcccccCCCC
Q 022463 262 TFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 295 (297)
Q Consensus 262 g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~g~~~ 295 (297)
-++++++....+.+.|.+..++.+.|.+++|...
T Consensus 351 l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl 384 (464)
T PRK06938 351 LAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGL 384 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccce
Confidence 3444555444555444443344677888888754
No 371
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.85 E-value=2.3e-07 Score=86.35 Aligned_cols=150 Identities=12% Similarity=0.106 Sum_probs=85.3
Q ss_pred CHHHHHHHhhhc--CCcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhhcccccccC----CCCCC-CCc
Q 022463 121 DYDQLEKSATLF--RPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPF-EYA 187 (297)
Q Consensus 121 d~~~l~~~l~~~--~~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~~----~~~~~-~~~ 187 (297)
+++.+++.+.++ ++.+|++- ..+-|...| +++|.++|++||+++|+|++|. |.-..+. ...-. ..+
T Consensus 237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~t-GfGrtG~~fa~e~~gv~~~P 315 (464)
T TIGR00699 237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQT-GVGATGKFWAHEHWNLDDPP 315 (464)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeee-CCCCCcchhHHHhcCCCCCC
Confidence 466777877642 45677773 333466666 8899999999999999999984 3322110 00000 037
Q ss_pred cEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHH
Q 022463 188 DVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIH 267 (297)
Q Consensus 188 D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~ 267 (297)
|+++++ |.|++ ||+++.++. + ...... .-+.+.+.+...+++..++|+.+.+..-++++.
T Consensus 316 Di~t~g--K~lg~--gG~~~~~~~--------------~-~~~~~~-~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~ 375 (464)
T TIGR00699 316 DMVTFS--KKFQT--AGYFFHDPA--------------F-RPNKPY-RQFNTWMGDPSRALILREIIQEIKRKDLLENVA 375 (464)
T ss_pred CEEEeh--hhhcc--CCccccchh--------------c-cCCCCc-ccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 998886 98842 244332221 1 000010 011122345677788888899887662244444
Q ss_pred HHhhhhHHHHHhhccCCC-Cccccc
Q 022463 268 VFSLHVYPAFVSNQNNSE-NIEEDK 291 (297)
Q Consensus 268 ~~~~~l~~~l~~~l~~~~-~~~~~~ 291 (297)
+....+.+.|.+..++++ .|.+++
T Consensus 376 ~~g~~l~~~L~~l~~~~~~~i~~vR 400 (464)
T TIGR00699 376 HVGDYLYTGLEDLQKKYPEFIQNLR 400 (464)
T ss_pred HHHHHHHHHHHHHHHhCCCceeeec
Confidence 444555555554434566 577777
No 372
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=98.85 E-value=1.1e-07 Score=79.48 Aligned_cols=207 Identities=16% Similarity=0.146 Sum_probs=130.5
Q ss_pred eEEecCCh-HHHHHHHHHhcCCC-CeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhh
Q 022463 53 NVQSLSGS-PSNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 130 (297)
Q Consensus 53 ~v~~~sG~-~~~~~~~~~~~~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~ 130 (297)
++-++-|+ ...-.+++..+-|| ++|+... |.+.+....+.+.+.++ +.++.+ .++.++.|.+.+.+.
T Consensus 88 nic~GvGsDE~ID~iiR~~c~PGkeKIl~cP--------PtysMY~v~A~iNd~eV--vkvpl~-pdF~lnvdai~evl~ 156 (375)
T KOG0633|consen 88 NICVGVGSDELIDLIIRCVCDPGKEKILDCP--------PTYSMYVVDAAINDAEV--VKVPLN-PDFSLNVDAIAEVLE 156 (375)
T ss_pred ceEEecCcHHHHHHHHhheecCCccceeecC--------CcceeEEEEeecCCceE--EEecCC-CCccccHHHHHHHHh
Confidence 38888888 45555888889999 7788766 33333333445555444 444566 479999999999887
Q ss_pred hc-CCcEEEE-cCCC-CCCcccHHHHHHHHHhc-CCEEEEehhhhcccccccCCCCCC--CCccE-EEecCCccC--CCC
Q 022463 131 LF-RPKLIVA-GASA-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSPF--EYADV-VTTTTHKSL--RGP 201 (297)
Q Consensus 131 ~~-~~~~v~~-~~~~-~G~~~~~~~i~~la~~~-g~~livD~a~~~g~~~~~~~~~~~--~~~D~-~~~s~~K~l--~gp 201 (297)
.. +++++++ ++.| +|...-.+.|.++.+.- |.++++|+|+. .+.. .....++ .+... ++-+++|.+ .|.
T Consensus 157 ~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYi-dFsg-~~S~~~lV~kYpNLivlqTlSKsfGLAGi 234 (375)
T KOG0633|consen 157 LDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYI-DFSG-VESRMKLVKKYPNLIVLQTLSKSFGLAGI 234 (375)
T ss_pred ccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeE-eecc-ccccchHhHhCCceeehhhhhhhcCccee
Confidence 53 6889988 6777 89888888888887764 78999999853 1111 1111111 13343 445667864 333
Q ss_pred CceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhh--cChhhHHHHhhhhHHHHHh
Q 022463 202 RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL--ITFSHIHVFSLHVYPAFVS 279 (297)
Q Consensus 202 ~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~--~g~~~~~~~~~~l~~~l~~ 279 (297)
+-|+-++.. .+...++....|.. .+.++-.+||+.+... +.++..++-+.....+|..
T Consensus 235 RvG~~~~~~--------------~ia~iln~~KaPYN------iS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~k 294 (375)
T KOG0633|consen 235 RVGYGAFPL--------------SIAEILNRAKAPYN------ISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFK 294 (375)
T ss_pred EeecccccH--------------HHHHHHHhccCCcc------ccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 337777666 34554555444432 2222334445544422 2466677777777888889
Q ss_pred hccCCCCcccccC
Q 022463 280 NQNNSENIEEDKG 292 (297)
Q Consensus 280 ~l~~~~~~~~~~g 292 (297)
.|.+++++.+-+|
T Consensus 295 eLt~v~~~~~~~g 307 (375)
T KOG0633|consen 295 ELTEVPFLNDYPG 307 (375)
T ss_pred HhhcCccccCCCC
Confidence 9999998776443
No 373
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.85 E-value=2.3e-08 Score=89.02 Aligned_cols=214 Identities=14% Similarity=0.077 Sum_probs=122.6
Q ss_pred HHcCCCCCCCcceEEecCChHHH--HHHHHHhc--CCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCC
Q 022463 41 EAFRLDPEKWGVNVQSLSGSPSN--FQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 116 (297)
Q Consensus 41 ~~~g~~~~~~~~~v~~~sG~~~~--~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 116 (297)
+..|..... ..++.+.++.+ ..++.++- ..++.|+.+..+|.+.+.... .+|.+++.++-...++
T Consensus 67 ~~~G~~~~~---~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~--------~AGl~~~vV~~~~~~d 135 (389)
T PF05889_consen 67 RLAGLRSVK---SCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIE--------RAGLEPVVVENVLEGD 135 (389)
T ss_dssp HHTTHTTHC---EEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHH--------HTT-EEEEE-EEEETT
T ss_pred HHcCCcccc---ceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHH--------hcCCeEEEeeccCCCC
Confidence 556776322 13333444322 12445552 567999999988887755333 3444455555334435
Q ss_pred CCcCCHHHHHHHhhhcC--CcEEEE-cCCC-CCCccc-HHHHHHHHHhcCCEEEEehhhhccccc------ccCCCCCCC
Q 022463 117 TGYIDYDQLEKSATLFR--PKLIVA-GASA-YARLYD-YERIRKVCNKQKAIMLADMAHISGLVA------AGVIPSPFE 185 (297)
Q Consensus 117 ~~~~d~~~l~~~l~~~~--~~~v~~-~~~~-~G~~~~-~~~i~~la~~~g~~livD~a~~~g~~~------~~~~~~~~~ 185 (297)
.-..|++.+++.+.+.. +.+.++ +.+. +|...| +++|+++|++||++.++-+|+++=... --....
T Consensus 136 ~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~G--- 212 (389)
T PF05889_consen 136 ELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVG--- 212 (389)
T ss_dssp EEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHS---
T ss_pred eeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcC---
Confidence 55778889999887533 344455 4555 577776 999999999999999999997651100 000011
Q ss_pred CccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhh
Q 022463 186 YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSH 265 (297)
Q Consensus 186 ~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~ 265 (297)
..|+++-|+.|.|..|-||.++...+. ...+.+... +|++.+..+... +...|..+... |+..
T Consensus 213 Rvda~vqS~dkNF~VPvGgai~As~~~------------~~i~~vs~~-YpGRas~sp~ld---~~itLl~LG~~-g~~~ 275 (389)
T PF05889_consen 213 RVDAFVQSTDKNFMVPVGGAIMASFDP------------SGILAVSKE-YPGRASASPSLD---LFITLLSLGCT-GYGA 275 (389)
T ss_dssp TCSEEEEEHHHHHCEESSHEEEEESSH------------HHHHHHHHT-SHSHBTSHHHHH---HHHHHHHHHHH-HHHH
T ss_pred CcceeeeecCCCEEecCCCcEEEecCH------------HHHHHHHHH-hhhhhhcccchH---HHHHHHHHhhh-HHHH
Confidence 578999999999999999666666542 344444433 455532222211 12233444445 6777
Q ss_pred HHHHhhhhHHHHHhhccCCC
Q 022463 266 IHVFSLHVYPAFVSNQNNSE 285 (297)
Q Consensus 266 ~~~~~~~l~~~l~~~l~~~~ 285 (297)
......+...++.++|+++.
T Consensus 276 ll~~r~~~f~~l~erl~~~a 295 (389)
T PF05889_consen 276 LLKERKASFPYLKERLKKWA 295 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777654
No 374
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=98.84 E-value=3.2e-08 Score=86.58 Aligned_cols=233 Identities=12% Similarity=0.041 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecCCh-H-HHHHHHHHhcCCCCe--EEEecCCCCCcccccccccccccceeee
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-P-SNFQVYTALLKPHDR--IMALDLPHGGHLSHGYQTDTKKISAVSI 104 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~-~-~~~~~~~~~~~~gd~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (297)
.++-+.+++.++++++.+.+. .|.|..|. + ...++..+++.++.. |.+-.-+..+.- +.+.+... .
T Consensus 49 ~~v~~~a~~~lreLl~iPd~Y---~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~------eA~~~~~~-~ 118 (365)
T COG1932 49 KNVLEEAEKDLRELLNIPDDY---KVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIK------EAKKVGKQ-P 118 (365)
T ss_pred HHHHHHHHHHHHHHhCCCCCc---eEEEEcCccHHHHHHHHHhhhcccCceeEeeeehhHhHHH------HHHHhccc-c
Confidence 334445669999999998654 57776665 3 333366677665543 443221111110 00000000 0
Q ss_pred eeEeeecccCCCCCcCCHHHHHHHhhhcCCcEEEE--cCCCCCCccc-HHHHHHHHHhcCCEEEEehhhhcccccccCCC
Q 022463 105 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA--GASAYARLYD-YERIRKVCNKQKAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 105 ~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~--~~~~~G~~~~-~~~i~~la~~~g~~livD~a~~~g~~~~~~~~ 181 (297)
.+........+-....|++..+ +.+ +..-|.+ +.+..|...| ... +..+ .++++|++..+...++|...
T Consensus 119 ~~~~~~~~~~~~~~iP~~~~~~--~~~-~~ayv~~~~NeTi~Gv~v~~~p~---~~~~--~~~v~D~SS~ilsr~iDvsk 190 (365)
T COG1932 119 KLIDARIEEAGYGSIPDLSKWD--FSD-NDAYVHFCWNETISGVEVPELPD---IGSD--GLLVADASSAILSRPIDVSK 190 (365)
T ss_pred cccccceeccCccCCCChhhcc--cCC-CccEEEEecCCcccceEccCCCC---CCCC--ceEEEecccHHhcCCCChhH
Confidence 0000100011011233333332 332 3333444 4444675544 122 1112 88999999888777777665
Q ss_pred CCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCC-ccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 182 SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQG-KEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 182 ~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
.|++.++.+|.| ||.| ++++.++++..+...- .+ ...++..........-||++..++-+.-.++++..
T Consensus 191 -----~dviyagaQKnl-GpaGltvvIvr~~~l~r~~~~~~P---~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~ 261 (365)
T COG1932 191 -----YDVIYAGAQKNL-GPAGLTVVIVRPDLLERAESYTLP---SIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKS 261 (365)
T ss_pred -----cceEEEehhhcc-CccceEEEEEcHHHHhcccccCCc---hHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHH
Confidence 599999999997 8899 9999999753221100 11 11222222222233558888999999999999999
Q ss_pred hcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 260 LITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
..|++.+.++.+.-++.|++-+.+.++..
T Consensus 262 ~GGl~~~~~rn~~ka~~LY~~id~s~fy~ 290 (365)
T COG1932 262 QGGLEALEARNQAKAQLLYDWIDKSDFYR 290 (365)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999998887543
No 375
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.84 E-value=5e-07 Score=84.44 Aligned_cols=140 Identities=13% Similarity=0.096 Sum_probs=83.7
Q ss_pred CcEEEEc--CCCCCCccc----HHHHHHHHHhcCCEEEEehhhh-ccccc----ccCCCCCCCCccEEEecCCccCCCCC
Q 022463 134 PKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVA----AGVIPSPFEYADVVTTTTHKSLRGPR 202 (297)
Q Consensus 134 ~~~v~~~--~~~~G~~~~----~~~i~~la~~~g~~livD~a~~-~g~~~----~~~~~~~~~~~D~~~~s~~K~l~gp~ 202 (297)
+.+|++- ..+-|...| ++++.++|++||+++|.|+.++ .|-.. ...... .+|+++++ |.|+|..
T Consensus 226 iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv---~PDivt~g--K~l~gG~ 300 (459)
T PRK06931 226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGI---EPDIIVMS--KAVGGGL 300 (459)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCC---CCCEEEec--ccccCCc
Confidence 5677773 222343332 7799999999999999999975 22111 111111 47999987 9987633
Q ss_pred c-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhc
Q 022463 203 G-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQ 281 (297)
Q Consensus 203 g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l 281 (297)
- |+++.+++ + +.+......+ +.+.+...+++..+.|+.+.+..-++++.+....+.+.|.+..
T Consensus 301 Pi~av~~~~~--------------~-~~~~~~~~~~-T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~ 364 (459)
T PRK06931 301 PLAVLGIKKE--------------F-DAWQPGGHTG-TFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQ 364 (459)
T ss_pred ceeeeeeHHH--------------H-hhccCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 66666552 1 2222111111 2234557778888889888766334555555556666665544
Q ss_pred cCCCCcccccCCC
Q 022463 282 NNSENIEEDKGRP 294 (297)
Q Consensus 282 ~~~~~~~~~~g~~ 294 (297)
++.+.+.+++|+-
T Consensus 365 ~~~~~i~~vrG~G 377 (459)
T PRK06931 365 KRYPCIGNVRGRG 377 (459)
T ss_pred HhCCCeEeEecCc
Confidence 5567778888764
No 376
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=98.82 E-value=9.5e-07 Score=82.55 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=77.5
Q ss_pred CCcEEEEcCCC--CCCccc----HHHHHHHHHhcCCEEEEehhhhc-ccccccCCCC-CCC-CccEEEecCCccCCCCCc
Q 022463 133 RPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHIS-GLVAAGVIPS-PFE-YADVVTTTTHKSLRGPRG 203 (297)
Q Consensus 133 ~~~~v~~~~~~--~G~~~~----~~~i~~la~~~g~~livD~a~~~-g~~~~~~~~~-~~~-~~D~~~~s~~K~l~gp~g 203 (297)
++.+|++.|.. -|...| +++|.++|++||+++|+|+.+.. +... ..... .+. ..|++++ +|.+++.--
T Consensus 219 ~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g-~~~a~~~~~v~pDi~t~--sK~l~~G~p 295 (451)
T PRK06918 219 TIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG-KYFAIEHFDVVPDLITV--SKSLGAGVP 295 (451)
T ss_pred ceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC-ceehhHhcCCCCCEEee--ehhhcCCCc
Confidence 45666664322 343332 67999999999999999999642 2111 11100 011 3686654 598864222
Q ss_pred -eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhcc
Q 022463 204 -AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQN 282 (297)
Q Consensus 204 -G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~ 282 (297)
|+++++++ +.+.+...... ...+.+....++..++++.+.+..-.+++++....+.+.+.+..+
T Consensus 296 ig~v~~~~~--------------i~~~~~~~~~~-~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~ 360 (451)
T PRK06918 296 ISGVIGRKE--------------IMDESAPGELG-GTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKN 360 (451)
T ss_pred cEEEEEcHH--------------HHhccCCCCcC-cCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 88888773 34433322111 122345566777778888886551233444444444444443333
Q ss_pred CCCCcccccCC
Q 022463 283 NSENIEEDKGR 293 (297)
Q Consensus 283 ~~~~~~~~~g~ 293 (297)
+.+.+.+++|.
