Query 022468
Match_columns 296
No_of_seqs 119 out of 185
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04045 P34-Arc: Arp2/3 compl 100.0 1.1E-98 2E-103 689.8 14.7 219 2-223 19-241 (241)
2 KOG2826 Actin-related protein 100.0 3.5E-96 8E-101 671.2 15.6 221 2-232 74-296 (301)
3 PTZ00278 ARP2/3 complex subuni 93.5 0.15 3.2E-06 46.0 5.4 121 75-216 52-173 (174)
4 PF05856 ARPC4: ARP2/3 complex 92.7 0.38 8.2E-06 43.3 6.6 118 75-213 50-168 (170)
5 KOG1876 Actin-related protein 54.4 25 0.00054 31.4 4.8 120 75-214 48-167 (168)
6 TIGR03829 YokU_near_AblA uncha 34.0 31 0.00068 28.2 2.1 31 24-54 57-87 (89)
7 COG0774 LpxC UDP-3-O-acyl-N-ac 27.4 1.4E+02 0.0029 29.6 5.5 29 95-126 151-191 (300)
8 PF14122 YokU: YokU-like prote 27.0 47 0.001 27.2 2.0 30 25-54 58-87 (87)
9 COG0415 PhrB Deoxyribodipyrimi 26.7 34 0.00073 35.3 1.4 19 198-216 331-350 (461)
10 PHA02122 hypothetical protein 22.6 2.7E+02 0.0059 21.4 5.2 42 53-106 12-53 (65)
11 PTZ00483 proliferating cell nu 21.7 3.9E+02 0.0085 25.4 7.4 104 53-168 145-261 (264)
12 TIGR02170 thyX thymidylate syn 20.9 37 0.00081 30.6 0.4 54 157-221 36-90 (209)
No 1
>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....
Probab=100.00 E-value=1.1e-98 Score=689.76 Aligned_cols=219 Identities=32% Similarity=0.602 Sum_probs=185.3
Q ss_pred hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcc-hHHHHHHHhHHHHHhHHHHHHHHHhhcCccccCCCccceEE
Q 022468 2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDS-MKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKL 80 (296)
Q Consensus 2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~-~~li~~is~LKrn~lAApFe~af~~~~~~~~~~~~~~~~~I 80 (296)
|+|+++||++++ ++||+|||+||.|||++||+++++ +++|+++|+||||||||||+++|+.++++++.+.+.++++|
T Consensus 19 e~l~~~Yg~~~~--~~pe~Gy~~tL~idl~~lp~~~~~~~~~i~~is~LKr~~~aapF~~~f~~~~~~~~~~~~~~~~~i 96 (241)
T PF04045_consen 19 EYLKREYGSYVQ--TPPESGYDVTLVIDLEKLPADEEDREELIKKISLLKRNCLAAPFEKAFDEQASLSEEPPGEKPAVI 96 (241)
T ss_dssp HHHHHHCCCCE---ES--TTSSEEEEEETTS-----SSHHHHHHHHHTHHHHHCCHHHHHHHCHHHCT-----TTT-EEE
T ss_pred HHHHHhcccccc--CCCCCCccEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCceEEE
Confidence 789999999985 689999999999999999987666 88999999999999999999999998888776667889999
Q ss_pred eccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCC-CCCCCCCCCCCCC-CCCCc
Q 022468 81 VYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAP-IPPPELRGEPFED-LSTNG 158 (296)
Q Consensus 81 ~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~-ePPlELr~~~~~~-~~~n~ 158 (296)
|||+||+|||+|++|||||||||+|+|+||+||||||||||+||||+++ ++||||+||+ +||+||+|+++++ .++|+
T Consensus 97 ~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~-~~APqvlfS~~~PPlEl~~~~~~~~~~~n~ 175 (241)
T PF04045_consen 97 HYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSR-QTAPQVLFSHREPPLELRGVPGARNLGDNV 175 (241)
T ss_dssp EECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT---TTS-EEEEECSS--CGGTT-TT----STTE
T ss_pred EeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccC-CCCCceeccCCCCChhHcCCCCccccCCCe
Confidence 9999999999999999999999999999999999999999999999965 9999999997 9999999998887 89999
Q ss_pred eEEEEEecCCCC-CCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhcCCCCCCc
Q 022468 159 GFVTFDIYPRHI-EGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGED 223 (296)
Q Consensus 159 GyVTFvLFpRH~-~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLNrAkpe~~ 223 (296)
|||||||||||+ +++++++|||+|++|||||||||||||||||||||+||++|||||||||||.|
T Consensus 176 gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lkvLnrAkpe~~ 241 (241)
T PF04045_consen 176 GYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLKVLNRAKPEEE 241 (241)
T ss_dssp EEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS----
T ss_pred EEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999999995 58899999999999999999999999999999999999999999999999954
No 2
