BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022468
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2
OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1
Length = 301
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 99/200 (49%), Gaps = 10/200 (5%)
Query: 19 KEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPI 78
++G+ +TL NL+ +P D+ ++ S ++ +S ++ ++ Q K
Sbjct: 89 EQGFNVTLEYNLADLPA--DTTDLVQAASALKRNCFASVFEKYF---EFQEAGQEGHKRA 143
Query: 79 KLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCW 138
+ Y ET Y+ + ++ +F FK+ DVII FLQE + +K ++ P
Sbjct: 144 VINYRDDETMYIEAKADRVTVIFSTVFKDADDVIIGKVFLQEFRE---GRKASQTAPAVL 200
Query: 139 API--PPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCT 196
+ PP EL+ P + N G++TF ++PRH K D T+ + +F Y+ YH+KC+
Sbjct: 201 YSLGEPPLELKDLPEARVGDNVGYITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCS 260
Query: 197 KGFIQRRMRKRLESLVETLQ 216
K ++ RMR + ++ L
Sbjct: 261 KVYLHTRMRAKTTDFLKVLN 280
>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 OS=Drosophila
melanogaster GN=Arc-p34 PE=2 SV=2
Length = 301
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 7/203 (3%)
Query: 14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
++ +EGY +++ +NL +IP +D ++ I +++ +S ++ + E +G
Sbjct: 83 LLTDTEEGYNVSVLINLEEIP--EDCEQIAKRIGLLKRNCFASVFEK--YFDYQEQGEEG 138
Query: 74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
+ + + Y ET YV +P ++ VF F++ DVII F+QEL + + A
Sbjct: 139 QKRAV-INYRNDETLYVEAKPDRVTVVFSTIFRDEDDVIIGKVFMQELREGRRASHTA-- 195
Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
P ++ PP + N G+VTF ++PRH + D T+ + F Y+ YH+
Sbjct: 196 PQVLFSHREPPLELANTDARVGDNIGYVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHI 255
Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
KC+K +I RMR + ++ L
Sbjct: 256 KCSKAYIHSRMRAKTSDFLKVLN 278
>sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2
PE=1 SV=1
Length = 300
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)
Query: 14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
+V P + GY ++L +L +P KDS ++ + M++ +S ++ E+ +G
Sbjct: 84 LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138
Query: 74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
+ + + Y ET YV + ++ VF FK+ DV+I F+QE + + A
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195
Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
P ++ PP + + N G++TF ++PRH D T+ + F Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255
Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
KC+K +I RMR + ++ L
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278
>sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii
GN=ARPC2 PE=2 SV=1
Length = 300
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)
Query: 14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
+V P + GY ++L +L +P KDS ++ + M++ +S ++ E+ +G
Sbjct: 84 LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138
Query: 74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
+ + + Y ET YV + ++ VF FK+ DV+I F+QE + + A
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195
Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
P ++ PP + + N G++TF ++PRH D T+ + F Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255
Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
KC+K +I RMR + ++ L
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278
>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens
GN=ARPC2 PE=1 SV=1
Length = 300
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)
Query: 14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
+V P + GY ++L +L +P KDS ++ + M++ +S ++ E+ +G
Sbjct: 84 LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138
Query: 74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
+ + + Y ET YV + ++ VF FK+ DV+I F+QE + + A
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195
Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
P ++ PP + + N G++TF ++PRH D T+ + F Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255
Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
KC+K +I RMR + ++ L
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278
>sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus
GN=Arpc2 PE=1 SV=1
Length = 300
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)
Query: 14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
+V P + GY ++L +L +P KDS ++ + M++ +S ++ E+ +G
