RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022463
(297 letters)
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism;
HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP:
c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A*
1bj4_A* 1eji_A*
Length = 483
Score = 525 bits (1354), Expect = 0.0
Identities = 171/260 (65%), Positives = 210/260 (80%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYS GYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGS
Sbjct: 61 LEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 120
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYI
Sbjct: 121 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI 180
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+
Sbjct: 181 DYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV 240
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQ
Sbjct: 241 PSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQ 300
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I G+AVALKQ T
Sbjct: 301 GGPHNHAIAGVAVALKQAMT 320
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural
genomics consortium, SGC; 2.04A {Homo sapiens} SCOP:
c.67.1.4 PDB: 3ou5_A
Length = 490
Score = 524 bits (1353), Expect = 0.0
Identities = 178/260 (68%), Positives = 215/260 (82%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYSEGYPG RYYGG E +D E LCQ+RALEAF LDP +WGVNVQ SGS
Sbjct: 71 LEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 130
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+N VYTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN TG I
Sbjct: 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 190
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DY+QL +A LFRP+LI+AG SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VI
Sbjct: 191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI 250
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPF++AD+VTTTTHK+LRG R +IF+RKGVK ++ K G+E+ Y +E++IN AVFP LQ
Sbjct: 251 PSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I +AVALKQ CT
Sbjct: 311 GGPHNHAIAAVAVALKQACT 330
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A*
1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A*
2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A*
2vgv_A* 2vgw_A* ...
Length = 405
Score = 329 bits (847), Expect = e-112
Identities = 113/258 (43%), Positives = 161/258 (62%), Gaps = 29/258 (11%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F + NVQ SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE----HANVQPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNEST 117
+N VY +L+ D ++ ++L HGGHL+HG S V+ + + Y ++ T
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG--------SPVNFSGVQYNFVAYGVDPET 147
Query: 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177
IDYD + + A L RPKLIVA A+AY R+ D+ + R++ ++ A ++ DMAHI+GLVAA
Sbjct: 148 HVIDYDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA 207
Query: 178 GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG 237
G+ P+P YA VTTTTHK+LRGPRG MI ++ + ++I++A+FPG
Sbjct: 208 GLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKAIFPG 253
Query: 238 LQGGPHNHTITGLAVALK 255
+QGGP H I AVA
Sbjct: 254 IQGGPLMHVIAAKAVAFG 271
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011,
serine hydroxymethyltransfera salmonella typhimurium.;
HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A*
3g8m_A* 1eqb_A*
Length = 420
Score = 328 bits (843), Expect = e-111
Identities = 122/258 (47%), Positives = 164/258 (63%), Gaps = 27/258 (10%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
MQA GS +TNKY+EGYPG RYYGG EY+D+ E L RA E F D NVQ SGS
Sbjct: 47 MQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGS 102
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNEST 117
+NF VYTALL+P D ++ ++L GGHL+HG S V+ + +PY ++E +
Sbjct: 103 QANFAVYTALLQPGDTVLGMNLAQGGHLTHG--------SPVNFSGKLYNIVPYGIDE-S 153
Query: 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177
G IDYD++ K A +PK+I+ G SAY+ + D+ ++R++ + A + DMAH++GL+AA