T Consensus 361 ~~~~~~~vrg~ 371 (451)
T PRK06918 361 KYNCIGDVRGL 371 (451)
T ss_pred hCCCceeeccc
Confidence 34445555553
No 377
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.5e-08 Score=84.65 Aligned_cols=164 Identities=18% Similarity=0.155 Sum_probs=110.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccc
Q 022463 21 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 100 (297)
Q Consensus 21 ~~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 100 (297)
+|+..+-.-++| +.+++++|++.. ++...|.++...++.++.+.||.|.+.+..+.+ .+.|.+
T Consensus 134 FYGt~DvHldlE----~~iakF~G~E~a-----ivYs~gF~ti~S~ipafsKrGDIi~~de~~nfa--------Iq~Glq 196 (467)
T KOG1358|consen 134 FYGTIDVHLDLE----KRIAKFMGTEDA-----IVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFA--------IQKGLQ 196 (467)
T ss_pred ccccceeecccH----HHHHHhhCCcce-----eeeccccchhhhcchhhhccCcEEEEehhhhHH--------HHHHHh
Confidence 455555566788 899999999864 888888865555899999999999987732222 233333
Q ss_pred eeeeeeEeeecccCCCCCcCCHHHHHHHhhhc------C-----Cc-EEEE-c-CCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 101 AVSIFFETMPYRLNESTGYIDYDQLEKSATLF------R-----PK-LIVA-G-ASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 101 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~-----~~-~v~~-~-~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
+.-..+ ..+ . ..|.++++..+.+. + |+ .|+. + ..|+|...|+.+|.++..+|...+|.
T Consensus 197 lSRS~i-~~F-k------hndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~Rvil 268 (467)
T KOG1358|consen 197 LSRSTI-SYF-K------HNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVIL 268 (467)
T ss_pred hhhhee-EEe-c------CCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEE
Confidence 331111 121 1 23566676665431 1 22 3444 4 77899999999999999999999999
Q ss_pred ehhhhccccccc------CCCCCCCCccEEEecCCccCCCCCceEEEEec
Q 022463 167 DMAHISGLVAAG------VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 210 (297)
Q Consensus 167 D~a~~~g~~~~~------~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~ 210 (297)
|+..+.|..... ....+....|++++|..-.+ +..||+...+.
T Consensus 269 dEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~al-as~GgFc~G~~ 317 (467)
T KOG1358|consen 269 DESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETAL-ASGGGFCAGKS 317 (467)
T ss_pred ecccccccccccCccccccCCCCccceeeeeecccccc-cccCceeecce
Confidence 999998886641 12222336899999986665 44567776644
No 378
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=98.79 E-value=9.7e-08 Score=83.90 Aligned_cols=140 Identities=17% Similarity=0.202 Sum_probs=96.6
Q ss_pred CCccCCCchhHHHHHHHHHHHHHHHcCC--CCCCCcceEEecCChH-HHHHHHHHh-cCCCCeEEEecCCCCCccccccc
Q 022463 18 GARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQ 93 (297)
Q Consensus 18 ~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~~~~~v~~~sG~~-~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~ 93 (297)
+...|..++.+.-+++.+.+.+.+.=|. +++ .|..|+|++ +...++..+ ..+.+-|++|-.. |.
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~----dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQ--------YP 172 (475)
T KOG0258|consen 105 SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPE----DIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQ--------YP 172 (475)
T ss_pred cccccccccCChhHHHHHHHHHHhccCCCCCHH----HeeecCCCcHHHHHHHHHHhcCCCCceEeecCC--------Cc
Confidence 4566778888899998888888777663 444 499999995 443344444 3577889998743 33
Q ss_pred ccccccceeeeeeEeeecccCCC-CCcCCHHHHHHHhhh----cCCcEEEE-cCCC-CCC---cccHHHHHHHHHhcCCE
Q 022463 94 TDTKKISAVSIFFETMPYRLNES-TGYIDYDQLEKSATL----FRPKLIVA-GASA-YAR---LYDYERIRKVCNKQKAI 163 (297)
Q Consensus 94 ~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~----~~~~~v~~-~~~~-~G~---~~~~~~i~~la~~~g~~ 163 (297)
+...-+...|. ..+++-+|+. ++.+|.++|++.+.+ .+|+++++ ++-| +|. ...+++|.++|+++++.
T Consensus 173 LYsAti~l~~~--~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~ 250 (475)
T KOG0258|consen 173 LYSATISLLGG--TQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLV 250 (475)
T ss_pred hhHHHHHHhCC--cccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeE
Confidence 32222222222 2344455543 579999999998875 35776666 8888 884 45788999999999999
Q ss_pred EEEehhhh
Q 022463 164 MLADMAHI 171 (297)
Q Consensus 164 livD~a~~ 171 (297)
++.|+.+-
T Consensus 251 llaDEVYQ 258 (475)
T KOG0258|consen 251 LLADEVYQ 258 (475)
T ss_pred EechHHHH
Confidence 99999853
No 379
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.70 E-value=9.1e-07 Score=78.48 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=130.3
Q ss_pred HHHHHHcCCCCCCCcceEEe-cCChHHHHHHHHHhcC------CCC--eEEEecCCCCC-cccccccccccccceeeeee
Q 022463 37 KRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALLK------PHD--RIMALDLPHGG-HLSHGYQTDTKKISAVSIFF 106 (297)
Q Consensus 37 ~~la~~~g~~~~~~~~~v~~-~sG~~~~~~~~~~~~~------~gd--~Vl~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 106 (297)
+.+.+..+-...+ .|+| +|||.||..++....+ |-+ .++.-.+.+++ .+....... ..--+...
T Consensus 105 ~~l~~~~~~~~~~---rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~---~s~y~~~~ 178 (433)
T KOG1401|consen 105 EVLSAVLGKGSAE---RVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTG---NSKYGLPF 178 (433)
T ss_pred HHHHhcccCCCcc---EEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhc---ccccCCCC
Confidence 5555555332222 2444 7899898876654322 222 37777666444 333222111 00000001
Q ss_pred EeeecccCCCCCcCCHHHHHHHhhhcC--CcEEEEcCC-CCCCcc-----cHHHHHHHHHhcCCEEEEehhhhc-ccccc
Q 022463 107 ETMPYRLNESTGYIDYDQLEKSATLFR--PKLIVAGAS-AYARLY-----DYERIRKVCNKQKAIMLADMAHIS-GLVAA 177 (297)
Q Consensus 107 ~~v~~~~~~~~~~~d~~~l~~~l~~~~--~~~v~~~~~-~~G~~~-----~~~~i~~la~~~g~~livD~a~~~-g~~~~ 177 (297)
.++.-++- .-..-|..++++.+..++ ..+|++-|- .-|-.. -+..++++|+++|+++|.|+.+.. |-...
T Consensus 179 ~p~~p~v~-~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~ 257 (433)
T KOG1401|consen 179 DPIAPDVV-TAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGY 257 (433)
T ss_pred CCCCCcee-ecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccch
Confidence 00000000 012346899999999855 467777322 233222 245899999999999999999763 11110
Q ss_pred ----cCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhccc--CCCCCCCchHHHHHH
Q 022463 178 ----GVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVF--PGLQGGPHNHTITGL 250 (297)
Q Consensus 178 ----~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~al 250 (297)
..... ..|+.|.. |.|+|.-- |+..+++++ .+.+.+..- -+.+-+-+.+.+.+.
T Consensus 258 ~~a~e~~~~---~PDI~t~a--K~L~gGlPigA~~v~~kV--------------~~~i~~~~~l~hg~Tf~gnpLacsa~ 318 (433)
T KOG1401|consen 258 GWAQEYFGV---TPDITTVA--KPLGGGLPIGATGVRDKV--------------AEMISPGDHLYHGGTFSGNPLACSAG 318 (433)
T ss_pred HHHHHHhCc---CCcceeeh--hhccCCceeEEEeehHHH--------------HhhcCCCCccccCcccCCChhhhhHH
Confidence 01111 45877776 98877433 777777743 333332211 111223355777788
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCc
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 287 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 287 (297)
..+++.+.+.+-+.++......+++.+.+.+.+.++.
T Consensus 319 ~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~ 355 (433)
T KOG1401|consen 319 IKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNS 355 (433)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 8899999988788999999999999999999998873
No 380
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.67 E-value=3.1e-07 Score=90.64 Aligned_cols=225 Identities=16% Similarity=0.119 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCCh-HHHHHHHHHh-cC--CCCeEEEecCCCCCcccccccccccccceeeeeeEeee
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGS-PSNFQVYTAL-LK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 110 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~-~~~~~~~~~~-~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 110 (297)
-+.++++++|.+..+ -.+-.++ ++..+++++. .. ...+|+++...|+....... . .+...| ++.+
T Consensus 129 ~Qtmi~~LtGm~vaN----ASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~---t-~~~~~g--~~i~- 197 (954)
T PRK12566 129 FQQMTIDLTGLDLAN----ASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLR---T-RAEGFG--FELV- 197 (954)
T ss_pred HHHHHHHHhCchhhh----hhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHH---H-hhhcCC--cEEE-
Confidence 448999999998532 3333343 2222333333 22 25679998877766543221 1 111122 2222
Q ss_pred cccCCCCCcCCHHHHHHHhhhcCCcEEEE-cCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC-Ccc
Q 022463 111 YRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YAD 188 (297)
Q Consensus 111 ~~~~~~~~~~d~~~l~~~l~~~~~~~v~~-~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~-~~D 188 (297)
.+++++.+.+ ++..|++ .|+.+|.+.|+++|.+++|++|+++++ ++ ..+.+.+...|.+ |+|
T Consensus 198 -----------~~~~~~~~~~-~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~~-~~---d~laL~ll~~Pge~GAD 261 (954)
T PRK12566 198 -----------VDAVDNLAAH-AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALACV-AA---DLLSLLVLTPPGELGAD 261 (954)
T ss_pred -----------EcchhhcCCC-CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEEE-Ee---CHHHHhCCCChhhcCCc
Confidence 1334445554 6778888 566689999999999999999998664 33 2223333333443 899
Q ss_pred EEEecCC-----ccCCCCCceEEEEecCch--hh-c-------cCCccchh-hHHHHhhhcccCCCCCCCch-HHHHHHH
Q 022463 189 VVTTTTH-----KSLRGPRGAMIFFRKGVK--EI-N-------KQGKEVFY-DYEEKINQAVFPGLQGGPHN-HTITGLA 251 (297)
Q Consensus 189 ~~~~s~~-----K~l~gp~gG~i~~~~~~~--~~-~-------~~g~~~~~-~~~~~~~~~~~~~~~~t~~~-~~~~al~ 251 (297)
+++.+.+ -+++||..|++.++++.. +. . ..|..... .+.-+-++.+.....++.+. ..+.|+.
T Consensus 262 I~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~ 341 (954)
T PRK12566 262 VVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANI 341 (954)
T ss_pred EEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHH
Confidence 9988765 356778889999998752 11 1 11222110 01111222222222333332 2333333
Q ss_pred HHH--HHHhhhcChhhHHHHhhhhHHHHHhhccCCCCcc
Q 022463 252 VAL--KQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIE 288 (297)
Q Consensus 252 ~al--~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 288 (297)
+++ -++..+ |+.++-+++...+.+|.++|++ .+++
T Consensus 342 a~~Y~~~~Gp~-Gl~~ia~~~~~~a~~l~~~l~~-~g~~ 378 (954)
T PRK12566 342 AGFYAVYHGPE-GLKRIAQRVHRLTAILAAGLEA-KGIK 378 (954)
T ss_pred HHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHh-cCCc
Confidence 333 234445 8999999999999999999988 4443
No 381
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=98.66 E-value=1.6e-06 Score=76.71 Aligned_cols=177 Identities=19% Similarity=0.125 Sum_probs=99.9
Q ss_pred CCCCCccC-CCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHH---HHHHhc---C---------CCCeEE
Q 022463 15 GYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ---VYTALL---K---------PHDRIM 78 (297)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~---~~~~~~---~---------~gd~Vl 78 (297)
..-..|.| ++-..+.+++ +.+++++|+++++ +++..+++.++. +..+++ . +.=+.|
T Consensus 57 dG~D~RNY~G~l~Gipe~r----~l~a~llgv~~~~----viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfL 128 (425)
T PF12897_consen 57 DGTDCRNYPGGLDGIPEAR----ELFAELLGVPPEN----VIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFL 128 (425)
T ss_dssp TTEBTTSS-S-SS--HHHH----HHHHHHHTS-GGG----EEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEE
T ss_pred CCccccCCCCccCChHHHH----HHHHHHhCCCHHH----EEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEE
Confidence 34458899 7779999988 9999999999875 777666654431 222222 1 122588
Q ss_pred EecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh-cCCcEEEE--cCCC-CCCcccHHHHH
Q 022463 79 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-FRPKLIVA--GASA-YARLYDYERIR 154 (297)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~~--~~~~-~G~~~~~~~i~ 154 (297)
+|.+.|--|+.....+ | ++.++++.+ ++ ..|.|.+++.+.+ ...|.+++ ..|| +|.+..-+.+.
T Consensus 129 CPvPGYDRHFai~E~~---G-------iemi~VpM~-~d-GPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vr 196 (425)
T PF12897_consen 129 CPVPGYDRHFAITEHF---G-------IEMIPVPMT-ED-GPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVR 196 (425)
T ss_dssp EEES--HHHHHHHHHC---T--------EEEEEEEE-TT-EE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHH
T ss_pred ecCCCchHHHHHHHhh---C-------cEEEecCCC-CC-CCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHH
Confidence 9887666665544432 2 334445555 33 5799999999864 24588888 4788 89888878777
Q ss_pred HHHH----hcCCEEEEehhhhcccccccCCCCC-CC---------Ccc--EEEecCCccCCCCCc-eEEEEecC
Q 022463 155 KVCN----KQKAIMLADMAHISGLVAAGVIPSP-FE---------YAD--VVTTTTHKSLRGPRG-AMIFFRKG 211 (297)
Q Consensus 155 ~la~----~~g~~livD~a~~~g~~~~~~~~~~-~~---------~~D--~~~~s~~K~l~gp~g-G~i~~~~~ 211 (297)
++|. ..+..+++|.|+++.++..+..... .+ ..| ++..|++|--....| +++..+++
T Consensus 197 rlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~ 270 (425)
T PF12897_consen 197 RLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEA 270 (425)
T ss_dssp HHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HH
T ss_pred HHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHH
Confidence 7774 5689999999999888743222111 11 223 677899995444455 78887774
No 382
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.55 E-value=2.6e-06 Score=75.20 Aligned_cols=241 Identities=16% Similarity=0.156 Sum_probs=132.9
Q ss_pred CCccCCCchhHHHHHHHHHHHHHHHcCCC-----CCCCcceEEecCChHHHHHHHH--HhcCCCCeEEEecCCCCCcccc
Q 022463 18 GARYYGGNEYIDMAESLCQKRALEAFRLD-----PEKWGVNVQSLSGSPSNFQVYT--ALLKPHDRIMALDLPHGGHLSH 90 (297)
Q Consensus 18 ~~~~~~~~~~~~~~e~~~~~~la~~~g~~-----~~~~~~~v~~~sG~~~~~~~~~--~~~~~gd~Vl~~~~~~~~~~~~ 90 (297)
....|-+=.....+.+.+++ -+||.+ ...+ +.++..+||.|+-.+.. .-..|...|-+++.+.+.|...
T Consensus 61 ~~k~Yl~i~G~~~f~~~~~~---llFG~d~~~l~~~Rv-~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~I 136 (396)
T COG1448 61 KTKNYLPIEGLPEFLEAVQK---LLFGADSPALAEDRV-ATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAI 136 (396)
T ss_pred cccccCCcCCcHHHHHHHHH---HhcCCCcHHHHhhhH-hheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHH
Confidence 45556555556666644433 346744 1111 35667777765543332 2256777799988665555332
Q ss_pred cccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcC-CcEEEEc--CCC-CC---CcccHHHHHHHHHhcCCE
Q 022463 91 GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR-PKLIVAG--ASA-YA---RLYDYERIRKVCNKQKAI 163 (297)
Q Consensus 91 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~-~~~v~~~--~~~-~G---~~~~~~~i~~la~~~g~~ 163 (297)
.. ..|.+++..++ +|..+..+|.+.+-..|+... -.+|++| .+| || +...+++|.++.+++|.+
T Consensus 137 f~--------~aGl~v~~Y~Y-yd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~li 207 (396)
T COG1448 137 FE--------AAGLEVETYPY-YDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLI 207 (396)
T ss_pred HH--------hcCCceeeeec-cccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCe
Confidence 22 22333444554 455667799999999888633 3466664 666 77 455688999999999999
Q ss_pred EEEehhhhccccc-ccCCCCCC-----CCc-cEEEecCCccCCCCCc----eEEEEecCchhhccCCccchhhHHHHhhh
Q 022463 164 MLADMAHISGLVA-AGVIPSPF-----EYA-DVVTTTTHKSLRGPRG----AMIFFRKGVKEINKQGKEVFYDYEEKINQ 232 (297)
Q Consensus 164 livD~a~~~g~~~-~~~~~~~~-----~~~-D~~~~s~~K~l~gp~g----G~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 232 (297)
.++|-|+ -|.-. ++.....+ .+. =+++.|++|.| |..| ++.++.++..... .....+..