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=100.00 E-value=3.5e-96 Score=671.19 Aligned_cols=221 Identities=24% Similarity=0.468 Sum_probs=210.0
Q ss_pred hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcchHHHHHHHhHHHHHhHHHHHHHHHhhcCccccCCCccceEEe
Q 022468 2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLV 81 (296)
Q Consensus 2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~li~~is~LKrn~lAApFe~af~~~~~~~~~~~~~~~~~I~ 81 (296)
++||++||.++ ..||+|||+||+|||++||++++ ++++.+++|||||+||+|+++|+ .|+++.++++.++||
T Consensus 74 ~LLk~~yg~~~---~epE~Gyn~slli~L~~lpa~~~--~l~~~i~~lkrn~~as~F~k~f~---~Q~~~~e~~~r~~I~ 145 (301)
T KOG2826|consen 74 DLLKRVYGSYL---SEPEPGYNVSLLIDLAELPADKE--SLAKTISLLKRNCFASVFEKYFQ---FQEAGVEGEKRAVIH 145 (301)
T ss_pred HHHHHHhcccc---CCCCCCccEEEEEEHHhCchhHH--HHHHHHHHhhhhHHHHHHHHHHh---cchhhhhhhheeEEE
Confidence 78999999987 67999999999999999999975 49999999999999999997664 577777788999999
Q ss_pred ccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCceE
Q 022468 82 YHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAP-IPPPELRGEPFEDLSTNGGF 160 (296)
Q Consensus 82 YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~-ePPlELr~~~~~~~~~n~Gy 160 (296)
|||||+|||+|++|||||||||+|+|+||+||||||||||+||||. +|+|||||||+ ||||||++++++++|+|+||
T Consensus 146 YRddEti~i~~k~DRVTvvFsTiF~de~D~I~GKVFlQEf~e~Rra--~qtAPqVLfShrePPLElkd~~~~~vgdn~gy 223 (301)
T KOG2826|consen 146 YRDDETIYIEPKNDRVTVVFSTIFRDEDDVIIGKVFLQEFVEGRRA--SQTAPQVLFSHREPPLELKDLYDARVGDNIGY 223 (301)
T ss_pred eccCceEEEecCCCeEEEEEEEeeccCCceeehHHHHHHHHHHHhh--hccccHHHhhcCCCCchhhhcCCcccccccce
Confidence 9999999999999999999999999999999999999999999995 79999999995 99999999998999999999
Q ss_pred EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhcCCCCCCcc-hhhhhcCC
Q 022468 161 VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDE-QTEKVQGN 232 (296)
Q Consensus 161 VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLNrAkpe~~~-~~k~~~~~ 232 (296)
|||||||||++++.+++||++|++|||||||||||||||||||||+||++|||||||||||++. ++||..||
T Consensus 224 iTFVLFpRH~~k~~rd~tI~~i~~FRdylHyHIKcSKaYmHsRMR~k~~dFlKVLNRArpd~~~~erkT~tGr 296 (301)
T KOG2826|consen 224 ITFVLFPRHTNKETRDNTINLIHLFRDYLHYHIKCSKAYMHSRMRAKTSDFLKVLNRARPDVEDEERKTFTGR 296 (301)
T ss_pred EEEEEecccCCchhccchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHhhcCCCccchhhccccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999666 88999997
No 3
>PTZ00278 ARP2/3 complex subunit; Provisional
Probab=93.55 E-value=0.15 Score=46.01 Aligned_cols=121 Identities=19% Similarity=0.245 Sum_probs=98.2
Q ss_pred ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468 75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL 154 (296)
Q Consensus 75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~ 154 (296)
-.|+.|...++|..+|+++-+.|-|.|.+.-.|+-+.++++-|+. |.-.|- .+=+||-- .|-
T Consensus 52 l~pl~I~Rne~E~clIE~SiNSvRiSi~ikqaDeie~iL~~kf~~-Fl~~RA-----e~F~ILRr---------kPv--- 113 (174)
T PTZ00278 52 LNPIYIVRSEKEKCLIEPSINSVRISFSFKKSDELDVIIARKFVS-FLAQRA-----EQFVILRR---------KPI--- 113 (174)
T ss_pred cCcEEEEEcCCceEEEEcccceEEEEEEehhhChHHHHHHHHHHH-HHHhhh-----hceeEEee---------cCc---
Confidence 467999999999999999999999999999999999999999986 444442 12222222 111
Q ss_pred CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhc
Q 022468 155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQ 216 (296)
Q Consensus 155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLN 216 (296)
-|| |||.+.--|++.--..+-|+.|.+|=.=+---|.--|-.+.+|=|.=.++|++-++
T Consensus 114 ---~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaRaR~~A~~fl~~f~ 173 (174)
T PTZ00278 114 ---PGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTRARIAAPEFFKALA 173 (174)
T ss_pred ---CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 144 78999999998766789999999999988889999999999999999999998765
No 4
>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....