Sbjct: 154 GKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAA 213
Query: 178 GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG 237
GV P+P +A VVTTTTHK+L GPRG +I + G +E+ K K+N AVFP
Sbjct: 214 GVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGDEELYK-----------KLNSAVFPS 262
Query: 238 LQGGPHNHTITGLAVALK 255
QGGP H I G AVALK
Sbjct: 263 AQGGPLMHVIAGKAVALK 280
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural
genomics; HET: PLP; 1.15A {Thermus thermophilus}
Length = 407
Score = 326 bits (839), Expect = e-111
Identities = 115/258 (44%), Positives = 157/258 (60%), Gaps = 28/258 (10%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
+AVGSV+TNKY+EGYPGARYYGG E ID ESL +RA F NVQ SGS
Sbjct: 40 REAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA----WANVQPHSGS 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNEST 117
+N VY AL++P D +M +DL GGHL+HG S V+ ++ + Y + T
Sbjct: 96 QANMAVYMALMEPGDTLMGMDLAAGGHLTHG--------SRVNFSGKLYKVVSYGVRPDT 147
Query: 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177
ID +++ + A RPK+IVAGASAY R +D++ R++ ++ A ++ DMAH +GLVAA
Sbjct: 148 ELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAA 207
Query: 178 GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG 237
G+ P+P YA VVT+TTHK+LRGPRG +I + ++I++ +FPG
Sbjct: 208 GLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDP-------------ELGKRIDKLIFPG 254
Query: 238 LQGGPHNHTITGLAVALK 255
+QGGP H I G AVA
Sbjct: 255 IQGGPLEHVIAGKAVAFF 272
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
Length = 447
Score = 325 bits (836), Expect = e-110
Identities = 112/258 (43%), Positives = 154/258 (59%), Gaps = 29/258 (11%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
+QA GSV+TNKY+EG PG RYYGG E++D+ E+L + RA F + NVQ SG+
Sbjct: 62 LQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGA 117
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNEST 117
+N V AL+ P +R++ LDL +GGHL+HG ++ +E Y ++ +T
Sbjct: 118 QANAAVLHALMSPGERLLGLDLANGGHLTHG--------MRLNFSGKLYENGFYGVDPAT 169
Query: 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177
ID D + +A FRPK+I+AG SAY R+ D+ R + ++ A +L DMAH +GLVAA
Sbjct: 170 HLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAA 229
Query: 178 GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG 237
G+ PSP +ADVV+TT HK+L G R +I ++ Y + IN AVFPG
Sbjct: 230 GLHPSPVPHADVVSTTVHKTLGGGRSGLIVGKQ--------------QYAKAINSAVFPG 275
Query: 238 LQGGPHNHTITGLAVALK 255
QGGP H I G AVALK
Sbjct: 276 QQGGPLMHVIAGKAVALK 293
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A,
one-carbon metabolism, pyridoxa phosphate, structural
genomics; 1.60A {Burkholderia pseudomallei}
Length = 425
Score = 324 bits (832), Expect = e-110
Identities = 110/258 (42%), Positives = 147/258 (56%), Gaps = 28/258 (10%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
+ A GSV+TNKY+EGYPG RYYGG E+ D E+L +R F NVQ SG+
Sbjct: 49 LDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG----HANVQPHSGA 104
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNEST 117
+N V AL KP D ++ + L GGHL+HG + ++ +F + Y ++ T
Sbjct: 105 QANGAVMLALAKPGDTVLGMSLDAGGHLTHG--------AKPALSGKWFNALQYGVSRDT 156
Query: 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177
IDYDQ+E A +P LI+AG SAY R D+ R R + + A ++ DMAHI+G++AA
Sbjct: 157 MLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAA 216
Query: 178 GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG 237
G +P E+A VVT+TTHK+LRGPRG + + +KIN AVFPG
Sbjct: 217 GRHANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE-------------EIAKKINSAVFPG 263
Query: 238 LQGGPHNHTITGLAVALK 255
LQGGP H I G AVA
Sbjct: 264 LQGGPLMHVIAGKAVAFG 281
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA)
sandwich, CSGI transferase, structural genomics; HET:
MSE; 1.80A {Campylobacter jejuni}
Length = 417
Score = 320 bits (823), Expect = e-109
Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 29/258 (11%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+ +GS++TNKY+EGYPG RYYGG E++D E+L +R + F NVQ SGS