T Consensus 208 p~~D~AY-QGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnf-gLYgERVGa~~vva~~~~~a~--------~v~sqlk~ 277 (396)
T COG1448 208 PFFDIAY-QGFADGLEEDAYALRLFAEVGPELLVASSFSKNF-GLYGERVGALSVVAEDAEEAD--------RVLSQLKA 277 (396)
T ss_pred eeeehhh-hhhccchHHHHHHHHHHHHhCCcEEEEehhhhhh-hhhhhccceeEEEeCCHHHHH--------HHHHHHHH
Confidence 9999884 22211 11100000 011 47789999976 4333 4444444321100 01111111
Q ss_pred cccCCCCCCCchHHHHHHH-----HHHHHHhhhcChhhHHHHhhhhHHHHHhhccC
Q 022463 233 AVFPGLQGGPHNHTITGLA-----VALKQVCTLITFSHIHVFSLHVYPAFVSNQNN 283 (297)
Q Consensus 233 ~~~~~~~~t~~~~~~~al~-----~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 283 (297)
.. -...++|+..+..... ..|+...+. .++.+++++.++++.|.+.|++
T Consensus 278 ~i-R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~-El~~Mr~Ri~~mR~~lv~~L~~ 331 (396)
T COG1448 278 II-RTNYSNPPAHGAAVVATILNNPELRAEWEQ-ELEEMRQRILEMRQALVDALKA 331 (396)
T ss_pred HH-HhccCCCchhhHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 10 1113455544433222 233333334 5777888888888888888877
No 383
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.54 E-value=7.2e-06 Score=76.38 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=83.4
Q ss_pred CHHHHHHHhhh--cCCcEEEEc--CCCCCCc----ccHHHHHHHHHhcCCEEEEehhhh-cccccc----cCCCCCCCCc
Q 022463 121 DYDQLEKSATL--FRPKLIVAG--ASAYARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA----GVIPSPFEYA 187 (297)
Q Consensus 121 d~~~l~~~l~~--~~~~~v~~~--~~~~G~~----~~~~~i~~la~~~g~~livD~a~~-~g~~~~----~~~~~~~~~~ 187 (297)
|++.+++.+.+ .++.+|++. ..+-|.. ..+++|+++|++||+++|.|++++ .|-... ..... .+
T Consensus 211 ~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv---~P 287 (443)
T PRK08297 211 ALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV---RP 287 (443)
T ss_pred HHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCC---CC
Confidence 34566677753 256777773 2233433 457899999999999999999985 222211 00111 46
Q ss_pred cEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHH-HHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChhhH
Q 022463 188 DVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYE-EKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHI 266 (297)
Q Consensus 188 D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~ 266 (297)
|+++++ |.+ |.+|++..++ +. +.. ..+.....-..+.+.+...+++..++|+.+.+..-++++
T Consensus 288 Div~~g--K~l--~~~a~l~~~~-i~-----------~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~ 351 (443)
T PRK08297 288 DIVAFG--KKT--QVCGIMAGRR-VD-----------EVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENA 351 (443)
T ss_pred CEEEec--ccc--cccceecchH-HH-----------HhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999875 987 3455554332 10 011 001000000112223557777778888888765224444
Q ss_pred HHHhhhhHHHHHhhccCCCCcc-cccCC
Q 022463 267 HVFSLHVYPAFVSNQNNSENIE-EDKGR 293 (297)
Q Consensus 267 ~~~~~~l~~~l~~~l~~~~~~~-~~~g~ 293 (297)
++....+.+.+.+..++.+.+. +++|+
T Consensus 352 ~~~g~~l~~~L~~l~~~~~~~~~~vrg~ 379 (443)
T PRK08297 352 ARQGEYLLARLEELAAEFPAVVSNVRGR 379 (443)
T ss_pred HHHHHHHHHHHHHHHHHCCCcceeeecc
Confidence 4444444444444334455543 66665
No 384
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=98.51 E-value=2.3e-05 Score=67.13 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=101.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCCCCCcceEEecCChH-HHHHHHHHh---cCCCC--eEEEe-cCCCCCcccccccc
Q 022463 22 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---LKPHD--RIMAL-DLPHGGHLSHGYQT 94 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~-~~~~~~~~~---~~~gd--~Vl~~-~~~~~~~~~~~~~~ 94 (297)
|++.+....+-+...+.+.+-+|++-.. -+|..|+|++ +.+.++..+ ...|+ .|+.| ..++-+.-+....-
T Consensus 70 Y~~pQG~~~li~ala~~l~~~ygwnit~--~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~ 147 (417)
T COG3977 70 YDGPQGKAVLIDALAKMLRREYGWNITA--QNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEE 147 (417)
T ss_pred CCCCcchhHHHHHHHHHHHHHhCCCCcc--ceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCc
Confidence 4455555666666668888888886333 2699999995 555444444 23443 45554 33333332221110
Q ss_pred cccccceeeeeeEeeecccCCC---CCcCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccc---HHHHHHHHHhcCCEEEE
Q 022463 95 DTKKISAVSIFFETMPYRLNES---TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLA 166 (297)
Q Consensus 95 ~~~~~~~~g~~~~~v~~~~~~~---~~~~d~~~l~~~l~~~~~~~v~~~-~~~-~G~~~~---~~~i~~la~~~g~~liv 166 (297)
.. +...+.. + +..+. ...+|.+++. +.+ ++.+|.++ ++| +|.+.- +.++-.+|++||+++++
T Consensus 148 d~----fVs~kP~-i--el~~~g~FKY~vDF~~l~--i~e-~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliI 217 (417)
T COG3977 148 DL----FVSAKPN-I--ELLPAGQFKYHVDFEHLH--IGE-STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII 217 (417)
T ss_pred cc----eeeccCC-c--ccccccceeeccCHHHcc--ccc-ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEE
Confidence 00 0000000 0 11111 1366766654 334 78888885 888 886543 45667789999999999
Q ss_pred ehhhhcccccccCCC-CCCCCc-cEEEecCCcc-CCCCCceEEEEecCc
Q 022463 167 DMAHISGLVAAGVIP-SPFEYA-DVVTTTTHKS-LRGPRGAMIFFRKGV 212 (297)
Q Consensus 167 D~a~~~g~~~~~~~~-~~~~~~-D~~~~s~~K~-l~gp~gG~i~~~~~~ 212 (297)
|.|++..+-...+.. .++.+- =+.|+|.+|. |.|-+-|+++.+.++
T Consensus 218 DnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~v 266 (417)
T COG3977 218 DNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKV 266 (417)
T ss_pred ecccCCCCCceecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHH
Confidence 999776554332222 222232 3679999993 444444999988853
No 385
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=98.49 E-value=1.2e-05 Score=71.12 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC----CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchh
Q 022463 150 YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE----YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFY 224 (297)
Q Consensus 150 ~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~----~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~ 224 (297)
+++..++|+++|.++|.|++|+.-..- + .-|-|+ -.|+++.+ |.+++..- |++++.++
T Consensus 235 lka~~~~v~k~Ggl~IaDEVqtGfGRt-G-~~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~E------------- 297 (442)
T KOG1404|consen 235 LKAAYKVVRKRGGLFIADEVQTGFGRT-G-HMWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTPE------------- 297 (442)
T ss_pred HHHHHHHHHHcCCEEEehhhhhccccc-c-ccccccccCCCccHHHHH--hhccCCCcceeeecCHH-------------
Confidence 789999999999999999998632111 1 222221 36877766 99876544 88888884
Q ss_pred hHHHHhhhcc-cCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccC----CCCcccccCC
Q 022463 225 DYEEKINQAV-FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNN----SENIEEDKGR 293 (297)
Q Consensus 225 ~~~~~~~~~~-~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~g~ 293 (297)
..+-+.+.. .-+..++ +....++..+.|+.+.+ ++++++..+...||++.|.+ .|.|.++||+
T Consensus 298 -Ia~v~~~~~~~fnTygg-nP~a~avg~aVL~Vike----e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~ 365 (442)
T KOG1404|consen 298 -IADVLNQKSSHFNTYGG-NPVACAVGLAVLKVIKE----ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGR 365 (442)
T ss_pred -HHHHHHhccccccccCC-CchhHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccc
Confidence 444444332 1122222 22444454566766653 56788888888888777765 4569999987
No 386
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.46 E-value=2.6e-06 Score=84.24 Aligned_cols=157 Identities=13% Similarity=0.014 Sum_probs=96.4
Q ss_pred HHHHHHhhh-------cCCcEEEEcC--CCC-CCccc----HHHHHHHHHhcCCEEEEehhhhcccccccCCCCC-CC-C
Q 022463 123 DQLEKSATL-------FRPKLIVAGA--SAY-ARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-FE-Y 186 (297)
Q Consensus 123 ~~l~~~l~~-------~~~~~v~~~~--~~~-G~~~~----~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~-~~-~ 186 (297)
+.+++.|.+ .++.+|++-+ ... |...| +++++++|++||+++|.|+.++.-..-..+.... ++ .
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC
Confidence 556676652 2456666644 233 44332 6799999999999999999864211111111000 01 4
Q ss_pred ccEEEecCCccCCCCC--ceEEEEecCchhhccCCccchhhHHHHhhh-----cccCCCCCCCchHHHHHHHHHHHHHhh
Q 022463 187 ADVVTTTTHKSLRGPR--GAMIFFRKGVKEINKQGKEVFYDYEEKINQ-----AVFPGLQGGPHNHTITGLAVALKQVCT 259 (297)
Q Consensus 187 ~D~~~~s~~K~l~gp~--gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~t~~~~~~~al~~al~~~~~ 259 (297)
+|++|++ |.|+|.. -|+++++++ ..+.+.. ...-+.+.+-+...+++..++|+.+.+
T Consensus 647 PDIi~~g--KgLtgG~~Plaa~l~~~~--------------I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~ 710 (817)
T PLN02974 647 PDIACYA--KLLTGGLVPLAATLATEE--------------VFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD 710 (817)
T ss_pred CCEEeec--ccccCCCCccEEEEEcHH--------------HHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc
Confidence 7999988 9997752 378888774 3433321 011122334566888888899999987
Q ss_pred hcChhhHHHHhhhhHHHHHh----hccCCCCcccccCCCC
Q 022463 260 LITFSHIHVFSLHVYPAFVS----NQNNSENIEEDKGRPC 295 (297)
Q Consensus 260 ~~g~~~~~~~~~~l~~~l~~----~l~~~~~~~~~~g~~~ 295 (297)
+.-++++.++...+.+++.+ .+++.|.|.+++|.-+
T Consensus 711 ~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl 750 (817)
T PLN02974 711 PSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGT 750 (817)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeee
Confidence 63345666666666555544 4466788999888754
No 387
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=98.13 E-value=8.1e-05 Score=63.83 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh--cCCCCeEEEecCCCCCccccccccc----cccccee
Q 022463 29 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTD----TKKISAV 102 (297)
Q Consensus 29 ~~~e~~~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~----~~~~~~~ 102 (297)
+++-+-++...+.+-+.+ ++++.+||+.+|-.+++.. .....-|++.++.+++++....... ..+-.+.
T Consensus 86 d~lv~cA~~l~stlPeLs-----vc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~ 160 (452)
T KOG1403|consen 86 DELVQCARTLTSTLPELS-----VCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVA 160 (452)
T ss_pred HHHHHHHHHHhhcCCCce-----EEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcC
Confidence 445544444444443433 4678899998887665533 2333446677777777765432221 0111111
Q ss_pred eeee-Eeeecc--cC-------CCC---CcCCHHHHHHHhhhc--CC---cEEEE-c-CCCCCCccc----HHHHHHHHH
Q 022463 103 SIFF-ETMPYR--LN-------EST---GYIDYDQLEKSATLF--RP---KLIVA-G-ASAYARLYD----YERIRKVCN 158 (297)
Q Consensus 103 g~~~-~~v~~~--~~-------~~~---~~~d~~~l~~~l~~~--~~---~~v~~-~-~~~~G~~~~----~~~i~~la~ 158 (297)
.-.+ ...|.| +. .++ +..=.+.+++.+.+- +- .+.+. + .|.-|.+.| .+++.+..+
T Consensus 161 kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr 240 (452)
T KOG1403|consen 161 KPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVR 240 (452)
T ss_pred CCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHh
Confidence 1011 111110 00 000 111124566666541 11 22222 3 333455444 458899999
Q ss_pred hcCCEEEEehhhhcccccccCCCCCCC----CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhc
Q 022463 159 KQKAIMLADMAHISGLVAAGVIPSPFE----YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQA 233 (297)
Q Consensus 159 ~~g~~livD~a~~~g~~~~~~~~~~~~----~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (297)
.+|-.+|.|+.|. |+--.+-+-|.+. -.|+++.. |-++-..- +.+.+.+ +..+.+...
T Consensus 241 ~aGGv~IaDEVQv-GFGRvG~hyWafq~y~fiPDIVtmg--KpmGNGhPVa~Vattk--------------eIA~Af~at 303 (452)
T KOG1403|consen 241 SAGGVCIADEVQV-GFGRVGSHYWAFQTYNFIPDIVTMG--KPMGNGHPVAAVATTK--------------EIAQAFHAT 303 (452)
T ss_pred cCCCeEEeehhhh-cccccchhhhhhhhhccccchheec--ccCCCCCeeeEEeccH--------------HHHHHhccc
Confidence 9999999999973 3333333333332 35777766 76644344 7777777 344444432
Q ss_pred ---ccCCCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHH----HhhccCCCCcccccCC
Q 022463 234 ---VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAF----VSNQNNSENIEEDKGR 293 (297)
Q Consensus 234 ---~~~~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l----~~~l~~~~~~~~~~g~ 293 (297)
++....|+ ..+.+...+.++.+.++ .++++.+..-++| .+.-++.+-|.+++|.
T Consensus 304 gv~YFNTyGGn--PVsCAv~laVm~v~e~E----~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGv 364 (452)
T KOG1403|consen 304 GVEYFNTYGGN--PVSCAVGLAVMRVCEDE----NLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGV 364 (452)
T ss_pred cceehhccCCC--chhHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHhhhccceeccccc
Confidence 12111333 35555555566666544 3444444444433 3333344557887774
No 388
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=97.98 E-value=6.9e-05 Score=65.60 Aligned_cols=153 Identities=15% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCHHHHHHHhhhcC----C-cEEEEc------CCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCC---CCCCC
Q 022463 120 IDYDQLEKSATLFR----P-KLIVAG------ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI---PSPFE 185 (297)
Q Consensus 120 ~d~~~l~~~l~~~~----~-~~v~~~------~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~---~~~~~ 185 (297)
-.++++|+.|.+++ | .++++. ..|.+...-...+++++++||+.+|+|+.|..|..-.++- .|.+.
T Consensus 253 ~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 253 GCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred hHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC
Confidence 35677888887532 4 345552 2234466667899999999999999999997655433321 12222
Q ss_pred -CccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChh
Q 022463 186 -YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFS 264 (297)
Q Consensus 186 -~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~ 264 (297)
.+|+++|| |-|.. || .+.+.+++-. +-. .. +.++ .|.|.- +.-+...++.+..++-++
T Consensus 333 ~PpD~vTFS--KK~q~--gG-ffh~~~frpn---------~pY---ri-fNTW-mGdP~k--~lll~~vv~~I~~~~Ll~ 391 (484)
T KOG1405|consen 333 SPPDVVTFS--KKFQT--GG-FFHDEEFRPN---------EPY---RI-FNTW-MGDPSK--NLLLEEVVQEIKREDLLN 391 (484)
T ss_pred CCccceehh--hhhhc--Cc-cccCcccCCC---------chH---HH-hhhh-cCChHH--HHHHHHHHHHHhHHHHHH
Confidence 58999988 54432 35 4445433210 000 00 0111 344432 233455677776653344
Q ss_pred hHHHHhhhhHHHHHhhccCCCC-cccccCC
Q 022463 265 HIHVFSLHVYPAFVSNQNNSEN-IEEDKGR 293 (297)
Q Consensus 265 ~~~~~~~~l~~~l~~~l~~~~~-~~~~~g~ 293 (297)
+...-...+...|.+-.+++|+ |...+||
T Consensus 392 n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGr 421 (484)
T KOG1405|consen 392 NVAHVGKALLKGLLELQAKYPGKINNLRGR 421 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhhccccc
Confidence 4444455555566655566664 6656665
No 389
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=97.54 E-value=0.0012 Score=62.28 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=125.9
Q ss_pred HHHHHHHHcCCCCCCCcceEEecCChHHHHHHHHHh-cCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeeccc
Q 022463 35 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 113 (297)
Q Consensus 35 ~~~~la~~~g~~~~~~~~~v~~~sG~~~~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 113 (297)
-+..++++.|.+-.. .-+.--||++..+...+. ...+.+.++....|+-+++... .+ + .+..+..+
T Consensus 168 yQTmi~dlTGL~~aN---ASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~---TR-a--~~~~i~v~---- 234 (1001)
T KOG2040|consen 168 YQTMITDLTGLPMAN---ASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVK---TR-A--KGFGIKVV---- 234 (1001)
T ss_pred hHHhhhhccCCcccc---hhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhh---cc-c--cccceeEE----
Confidence 457788888887543 234456775544433333 5566668888888877765432 11 1 11112111
Q ss_pred CCCCCcCCHHHHHHHhhhcCCcEEEEcCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC-CccEEE
Q 022463 114 NESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 191 (297)
Q Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~-~~D~~~ 191 (297)
..|+++...- ..+...+++-.+. .|.+.|.+++.+.+++.|.++++- ...+.+.+...|.+ |+|+.+
T Consensus 235 -----~~~~~~~~~s--~~~v~gvlvQYP~t~G~i~d~~el~~~a~~~~s~vv~a----tDLLaLtiLrpPgefGaDIav 303 (1001)
T KOG2040|consen 235 -----VSDIKEADYS--SKDVSGVLVQYPDTEGSVLDFDELVELAHANGSLVVMA----TDLLALTILRPPGEFGADIAV 303 (1001)
T ss_pred -----ecCHHHhhcc--ccceeEEEEEcCCCCCcccCHHHHHHHhhccCceEEEe----ehhhHHHccCChhhcCceeee
Confidence 1233322221 1245666665444 699999999999999999887763 33444444444544 899999
Q ss_pred ecCCcc-----CCCCCceEEEEecCc-hhh--c-------cCCccchhhHHHHh----hhcccCCCCCCCch--HHHHHH
Q 022463 192 TTTHKS-----LRGPRGAMIFFRKGV-KEI--N-------KQGKEVFYDYEEKI----NQAVFPGLQGGPHN--HTITGL 250 (297)
Q Consensus 192 ~s~~K~-----l~gp~gG~i~~~~~~-~~~--~-------~~g~~~~~~~~~~~----~~~~~~~~~~t~~~--~~~~al 250 (297)
+|++.. .+||..||+.+++++ |+. . ..|+. .+.-.+ ++.......++.+. ..++-+
T Consensus 304 GSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~---a~RLALQTREQHIrRDKATSNICTAQALLANm 380 (1001)
T KOG2040|consen 304 GSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKE---AYRLALQTREQHIRRDKATSNICTAQALLANM 380 (1001)
T ss_pred ccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccH---HHHHHHHHHHHHhhhhccchhhhHHHHHHHHH
Confidence 999873 344555677777654 211 1 11222 121111 12221111333222 122222
Q ss_pred HHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 251 AVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 251 ~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
.+....+-...|++++.++...+...|..+|++..+
T Consensus 381 aAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~agh 416 (1001)
T KOG2040|consen 381 AAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGH 416 (1001)
T ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 222223333349999999999999999999987653
No 390
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=97.51 E-value=0.00038 Score=55.04 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=47.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHcC----CCCCCCcceEEecCChH-HHHHHHHHhcCCCCeEEEecCCC
Q 022463 22 YGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPH 84 (297)
Q Consensus 22 ~~~~~~~~~~e~~~~~~la~~~g----~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~ 84 (297)
|++.....++++.+.+++.+.+| .++++ |++++|++ ++..++.+++.|||.|+++...|
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~----Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y 151 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFDADM----IVLSAGATAANEIIMFCIADPGDAFLVPTPYY 151 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccchhh----eEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 56666788999999999999877 35554 99999995 77668888999999999998544
No 391
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00015 Score=61.17 Aligned_cols=162 Identities=15% Similarity=0.188 Sum_probs=97.2
Q ss_pred cCChHHHHHHHHHh--cCCC-CeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhcC
Q 022463 57 LSGSPSNFQVYTAL--LKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR 133 (297)
Q Consensus 57 ~sG~~~~~~~~~~~--~~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~ 133 (297)
.+|.+..+ ++.++ -+|. ..|+-+..+..+.+...+.. |.+...+.--.+.+.-.-|++.+++.+.+-.
