RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022463
(297 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 301 bits (771), Expect = e-100
Identities = 171/260 (65%), Positives = 210/260 (80%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYS GYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGS
Sbjct: 48 LEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 107
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYI
Sbjct: 108 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI 167
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+
Sbjct: 168 DYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV 227
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQ 239
PSPFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQ
Sbjct: 228 PSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQ 287
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I G+AVALKQ T
Sbjct: 288 GGPHNHAIAGVAVALKQAMT 307
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 275 bits (704), Expect = 8e-91
Identities = 177/260 (68%), Positives = 215/260 (82%), Gaps = 1/260 (0%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
++A+GS + NKYSEGYPG RYYGG E +D E LCQ+RALEAF LDP +WGVNVQ SGS
Sbjct: 44 LEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 103
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
P+N VYTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN TG I
Sbjct: 104 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 163
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DY+QL +A LFRP+LI+AG SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VI
Sbjct: 164 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI 223
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQ-GKEVFYDYEEKINQAVFPGLQ 239
PSPF++AD+VTTTTHK+LRG R +IF+RKGVK ++ + G+E+ Y +E++IN AVFP LQ
Sbjct: 224 PSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 283
Query: 240 GGPHNHTITGLAVALKQVCT 259
GGPHNH I +AVALKQ CT
Sbjct: 284 GGPHNHAIAAVAVALKQACT 303
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 253 bits (647), Expect = 7e-83
Identities = 110/258 (42%), Positives = 158/258 (61%), Gaps = 23/258 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
M+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F + Q SG+
Sbjct: 40 MEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANV----QPHSGA 95
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+N VY +L+ D ++ ++L HGGHL+HG ++ + + + Y ++ T I
Sbjct: 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVI 150
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DYD + + A L RPKLIVA ASAY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P YA VTTTTHK+LRGPRG MI + ++I++A+FPG+QG
Sbjct: 211 PNPVPYAHFVTTTTHKTLRGPRGGMILC--------------QEQFAKQIDKAIFPGIQG 256
Query: 241 GPHNHTITGLAVALKQVC 258
GP H I AVA +
Sbjct: 257 GPLMHVIAAKAVAFGEAL 274
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 248 bits (635), Expect = 6e-81
Identities = 122/259 (47%), Positives = 164/259 (63%), Gaps = 21/259 (8%)
Query: 1 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 60
MQA GS +TNKY+EGYPG RYYGG EY+D+ E L RA E F D NVQ SGS
Sbjct: 43 MQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGS 98
Query: 61 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 120
+NF VYTALL+P D ++ ++L HGGHL+HG ++ + +PY ++ TG+I
Sbjct: 99 QANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGIDA-TGHI 152
Query: 121 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 180
DY LEK A +PK+I+ G SAY+ + D+ ++R++ + A + DMAH++GLVAAGV
Sbjct: 153 DYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVY 212
Query: 181 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQG 240
P+P +A VVTTTTHK+L GPRG +I + G + + +K+N AVFPG QG
Sbjct: 213 PNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSE-----------ELYKKLNSAVFPGGQG 261
Query: 241 GPHNHTITGLAVALKQVCT 259
GP H I G AVALK+
Sbjct: 262 GPLMHVIAGKAVALKEAME 280
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 105 bits (263), Expect = 2e-26
Identities = 35/287 (12%), Positives = 80/287 (27%), Gaps = 55/287 (19%)
Query: 5 GSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVN--VQSLSGSPS 62
G+V + + G + G+ E+ + +G + + G +
Sbjct: 53 GAVTQSMQAAMMRGDEAFSGSRSYYALA--------ESVK---NIFGYQYTIPTHQGRGA 101
Query: 63 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS--------IFFETMPYRLN 114
L+K ++ LD S+ + T+ S ++ I
Sbjct: 102 EQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRY 161
Query: 115 ESTGYIDYDQLEKSATLFRPKLIV---------AGASAYARLYDYERIRKVCNKQKAIML 165
+ G D + LE+ P + + L + + + + K ++
Sbjct: 162 DFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVV 221
Query: 166 ADMAHISGLVAAGVIPSP--------------FEYADVVTTTTHKSLRGPRGAMIFFRKG 211
D A + ++YAD++ + K P G ++ +
Sbjct: 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD 281
Query: 212 VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 258
+ + + +G P + G A+ V
Sbjct: 282 -----------SFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVG 317
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 99.7 bits (247), Expect = 3e-24
Identities = 33/291 (11%), Positives = 73/291 (25%), Gaps = 44/291 (15%)
Query: 5 GSVMTNKYSEGYPGARYYGGNEY-IDMAESL---------------CQKRALEAFRLDPE 48
G K+ G ++G + D+ + +K A + D
Sbjct: 25 GGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADK- 83
Query: 49 KWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 108
S +N V +AL+ D ++ H + + +
Sbjct: 84 ---TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP 140
Query: 109 MPYRLNESTGYIDYDQLEKSATLFRPK----------LIVAGASAYARLYDYERIRKVCN 158