Sbjct: 84 LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138
Query: 74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
+ + + Y ET YV + ++ VF FK+ DV+I F+QE + + A
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195
Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
P ++ PP + + N G++TF ++PRH D T+ + F Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNATARDNTINLIHTFRDYLHYHI 255
Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
KC+K +I RMR + ++ L
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278
>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus
GN=Arpc2 PE=1 SV=3
Length = 300
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)
Query: 14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
+V P + GY ++L +L +P KDS ++ + M++ +S ++ E+ +G
Sbjct: 84 LVNP-EPGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138
Query: 74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
+ + + Y ET YV + ++ VF FK+ DV+I F+QE + + A
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195
Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
P ++ PP + + N G++TF ++PRH D T+ + F Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNATARDNTINLIHTFRDYLHYHI 255
Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
KC+K +I RMR + ++ L
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278
>sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium
discoideum GN=arcB PE=1 SV=1
Length = 293
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 78 IKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCC 137
I + Y ETFY+ Q + +F + FK+ DVI++ FLQ DV K + VP
Sbjct: 135 IAINYRTDETFYLKPQGDNVIVIFDIAFKDADDVILSKIFLQSFVDV--RKTISNVPSIT 192
Query: 138 WAPIPPP-ELRG-EPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKC 195
++ PP EL+G + N GFV+F ++P HI K+ ++ + F Y+ YH+KC
Sbjct: 193 FSQKDPPLELKGVKGVRAGQANHGFVSFVLFPAHI--KKPQESADLIQTFRDYLHYHIKC 250
Query: 196 TKGFIQRRMRKRLESLVETLQ 216
KG++ MR R+ESL++ L
Sbjct: 251 AKGYMHTSMRNRVESLIQVLN 271
>sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles
gambiae GN=Arc-p34 PE=3 SV=2
Length = 304
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 102/204 (50%), Gaps = 7/204 (3%)
Query: 14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEML-WTVNSEDTFQ 72
+V P ++GY +++ ++L IP ++ + + +I +++ +S ++ + E +
Sbjct: 84 LVAP-EDGYNVSVLVDLENIP--ENWEETVRKIGLLKRNCFASVFEKYFDFQSQGEGEGE 140
Query: 73 GMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAK 132
G + + + Y ET YV +P ++ VF F++ DV++ F+QEL + + A
Sbjct: 141 GQKRAV-INYRNDETMYVEAKPDRVTVVFSTIFRDEDDVVLGKVFMQELREGRRASHTA- 198
Query: 133 VPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYH 192
P ++ PP + N G+VTF ++PRH + D T+ + F Y+ YH
Sbjct: 199 -PQVLFSHREPPLELANTGARVGENIGYVTFVLFPRHTAKETRDNTINLIHMFRDYLHYH 257
Query: 193 VKCTKGFIQRRMRKRLESLVETLQ 216
+KC+K +I RMR + ++ L
Sbjct: 258 IKCSKAYIHSRMRAKTTEFLKVLN 281
>sp|P53731|ARPC2_YEAST Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1
SV=1
Length = 342
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 25/247 (10%)
Query: 8 SLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILS-------SQLKE 60
SL V I + GY TL++ L+++ + I ++S+++ ILS S+ E
Sbjct: 87 SLGGVTIPSEVEPGYDYTLQITLAEL-----VQESILQLSVLKTIILSFPFELAISKFIE 141
Query: 61 M---------LWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDV 111
+ E G + Y E ++ ++ +F F++ +D
Sbjct: 142 LSQQQPAPVEAEITGGEVAANGDNTLFTIKYRDEENIFIKPSNDRVTIIFETIFQDETDK 201
Query: 112 IIATAFLQELTDV-GSSKKWAKVPPCCWAPIPPPELRG--EPFEDLSTNGGFVTFDIYPR 168
I FLQE D +++ P ++ PP EL+ +P + + F+TF ++PR
Sbjct: 202 IFGKVFLQEFVDARKRNRQIQSAPQVLYSHEPPLELKRLYQPPKVAEQSRRFITFVLFPR 261
Query: 169 HIEGKRLD-KTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTE 227
H + K L ++ L F Y YH+KC+K ++ RMR R++S ++ L + ED++ +
Sbjct: 262 HFQTKELQFHSICQLTLFRNYFHYHIKCSKAYMHSRMRFRVDSFIKVLNRAKVDEDDEND 321
Query: 228 KVQGNAR 234
++ R
Sbjct: 322 ELSAEGR 328
>sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1
Length = 317
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 27/239 (11%)
Query: 2 EMVKAISLDVVE-----IVQPAKEGYQLTLRLNLSKIPCGKDSMKVIS-EISMVQATILS 55
E+V +LD+++ V + GY ++ ++L ++P + + ++ ISM++ +L+
Sbjct: 61 ELVNYGTLDLLKQIYGAYVHEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLA 120
Query: 56 SQLK-----------------EMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIA 98
+ E ++ + T Q + + + Y ET + + ++
Sbjct: 121 APFHRAFTKQAELADLARKDPENAPMLDKQATSQEL---MAIHYRDEETIVLWPEHDRVT 177