T Consensus 84 ~tgmslsl-c~~s~r~krpkakyiiw~ridqks~~ksi~~a--------gfepiiie~i~d~d~l~tdleav~~~iee~g 154 (432)
T KOG3843|consen 84 ATGMSLSL-CFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHA--------GFEPIIIENILDGDELITDLEAVEAIIEELG 154 (432)
T ss_pred cccccHHH-HHHHHhhcCCcccEEEEEecchHHHHHHHHhc--------CCCceeeeccccchHHHHhHHHHHHHHHHhC
Confidence 45555554 55555 2343 34555555555544333322 2112222212343445778999999998767
Q ss_pred CcEEEE-c--CCCCC--CcccHHHHHHHHHhcCCEEEEehhhhccc------ccccCCCCCCCCccEEEecCCccCCCCC
Q 022463 134 PKLIVA-G--ASAYA--RLYDYERIRKVCNKQKAIMLADMAHISGL------VAAGVIPSPFEYADVVTTTTHKSLRGPR 202 (297)
Q Consensus 134 ~~~v~~-~--~~~~G--~~~~~~~i~~la~~~g~~livD~a~~~g~------~~~~~~~~~~~~~D~~~~s~~K~l~gp~ 202 (297)
+..|.+ + .+.+. ....+++|..+|..|+++-+|..|+..-. +....... .+|.++-|..|.|.-|-
T Consensus 155 ~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~g---rida~vqsldknf~vpv 231 (432)
T KOG3843|consen 155 EDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECG---RIDAFVQSLDKNFMVPV 231 (432)
T ss_pred CceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhc---cHHHHHHHhhhcceeec
Confidence 776665 3 34453 55679999999999999999988753321 11122333 68999999999999999
Q ss_pred ceEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCc
Q 022463 203 GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPH 243 (297)
Q Consensus 203 gG~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~ 243 (297)
||.++..=+. ++.+.+... +|++.+..+
T Consensus 232 ggaiia~fk~------------n~iq~iak~-ypgrasa~p 259 (432)
T KOG3843|consen 232 GGAIIAAFKD------------NFIQEIAKM-YPGRASASP 259 (432)
T ss_pred chhHhhHhHH------------HHHHHHHHh-CCCccccCc
Confidence 9777643210 455545444 577744433
No 392
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=97.38 E-value=0.0013 Score=56.24 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=86.1
Q ss_pred HhcCCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccC
Q 022463 158 NKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFP 236 (297)
Q Consensus 158 ~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (297)
.-+|..++.|.+.-.-..|+|+.. .++++...+|.+ ||.| .++++++++.-+...-.+ ...++-......
T Consensus 172 ~~~~~vlVaDmSSnflSrpvDvsk-----~gvi~aGAQKN~-G~aG~Tvvivr~dllg~~~~~tP---~v~dyk~~~~Nn 242 (370)
T KOG2790|consen 172 DPKGAVLVADMSSNFLSRPVDVSK-----FGVIFAGAQKNV-GPAGVTVVIVRKDLLGNALDITP---SVLDYKIMDKNN 242 (370)
T ss_pred CCCCceEEEecccchhcCCccchh-----cceEEecccccc-CccccEEEEEehhhhcccccCCc---cccceeeecccc
Confidence 346889999987544445555554 478899999987 8899 888888865211111111 111111111122
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhcChhhHHHHhhhhHHHHHhhccCCCCccccc
Q 022463 237 GLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDK 291 (297)
Q Consensus 237 ~~~~t~~~~~~~al~~al~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 291 (297)
+..-||+...++.+.-.++++++..|++.+++..++-.+.+++.+.+...+=..+
T Consensus 243 SlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cp 297 (370)
T KOG2790|consen 243 SLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCP 297 (370)
T ss_pred ccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcc
Confidence 3355888899999999999999998999999999999999999999886543333
No 393
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=96.23 E-value=0.037 Score=48.78 Aligned_cols=139 Identities=19% Similarity=0.277 Sum_probs=82.0
Q ss_pred eEEecCChHHHH--HHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhh
Q 022463 53 NVQSLSGSPSNF--QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 130 (297)
Q Consensus 53 ~v~~~sG~~~~~--~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~ 130 (297)
++..-|||.+.- +.+.+..-++..|.+|.++.+.+..... .+|..+....+ .++.+..+|.+.+.+.+.
T Consensus 123 tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~--------~ag~~~~~yrY-yd~~t~gld~~g~ledl~ 193 (427)
T KOG1411|consen 123 TVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFK--------DAGLPVKFYRY-YDPKTRGLDFKGMLEDLG 193 (427)
T ss_pred EEEeccCcchhhHHHHHHHhhccccceeecCCcccccCcccc--------ccCcceeeeee-ccccccccchHHHHHHHh
Confidence 455567774332 1233334467788888876555433222 22322333433 455788899998888877
Q ss_pred hcCC--cEEEEc--CCC-CC---CcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCC-----C--CCcc-EEEecC
Q 022463 131 LFRP--KLIVAG--ASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-----F--EYAD-VVTTTT 194 (297)
Q Consensus 131 ~~~~--~~v~~~--~~~-~G---~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~-----~--~~~D-~~~~s~ 194 (297)
+ .| ..|++| .+| +| +...+++|.++.++.+..-+.|.|. -|....++.... | .+-+ +++-|.
T Consensus 194 ~-~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAY-QGfaSG~~d~DA~avR~F~~~g~~~~laQSy 271 (427)
T KOG1411|consen 194 E-APEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAY-QGFASGDLDKDAQAVRLFVEDGHEILLAQSY 271 (427)
T ss_pred c-CCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhh-cccccCCchhhHHHHHHHHHcCCceEeehhh
Confidence 6 33 344443 556 65 5667889999999999999999883 333333322210 0 0223 566788
Q ss_pred CccCCCCCc
Q 022463 195 HKSLRGPRG 203 (297)
Q Consensus 195 ~K~l~gp~g 203 (297)
.|.+ |..|
T Consensus 272 AKNM-GLYg 279 (427)
T KOG1411|consen 272 AKNM-GLYG 279 (427)
T ss_pred hhhc-chhh
Confidence 8986 4333
No 394
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=96.07 E-value=0.15 Score=44.47 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=77.9
Q ss_pred EEecCChHHHHHHHH--HhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh
Q 022463 54 VQSLSGSPSNFQVYT--ALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 131 (297)
Q Consensus 54 v~~~sG~~~~~~~~~--~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~ 131 (297)
+..-|||.++..... +-.-+...|.++.++...+...+. ..| + ..+...++ +|.++-.+|++.+...|..
T Consensus 103 vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~---~aG--f--~tv~~Y~y-Wd~~~k~~d~e~~Lsdl~~ 174 (410)
T KOG1412|consen 103 VQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFE---KAG--F--TTVATYPY-WDAENKCVDLEGFLSDLES 174 (410)
T ss_pred eeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHH---HcC--C--ceeeeeee-ecCCCceecHHHHHHHHhh
Confidence 556678765543221 122345557776655444433222 111 0 11223332 4556678999999999886
Q ss_pred cCC-c-EEEEc--CCC-CC---CcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCC-------Ccc-EEEecCC
Q 022463 132 FRP-K-LIVAG--ASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-------YAD-VVTTTTH 195 (297)
Q Consensus 132 ~~~-~-~v~~~--~~~-~G---~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~-------~~D-~~~~s~~ 195 (297)
.| . .+++| .+| +| +...+.+|.+..++.+...+.|-| +-|+...++...... +.. |+|-|+.
T Consensus 175 -APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiA-YQGfASGD~~~DawAiR~fV~~g~e~fv~QSFa 252 (410)
T KOG1412|consen 175 -APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIA-YQGFASGDLDADAWAIRYFVEQGFELFVCQSFA 252 (410)
T ss_pred -CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehh-hcccccCCccccHHHHHHHHhcCCeEEEEhhhh
Confidence 55 3 33333 456 66 556678999999999999999987 344444443321110 222 6778999
Q ss_pred ccC
Q 022463 196 KSL 198 (297)
Q Consensus 196 K~l 198 (297)
|.+
T Consensus 253 KNf 255 (410)
T KOG1412|consen 253 KNF 255 (410)
T ss_pred hhc
Confidence 975
No 395
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=94.98 E-value=0.18 Score=46.62 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=95.4
Q ss_pred CcCCHHHHHHHhhh----cCCcEEEE---cCCCCCCcccHHHHHHHHHhcC-CEEEEehhhhccccccc----CCCCCCC
Q 022463 118 GYIDYDQLEKSATL----FRPKLIVA---GASAYARLYDYERIRKVCNKQK-AIMLADMAHISGLVAAG----VIPSPFE 185 (297)
Q Consensus 118 ~~~d~~~l~~~l~~----~~~~~v~~---~~~~~G~~~~~~~i~~la~~~g-~~livD~a~~~g~~~~~----~~~~~~~ 185 (297)
+++|...+++.|++ .++.++++ +.+-.|....+-+|.++|++|+ .|++.-+- +...+-.. .......
T Consensus 272 griDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi~kildi~eahakfWLHasGh-aiAALt~aepnnil~HV~e 350 (838)
T KOG0630|consen 272 GRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMILKILDICEAHAKFWLHASGH-AIAALTCAEPNNILGHVEE 350 (838)
T ss_pred ccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHHHHHHHHHHHhhheeEeeccc-hhhheeecCcccchhHHHH
Confidence 58999999999875 24556666 3445789999999999999997 78887653 22222211 1111112
Q ss_pred CccEEEecCCccCCCCCc-eEEEEecCchhhccCCccchhhHHHHhhhcccCCCCCCCchHHHHHHHHHHHHHhhhcChh
Q 022463 186 YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFS 264 (297)
Q Consensus 186 ~~D~~~~s~~K~l~gp~g-G~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~g~~ 264 (297)
..|.++....-||+-|.. -+++.++ ++ |...+ .+..... -.--+....++.+++++... .+.
T Consensus 351 qldSMal~ialWLGiPSaPiV~LHRP-le-----g~aaS-----afesdpi-----~rekLdaLp~Wta~q~LggK-aIa 413 (838)
T KOG0630|consen 351 QLDSMALNIALWLGIPSAPIVLLHRP-LE-----GSAAS-----AFESDPI-----LREKLDALPLWTALQALGGK-AIA 413 (838)
T ss_pred HHhhccchhHHHhCCCCCceEEeecc-cc-----cccch-----hcccChH-----HHHhhccchHHHHHHHhccc-HHH
Confidence 467777777779877766 3444444 11 11000 0000000 00012234677888888665 677
Q ss_pred hHHHHhhhhHHHHHhhccCCCCcccc
Q 022463 265 HIHVFSLHVYPAFVSNQNNSENIEED 290 (297)
Q Consensus 265 ~~~~~~~~l~~~l~~~l~~~~~~~~~ 290 (297)
...+....+++.+.++++..+.|+-.
T Consensus 414 dmienAFll~kilfe~aSa~~eiemi 439 (838)
T KOG0630|consen 414 DMIENAFLLCKILFEGASACEEIEMI 439 (838)
T ss_pred HHHHHHHHHHHHHHHHhhcCCceeEe
Confidence 77777888999999999999987743
No 396
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=88.47 E-value=1.6 Score=38.94 Aligned_cols=153 Identities=13% Similarity=-0.020 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHcC-CCCCCCcceEEecCChH-HHHHHHHHhcCC----C--CeEEEecCCCCCccccccccccc
Q 022463 26 EYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP-SNFQVYTALLKP----H--DRIMALDLPHGGHLSHGYQTDTK 97 (297)
Q Consensus 26 ~~~~~~e~~~~~~la~~~g-~~~~~~~~~v~~~sG~~-~~~~~~~~~~~~----g--d~Vl~~~~~~~~~~~~~~~~~~~ 97 (297)
....+|++.+|+ |-++.| +..++ =.|++++|++ +..+++.++..+ + -.|+...+=+++.......+...
T Consensus 43 f~s~eL~~~Ir~-LH~~VGNAvt~g--r~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~ 119 (363)
T PF04864_consen 43 FISPELERQIRR-LHRVVGNAVTDG--RYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSR 119 (363)
T ss_dssp TS-HHHHHHHHH-HHHHH-SB--TT--SEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BT
T ss_pred eccHHHHHHHHH-HHHHhccccccC--cEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhcccc
Confidence 345678877744 555555 33222 1599999984 655677777322 1 14555443233333333333333
Q ss_pred ccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh-cCCcEEEE--cCCC-CCCcccHHHHHHHHHhcCCEEEEehhhhcc
Q 022463 98 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-FRPKLIVA--GASA-YARLYDYERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 98 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~~--~~~~-~G~~~~~~~i~~la~~~g~~livD~a~~~g 173 (297)
..++.|-. ..+. ++ .....|=+ +|+| -|.... .+++.-+..+|.|-|+.=.
T Consensus 120 ~y~w~Gda----------~~~~----------~~~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWP 174 (363)
T PF04864_consen 120 LYKWAGDA----------SNFK----------NSDNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWP 174 (363)
T ss_dssp TEEEEEEC----------CCGT----------T-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-ST
T ss_pred CccccccH----------Hhhc----------cCCCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecc
Confidence 33333310 1110 11 12344433 4555 353321 1235556778999886432
Q ss_pred c-ccccCCCCCCCCccEEEecCCccCCCCCc---eEEEEecC
Q 022463 174 L-VAAGVIPSPFEYADVVTTTTHKSLRGPRG---AMIFFRKG 211 (297)
Q Consensus 174 ~-~~~~~~~~~~~~~D~~~~s~~K~l~gp~g---G~i~~~~~ 211 (297)
+ .|+.-.. .=|++.|+.+| +.|-.| |.-+++++
T Consensus 175 hyTpI~~~a----D~DiMLFT~SK-~TGHAGSR~GWAlVKD~ 211 (363)
T PF04864_consen 175 HYTPITAPA----DHDIMLFTLSK-LTGHAGSRFGWALVKDE 211 (363)
T ss_dssp TTS---S-B------SEEEEEHHH-HCS-GGG-EEEEEES-H
T ss_pred cccccCCCC----CCceEEEEEec-ccCccccccceeeecCH
Confidence 2 2222111 45899999999 456555 88888875
No 397
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=82.27 E-value=5.1 Score=36.55 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=35.7
Q ss_pred CHHHHHHHhhh--cCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 121 DYDQLEKSATL--FRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 121 d~~~l~~~l~~--~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
+...|-..+.+ .+.++++++.-+-|...+.+++.++|++.|+++++|
T Consensus 129 ~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 129 DENKLLEKIKNALKSFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVD 177 (467)
T ss_pred hHHHHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHcCCcEEEC
Confidence 34444444433 246788887666788999999999999999999999
No 398
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=79.56 E-value=5.4 Score=29.30 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=41.9
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
..+++++++..+.+ +|..|+++.-.+|.+.=.++..+++++.++-+++-
T Consensus 47 Hkl~~eEle~~lee-~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~ 95 (121)
T COG1504 47 HKLALEELEELLEE-GPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIEL 95 (121)
T ss_pred cccCHHHHHHHHhc-CCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEe
Confidence 58999999999998 99999986556787777789999999999888874
No 399
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=76.69 E-value=27 Score=31.61 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=40.6
Q ss_pred CCHHHHHHHhhh----cCCcEEEEc--C---C-CCC-CcccHHHHHHHHHhcCCEEEEehhhhccccc
Q 022463 120 IDYDQLEKSATL----FRPKLIVAG--A---S-AYA-RLYDYERIRKVCNKQKAIMLADMAHISGLVA 176 (297)
Q Consensus 120 ~d~~~l~~~l~~----~~~~~v~~~--~---~-~~G-~~~~~~~i~~la~~~g~~livD~a~~~g~~~ 176 (297)
.+++++..++.. .+..+++++ . . .|. ...|+..|..+-+..++++|+|.+|++|...