+ D ++ + A P+ ++ + +Y+ + K
Sbjct: 141 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIG 200
Query: 159 KQKAIMLADMAHISGLVAAGVIP----------SPFEYADVVTTTTHKSLRGPRGAMIFF 208
+ D A + ++ P + +V + HK G
Sbjct: 201 HLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIH 260
Query: 209 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 259
+K ++ Y + N + + P L V
Sbjct: 261 KKDSHI----KGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEG 307
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 81.1 bits (199), Expect = 7e-18
Identities = 34/303 (11%), Positives = 83/303 (27%), Gaps = 46/303 (15%)
Query: 4 VGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSN 63
++ ++++ G Y G+ + +A E F D + + G +
Sbjct: 53 TNAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYD-----YIIPAHQGRGAE 103
Query: 64 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM------PYRLNEST 117
++ LLK + P H T + ++
Sbjct: 104 NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWK 163
Query: 118 GYIDYDQLEKSATLFRPKLI---------VAGASAYARLYDYERIRKVCNKQKAIMLADM 168
G D +L+++ I + + + + + ++ + ++ D
Sbjct: 164 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 223
Query: 169 AHISGLVAAG--------------VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKE 214
A VI ++YAD +T + K G ++ R
Sbjct: 224 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRD---- 279
Query: 215 INKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVY 274
+E+F ++ GG + + L++ + ++
Sbjct: 280 ----NEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLG 335
Query: 275 PAF 277
Sbjct: 336 DRL 338
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 74.0 bits (181), Expect = 2e-15
Identities = 33/284 (11%), Positives = 74/284 (26%), Gaps = 54/284 (19%)
Query: 3 AVGSVMT-NKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVN--VQSLSG 59
+ + M+ +++ G Y G+E E + + E +G V + G
Sbjct: 51 SGTNAMSDKQWAGMMIGDEAYAGSENFYHLE--------KTVK---ELFGFKHIVPTHQG 99
Query: 60 SPSNFQVYTALLKPHDRIMA---LDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 116
+ + +KP + +G +
Sbjct: 100 RGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNG-----ATFVDIVRDEAHDASLNLPF 154
Query: 117 TGYIDYDQLEKSATLFRPKLI---------VAGASAYARLYDYERIRKVCNKQKAIMLAD 167
G ID ++L + I + + + ++ + + D
Sbjct: 155 KGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYD 214
Query: 168 MAHIS--------------GLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVK 213
+ ++ F YAD T + K G +
Sbjct: 215 ATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMND--- 271
Query: 214 EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 257
+E+F +E + GG + +A+ L++
Sbjct: 272 ------EEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREA 309
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 39.5 bits (91), Expect = 3e-04
Identities = 27/229 (11%), Positives = 58/229 (25%), Gaps = 20/229 (8%)
Query: 3 AVGSVMTNKYSEGYPGARYYGGNEYIDMA------ESLCQKRALEAFRLDPEKWGVNVQS 56
+ R + A +L K F+
Sbjct: 77 YSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATP 136
Query: 57 LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 116
+S S +A K + + + + SH +++ + L+
Sbjct: 137 ISTGMSISLCLSAARKKYGSNVVI----YPYASHKSPIKAVSFVGMNMRL--VETVLDGD 190
Query: 117 TGYIDYDQLEKSATLFRPK------LIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 170
Y+ + +E + L D I K+C + + A+
Sbjct: 191 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 250
Query: 171 ISGLVAAGVIPSPF--EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 217
D V +++ K+L P G + + + I +
Sbjct: 251 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE 299
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 33.6 bits (76), Expect = 0.022
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 58 SGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 117
S +N ++ LL D I++ L H + K+ + + + RL E+
Sbjct: 113 SCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAR 172
Query: 118 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 177
L + +F S + + + + + +K A+++ D +H G V
Sbjct: 173 EAGARHVLIATDGVF---------SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGE 223
Query: 178 GVIPSPFEY-----ADVVTTTTHKSLRGPRGAMIFFRKGVKE 214
S D++T T K+L G G RK V E
Sbjct: 224 NGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVE 265
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
[TaxId: 562]}
Length = 759
Score = 27.8 bits (62), Expect = 1.7
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 213 KEINKQGKEVFYDYEEKINQAVFPGLQG----GPHNHTITGL 250
+E++ K++F +Y + NQ VF + +TGL
Sbjct: 127 RELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGL 168
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.2 bits (57), Expect = 4.4
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 209 RKGVKEINKQGKEVFYD 225
+K E+ K+ ++ D
Sbjct: 36 KKIFDELAKRNLKIILD 52
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 25.3 bits (55), Expect = 9.1
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 12/123 (9%)
Query: 26 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP---SNFQVY--TALLKPHDRIMAL 80
E + +L + + + ++ + +++Q T L HD L
Sbjct: 41 EPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTL 100
Query: 81 DLPHGGHLSHGYQTDTKKISAVSIFFETMPY-RLNESTGYIDYDQLEKSATLF----RPK 135
+ L G Q D + T+ + G + L +
Sbjct: 101 FGGN--SLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGG 158
Query: 136 LIV 138
IV
Sbjct: 159 NIV 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,118,605
Number of extensions: 50501
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 16
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)