Probab=92.65 E-value=0.38 Score=43.33 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=82.6
Q ss_pred ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468 75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL 154 (296)
Q Consensus 75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~ 154 (296)
..|+.|...+.|..+|+++-+.|-|.+.+...|+-+.++.+-|+. |.-.|-. +=+||-- -|-+
T Consensus 50 l~pl~I~Rne~E~clIE~SiNSvRvSi~ikq~Deie~iL~~kf~r-Fl~~RAe-----~F~ILRR--kPv~--------- 112 (170)
T PF05856_consen 50 LNPLVISRNEKEKCLIEPSINSVRVSIKIKQADEIERILCHKFTR-FLMQRAE-----NFFILRR--KPVE--------- 112 (170)
T ss_dssp ---EEEESSSS-EEEEEEBSSEEEEEEE----SCHHHHHHHHHHH-HHHHCTT-----TSTTB-S--S--T---------
T ss_pred cCceeeccCCCceEEEEcccceEEEEEEecccChHHHHHHHHHHH-HHHhhhh-----hheeeee--cCcC---------
Confidence 468999999999999999999999999999999999999999976 4444422 1122222 1111
Q ss_pred CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 022468 155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVE 213 (296)
Q Consensus 155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lk 213 (296)
|| |||.+.-.|++.--..+-|+.|.+|=.=+---|.--|-.+-+|=|.=.++|++
T Consensus 113 ----GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naRaR~~A~~fl~ 168 (170)
T PF05856_consen 113 ----GYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARARIVAEEFLK 168 (170)
T ss_dssp ----TSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred ----CCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44 89999999998766789999999997777666777777777777766666653
No 5
>KOG1876 consensus Actin-related protein Arp2/3 complex, subunit ARPC4 [Cytoskeleton]
Probab=54.40 E-value=25 Score=31.45 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=92.5
Q ss_pred ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468 75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL 154 (296)
Q Consensus 75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~ 154 (296)
..+++|.-.+.|..-|.|+-..|-+...+.=.|+-..|+.+-|++ |...|- -|=+||-. -|-
T Consensus 48 l~pv~isRNe~Ek~LIE~SiNSvRiSi~vKQaDEiE~IL~~KF~r-Fl~~RA-----e~F~iLRR---------kPv--- 109 (168)
T KOG1876|consen 48 LTPVVISRNEQEKVLIEPSINSVRISIAVKQADEIERILCHKFTR-FLMMRA-----EAFFILRR---------KPV--- 109 (168)
T ss_pred hCceEeecccccceeEecccceEEEEEeecchHHHHHHHHHHHHH-HHHHhh-----hhheeeee---------CCc---
Confidence 468999999999999999999999888888889999999999987 555552 23344433 111
Q ss_pred CCCceEEEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 022468 155 STNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVET 214 (296)
Q Consensus 155 ~~n~GyVTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkv 214 (296)
.+-+|+|.+-.-|.+.-.--+-++.+..|-.=..--|.-+|.++..|-|--.++|++.