T Consensus 219 ~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd 286 (352)
T PRK13396 219 ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSE 286 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHH
Confidence 377777766542 345777772 1 2 233 6678899999877779999999999997544
No 400
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.54 E-value=30 Score=30.61 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=62.7
Q ss_pred EEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhhc
Q 022463 54 VQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 132 (297)
Q Consensus 54 v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~ 132 (297)
|++|.|+. .-...+..+++.|-.|++.++-..++........ .+++ .-| ..|-+.|.+.+.++
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~----------~~f~--~gD----i~D~~~L~~vf~~~ 66 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQ----------FKFY--EGD----LLDRALLTAVFEEN 66 (329)
T ss_pred EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhcc----------CceE--Eec----cccHHHHHHHHHhc
Confidence 77777874 3333677788899888887766666644332110 1112 122 45888999999988
Q ss_pred CCcEEEE--cCCCCC--CcccHH----------HHHHHHHhcCCEEEEehh
Q 022463 133 RPKLIVA--GASAYA--RLYDYE----------RIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 133 ~~~~v~~--~~~~~G--~~~~~~----------~i~~la~~~g~~livD~a 169 (297)
++.+|+- .....| ...|++ .+.+.|+++|+.=++=.+
T Consensus 67 ~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSS 117 (329)
T COG1087 67 KIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSS 117 (329)
T ss_pred CCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEec
Confidence 8877764 233345 334444 788999999987555543
No 401
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=73.25 E-value=15 Score=27.46 Aligned_cols=50 Identities=16% Similarity=0.061 Sum_probs=37.8
Q ss_pred cCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 119 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
.+++++++..+.. +|.+|+++.-..+...+-.++.+..+++|+-+.+-.+
T Consensus 45 ~l~~~~l~~ll~~-~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T 94 (117)
T cd05126 45 GLQPEELEELLEE-GVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPT 94 (117)
T ss_pred cCCHHHHHHHHhc-CCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcCh
Confidence 6889999999987 8998888533344444556888899999988777433
No 402
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=72.95 E-value=39 Score=30.71 Aligned_cols=57 Identities=14% Similarity=0.263 Sum_probs=41.2
Q ss_pred CCc-CCHHHHHHHhhh----cCCcEEEEc--CCCCC----CcccHHHHHHHHHhcCCEEEEehhhhcc
Q 022463 117 TGY-IDYDQLEKSATL----FRPKLIVAG--ASAYA----RLYDYERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 117 ~~~-~d~~~l~~~l~~----~~~~~v~~~--~~~~G----~~~~~~~i~~la~~~g~~livD~a~~~g 173 (297)
++. .++++++.++.. .++.+++++ .++|+ ...++..|..+-+.++++|++|..|+.|
T Consensus 232 ~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G 299 (360)
T PRK12595 232 RGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTG 299 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCc
Confidence 343 578888776653 245777773 34443 2358889998888899999999999877
No 403
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=72.47 E-value=44 Score=28.88 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=40.0
Q ss_pred CCHHHHHHHhhh----cCCcEEEEc--CCCC-C---CcccHHHHHHHHHhcCCEEEEehhhhcc
Q 022463 120 IDYDQLEKSATL----FRPKLIVAG--ASAY-A---RLYDYERIRKVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 120 ~d~~~l~~~l~~----~~~~~v~~~--~~~~-G---~~~~~~~i~~la~~~g~~livD~a~~~g 173 (297)
.++++++.++.. .+..+++++ .+.| + ...++..|..+.+.++++|++|..|+.|
T Consensus 143 ~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G 206 (260)
T TIGR01361 143 NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAG 206 (260)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCC
Confidence 378887776653 234677763 4456 5 3678889999988889999999999877
No 404
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=70.00 E-value=26 Score=31.22 Aligned_cols=109 Identities=14% Similarity=0.025 Sum_probs=62.2
Q ss_pred eEEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh
Q 022463 53 NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 131 (297)
Q Consensus 53 ~v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~ 131 (297)
.|++|.|+. .-......+++.|+.|++.++=..+........++ ....+..+.++..+ .-|.+.|++..+.
T Consensus 4 ~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~--l~~~~~~v~f~~~D------l~D~~~L~kvF~~ 75 (343)
T KOG1371|consen 4 HVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQ--LLGEGKSVFFVEGD------LNDAEALEKLFSE 75 (343)
T ss_pred EEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHH--hcCCCCceEEEEec------cCCHHHHHHHHhh
Confidence 477877774 22235566889999998877655555333222111 11112334344333 4488899999887
Q ss_pred cCCcEEEE--cCCCCC--CcccHH----------HHHHHHHhcCCEEEEehh
Q 022463 132 FRPKLIVA--GASAYA--RLYDYE----------RIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 132 ~~~~~v~~--~~~~~G--~~~~~~----------~i~~la~~~g~~livD~a 169 (297)
.+...|+- ..-..| ...|+. .+.+.++++|.+-+|=..
T Consensus 76 ~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~ss 127 (343)
T KOG1371|consen 76 VKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSS 127 (343)
T ss_pred cCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEec
Confidence 66655544 111122 222322 678899999988777654
No 405
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.38 E-value=62 Score=27.79 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=40.2
Q ss_pred cCCHHHHHHHhhh----cCCcEEEEc--CCCCC----CcccHHHHHHHHHhcCCEEEEehhhhccc
Q 022463 119 YIDYDQLEKSATL----FRPKLIVAG--ASAYA----RLYDYERIRKVCNKQKAIMLADMAHISGL 174 (297)
Q Consensus 119 ~~d~~~l~~~l~~----~~~~~v~~~--~~~~G----~~~~~~~i~~la~~~g~~livD~a~~~g~ 174 (297)
..++++++.++.. .+..+++++ .+.|. ...++..|..+.+..+++|++|-+|+.|.
T Consensus 132 ~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~ 197 (250)
T PRK13397 132 MATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGR 197 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcc
Confidence 5677777766553 245677774 33344 25678888888888999999999998774
No 406
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=66.29 E-value=19 Score=26.68 Aligned_cols=51 Identities=8% Similarity=-0.034 Sum_probs=37.2
Q ss_pred cCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC---CEEEEehh
Q 022463 119 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK---AIMLADMA 169 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g---~~livD~a 169 (297)
.+.++++.+.+.+.+|++|.++.+++.....+.++.+.+++.+ +.+++=+.
T Consensus 36 ~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 36 DVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 3567788888877799999997666666677788888888773 55555443
No 407
>smart00642 Aamy Alpha-amylase domain.
Probab=64.88 E-value=6 Score=31.62 Aligned_cols=27 Identities=7% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 143 AYARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 143 ~~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
.+|+..+++++.+.||++|+.|+.|.+
T Consensus 65 ~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 65 RFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 467788899999999999999999975
No 408
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=61.87 E-value=6.3 Score=37.29 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=25.8
Q ss_pred CCCCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 142 SAYARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 142 ~~~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+.+|+..+++++.+.||++|+.||+|.+
T Consensus 75 ~~fGt~~dl~~Li~~~H~~Gi~vi~D~V 102 (479)
T PRK09441 75 TKYGTKEELLNAIDALHENGIKVYADVV 102 (479)
T ss_pred cCcCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4588999999999999999999999986
No 409
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=61.61 E-value=22 Score=33.89 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=39.4
Q ss_pred cCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc--CCEEEEehhhhc
Q 022463 119 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ--KAIMLADMAHIS 172 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~--g~~livD~a~~~ 172 (297)
.++.+++.+.+.+.+|++|.++. .+.......++.+.+|+. ++.+|+=|.|+.
T Consensus 49 ~~~~~~~~~~l~~~~pdvVgis~-~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t 103 (497)
T TIGR02026 49 PLTDEKLVERLRAHCPDLVLITA-ITPAIYIACETLKFARERLPNAIIVLGGIHPT 103 (497)
T ss_pred CCCHHHHHHHHHhcCcCEEEEec-CcccHHHHHHHHHHHHHHCCCCEEEEcCCCcC
Confidence 45678888888877899999842 234445566888888887 899999877653
No 410
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=59.80 E-value=6.3 Score=34.20 Aligned_cols=29 Identities=10% Similarity=0.344 Sum_probs=25.9
Q ss_pred CCCCCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 141 ASAYARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 141 ~~~~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
.+.+|+..+++++.+.||++|+.||.|.+
T Consensus 45 d~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 45 DPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp STTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccchhhhhhhhhhccccccceEEEeee
Confidence 44578889999999999999999999976
No 411
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.88 E-value=21 Score=26.21 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=38.5
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc--CCEEEEehhh
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ--KAIMLADMAH 170 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~--g~~livD~a~ 170 (297)
.+.+++.+.+.+.+|++|.++.+.........++.+..|+. ++.+++=+.|
T Consensus 38 ~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 38 VPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp B-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred CCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 34588888888779999998654555666778888888887 7889887765
No 412
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=58.58 E-value=96 Score=28.98 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCCCcccHHHHH-HHHHhc-CCEEEEehhhhcccccccCCC
Q 022463 133 RPKLIVAGASAYARLYDYERIR-KVCNKQ-KAIMLADMAHISGLVAAGVIP 181 (297)
Q Consensus 133 ~~~~v~~~~~~~G~~~~~~~i~-~la~~~-g~~livD~a~~~g~~~~~~~~ 181 (297)
++++++|+|-.- ...-.+.+. .+++.+ =.+++||+||++..+.-++.+
T Consensus 113 ~~K~LYITPE~A-At~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRP 162 (641)
T KOG0352|consen 113 TIKMLYITPEGA-ATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRP 162 (641)
T ss_pred ceeEEEEchhhh-hhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCc
Confidence 357788743221 112233333 444443 246999999998776655433
No 413
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=56.89 E-value=14 Score=35.90 Aligned_cols=119 Identities=11% Similarity=0.045 Sum_probs=65.2
Q ss_pred hcCCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCCCCceEEEEecCchhhccCCccchhhH--------HHHh
Q 022463 159 KQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDY--------EEKI 230 (297)
Q Consensus 159 ~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~gp~gG~i~~~~~~~~~~~~g~~~~~~~--------~~~~ 230 (297)
..+-++++|++..+.+.+++.... .+|++.. ++|-+.-|.|++.+.+...+++ .|++.+..+ ...+
T Consensus 192 pe~~y~lldtaSrvSaf~Ldaesy---~f~~~~~-lltiFgyetgAvlv~~r~A~~~--Ggkt~sa~f~wp~~~l~s~~l 265 (728)
T KOG2142|consen 192 PESEYVLLDTASRVSAFPLDAESY---PFDFNPK-LLTIFGYETGAVLVMNRSAELK--GGKTASAEFSWPMLYLLSEKL 265 (728)
T ss_pred CCceEEEEEeecccccccchHhhC---CCcccch-heeecCCCchhhHHHhhhhHhh--cCccceeecccchHHHHHHHH
Confidence 457789999998888888888776 4677777 8887766776666666544433 333322110 0011
Q ss_pred hhcccCCCCCCCchHHHHHHHHHHHHHhhh-cChhhHHHHhhhhHHHHHhhccCCCC
Q 022463 231 NQAVFPGLQGGPHNHTITGLAVALKQVCTL-ITFSHIHVFSLHVYPAFVSNQNNSEN 286 (297)
Q Consensus 231 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~-~g~~~~~~~~~~l~~~l~~~l~~~~~ 286 (297)
.+... .|+.+....+.+...+....-. .++..++.+-..+++++.-.|+....
T Consensus 266 kkr~e---~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~l 319 (728)
T KOG2142|consen 266 KKRFE---DGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALAL 319 (728)
T ss_pred HHHHh---hccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhcc
Confidence 11110 2333334344443333333222 25666666666666666666655443
No 414
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=56.55 E-value=53 Score=25.27 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=34.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc---CCEEEE
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ---KAIMLA 166 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~---g~~liv 166 (297)
..++++.+++.+.++++|.++..++.....++++.+.+++. ++.+++
T Consensus 41 vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~v 90 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYV 90 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 56788888887778999999766666666777888888777 444554
No 415
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=54.54 E-value=22 Score=25.84 Aligned_cols=50 Identities=4% Similarity=0.069 Sum_probs=40.4
Q ss_pred cCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEeh
Q 022463 119 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~ 168 (297)
..++.++.+.+...-..++.+.....|-+.+..+|.++|+++|+.+..-.
T Consensus 4 ~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~ 53 (111)
T PF13378_consen 4 LFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHS 53 (111)
T ss_dssp SSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS
T ss_pred CCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecC
Confidence 35678888888874567777766668889999999999999999998876
No 416
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=53.82 E-value=63 Score=23.73 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=36.1
Q ss_pred CcCCHHHHHHHhhhcC-CcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEeh
Q 022463 118 GYIDYDQLEKSATLFR-PKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~-~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~ 168 (297)
..+++++++..+.. + |.+++++.-..+ ..+-.++.+..+++|+-+-+-.
T Consensus 37 ~~l~~~~l~~~~~~-~~peiliiGTG~~~-~~~~~~~~~~l~~~gI~vE~m~ 86 (109)
T cd00248 37 SDLDPEALLPLLAE-DRPDILLIGTGAEI-AFLPRALRAALRAAGIGVEVMS 86 (109)
T ss_pred ccCCHHHHHHHHhh-CCCCEEEEcCCCCC-CcCCHHHHHHHHHcCCeEEEeC
Confidence 36889999998876 6 899998533333 3455789999999998865543
No 417
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=53.20 E-value=48 Score=25.28 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCC---EEEEeh
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA---IMLADM 168 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~---~livD~ 168 (297)
..++.+-++..++++.+|.++.-++.....++++.+.+++.|+ ++++=+
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEEC
Confidence 4567777776666999999865556677788899999888754 455543
No 418
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=52.81 E-value=20 Score=27.14 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 124 QLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 124 ~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
.+++.+.. ++.+++++.. ..+.+++.++|++++++++.=
T Consensus 73 ~l~~l~~~-~~P~iIvt~~----~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 73 RLEKLFSY-NPPCIIVTRG----LEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHHCTT-T-S-EEEETT----T---HHHHHHHHHCT--EEEE
T ss_pred HHHHHhCC-CCCEEEEECc----CCCCHHHHHHHHHhCCcEEEc
Confidence 35555554 7777777321 266789999999999998763
No 419
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.14 E-value=63 Score=20.95 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=31.6
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
+...++++-+...+.+-+.+.++.++ ......++.+.++++|+.++.
T Consensus 13 ~~~~~~~~~~~a~~~g~~~v~iTDh~--~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 13 GALSPEELVKRAKELGLKAIAITDHG--NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeeCC--cccCHHHHHHHHHHcCCeEEE
Confidence 45677777777776578888884333 233334777888888877764
No 420
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=52.09 E-value=71 Score=24.42 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=29.9
Q ss_pred CHHHHHHHhhhcCCcEEEE--c--------CCCCC------CcccHHHHHHHHHhcCCEEEEe
Q 022463 121 DYDQLEKSATLFRPKLIVA--G--------ASAYA------RLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~--~--------~~~~G------~~~~~~~i~~la~~~g~~livD 167 (297)
|++++.+.+++-....+.+ . +|..| ....+.++.+.||+.|+.+++=
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay 63 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAY 63 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEE
Confidence 5667777776655555544 1 22222 2233589999999999887764
No 421
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=51.68 E-value=53 Score=26.99 Aligned_cols=51 Identities=6% Similarity=0.094 Sum_probs=39.6
Q ss_pred cCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC----CEEEEehh
Q 022463 119 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK----AIMLADMA 169 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g----~~livD~a 169 (297)
.++++++.+.+.+.+|++|.++.+++.....++++.+..++.+ +.+++=+.