Sbjct: 42 MEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGS 97
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNEST 117
+N VY AL+ P D+I+ +DL HGGHL+HG + VS +E+ Y +
Sbjct: 98 QANQGVYAALINPGDKILGMDLSHGGHLTHG--------AKVSSSGKMYESCFYGVEL-D 148
Query: 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177
G IDY+++ + A +PKLIV GASAYAR+ D+ + R++ ++ A + AD+AHI+GLV A
Sbjct: 149 GRIDYEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVA 208
Query: 178 GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPG 237
G PSPF YA VV++TTHK+LRGPRG +I + +KIN A+FPG
Sbjct: 209 GEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTNDE-------------ELAKKINSAIFPG 255
Query: 238 LQGGPHNHTITGLAVALK 255
+QGGP H I AV K
Sbjct: 256 IQGGPLMHVIAAKAVGFK 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 2e-06
Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 81/214 (37%)
Query: 112 RLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK----QKAIMLAD 167
R+ E+ + ++ + I + ++ Y + + + + Q A+ L +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEK--IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 168 MA-------------------H----ISGLVA-AGVIPSPFEYADVVTTTTHKSLRG--- 200
A H + L + A V+ E +V RG
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM--SIE--SLVEVV---FYRGMTM 1793
Query: 201 ----PRG-------AMI--------------FFRKGVKEINKQGKEVFYDYEEKINQAV- 234
PR MI + V+ + K+ + + V
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV--------EIVN 1845
Query: 235 --FPGLQGGPHNHTITGLAVALKQVCTLITFSHI 266
Q + G AL V ++ F +
Sbjct: 1846 YNVENQQ-----YVAAGDLRALDTVTNVLNFIKL 1874
Score = 41.6 bits (97), Expect = 3e-04
Identities = 42/283 (14%), Positives = 80/283 (28%), Gaps = 83/283 (29%)
Query: 19 ARYY---GG----NEYIDMAESLCQKRAL-EAFR--LDP--EKWGVNVQSLSGSPSN--- 63
A+ GG ++Y + E L R L + + + + + L + +
Sbjct: 154 AQLVAIFGGQGNTDDYFE--E-L---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 64 -----FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS---IF------FETM 109
+ L P + P +L +S I +
Sbjct: 208 VFTQGLNILEWLENPSNT------PDKDYLLS---------IPISCPLIGVIQLAHYVVT 252
Query: 110 PYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYD--YERIRKVCNKQKAIMLAD 167
L + G + L K AT L+ A A A ++ + + +KAI +
Sbjct: 253 AKLLGFTPGEL-RSYL-KGATGHSQGLVTAVAIAETDSWESFFV------SVRKAITV-- 302
Query: 168 MAHISGLVAAGVIP----SPFEYADVV----TTTTHK-SLRGPRGAMIFFRKGVKEINKQ 218
+ I G+ P P D + + S+ + V + N
Sbjct: 303 LFFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ--DYVNKTNSH 359
Query: 219 GKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 261
+ V L G N ++G +L + +
Sbjct: 360 LPA---------GKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 40.5 bits (94), Expect = 4e-04
Identities = 32/236 (13%), Positives = 62/236 (26%), Gaps = 50/236 (21%)
Query: 5 GSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVN--VQSLSGSPS 62
++ +++ G Y G+E E + E +G V + G +
Sbjct: 54 NAMSDKQWAGMMMGDEAYAGSENFYHLE--------RTVQ---ELFGFKHIVPTHQGRGA 102
Query: 63 NFQVYTALLKPHDRIMA---LDLPHGGHLSHGYQTDTKKISAVSIFFETM--PYRLNEST 117
+ +KP + +G V I +
Sbjct: 103 ENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNG-------AVFVDIVRDEAHDAGLNIAFK 155
Query: 118 GYIDYDQLEKSATLFRPKLI----------VAGASAYARLYDYERIRKVCNKQKAIMLAD 167
G ID +L+K + I +AG + + + +R++ + D
Sbjct: 156 GDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVS-MANMRAVRELTEAHGIKVFYD 214
Query: 168 MAHISG--------------LVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 209
A ++ F YAD T + K G +
Sbjct: 215 ATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMN 270
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 39.0 bits (90), Expect = 0.002
Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 29/181 (16%)
Query: 58 SGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI----SAVSIFFETM--PY 111
G + ++ LLK + P H T A++I E
Sbjct: 99 QGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSE 158
Query: 112 RLNESTGYIDYDQLE---KSATLFRPKLIVAGASAYAR------LYDYERIRKVCNKQKA 162