T Consensus 110 --~gy~IsfLItn~hte~m~k~Klvdf~iefmeeidkeiSemkl~~n~rar~~ae~fl~~ 167 (168)
T KOG1876|consen 110 --QGYDISFLITNFHTEQMYKHKLVDFIIEFMEEIDKEISEMKLFLNARARQVAEEFLKR 167 (168)
T ss_pred --CccchhhhhhccchHHHHhchhHHHHHHHHHHHhhhhhhhccccchhhHHhHHHHHhc
Confidence 1123899999999875333466777777777777789999999999999888888874
No 6
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=33.96 E-value=31 Score=28.19 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=25.3
Q ss_pred EEEEEecCCCCCCCcchHHHHHHHhHHHHHh
Q 022468 24 LTLRLNLSKIPCGKDSMKVISEISMVQATIL 54 (296)
Q Consensus 24 vTL~iDL~~lp~~~e~~~li~~is~LKrn~l 54 (296)
.=++||-.+||..-..++|.+.=.+||||.|
T Consensus 57 ~l~l~~~~~~p~~~~y~~lm~~~~~lk~nyf 87 (89)
T TIGR03829 57 QLLLVDTKKLPDETTYEELMKMPRLLKRNYF 87 (89)
T ss_pred hhEEeecccCCccccHHHHhhcHHHHhhccc
Confidence 3578999999977554678888999999975
No 7
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=27.38 E-value=1.4e+02 Score=29.55 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=24.6
Q ss_pred CeEEEEeeeeeccCchhHHHH------------HHHHHHHHhcc
Q 022468 95 LKIAAVFPMRFKEHSDVIIAT------------AFLQELTDVGS 126 (296)
Q Consensus 95 DRVTVIFst~FkD~~D~vigk------------vFLQEFvDaRr 126 (296)
|...+.|.+.|.-+ +||+ .|-+|...||-
T Consensus 151 dg~r~~~~IdF~~p---~Ig~~~q~~~~~~~~~sf~~eIa~ART 191 (300)
T COG0774 151 DGFRLSYTIDFDHP---AIGRQWQSFEFDFSAESFRKEIARART 191 (300)
T ss_pred CCcEEEEEEecCCc---ccCCcceeEEEecchHHHHHHhhhhhh
Confidence 88888899999876 6777 99999999985
No 8
>PF14122 YokU: YokU-like protein
Probab=27.02 E-value=47 Score=27.23 Aligned_cols=30 Identities=7% Similarity=0.236 Sum_probs=24.2
Q ss_pred EEEEecCCCCCCCcchHHHHHHHhHHHHHh
Q 022468 25 TLRLNLSKIPCGKDSMKVISEISMVQATIL 54 (296)
Q Consensus 25 TL~iDL~~lp~~~e~~~li~~is~LKrn~l 54 (296)
=++||-.+||..-.-++|...=.+||||.|
T Consensus 58 l~Lidtk~l~~sity~~LM~~~rlLKrNyF 87 (87)
T PF14122_consen 58 LFLIDTKKLPNSITYEELMNQPRLLKRNYF 87 (87)
T ss_pred eEEEecccCCccccHHHHhhchhhHhhccC
Confidence 478999999877544678888899999965
No 9
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=26.67 E-value=34 Score=35.33 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=15.2
Q ss_pred hhhHHHHHHhHHHHH-HHhc
Q 022468 198 GFIQRRMRKRLESLV-ETLQ 216 (296)
Q Consensus 198 aYmHsRMR~Rv~~~l-kvLN 216 (296)
+|||.|||-=|++|| |.|+
T Consensus 331 G~MHNR~RMivAsFL~k~L~ 350 (461)
T COG0415 331 GYMHNRMRMIVASFLTKDLL 350 (461)
T ss_pred CCcchHHHHHHHHHHHHhcC
Confidence 799999999999876 4443
No 10
>PHA02122 hypothetical protein
Probab=22.60 E-value=2.7e+02 Score=21.42 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHhhcCccccCCCccceEEeccCCceEEEeecCCeEEEEeeeeec
Q 022468 53 ILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFK 106 (296)
Q Consensus 53 ~lAApFe~af~~~~~~~~~~~~~~~~~I~YR~dE~iyI~~~~DRVTVIFst~Fk 106 (296)
+|--+||.||=.+ .+ ++-+..+.=.||++ +|.|.|-|++.-.