T Consensus 119 ~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 119 DVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 4678899999888899999997666667777888888888764 56777543
No 422
>PLN00196 alpha-amylase; Provisional
Probab=51.49 E-value=12 Score=34.92 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCCCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 142 SAYARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 142 ~~~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+.+|+..+++++.+.||++|+.||.|.+
T Consensus 86 ~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 86 SKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3467777899999999999999999986
No 423
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=51.25 E-value=32 Score=29.14 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=33.7
Q ss_pred cCCHHHHHHHhh----hcCCcEEEE-cCCCCCCcccHHHHH--HHHHhcCCEEEEehhhhcc
Q 022463 119 YIDYDQLEKSAT----LFRPKLIVA-GASAYARLYDYERIR--KVCNKQKAIMLADMAHISG 173 (297)
Q Consensus 119 ~~d~~~l~~~l~----~~~~~~v~~-~~~~~G~~~~~~~i~--~la~~~g~~livD~a~~~g 173 (297)
.+.+.+++..+. ..+++++.. -.+++|+-.=+.+++ .+.++.|.++|.|++|++-
T Consensus 141 FLaPwdMknvv~K~~~~gn~~v~lcERG~sFGYnnLV~DMrsl~iM~~~~~PViFDaTHSvQ 202 (279)
T COG2877 141 FLAPWDMKNIVEKFLETGNNKVILCERGASFGYNNLVVDMRSLPIMKEFGAPVIFDATHSVQ 202 (279)
T ss_pred ccChhHhhhHHHHHHhcCCCcEEEEeccCccCcchhHHHhhhhHHHHHcCCCeEEeccccee
Confidence 344544444333 235677777 466677433333333 4678899999999998763
No 424
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=50.99 E-value=70 Score=27.08 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=35.2
Q ss_pred cCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCC-CcccHHHHHHHHH-hcCCEEEEeh
Q 022463 113 LNESTGYIDYDQLEKSATLFRPKLIVAGASAYA-RLYDYERIRKVCN-KQKAIMLADM 168 (297)
Q Consensus 113 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G-~~~~~~~i~~la~-~~g~~livD~ 168 (297)
+||+......+.++.++.. .|++|+++.| .| +...+.++.+.++ +++++++.-=
T Consensus 22 iDP~k~~~~~ei~~~~~~~-GTDaImIGGS-~gvt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 22 IDPDKTEEADEIAEAAAEA-GTDAIMIGGS-DGVTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred eCcccccccHHHHHHHHHc-CCCEEEECCc-ccccHHHHHHHHHHHHhhcCCCEEEec
Confidence 5544434455556666665 8999999432 34 3356677777777 8899988753
No 425
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=50.63 E-value=75 Score=23.33 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=37.9
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEeh-hhhccc
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM-AHISGL 174 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~-a~~~g~ 174 (297)
..++.++++..+.. +|.+++++.-..+... -.++.+.++++|+-+-+-. ..++.+
T Consensus 38 ~~l~~e~l~~l~~~-~peiliiGTG~~~~~~-~~~~~~~l~~~gi~vE~m~T~~AcrT 93 (109)
T cd05560 38 EDLTAAHFEALLAL-QPEVILLGTGERQRFP-PPALLAPLLARGIGVEVMDTQAACRT 93 (109)
T ss_pred ccCCHHHHHHHHhc-CCCEEEEecCCCCCcC-CHHHHHHHHHcCCeEEEECHHHHHHH
Confidence 36889999998887 8998888533333333 4788889999998765543 334433
No 426
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=49.99 E-value=14 Score=36.05 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=26.8
Q ss_pred cCCC-CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 140 GASA-YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 140 ~~~~-~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
.+++ ||+..+++++.+.||++|+-||+|-+
T Consensus 205 Ap~sryGtPedfk~fVD~aH~~GIgViLD~V 235 (628)
T COG0296 205 APTSRYGTPEDFKALVDAAHQAGIGVILDWV 235 (628)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 4445 89999999999999999999999976
No 427
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=49.69 E-value=50 Score=25.64 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=38.0
Q ss_pred HHHHHHhhhcCCcEEEE--cCCC-CCCcccHHHHHHHHHhcCCEEEEehhh
Q 022463 123 DQLEKSATLFRPKLIVA--GASA-YARLYDYERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 123 ~~l~~~l~~~~~~~v~~--~~~~-~G~~~~~~~i~~la~~~g~~livD~a~ 170 (297)
.++...+.+.+..+|++ .|-+ -+.-.|++.+.++|.-||+++-..-+.
T Consensus 63 qQIga~Ia~g~id~vIFf~DPl~~~phepDi~aLlRlc~v~nIP~AtN~aT 113 (143)
T TIGR00160 63 QQIGALIAEGKIDAVIFFWDPLNAQPHEPDVKALLRLCTVWNIPLATNVAT 113 (143)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCCCcCHHHHHHHHHhhCcccccCHHH
Confidence 46777777767887777 4434 578889999999999999999887663
No 428
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=49.29 E-value=53 Score=26.88 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=44.0
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCccEEEecCCc
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHK 196 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K 196 (297)
..++++++.+.. ....|.+..++-....+++++.+-.|++..+++-|.+..-..... ... |+|++..+.+=
T Consensus 52 PT~~ev~~l~~a-GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A--~~~---G~D~I~TTLsG 122 (192)
T PF04131_consen 52 PTLKEVDALAEA-GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINA--AEL---GFDIIGTTLSG 122 (192)
T ss_dssp -SHHHHHHHHHC-T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHH--HHT---T-SEEE-TTTT
T ss_pred CCHHHHHHHHHc-CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHH--HHc---CCCEEEccccc
Confidence 456788888876 889999965554444889999999999889999998632211111 112 78998877543
No 429
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=49.14 E-value=65 Score=26.44 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=40.5
Q ss_pred cCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC----CEEEEehh
Q 022463 119 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK----AIMLADMA 169 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g----~~livD~a 169 (297)
.+.++++.+.+.+.+|++|.++.+++.....++++.+.+++.+ +.+++=+.
T Consensus 121 ~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~ 175 (197)
T TIGR02370 121 DVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGA 175 (197)
T ss_pred CCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEECh
Confidence 4678999999988899999997777777777888888888874 56777554
No 430
>TIGR03586 PseI pseudaminic acid synthase.
Probab=47.79 E-value=1.8e+02 Score=26.14 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=49.7
Q ss_pred CCcCCHHHHHHHhhh----cCCcEEEEc-CCCCC---CcccHHHHHHHHHhcCCEE-EEehhhhcccccccCCCCCCCCc
Q 022463 117 TGYIDYDQLEKSATL----FRPKLIVAG-ASAYA---RLYDYERIRKVCNKQKAIM-LADMAHISGLVAAGVIPSPFEYA 187 (297)
Q Consensus 117 ~~~~d~~~l~~~l~~----~~~~~v~~~-~~~~G---~~~~~~~i~~la~~~g~~l-ivD~a~~~g~~~~~~~~~~~~~~ 187 (297)
+|.-++++++.++.- .++.++++| .++|+ ...++..|..+.++++++| ++| |+.|.... +-. -..||
T Consensus 141 tG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SD--Ht~G~~~~-~aA-va~GA 216 (327)
T TIGR03586 141 TGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSD--HTLGILAP-VAA-VALGA 216 (327)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeC--CCCchHHH-HHH-HHcCC
Confidence 445678888877652 234677764 55565 4457889999999999999 778 77664211 000 00156
Q ss_pred cEE--EecCCccCCCCCc
Q 022463 188 DVV--TTTTHKSLRGPRG 203 (297)
Q Consensus 188 D~~--~~s~~K~l~gp~g 203 (297)
+++ -++..|.+.||-.
T Consensus 217 ~iIEkH~tld~~l~G~D~ 234 (327)
T TIGR03586 217 CVIEKHFTLDRSDGGVDS 234 (327)
T ss_pred CEEEeCCChhhcCCCCCh
Confidence 644 2344466655544
No 431
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.41 E-value=62 Score=24.87 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=32.2
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCC
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 162 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~ 162 (297)
..++++-++..++++.+|.++.-++.....++++.+.+++.|+
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 4567777777666899998864455566678899999988864
No 432
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=47.32 E-value=43 Score=23.22 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=31.8
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEeh
Q 022463 122 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 122 ~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~ 168 (297)
.++..++|++.+.++|++. .+.+. .-.+.+..+|++++++++.-.
T Consensus 16 ~~~v~kai~~gkaklViiA-~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 16 TKQTVKALKRGSVKEVVVA-EDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHHcCCeeEEEEE-CCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 4567788887678888882 12222 245689999999999987654
No 433
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=47.16 E-value=17 Score=25.29 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCEEEEehh
Q 022463 151 ERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 151 ~~i~~la~~~g~~livD~a 169 (297)
++|.++|+++|++++.|-.
T Consensus 30 ~~I~~~A~e~~VPi~~~~~ 48 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPD 48 (82)
T ss_pred HHHHHHHHHcCCCEEeCHH
Confidence 5999999999999999974
No 434
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=45.97 E-value=45 Score=28.64 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=34.8
Q ss_pred CcCCHHHHHHHhhhcCCcEEEE-cCCCCC-------------CcccHHHHHHHHHhcCCEEEEehhh
Q 022463 118 GYIDYDQLEKSATLFRPKLIVA-GASAYA-------------RLYDYERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~-~~~~~G-------------~~~~~~~i~~la~~~g~~livD~a~ 170 (297)
|.-|-..|.+.+.. .+..+.+ +.+.+| -....+++.++.+++++-+++|++|
T Consensus 10 GT~Dar~la~~L~~-~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATH 75 (257)
T COG2099 10 GTSDARALAKKLAA-APVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATH 75 (257)
T ss_pred ccHHHHHHHHHhhc-cCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCC
Confidence 34466677777776 4434333 333332 2335679999999999999999987
No 435
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=45.71 E-value=55 Score=27.21 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=44.9
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCcc-cHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCccEEEecC
Q 022463 121 DYDQLEKSATLFRPKLIVAGASAYARLY-DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTT 194 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~~G~~~-~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~ 194 (297)
-++++++.+.. ...+|.+..+.-.... +++++.+-.|..|.+++.|++..-.... -+.. |+|++..+.
T Consensus 87 tlkeVd~L~~~-Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~--a~~~---G~D~IGTTL 155 (229)
T COG3010 87 TLKEVDALAEA-GADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLN--AHKL---GFDIIGTTL 155 (229)
T ss_pred cHHHHHHHHHC-CCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHH--HHHc---CCcEEeccc
Confidence 45778888876 7778888443333333 8899998888899999999873211111 1222 789887653
No 436
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=45.27 E-value=22 Score=30.55 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=48.1
Q ss_pred EEecCChH-HHHHHHHHhcCCCCeEEEecCC-CCCcccccccccccccceeeeeeEeeecccCCCCCcC-CHHHHHHHhh
Q 022463 54 VQSLSGSP-SNFQVYTALLKPHDRIMALDLP-HGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI-DYDQLEKSAT 130 (297)
Q Consensus 54 v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-d~~~l~~~l~ 130 (297)
|.+-.||+ +-. +...+.+.|. |+++..+ +++-.. ..... ..++ ..+.+ |.+.+++.|.
T Consensus 3 ILvlgGTtE~r~-la~~L~~~g~-v~~sv~t~~g~~~~--------~~~~~-----~~~v----~~G~lg~~~~l~~~l~ 63 (249)
T PF02571_consen 3 ILVLGGTTEGRK-LAERLAEAGY-VIVSVATSYGGELL--------KPELP-----GLEV----RVGRLGDEEGLAEFLR 63 (249)
T ss_pred EEEEechHHHHH-HHHHHHhcCC-EEEEEEhhhhHhhh--------ccccC-----CceE----EECCCCCHHHHHHHHH
Confidence 56667885 554 6677777887 6655321 111110 00000 0011 13456 8888888887
Q ss_pred hcCCcEEEEcCCCCCCcccH-HHHHHHHHhcCCEEEE
Q 022463 131 LFRPKLIVAGASAYARLYDY-ERIRKVCNKQKAIMLA 166 (297)
Q Consensus 131 ~~~~~~v~~~~~~~G~~~~~-~~i~~la~~~g~~liv 166 (297)
+++.++|+= .+ .+.-..+ +.+.+.|++.|++++-
T Consensus 64 ~~~i~~vID-AT-HPfA~~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 64 ENGIDAVID-AT-HPFAAEISQNAIEACRELGIPYLR 98 (249)
T ss_pred hCCCcEEEE-CC-CchHHHHHHHHHHHHhhcCcceEE
Confidence 756665552 21 2322222 3666778888877664
No 437
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=45.20 E-value=45 Score=28.60 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=39.4
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
...+++++.+.+.....++|.+.++..|-..+..++.++|+++|+.+..-
T Consensus 188 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 188 SAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 34567778777776456777777777888899999999999999988774
No 438
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=44.19 E-value=78 Score=26.37 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=39.5
Q ss_pred cCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc--CCEEEEehh
Q 022463 119 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ--KAIMLADMA 169 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~--g~~livD~a 169 (297)
.+.++++.+.+.+.+|++|.++.+.+.....++++.+..++. ++.+++=++
T Consensus 125 ~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~ 177 (213)
T cd02069 125 MVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGA 177 (213)
T ss_pred CCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEECh
Confidence 467899999998889999999766667777788888887776 466666543
No 439
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=43.83 E-value=63 Score=24.55 Aligned_cols=47 Identities=6% Similarity=0.003 Sum_probs=36.1
Q ss_pred HHHHHHhhhcCCcEEEE--cCCC-CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 123 DQLEKSATLFRPKLIVA--GASA-YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 123 ~~l~~~l~~~~~~~v~~--~~~~-~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
.++-..|.+.+..++++ .|-+ .+.-.|++.+.++|.-|++++-..-+
T Consensus 65 QQiGa~Iaeg~id~lIFf~DPLtaqPHdpDVkAL~Rl~~V~nIP~A~N~a 114 (142)
T COG1803 65 QQIGALIAEGKIDVLIFFWDPLTAQPHDPDVKALLRLATVYNIPVATNRA 114 (142)
T ss_pred HHHHHHHhcCcceEEEEEecCCCCCCCCcCHHHHHHHHHhhcccchhhHh
Confidence 46778888767777766 4433 56778899999999999999877655
No 440
>PLN02361 alpha-amylase
Probab=43.69 E-value=19 Score=33.24 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCCCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 142 SAYARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 142 ~~~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+.+|+..+++++.+.||++|+.+|.|.+
T Consensus 70 ~~~Gt~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 70 SAYGSEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 4578888999999999999999999986
No 441
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.59 E-value=66 Score=23.96 Aligned_cols=49 Identities=4% Similarity=0.024 Sum_probs=34.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc---CCEEEEeh
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ---KAIMLADM 168 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~---g~~livD~ 168 (297)
..++++.+.+.+.++++|.++.++......++++.+..++. ++.+++=+
T Consensus 37 vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 37 QTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred CCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 56677777777668999999655555566678888887777 45566544
No 442
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=43.33 E-value=49 Score=29.85 Aligned_cols=49 Identities=6% Similarity=-0.032 Sum_probs=40.6
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCC-cccHHHHHHHHHhcCCEEEEe
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYAR-LYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~-~~~~~~i~~la~~~g~~livD 167 (297)
-.+|+.-..+++.. ....+-+||-|.|. ...++++.+.|+++|+++-+=
T Consensus 87 IHFd~~lAl~a~~~-G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIG 136 (360)
T PRK00366 87 IHFDYRLALAAAEA-GADALRINPGNIGKRDERVREVVEAAKDYGIPIRIG 136 (360)
T ss_pred cCCCHHHHHHHHHh-CCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEe
Confidence 46777777777765 67888889999997 788999999999999988764
No 443
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.16 E-value=57 Score=30.25 Aligned_cols=48 Identities=8% Similarity=0.255 Sum_probs=35.4
Q ss_pred cCCHHHHHHHhhhcCCcEEEE-cCCC-C--------CCcccHH----HHHHHHHhcCCEEEE
Q 022463 119 YIDYDQLEKSATLFRPKLIVA-GASA-Y--------ARLYDYE----RIRKVCNKQKAIMLA 166 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~-~~~~-~--------G~~~~~~----~i~~la~~~g~~liv 166 (297)
..++|++.+.+.+.+|+++++ +-.. | |.+..+. ++.++||++|+.++.
T Consensus 154 Et~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 154 ETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred hcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 457899999999889999999 4211 1 4444343 788999999988765
No 444
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=43.15 E-value=57 Score=26.21 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=36.2
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCC--EEEEehhhhc
Q 022463 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA--IMLADMAHIS 172 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~--~livD~a~~~ 172 (297)
|..++++++.. ....+++- +|.+.+++++.++.+++|- ++++|-..+.
T Consensus 12 ~~~~le~~les-~~~~vflL---~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl 61 (181)
T COG1954 12 DNKDLEKALES-ESQYVFLL---TGHILNIKEIVKKLKNRGKTVFIHVDLVEGL 61 (181)
T ss_pred hHHHHHHHhcC-CCeEEEEE---echhhhHHHHHHHHHhCCcEEEEEeHHhccc
Confidence 45788888887 77777662 5778899999999999874 5677766443
No 445
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=42.77 E-value=60 Score=30.27 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=34.4
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
+++++++.+...-..++.+-++..|.+.+..++.++|+++|+.+++
T Consensus 317 ~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 317 NTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred CHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 4677777776534566666666688888899999999999987554
No 446
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=42.75 E-value=70 Score=27.24 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=31.9
Q ss_pred CcCCHHHHHHHhhh---cCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehhhhc
Q 022463 118 GYIDYDQLEKSATL---FRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 118 ~~~d~~~l~~~l~~---~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a~~~ 172 (297)
..++++.+.+++.+ .++++|+++.+|..+. +-|.++-++.|.+|+ +.-|+.
T Consensus 163 a~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~---~vi~~lE~~lGkPVl-sSNqat 216 (239)
T TIGR02990 163 ARISPDCIVEAALAAFDPDADALFLSCTALRAA---TCAQRIEQAIGKPVV-TSNQAT 216 (239)
T ss_pred eecCHHHHHHHHHHhcCCCCCEEEEeCCCchhH---HHHHHHHHHHCCCEE-EHHHHH
Confidence 46888888888763 3578888865553322 334455567788884 444443
No 447
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=42.62 E-value=1e+02 Score=25.62 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=31.0
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCC-CcccHHHHHHHHHh-cCCEEEEe
Q 022463 121 DYDQLEKSATLFRPKLIVAGASAYA-RLYDYERIRKVCNK-QKAIMLAD 167 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~~G-~~~~~~~i~~la~~-~g~~livD 167 (297)
+.+++.+.+.+..++++.++.| +| ...++.++.+.+|+ .+++++.-
T Consensus 12 ~~~~ia~~v~~~gtDaI~VGGS-~gvt~~~~~~~v~~ik~~~~lPvilf 59 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIMVGGS-LGIVESNLDQTVKKIKKITNLPVILF 59 (205)
T ss_pred HHHHHHHHHHhcCCCEEEEcCc-CCCCHHHHHHHHHHHHhhcCCCEEEE
Confidence 3444444555546899999544 44 55677888888888 68898873
No 448
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=42.22 E-value=73 Score=27.14 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=34.1
Q ss_pred HHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 127 KSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 127 ~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
+.+....+++|+++...+|...++++|..+++..++++++-
T Consensus 171 dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvG 211 (263)
T COG0434 171 DTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVG 211 (263)
T ss_pred HHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEe
Confidence 33555568899998778999999999999999889998884
No 449
>PRK10785 maltodextrin glucosidase; Provisional
Probab=41.97 E-value=20 Score=35.09 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=34.5
Q ss_pred CHHHHHHHhh---hcCCcEEEEc-----CCC--------------CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 121 DYDQLEKSAT---LFRPKLIVAG-----ASA--------------YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 121 d~~~l~~~l~---~~~~~~v~~~-----~~~--------------~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
|++-+.+.|. +-...+|.++ +++ +|+..+++++++.||++|+.||.|.+
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 6666666654 2346777773 222 23445788999999999999999986
No 450
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=41.93 E-value=1.3e+02 Score=25.34 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=33.1
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
...+.+++.+.. .|++|+++.|..-+...++++.+.+|++.++++.