++ G D +L+ IV+ + + + + + + ++ +
Sbjct: 159 TYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI 218
Query: 163 IMLADMAHI--------------SGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 208
++ D A VI ++YAD +T + K G ++
Sbjct: 219 FVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAI 278
Query: 209 R 209
R
Sbjct: 279 R 279
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 37.1 bits (86), Expect = 0.005
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 144 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEY-ADVVTTTTHKSLRGPR 202
Y ++ E + K ++ +L D AH + G S Y AD V + HK+L
Sbjct: 158 YGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALT 217
Query: 203 -GAMIFFRKG 211
G++++ K
Sbjct: 218 MGSVLYIHKN 227
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 37.0 bits (85), Expect = 0.006
Identities = 41/221 (18%), Positives = 62/221 (28%), Gaps = 40/221 (18%)
Query: 36 QKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLS--HG-Y 92
+K A F D V S SN + A + +D ++ + H S G
Sbjct: 211 EKYAARVFGADRSWSVVV----GTSGSNRTIMQACMTDNDVVV---VDRNCHKSIEQGLM 263
Query: 93 QTDTK------KISAVSIFFETMPYRLNEST--GYIDYDQLEKSATLFRPKLIVAGASAY 144
T K + I P + T I L K +P V Y
Sbjct: 264 LTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY 323
Query: 145 ARL-YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS----------PFEYADVVTTT 193
+ Y+ + + + K + D A + T +
Sbjct: 324 DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHS 383
Query: 194 THKSLRGPR-GAMIFFRKGVKEINKQGKEVFYDYEEKINQA 233
THK L + I R+G IN + NQA
Sbjct: 384 THKLLNALSQASYIHVREGRGAIN----------FSRFNQA 414
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 35.6 bits (83), Expect = 0.013
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 115 ESTGYIDYDQLEKSATLFRPKLIV----AGASAYARLYDYERIRKVCNKQKAIMLADMAH 170
++ G ID LEK R K IV AG S + E ++K+C K L+D +H
Sbjct: 104 KNDGNIDELALEKLIN-ERTKAIVSVDYAGKSV-----EVESVQKLCKKHSLSFLSDSSH 157
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 33.7 bits (78), Expect = 0.060
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 26/124 (20%)
Query: 147 LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLRGPRG- 203
LYD I + C K + D +S P ADV+ T + K L P G
Sbjct: 160 LYDTMMIGEFCKKNNMFFVCDC--VSAF---LADPFNMNECGADVMITGSQKVLACPPGI 214
Query: 204 AMIFFRKGVKEINKQGKEV-----FYDYEEKINQAVFPGLQGGPHNHT-----ITGLAVA 253
++I E ++ K D + + P T + +
Sbjct: 215 SVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTP--------FTPAVGILLQINER 266
Query: 254 LKQV 257
LK++
Sbjct: 267 LKEI 270
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 33.1 bits (75), Expect = 0.098
Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 17/126 (13%)
Query: 120 IDYDQLEKSATLFRPKLIVAGASAYARL-YDYERIRKVCNKQKAIMLADMAHISGLVAAG 178
E++ +L V Y Y+ + K + D A +
Sbjct: 268 AAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIP 327
Query: 179 VIPSPF----------EYADVVTTTTHKSLRGPR-GAMIFFRKGVKEINKQGKEVFYDYE 227
++ + + +V + HK G + I + + ++ Y
Sbjct: 328 MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKD-----SHIKGQLRYCDH 382
Query: 228 EKINQA 233
+ N +
Sbjct: 383 KHFNNS 388
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 32.9 bits (76), Expect = 0.10
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 114 NESTGYIDYDQLEKSATLFRPKLIV----AGASAYARLYDYERIRKVCNKQKAIMLADMA 169
+ T + + +E + T + K I+ AGA A D + I + + ++ D A
Sbjct: 109 DRDTLMVTPEHIEAAIT-PQTKAIIPVHYAGAPA-----DLDAIYALGERYGIPVIEDAA 162
Query: 170 H 170
H
Sbjct: 163 H 163
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 32.3 bits (73), Expect = 0.18
Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 35/200 (17%)
Query: 36 QKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLS--HG-Y 92
++ F D N S +N V I+ + H S H
Sbjct: 201 EQYIARVFNADRSYMVTN----GTSTANKIVGMYSAPAGSTIL---IDRNCHKSLTHLMM 253
Query: 93 QTDTKKISAVSIFFET--------MPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 144
+D I+F +E +++++ P V S Y
Sbjct: 254 MSD-----VTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY 308