Query: 99 AVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPP-ELRGEPFEDLSTN 157
VF +F+E +D I FLQE D P ++ PP E+R +
Sbjct: 178 VVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQKGDD 237
Query: 158 GGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQ 216
GFVTF ++ RH + + + + F + +H+K +K ++ +RMRKR+ + L
Sbjct: 238 FGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLN 296
>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1
Length = 1612
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 24/176 (13%)
Query: 36 GKDSMKVISEISMV-----QATILSSQLKEMLWTVNSEDTF-QGMCKPIKLVYHPRET-- 87
G D +V E+ V TILSS E+ WTV+ + + QG K++Y P
Sbjct: 624 GVDHKQVQRELGNVVLHLHNPTILSSSSVEVHWTVDQQSQYIQGY----KILYRPSGASH 679
Query: 88 ------FYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPI 141
+ ++ P K + V P K + I A F E S K+AK AP
Sbjct: 680 GESEWLVFEVRTPTKNSVVIPDLRKGVNYEIKARPFFNEFQGADSEIKFAKT--LEEAPS 737
Query: 142 PPPELRGEPFEDLSTNGGFVTFDIYPRHIE-GKRLDKTVWSLLNFYAYVKYHVKCT 196
PP D + VT+ P + G + VW L N KYH+ T
Sbjct: 738 APPRSVTVSKNDGNGTAILVTWQPPPEDTQNGMVQEYKVWCLGN---ETKYHINKT 790
>sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN=Robo1 PE=1 SV=1
Length = 1651
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 80/214 (37%), Gaps = 33/214 (15%)
Query: 36 GKDSMKVISEISMV-----QATILSSQLKEMLWTVNSEDTF-QGMCKPIKLVYHPRET-- 87
G D +V E+ V TILSS E+ WTV+ + + QG K++Y P
Sbjct: 663 GVDHKQVQRELGNVVLHLHNPTILSSSSVEVHWTVDQQSQYIQGY----KILYRPSGASH 718
Query: 88 ------FYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPI 141
+ ++ P K + V P K + I A F E S K+AK P
Sbjct: 719 GESEWLVFEVRTPTKNSVVIPDLRKGVNYEIKARPFFNEFQGADSEIKFAKT--LEERPS 776
Query: 142 PPPELRGEPFEDLSTNGGFVTFDIYPRHIE-GKRLDKTVWSLLNFYAYVKYHV-KCTKG- 198
PP D + VT+ P + G + VW L N +YH+ K G
Sbjct: 777 APPRSVTVSKNDGNGTAILVTWQPPPEDTQNGMVQEYKVWCLGN---ETRYHINKTVDGS 833
Query: 199 -------FIQRRMRKRLESLVETLQGPNLGEDEQ 225
F+ +R +E T GP + + Q
Sbjct: 834 TFSVVIPFLVPGIRYSVEVAASTGAGPGVKSEPQ 867
>sp|Q4FRN8|PUR9_PSYA2 Bifunctional purine biosynthesis protein PurH OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=purH PE=3 SV=1
Length = 526
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 84 PRETFYVI---KQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAP 140
P +F I +PL +AA + + +VIIA + + + +SKK +V C
Sbjct: 306 PESSFGGIIAFNRPLTLAAATAIIDNQFVEVIIAPSVEDGVLEATASKKNVRVLVC--GD 363
Query: 141 IPPPELRGEPFEDLSTNGGFV 161
+P PELR + NGG +
Sbjct: 364 LPAPELRDRQLDYKRVNGGLL 384
>sp|Q1QA75|PUR9_PSYCK Bifunctional purine biosynthesis protein PurH OS=Psychrobacter
cryohalolentis (strain K5) GN=purH PE=3 SV=1
Length = 526
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 69 DTFQGMCKPIKLVYHPRETFYVI---KQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVG 125
DT Q P +F I +PL +AA + + +VIIA + + +
Sbjct: 291 DTDQVAAYRTAFSTDPESSFGGIIAFNRPLTLAAAKAIIDNQFVEVIIAPSIEDGVLEAT 350
Query: 126 SSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFV 161
+SKK +V C +P PELR + NGG +
Sbjct: 351 ASKKNVRVLVC--GDLPAPELRDRQLDYKRVNGGLL 384
>sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1
Length = 1651
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 52 TILSSQLKEMLWTVNSEDTF-QGMCKPIKLVYHPRET--------FYVIKQPLKIAAVFP 102
T+LSS E+ WTV+ + + QG K++Y P + ++ P K + V P
Sbjct: 684 TVLSSSSIEVHWTVDQQSQYIQGY----KILYRPSGANHGESDWLVFEVRTPAKNSVVIP 739
Query: 103 MRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVT 162
K + I A F E S K+AK AP PP+ D + V+
Sbjct: 740 DLRKGVNYEIKARPFFNEFQGADSEIKFAKT--LEEAPSAPPQGVTVSKNDGNGTAILVS 797
Query: 163 FDIYPRHIE-GKRLDKTVWSLLNFYAYVKYHVKCT 196
+ P + G + VW L N +YH+ T
Sbjct: 798 WQPPPEDTQNGMVQEYKVWCLGN---ETRYHINKT 829
>sp|Q54JS5|WDR24_DICDI WD repeat-containing protein 24 homolog OS=Dictyostelium discoideum
GN=wdr24 PE=3 SV=1
Length = 1023
Score = 32.0 bits (71), Expect = 5.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 146 LRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMR 205
RGE F L + FV+ + HI T+WSLL + ++ K I+++ +
Sbjct: 422 FRGESFNQLCDHNQFVSQSVNQHHIS------TMWSLLKLHYSNLDEIQQHKELIEQQQK 475
Query: 206 KRLESL 211
+ LE L
Sbjct: 476 EELEKL 481
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,115,031
Number of Sequences: 539616
Number of extensions: 4245067
Number of successful extensions: 8957
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8924
Number of HSP's gapped (non-prelim): 19
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)