T Consensus 15 ~~~~~~~~~~~~-gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvil 60 (223)
T TIGR01768 15 EADEIAKAAAES-GTDAILIGGSQGVTYEKTDTLIEALRRYGLPIIL 60 (223)
T ss_pred ccHHHHHHHHhc-CCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEE
Confidence 455666666665 8999999533323445788898999999999886
No 451
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=41.31 E-value=64 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=31.9
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 123 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 123 ~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+...++++..+.++|++. .+.+ ..-.+.+.++|+.++++++....
T Consensus 14 ~~vlkaIk~gkakLViiA-~Da~-~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 14 KQTLKAITNCNVLQVYIA-KDAE-EHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred HHHHHHHHcCCeeEEEEe-CCCC-HHHHHHHHHHHHhCCCCEEEeCC
Confidence 466777776678888882 1222 23457899999999999976654
No 452
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=40.87 E-value=73 Score=27.43 Aligned_cols=55 Identities=5% Similarity=0.154 Sum_probs=34.7
Q ss_pred CCcCCHHHHHHHh----hhcCCcEEEE-cCCCCC---CcccHHHHHHHHHhcCCEEEEehhhhc
Q 022463 117 TGYIDYDQLEKSA----TLFRPKLIVA-GASAYA---RLYDYERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 117 ~~~~d~~~l~~~l----~~~~~~~v~~-~~~~~G---~~~~~~~i~~la~~~g~~livD~a~~~ 172 (297)
...+.++++..++ ...+++++++ -...+| .+.|+..|--+ |+.+.+||+|.+|++
T Consensus 124 G~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~-k~~~~PVi~DpSHsv 186 (258)
T TIGR01362 124 GQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIM-RELGCPVIFDATHSV 186 (258)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHH-HhcCCCEEEeCCccc
Confidence 3345666554433 3346788888 222444 35677776655 445899999999984
No 453
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=40.46 E-value=29 Score=29.76 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=54.1
Q ss_pred EEecCChH-HHHHHHHHhcCCCCeEEEecCCCCCcccccccccccccceeeeeeEeeecccCCCCCcC-CHHHHHHHhhh
Q 022463 54 VQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI-DYDQLEKSATL 131 (297)
Q Consensus 54 v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-d~~~l~~~l~~ 131 (297)
|.+-.||+ +-. +...+.+.|-.|+++..+..+... ..+ + ++ ..+.+ |.+.+++.|.+
T Consensus 5 IlvlgGT~egr~-la~~L~~~g~~v~~Svat~~g~~~------~~~----------~--~v--~~G~l~~~~~l~~~l~~ 63 (248)
T PRK08057 5 ILLLGGTSEARA-LARALAAAGVDIVLSLAGRTGGPA------DLP----------G--PV--RVGGFGGAEGLAAYLRE 63 (248)
T ss_pred EEEEechHHHHH-HHHHHHhCCCeEEEEEccCCCCcc------cCC----------c--eE--EECCCCCHHHHHHHHHH
Confidence 67778885 543 555666677767765432211100 000 1 01 23567 89999999988
Q ss_pred cCCcEEEEcCCCCCCcccH-HHHHHHHHhcCCEEEEeh
Q 022463 132 FRPKLIVAGASAYARLYDY-ERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 132 ~~~~~v~~~~~~~G~~~~~-~~i~~la~~~g~~livD~ 168 (297)
++.++|+= -..+.-..+ +.+.+.|++.|++.+-=+
T Consensus 64 ~~i~~VID--ATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 64 EGIDLVID--ATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred CCCCEEEE--CCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 67777652 123433333 367788999998876543
No 454
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=40.24 E-value=50 Score=29.18 Aligned_cols=50 Identities=10% Similarity=-0.075 Sum_probs=39.3
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
...+++++++.+.....+.+.+.++..|-+.+..++..+|+++|+.++.-
T Consensus 236 ~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 236 SCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred CCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34567777777775456777777777888999999999999999988875
No 455
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=39.67 E-value=34 Score=26.81 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=27.7
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcC
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK 161 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g 161 (297)
..-|.+.|.+.|.+++|.+|.++..+.....-.+.|.++.+++.
T Consensus 48 ~~~~~~~l~~~i~~~kP~vI~v~g~~~~s~~l~~~v~~~v~~~~ 91 (150)
T PF14639_consen 48 KEEDMERLKKFIEKHKPDVIAVGGNSRESRKLYDDVRDIVEELD 91 (150)
T ss_dssp SHHHHHHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCChhHHHHHHHHHHHHHHhh
Confidence 34566778889998899999995444444444567777777764
No 456
>PRK09505 malS alpha-amylase; Reviewed
Probab=38.98 E-value=25 Score=34.97 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=22.3
Q ss_pred CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 144 YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 144 ~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+|+..+++++.+.||++|+.||+|.+
T Consensus 288 ~Gt~~dfk~Lv~~aH~~Gi~VilD~V 313 (683)
T PRK09505 288 MGTEADLRTLVDEAHQRGIRILFDVV 313 (683)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 35566788999999999999999986
No 457
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.50 E-value=37 Score=30.43 Aligned_cols=85 Identities=12% Similarity=0.161 Sum_probs=53.1
Q ss_pred CCHHHHHHHhhhcCCcEEEE-c---CCC-CCCcccHHHHHHHHHhcC------CEEEEehhhhcccccc-c-CCCCCCCC
Q 022463 120 IDYDQLEKSATLFRPKLIVA-G---ASA-YARLYDYERIRKVCNKQK------AIMLADMAHISGLVAA-G-VIPSPFEY 186 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~-~---~~~-~G~~~~~~~i~~la~~~g------~~livD~a~~~g~~~~-~-~~~~~~~~ 186 (297)
+-.+.++.+..+ +.++|++ + .+| ..-+..++.|.+++++.. ++++.|+...-..+.- . +... -+
T Consensus 209 VafDAi~~Akar-~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ea--v~ 285 (340)
T COG0552 209 VAFDAIQAAKAR-GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEA--VG 285 (340)
T ss_pred HHHHHHHHHHHc-CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHh--cC
Confidence 445677777776 8899999 2 344 456678899999998865 6677798743222210 0 0110 05
Q ss_pred ccEEEecCCccCCCCCceEEEEe
Q 022463 187 ADVVTTTTHKSLRGPRGAMIFFR 209 (297)
Q Consensus 187 ~D~~~~s~~K~l~gp~gG~i~~~ 209 (297)
.|.++.+ |.=+..+||.++.-
T Consensus 286 l~GiIlT--KlDgtAKGG~il~I 306 (340)
T COG0552 286 LDGIILT--KLDGTAKGGIILSI 306 (340)
T ss_pred CceEEEE--ecccCCCcceeeeH
Confidence 6766666 75456788777753
No 458
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=38.44 E-value=1.2e+02 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=34.8
Q ss_pred CCcCCHHHHHHHhhhc-----CCcEEEEcCCC-CC-CcccHHHHHHHHHhcCCEEEEehhh
Q 022463 117 TGYIDYDQLEKSATLF-----RPKLIVAGASA-YA-RLYDYERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 117 ~~~~d~~~l~~~l~~~-----~~~~v~~~~~~-~G-~~~~~~~i~~la~~~g~~livD~a~ 170 (297)
.-.++.++++..++.. +-.+|+++.|- -| ......++.++|++.|+.+++|...
T Consensus 108 Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 108 GPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred CCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 3456666666544421 34566664333 23 3344679999999999999999864
No 459
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.42 E-value=92 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=10.6
Q ss_pred cHHHHHHHHHhcCCEEEEehhh
Q 022463 149 DYERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 149 ~~~~i~~la~~~g~~livD~a~ 170 (297)
+.+++.++++++++.+|+|++|
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATH 75 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATH 75 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCC
Confidence 4444444444555555555444
No 460
>PRK12313 glycogen branching enzyme; Provisional
Probab=38.25 E-value=25 Score=34.59 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.4
Q ss_pred CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 144 YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 144 ~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+|+..+++++.+.||++|+.||.|.+
T Consensus 216 ~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 216 YGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34566799999999999999999976
No 461
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=38.20 E-value=1.4e+02 Score=25.36 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=34.8
Q ss_pred ccCCCCCcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 112 RLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 112 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
.+||+. ..+.+.+++.+.. .|++|+++.|.--+...+.++.+.+|+++++++.
T Consensus 13 liDP~k-~~~~~~~~~~~~~-gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvil 65 (232)
T PRK04169 13 LLDPDK-PLPDEALEAICES-GTDAIIVGGSDGVTEENVDELVKAIKEYDLPVIL 65 (232)
T ss_pred EECCCC-CCCHHHHHHHHhc-CCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEE
Confidence 355443 3344566666665 8999999433222345678888888889999886
No 462
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.20 E-value=2.4e+02 Score=23.63 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=30.6
Q ss_pred CCcCCHHHHHHHhh---hcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEeh
Q 022463 117 TGYIDYDQLEKSAT---LFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 117 ~~~~d~~~l~~~l~---~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~ 168 (297)
-+++++..+-+.-. ....++++++.+|..+ .+-|.++-++.|.+|+.-.
T Consensus 160 igr~~P~~~y~lAk~~~~~~~DaiFiSCTnlRt---~eii~~lE~~~G~PVvsSN 211 (238)
T COG3473 160 IGRQEPWAVYRLAKEVFTPDADAIFISCTNLRT---FEIIEKLERDTGVPVVSSN 211 (238)
T ss_pred hcccChHHHHHHHHHhcCCCCCeEEEEeecccc---HHHHHHHHHHhCCceeecc
Confidence 36777766544332 2256788886555433 3456677788898888753
No 463
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=38.16 E-value=57 Score=29.24 Aligned_cols=48 Identities=6% Similarity=-0.043 Sum_probs=36.5
Q ss_pred cCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 119 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
.+|+..-..++.. ....+-+||-|.|...-++++.+.|+++|+++-+=
T Consensus 80 HFd~~lAl~a~~~-g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIG 127 (346)
T TIGR00612 80 HFDYRLAALAMAK-GVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIG 127 (346)
T ss_pred CCCcHHHHHHHHh-ccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 4455444445554 67788889999999888999999999999887763
No 464
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=37.93 E-value=10 Score=32.16 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHhcCCEEEEehhhhcccccccCCCCCCCCccEEEecCCccCCC
Q 022463 147 LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 200 (297)
Q Consensus 147 ~~~~~~i~~la~~~g~~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~~K~l~g 200 (297)
..+-++|+++=.++|+-++.=+.|..|....+-.. -+.++|+++.+.+|++..
T Consensus 173 ~~~a~~iRe~e~~~~~~~~if~VHtTGis~eea~~-~~~~aDivt~CASK~ire 225 (259)
T TIGR03275 173 AEDAKAIRELESESGIDIIIFAVHTTGIDREDAEE-VVQYADIVTSCASKNIRE 225 (259)
T ss_pred HHHHHHHHHhccccCCcEEEEEEECCCCCHHHHHH-HHHhhhHHHHhchHHHHH
Confidence 34556788887788888888889988874432211 123799999999998744
No 465
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=37.76 E-value=43 Score=27.96 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCCcEEEE-cCCCCC--CcccHHHHHHHHHhcCCEEEEeh
Q 022463 122 YDQLEKSATLFRPKLIVA-GASAYA--RLYDYERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 122 ~~~l~~~l~~~~~~~v~~-~~~~~G--~~~~~~~i~~la~~~g~~livD~ 168 (297)
++.+++++.. ..+++.+ .-.... ...-.+++.++|++|++.++++.
T Consensus 24 ~~~ve~al~~-Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd 72 (211)
T COG0352 24 LEWVEAALKG-GVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIIND 72 (211)
T ss_pred HHHHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecC
Confidence 7899999987 7778887 322222 13344699999999999999875
No 466
>PRK00077 eno enolase; Provisional
Probab=37.42 E-value=90 Score=29.11 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=35.3
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
+++++++.+...-..++.+-++..|.+.+..++.++|+++|+.+++
T Consensus 316 ~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 316 NTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 5777777776634567776666688888889999999999987664
No 467
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=36.65 E-value=28 Score=33.68 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 144 YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 144 ~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+|+..+++++.+.||++|+.||.|.+
T Consensus 77 ~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 77 YGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45667799999999999999999985
No 468
>PLN00191 enolase
Probab=36.46 E-value=94 Score=29.31 Aligned_cols=48 Identities=4% Similarity=-0.030 Sum_probs=37.3
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
.+++++++.+...-...+.+-.+..|.+.+..++.++|+++|+.+++-
T Consensus 347 tn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 347 TNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred CCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 457777777776345666665666899999999999999999998873
No 469
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.27 E-value=69 Score=27.77 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=36.3
Q ss_pred CCHHHHHHHhhh----cCCcEEEEc-----CCCCC-CcccHHHHHHHHHhcCCEEEEehhhhccc
Q 022463 120 IDYDQLEKSATL----FRPKLIVAG-----ASAYA-RLYDYERIRKVCNKQKAIMLADMAHISGL 174 (297)
Q Consensus 120 ~d~~~l~~~l~~----~~~~~v~~~-----~~~~G-~~~~~~~i~~la~~~g~~livD~a~~~g~ 174 (297)
.+++++..++.. .++.+++++ .++|. ...++..|..+.+..+.+|++|..|+.|.
T Consensus 145 ~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~ 209 (266)
T PRK13398 145 ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGR 209 (266)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccc
Confidence 367777665542 245666662 23344 34566777777777799999999998863
No 470
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=35.88 E-value=30 Score=33.42 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=21.7
Q ss_pred CCcccHHHHHHHHHhcCCEEEEehh
Q 022463 145 ARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 145 G~~~~~~~i~~la~~~g~~livD~a 169 (297)
|+..+++++.+.||++|+.||.|.+
T Consensus 157 G~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 157 GGPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4555788999999999999999976
No 471
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=35.85 E-value=28 Score=33.55 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 144 YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 144 ~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+|+..+++++.+.||++|+.||.|.+
T Consensus 71 ~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 71 FGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 56777889999999999999999975
No 472
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=35.65 E-value=94 Score=28.79 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=34.9
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
+++++.+.+...-...+.+-++..|.+.+..++.++|+++|+.+++
T Consensus 316 ~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 316 NPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 5677777776534566666666678888888999999999988864
No 473
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=35.54 E-value=72 Score=22.95 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 123 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 123 ~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
|-+..++.. ..+++++ +|...|-+++.++|++.+++++.
T Consensus 52 di~~~a~~~-~i~~iIl----tg~~~~~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 52 DIQLAAIEA-GIACIIL----TGGLEPSEEVLELAKELGIPVIS 90 (105)
T ss_dssp HHHHHHCCT-TECEEEE----ETT----HHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHh-CCCEEEE----eCCCCCCHHHHHHHHHCCCEEEE
Confidence 445555554 6677777 35566778999999999988876
No 474
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=34.95 E-value=78 Score=26.26 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=28.2
Q ss_pred CHHHHHHHhhhcCCcEEEE-cCCCCC-CcccHHHHHHHHHhcCCEEEE
Q 022463 121 DYDQLEKSATLFRPKLIVA-GASAYA-RLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~-~~~~~G-~~~~~~~i~~la~~~g~~liv 166 (297)
|.+.|.++++. ...|++ .+.... ...-...+.+.|++.|+..++
T Consensus 54 ~~~~l~~al~g--~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 54 DPESLVAALKG--VDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp -HHHHHHHHTT--CSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred CHHHHHHHHcC--CceEEeecCcchhhhhhhhhhHHHhhhccccceEE
Confidence 78999999974 555555 332222 233345899999999988776
No 475
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=34.91 E-value=78 Score=27.28 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 122 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 122 ~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
.+.+++.+. +.++++++.+ .+...++.++.+.+++++.++++|..
T Consensus 83 ~~~~~~~~~--~~davvig~G-l~~~~~~~~l~~~~~~~~~pvVlDa~ 127 (272)
T TIGR00196 83 VDEDEELLE--RYDVVVIGPG-LGQDPSFKKAVEEVLELDKPVVLDAD 127 (272)
T ss_pred HHHHHhhhc--cCCEEEEcCC-CCCCHHHHHHHHHHHhcCCCEEEEhH
Confidence 445555443 4678888543 44334478899999999999999964
No 476
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=34.89 E-value=1.1e+02 Score=26.69 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCcCCHHHHHHHhh----hcCCcEEEE--cCCCCC---CcccHHHHHHHHHh-cCCEEEEehhhhcc
Q 022463 117 TGYIDYDQLEKSAT----LFRPKLIVA--GASAYA---RLYDYERIRKVCNK-QKAIMLADMAHISG 173 (297)
Q Consensus 117 ~~~~d~~~l~~~l~----~~~~~~v~~--~~~~~G---~~~~~~~i~~la~~-~g~~livD~a~~~g 173 (297)
...+.++++..++. ..+++++++ +.+ +| .+.|+..|-.+.+. -+++||+|.+|++.