T Consensus 12 vm~~vfe~afi~l-~g---~~~~~iiihs~~~~--------gd~v~vn~e~~~n 53 (65)
T PHA02122 12 VMNRVFEEAFIGL-LG---DGCENIIIHSFKDD--------GDEVIVNFELVVN 53 (65)
T ss_pred HHHHHHHHHHHHh-hC---CCCCcEEEEeeccC--------CCEEEEEEEEEEC
Confidence 5677899888766 22 22223444456664 5777777777654
No 11
>PTZ00483 proliferating cell nuclear antigen; Provisional
Probab=21.68 E-value=3.9e+02 Score=25.38 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=62.0
Q ss_pred HhHHHHHHHHHhhcCccccCCCccceEEeccCCceEEEeecCC--eEEEEee-------eeeccCchhHHHHHHHHHHHH
Q 022468 53 ILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPL--KIAAVFP-------MRFKEHSDVIIATAFLQELTD 123 (296)
Q Consensus 53 ~lAApFe~af~~~~~~~~~~~~~~~~~I~YR~dE~iyI~~~~D--RVTVIFs-------t~FkD~~D~vigkvFLQEFvD 123 (296)
+-++.|.++.+.+..= .+.+.|.- +++.+++.+++| .+.+.++ +.-+++..-.|+--.|-.|..
T Consensus 145 m~s~~f~~i~kdl~~v------sD~v~i~~-~~~~v~f~a~Gd~~~~~~~l~~~~~~v~~~~~~~v~~~fsl~YL~~f~K 217 (264)
T PTZ00483 145 MNSKKFQEFAKYLHSI------GDTVSISM-KKDEMRLETEGEGIKASKQFHNDVGDVRVTSTESLSQEFATRYLVLFSK 217 (264)
T ss_pred EEHHHHHHHHHHHHHc------CCEEEEEE-ECCEEEEEEeecCcEEEEEEccCCCceEEEecCcchheehHHHHHHhhc
Confidence 5577888777655211 13466666 456688787776 3444443 112233345567777888876
Q ss_pred hccCCCCCCCCCc--ccCCCCCCCCCCCCC--CCCCCCceEEEEEecCC
Q 022468 124 VGSSKKWAKVPPC--CWAPIPPPELRGEPF--EDLSTNGGFVTFDIYPR 168 (296)
Q Consensus 124 aRr~~~i~~APqV--lfS~ePPlELr~~~~--~~~~~n~GyVTFvLFpR 168 (296)
|-. -|..| .++.+-|+.|.=--+ ....++.||++|-|=||
T Consensus 218 a~~-----lsd~V~i~l~~~~Pl~ley~i~~~~~~~~~~G~l~fyLAPr 261 (264)
T PTZ00483 218 ATS-----LADEVSINLSAGIPLSVKFNFKDPLTDLQDSSFINFYLAPN 261 (264)
T ss_pred ccc-----CCCeEEEEEcCCCCEEEEEEecccccCCCCceEEEEEEccc
Confidence 542 35666 466777876654200 01125789999999997
No 12
>TIGR02170 thyX thymidylate synthase, flavin-dependent. Two forms of microbial thymidylate synthase are known: ThyA (2.1.1.45) and ThyX (2.1.1.148). This model describes ThyX, a homotetrameric flavoprotein. Both enzymes convert dUMP to dTMP. Under oxygen-limiting conditions, thyX can complement a thyA mutation.
Probab=20.90 E-value=37 Score=30.60 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=39.5
Q ss_pred CceEEEEEecCCCCCCcchhhhHHHHhhhccccceeee-ccchhhHHHHHHhHHHHHHHhcCCCCC
Q 022468 157 NGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVK-CTKGFIQRRMRKRLESLVETLQGPNLG 221 (296)
Q Consensus 157 n~GyVTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIK-cSKaYmHsRMR~Rv~~~lkvLNrAkpe 221 (296)
+.++|.+++=-.|.++ . =...++++|+ ||.+-.|.=||.|+.++.+.=.|-...
T Consensus 36 ~~~li~~l~~~gH~S~------~-----Eh~~~tF~i~g~sr~~~~ql~RHR~~s~~~~S~RY~~~ 90 (209)
T TIGR02170 36 DAGLIDYLLRHGHFSP------L-----EHASFTFHVKGASRSVAAQLTRHRIASYSVQSQRYVLL 90 (209)
T ss_pred HHHHHHHHHHcCCCCh------h-----hheEEEEEEEeecHHHHHHHHHHhcCceeecccccccC
Confidence 4456655555555442 1 1246899999 999999999999999988887777755
Done!