Query: 145 ARL-YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--------PFEYADVVTTTTH 195
L Y+ + I+K + + + D A + + + T +TH
Sbjct: 309 DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTH 366
Query: 196 KSLRGPR-GAMIFFRKGVKE 214
K L +MI + V E
Sbjct: 367 KLLAAFSQASMIHVKGDVNE 386
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 32.3 bits (73), Expect = 0.19
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 123 DQLEKSATLFRPKLIVAGASAYA-RLYD-YERIRKVCNKQKAIMLADMAH-ISGLVAAGV 179
+ ++K L +++ + + R D I K+C + + A+ I
Sbjct: 221 NAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEK 280
Query: 180 IPSPF-EYADVVTTTTHKSLRGPRGAMIFFRK 210
+ F D V +++ K+L P G + +
Sbjct: 281 LKKAFKYRVDAVVSSSDKNLLTPIGGGLVYST 312
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 31.6 bits (72), Expect = 0.31
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 146 RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAM 205
++D + + + ++ A+ + D+AH +G V + + AD T+K L G G+
Sbjct: 180 YMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAG---ADYAIGCTYKYLNGGPGSQ 236
Query: 206 IFF 208
F
Sbjct: 237 AFV 239
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 31.1 bits (70), Expect = 0.40
Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 10/152 (6%)
Query: 64 FQVYTALLKPHDRIMALDLPHGGHLSHGY----QTDTKKISAVSIFFETMPYRLNESTGY 119
+ + KP + + L S Y Q ++ P E+
Sbjct: 142 HLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRI 201
Query: 120 IDYDQLEKSATLFRPKLIVAGASAYA--RLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177
D ++ + +I+ + + ++ I K + + D+AH G V
Sbjct: 202 EDILEVIEKEGD-SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL 260
Query: 178 GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 209
+ ++A ++K L G +
Sbjct: 261 YLHDWGVDFA---CWCSYKYLNAGAGGIAGAF 289
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 143 AYARLYDYERIRKVC--NKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTT 194
A R++D ++ ++ A G+ A+ DV+ TTT
Sbjct: 143 ALRRVFDIGEVK-AYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTT 195
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 28.4 bits (64), Expect = 2.8
Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 38/130 (29%)
Query: 58 SGSPSNFQVYTALLKPHDRIMALDLPH-----GGHLSHGYQTDTKKISAVSIFFETMPYR 112
SG +N + + +P+ + H G ++ + P+
Sbjct: 127 SGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANA---------------QAHPFM 171
Query: 113 LNESTGYIDYDQLEKSATLFRPKLIVA-------GASAYARLYDYERIRKVCNKQKAIML 165
N + D L P +IV G A + + + +L
Sbjct: 172 HN------NCDHLRMLIQRHGPGIIVVDSIYSTLGTIA-----PLAELVNISKEFGCALL 220
Query: 166 ADMAHISGLV 175
D +H G
Sbjct: 221 VDESHSLGTH 230
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 28.5 bits (64), Expect = 2.9
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 23/151 (15%)
Query: 115 ESTGYIDYDQLEK---SATLFRPKLIVA---GASAYARLYDYERIRKVCNKQKAIMLADM 168
I + + ++ Y L D ++I KVC++ +L +
Sbjct: 125 YPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG 184
Query: 169 AHISGLVAAGVIPSPFEY--ADVVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFY 224
A+ A G +P + AD + + HKS+ G ++ ++ EI + E +
Sbjct: 185 AY-----AIGRMPVSLKEIGADFIVGSGHKSM-AASGPIGVMGMKEEWAEIVLRRSEKYK 238
Query: 225 DYEEKINQAVFPGLQGGPHNHTITGLAVALK 255
+ E ++ L TI L +
Sbjct: 239 NKEVEL-------LGCTARGATIITLMASFP 262
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 28.3 bits (64), Expect = 3.5
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 114 NESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 170
+ +T ID + L+++ T K I+ + +++ I K+ + I+L D
Sbjct: 110 DINTLNIDIESLKEAVTD-STKAILT-VNLLGNPNNFDEINKIIGGRDIILLEDNCE 164
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 27.6 bits (62), Expect = 4.7
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 143 AYARLYDYERIRKVCNKQKAI-MLADMAHISGLVAAGVIPSPFEY---ADVVTTTT 194
+ + E I V + + +L + G+ A + +P + AD+V T T
Sbjct: 139 QLSARFALEAIL-VHDPYASPEILERIGRRCGVPA--RMAAPADIAAQADIVVTAT 191