T Consensus 138 Gqf~s~~e~~~aae~i~~~Gn~~vilcERG~~-fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq 203 (281)
T PRK12457 138 PQFMSPTQMKHVVSKCREAGNDRVILCERGSS-FGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQ 203 (281)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-CCCCCcccchHHHHHHHhhCCCCCEEEeCCcccc
Confidence 33456666554443 346778888 333 34 45666666655443 39999999999853
No 477
>PTZ00081 enolase; Provisional
Probab=34.84 E-value=1e+02 Score=28.97 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=34.5
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
-+++++.+.+...-...+.+-++..|.+.+..++.++|+++|+.+++
T Consensus 335 tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 335 TNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 34666666666533456666555678888889999999999988887
No 478
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=34.23 E-value=1.2e+02 Score=21.27 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCcccHHH-HHHHHHhcCCEEEEehh
Q 022463 122 YDQLEKSATLFRPKLIVAGASAYARLYDYER-IRKVCNKQKAIMLADMA 169 (297)
Q Consensus 122 ~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~-i~~la~~~g~~livD~a 169 (297)
..++.+.+...+.+++++.. .-....... +..+|++++++++.=..
T Consensus 20 ~~~v~k~l~~~~~~lvilA~--d~~~~~~~~~l~~~c~~~~Ip~~~~~s 66 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAE--DCSPDSIKKHLPALCEEKNIPYVFVPS 66 (95)
T ss_dssp HHHHHHHHHTTCESEEEEET--TSSSGHHHHHHHHHHHHTTEEEEEESH
T ss_pred hHHHHHHHHcCCCcEEEEcC--CCChhhhcccchhheeccceeEEEECC
Confidence 45677777765778888831 122334445 88999999999876543
No 479
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=34.22 E-value=1.6e+02 Score=21.79 Aligned_cols=49 Identities=12% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHhhh-cCCcEEEEcCCCCCCcccHHHHHHHHHhcC--CEEEEehhhhc
Q 022463 123 DQLEKSATL-FRPKLIVAGASAYARLYDYERIRKVCNKQK--AIMLADMAHIS 172 (297)
Q Consensus 123 ~~l~~~l~~-~~~~~v~~~~~~~G~~~~~~~i~~la~~~g--~~livD~a~~~ 172 (297)
+...+.+.. .++++|.++. .+.......++.+..|+.+ +++++=+.|..
T Consensus 28 ~~~~~~~~~~~~pdiv~~S~-~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 28 DDIVEDIKELLKPDVVGISL-MTSAIYEALELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred HHHHHHHHHhcCCCEEEEee-ccccHHHHHHHHHHHHHHCCCCEEEECCcchh
Confidence 444444443 5899998853 2333346678888888875 88888776544
No 480
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=34.02 E-value=51 Score=29.70 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHhcCCE--EEEehhhhccccc
Q 022463 148 YDYERIRKVCNKQKAI--MLADMAHISGLVA 176 (297)
Q Consensus 148 ~~~~~i~~la~~~g~~--livD~a~~~g~~~ 176 (297)
.++.++..+.++.+++ +++|+.|+.+.-.
T Consensus 239 ~di~~~~~~l~~~~lp~~vmVD~SH~ns~k~ 269 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLMIDFSHGNSNKD 269 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCcccccc
Confidence 5677777777888999 9999999876543
No 481
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=34.01 E-value=73 Score=26.28 Aligned_cols=35 Identities=3% Similarity=0.163 Sum_probs=28.5
Q ss_pred cCCcEEEEcCCC-CCCcccHHHHHHHHHhcCCEEEE
Q 022463 132 FRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 132 ~~~~~v~~~~~~-~G~~~~~~~i~~la~~~g~~liv 166 (297)
.+|..|++---| .|.....+++.++|++||++++.
T Consensus 155 l~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~it 190 (203)
T COG0108 155 LKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVIT 190 (203)
T ss_pred CCCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEE
Confidence 368888773333 79999999999999999999875
No 482
>PRK05402 glycogen branching enzyme; Provisional
Probab=33.81 E-value=32 Score=34.55 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 144 YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 144 ~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
+|+..+++++.+.||++|+.||.|.+
T Consensus 311 ~Gt~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 311 FGTPDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34566789999999999999999975
No 483
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=33.42 E-value=33 Score=33.65 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.8
Q ss_pred CCcccHHHHHHHHHhcCCEEEEehh
Q 022463 145 ARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 145 G~~~~~~~i~~la~~~g~~livD~a 169 (297)
|+..+++++.+.||++|+.||.|.+
T Consensus 203 Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 203 GTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4455789999999999999999986
No 484
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=33.42 E-value=2.2e+02 Score=24.44 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=50.4
Q ss_pred EEecCChH-HHHHHHHHhcCCCCeEEEecCC-CCCcccccccccccccceeeeeeEeeecccCCCCCcCCHHHHHHHhhh
Q 022463 54 VQSLSGSP-SNFQVYTALLKPHDRIMALDLP-HGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 131 (297)
Q Consensus 54 v~~~sG~~-~~~~~~~~~~~~gd~Vl~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~ 131 (297)
|++..||+ +.. +...+.+.|..|+++.-+ +..-. +...+ . .++ ..+.+|.+.+.+.+.+
T Consensus 3 ILvlGGT~egr~-la~~L~~~g~~v~~s~~t~~~~~~-----~~~~g-------~--~~v----~~g~l~~~~l~~~l~~ 63 (256)
T TIGR00715 3 VLLMGGTVDSRA-IAKGLIAQGIEILVTVTTSEGKHL-----YPIHQ-------A--LTV----HTGALDPQELREFLKR 63 (256)
T ss_pred EEEEechHHHHH-HHHHHHhCCCeEEEEEccCCcccc-----ccccC-------C--ceE----EECCCCHHHHHHHHHh
Confidence 67777874 443 566677778777765422 11110 00000 0 011 1246788899999988
Q ss_pred cCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 132 FRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 132 ~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
+++++|+=..+-|-... -+.+.+.|++.|++.+-
T Consensus 64 ~~i~~VIDAtHPfA~~i-s~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 64 HSIDILVDATHPFAAQI-TTNATAVCKELGIPYVR 97 (256)
T ss_pred cCCCEEEEcCCHHHHHH-HHHHHHHHHHhCCcEEE
Confidence 67887765211132111 13667888888776553
No 485
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=32.80 E-value=3.2e+02 Score=23.41 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=13.4
Q ss_pred cHHHHHHHHHhcCCEEEEehhh
Q 022463 149 DYERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 149 ~~~~i~~la~~~g~~livD~a~ 170 (297)
+.+++.++++++++.+|+|++|
T Consensus 53 ~~~~l~~~l~~~~i~~VIDATH 74 (248)
T PRK08057 53 GAEGLAAYLREEGIDLVIDATH 74 (248)
T ss_pred CHHHHHHHHHHCCCCEEEECCC
Confidence 4456666666666666666655
No 486
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=32.61 E-value=79 Score=28.41 Aligned_cols=51 Identities=4% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEeh
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~ 168 (297)
...+++++++.+.....+++.+..+..|-..+..++.++|+++|+.+++-+
T Consensus 248 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 248 NLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred ccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 345778888888764456666666667888889999999999999887754
No 487
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.58 E-value=49 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=26.8
Q ss_pred CCCCCCcccHHHHHHHHHhcCCEEEEehhhhc
Q 022463 141 ASAYARLYDYERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 141 ~~~~G~~~~~~~i~~la~~~g~~livD~a~~~ 172 (297)
+=|.|....++++..+|++.+++++.|-.|-.
T Consensus 192 lEnd~k~~sl~evL~lc~e~~iP~v~D~hHh~ 223 (312)
T TIGR00629 192 LENDDVTWTVEDLLPVCEELNIPFVLDFHHHN 223 (312)
T ss_pred eccCCCcCCHHHHHHHHHhcCCCEEEEhHHhh
Confidence 44567778899999999999999999977643
No 488
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=32.50 E-value=1.2e+02 Score=22.08 Aligned_cols=53 Identities=8% Similarity=0.057 Sum_probs=35.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhc--CCEEEEehhhhc
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ--KAIMLADMAHIS 172 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~--g~~livD~a~~~ 172 (297)
.+.+.+.+.+.+.+|++|.++.+........+.+.++.+++ ++++++=+.+..
T Consensus 37 ~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t 91 (125)
T cd02065 37 VPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPT 91 (125)
T ss_pred CCHHHHHHHHHHcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCC
Confidence 35566666776669999999644433445566777777777 488888665443
No 489
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.11 E-value=1.2e+02 Score=27.74 Aligned_cols=50 Identities=8% Similarity=0.125 Sum_probs=34.7
Q ss_pred cCCHHHHHHHhhhcCCcEEEEc---CCC-CCCcccHHHHHHHHHhcCCEEEEehh
Q 022463 119 YIDYDQLEKSATLFRPKLIVAG---ASA-YARLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 119 ~~d~~~l~~~l~~~~~~~v~~~---~~~-~G~~~~~~~i~~la~~~g~~livD~a 169 (297)
.++.++.+.++.- ..+.|.++ ..+ .+...+++.+.++++..++.||.|+.
T Consensus 244 V~~~eda~~a~~~-G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGG 297 (361)
T cd04736 244 IVTAEDAKRCIEL-GADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSG 297 (361)
T ss_pred CCCHHHHHHHHHC-CcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCC
Confidence 4566766666664 67788873 112 23445688888888888899999975
No 490
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=31.85 E-value=1.6e+02 Score=21.88 Aligned_cols=41 Identities=7% Similarity=0.016 Sum_probs=26.8
Q ss_pred HHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 125 LEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 125 l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
+-+.+.+.+..++.+...-+....| +++.++|++++++++.
T Consensus 64 ~i~~L~~~~~agL~i~~~~~~~~iP-~~~i~~A~~~~lPli~ 104 (123)
T PF07905_consen 64 FIRELAEKGAAGLGIKTGRYLDEIP-EEIIELADELGLPLIE 104 (123)
T ss_pred HHHHHHHCCCeEEEEeccCccccCC-HHHHHHHHHcCCCEEE
Confidence 3334444477888884322222333 7999999999999886
No 491
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=31.75 E-value=1e+02 Score=27.97 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=4.5
Q ss_pred CCHHHHHHHh
Q 022463 120 IDYDQLEKSA 129 (297)
Q Consensus 120 ~d~~~l~~~l 129 (297)
+..+++++.+
T Consensus 46 fs~~~l~e~i 55 (347)
T COG0826 46 FSVEDLAEAV 55 (347)
T ss_pred CCHHHHHHHH
Confidence 4444444444
No 492
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=31.70 E-value=1.1e+02 Score=27.27 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=38.0
Q ss_pred CcCCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEe
Q 022463 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 167 (297)
Q Consensus 118 ~~~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD 167 (297)
...++.++...+...-..++.+..+..|-+.+..++.++|+++|+.++.-
T Consensus 231 s~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~ 280 (324)
T TIGR01928 231 SITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIG 280 (324)
T ss_pred CcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEc
Confidence 34566677777765345667666667888888999999999999998764
No 493
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=31.69 E-value=1e+02 Score=25.70 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=35.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEeh
Q 022463 120 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 120 ~d~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~ 168 (297)
.+++++...+...-.+++.+.++..|-..+..++.++|+++|+.+..-+
T Consensus 155 ~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~ 203 (229)
T cd00308 155 TTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHG 203 (229)
T ss_pred CCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecC
Confidence 4556666666543456666666667888888999999999999888754
No 494
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=31.65 E-value=63 Score=27.92 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=33.1
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCC----CcccHHHHHHHHHhcCCEEEEehh
Q 022463 121 DYDQLEKSATLFRPKLIVAGASAYA----RLYDYERIRKVCNKQKAIMLADMA 169 (297)
Q Consensus 121 d~~~l~~~l~~~~~~~v~~~~~~~G----~~~~~~~i~~la~~~g~~livD~a 169 (297)
+.+.+++.+. +-.++++++ .-| ....+++|.++++++++++++|+-
T Consensus 91 av~~i~k~L~--RlhavVIGP-GLGRdp~~~k~i~~iley~~~~dvP~VIDaD 140 (306)
T KOG3974|consen 91 AVDIIEKLLQ--RLHAVVIGP-GLGRDPAILKEIAKILEYLRGKDVPLVIDAD 140 (306)
T ss_pred hHhHHHHHHh--heeEEEECC-CCCCCHHHHHHHHHHHHHHhcCCCcEEEcCC
Confidence 4566666665 567777742 233 445577999999999999999974
No 495
>PLN03244 alpha-amylase; Provisional
Probab=31.60 E-value=39 Score=34.05 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=25.9
Q ss_pred CCCCCcccHHHHHHHHHhcCCEEEEehhh
Q 022463 142 SAYARLYDYERIRKVCNKQKAIMLADMAH 170 (297)
Q Consensus 142 ~~~G~~~~~~~i~~la~~~g~~livD~a~ 170 (297)
+.+|+..+++++.+.||+.|+.||.|-++
T Consensus 435 sRYGTPeDLK~LVD~aH~~GI~VILDvV~ 463 (872)
T PLN03244 435 SRYGTPDDFKRLVDEAHGLGLLVFLDIVH 463 (872)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 34788889999999999999999999874
No 496
>PRK06683 hypothetical protein; Provisional
Probab=31.49 E-value=1.1e+02 Score=21.14 Aligned_cols=45 Identities=7% Similarity=-0.145 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEEeh
Q 022463 122 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 168 (297)
Q Consensus 122 ~~~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~livD~ 168 (297)
.+...+.+...+.++|++.. +.+ ..-.+.|.++|+.++++++.-.
T Consensus 16 ~~~v~kaik~gkaklViiA~-Da~-~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 16 HKRTLEAIKNGIVKEVVIAE-DAD-MRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHHHHcCCeeEEEEEC-CCC-HHHHHHHHHHHHhcCCCEEEEC
Confidence 35667777766889998821 111 1135688999999999987654
No 497
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=31.30 E-value=50 Score=23.69 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=28.1
Q ss_pred CCHHHHHHHhhh--------cCCcEEEEcCCCCCCcccHHHHHHHHHhcCCE
Q 022463 120 IDYDQLEKSATL--------FRPKLIVAGASAYARLYDYERIRKVCNKQKAI 163 (297)
Q Consensus 120 ~d~~~l~~~l~~--------~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~ 163 (297)
.|++++.+.+++ ++-.-+++..++.....++.++.++++++|+.
T Consensus 23 ~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~l~~~~dl~~L~~~l~~~gl~ 74 (99)
T PF05209_consen 23 ADLDELLQALDEKIAQAPDFFKNAPVVLDLSNLPDELDLAALVELLRRHGLR 74 (99)
T ss_dssp S-HHHHHHHHHHHHHHTHHHCTTTEEEEEEEEEETTHHHHHHHHHHHCCCHC
T ss_pred CCHHHHHHHHHHHHHhChHhHcCCCeEEehhhcCChhhHHHHHHHHHHcCCE
Confidence 478888887765 12223444333335556888999999999865
No 498
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.27 E-value=1.7e+02 Score=25.69 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=35.9
Q ss_pred CCCcCCHHHHHHHhh----hcCCcEEEEc-CCCCC---CcccHHHHHHHHHhcCCEEEEehhhhc
Q 022463 116 STGYIDYDQLEKSAT----LFRPKLIVAG-ASAYA---RLYDYERIRKVCNKQKAIMLADMAHIS 172 (297)
Q Consensus 116 ~~~~~d~~~l~~~l~----~~~~~~v~~~-~~~~G---~~~~~~~i~~la~~~g~~livD~a~~~ 172 (297)
.....+++++..++. ..+.+++++. ...+| .+.|+..+--+ ++.+.+||+|.+|++
T Consensus 137 kGq~~t~~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~m-k~~~lPVI~DpSHsv 200 (290)
T PLN03033 137 KGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM-REANCPVVADITHSL 200 (290)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHH-HhcCCCEEEeCCccc
Confidence 344567777665544 2356788872 22444 34677666544 468999999999974
No 499
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=31.13 E-value=3.5e+02 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=17.1
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCEEE
Q 022463 140 GASAYARLYDYERIRKVCNKQKAIML 165 (297)
Q Consensus 140 ~~~~~G~~~~~~~i~~la~~~g~~li 165 (297)
+++.......++.+.+.++++|+.++
T Consensus 139 ~~~~~~~~~~~~~~~~~a~~~g~~l~ 164 (294)
T PF04392_consen 139 DPSEPNSVAQIEQLRKAAKKLGIELV 164 (294)
T ss_dssp ETT-HHHHHHHHHHHHHHHHTT-EEE
T ss_pred cCCCccHHHHHHHHHHHHHHcCCEEE
Confidence 44433345667889999999998765
No 500
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.67 E-value=1.1e+02 Score=21.67 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCcEEEEcCCCCCCcccHHHHHHHHHhcCCEEEE
Q 022463 124 QLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 166 (297)
Q Consensus 124 ~l~~~l~~~~~~~v~~~~~~~G~~~~~~~i~~la~~~g~~liv 166 (297)
.++..+. ++++|++ .+++-.=.-...+.+.|+++|++++.
T Consensus 41 ~l~~~i~--~aD~VIv-~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 41 RLPSKIK--KADLVIV-FTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred HHHHhcC--CCCEEEE-EeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 4777775 5788887 11221112245888999999999776
Done!