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel,
protein-inhibitor complex, homodimer, lyase; HET: BMQ;
2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A*
1l2u_A
Length = 245
Score = 27.2 bits (61), Expect = 5.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 209 RKGVKEINKQGKEVFYD 225
+ V+E+ ++G ++F D
Sbjct: 55 PQFVRELQQRGFDIFLD 71
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Length = 182
Score = 27.1 bits (59), Expect = 5.9
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 107 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA---SAYARLYDYER-----IRKVCN 158
E M YR ++ST +DY E+ + + ++ Y +L R I C+
Sbjct: 35 ENMVYRFDKSTNILDYLSTERDHVMMAVRYYMSKQRLDDLYRQLPTKTRSYIDIINIYCD 94
Query: 159 KQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 208
K DM + + + +V T G R A I F
Sbjct: 95 KVSNDYNRDMNIMYDMASTKSFTVYDINNEVNTIMLDNKGLGVRLATISF 144
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 27.5 bits (61), Expect = 6.1
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 149 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEY-ADVVTTTTHKSLRGPRGAMIF 207
+++++ ++AI+ D A + + P + AD+V T+T K + GPRG ++
Sbjct: 160 NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLA 219
Query: 208 FRK 210
+K
Sbjct: 220 GKK 222
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 27.3 bits (61), Expect = 6.6
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 143 AYARLYDYERIRKVCN--KQKAIMLA-DMAHISGL--VAAGVIPSPFEYADVVTTTTHKS 197
A+ + E I + L ++ SGL A + + D++TT T
Sbjct: 147 AFHKHLGIEEIV-AYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK 205
Query: 198 LRGP--RGAMIFFRKGV 212
M+ G+
Sbjct: 206 AYATIITPDML--EPGM 220
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529,
structural genomics, NEW YORK S genomics research
consortium; 2.19A {Lactobacillus acidophilus}
Length = 259
Score = 27.2 bits (61), Expect = 7.2
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 209 RKGVKEINKQGKEVFYD 225
+K++ +QG ++F D
Sbjct: 46 IDVIKKLTQQGYKIFLD 62
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 27.2 bits (61), Expect = 7.2
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 115 ESTGYIDYDQLEKSATLF--RPKLIVA----GASAYARLYDYERIRKVCNKQKAIMLADM 168
+ T ID D L+ + +PK ++ G +A + I ++C + +++ D
Sbjct: 102 DETYNIDVDLLKLAIKECEKKPKALILTHLYGNAA-----KMDEIVEICKENDIVLIEDA 156
Query: 169 AH 170
A
Sbjct: 157 AE 158
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
infectious diseases; 1.77A {Vibrio cholerae o1 biovar el
tor} PDB: 3uwq_A*
Length = 255
Score = 26.8 bits (60), Expect = 7.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 209 RKGVKEINKQGKEVFYD 225
V+E++K+G VF D
Sbjct: 68 PDFVRELHKRGFSVFLD 84
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 26.8 bits (60), Expect = 7.7
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 209 RKGVKEINKQGKEVFYD 225
VK++ ++ E+F D
Sbjct: 44 PSIVKQLKERNCELFLD 60
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.00A {Thermotoga maritima} SCOP:
c.1.2.3
Length = 213
Score = 26.8 bits (60), Expect = 8.1
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 209 RKGVKEINKQGKEVFYD 225
+K E+ K+ ++ D
Sbjct: 48 KKIFDELAKRNLKIILD 64
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines,
nucleosides, nucleotides, lyase; 2.00A {Coxiella
burnetii}
Length = 239
Score = 26.7 bits (60), Expect = 9.1
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 209 RKGVKEINKQGKEVFYD 225
V+E+ ++G +F D
Sbjct: 49 PAFVEELMQKGYRIFLD 65
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, NPPSFA, national project on structural and
functional analyses; HET: C5P; 2.20A {Geobacillus
kaustophilus} PDB: 2yyt_A*
Length = 246
Score = 26.4 bits (59), Expect = 9.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 209 RKGVKEINKQGKEVFYD 225
V + +QG VF D
Sbjct: 45 PAIVAFLKEQGHAVFLD 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,671,256
Number of extensions: 279566
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 42
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)