Query 022468
Match_columns 296
No_of_seqs 119 out of 185
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_D Actin-related protein 2 100.0 3E-101 1E-105 726.7 16.4 228 2-232 69-312 (317)
2 1k8k_D P34, ARP2/3 complex 34 100.0 3.3E-99 1E-103 709.6 15.1 220 2-232 74-295 (300)
3 3dwl_F Actin-related protein 2 94.8 0.12 4.3E-06 45.0 8.7 119 75-214 48-167 (168)
4 1k8k_F P20, ARP2/3 complex 20 93.7 0.15 5.2E-06 44.5 6.9 118 75-213 48-166 (168)
5 2gdl_A Myeloid antimicrobial p 50.0 0.61 2.1E-05 29.8 -3.5 25 252-276 5-31 (31)
6 3fds_D DNA polymerase sliding 48.5 43 0.0015 29.1 6.9 99 53-168 135-244 (245)
7 2pp6_A Gifsy-2 prophage ATP-bi 43.9 5.3 0.00018 32.3 0.2 57 110-180 16-72 (102)
8 3lx2_A DNA polymerase sliding 25.0 88 0.003 27.3 5.0 84 77-172 154-251 (259)
9 3ifv_A PCNA; processivity fact 24.7 75 0.0026 27.6 4.4 83 77-168 151-243 (247)
10 2hew_F Tumor necrosis factor l 22.3 70 0.0024 27.3 3.5 33 76-108 68-105 (152)
No 1
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-101 Score=726.72 Aligned_cols=228 Identities=21% Similarity=0.398 Sum_probs=193.0
Q ss_pred hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcc-hHHHHHHHhHHHHHhHHHHHHHHHhhcCcc--------cc-
Q 022468 2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDS-MKVISEISMVQATILSSQLKEMLWTVNSED--------TF- 71 (296)
Q Consensus 2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~-~~li~~is~LKrn~lAApFe~af~~~~~~~--------~~- 71 (296)
|+|+++||+|+ .+||+||||||.|||++||+++|+ +++|+++|+||||||||||+++|+.++..+ .+
T Consensus 69 e~Lk~~Yg~~~---~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aapFe~~f~~~~~L~~~~~~~~~~~~ 145 (317)
T 3dwl_D 69 DLLKQIYGAYV---HEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPENAP 145 (317)
T ss_dssp HHHHHHSTTTE---ECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSHHHHHHHTHHHHCC----------C
T ss_pred HHHHHHhcccc---CCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccccccccc
Confidence 78999999997 579999999999999999998877 889999999999999999999998543210 11
Q ss_pred -----CCCccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccC-CCCCCC
Q 022468 72 -----QGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWA-PIPPPE 145 (296)
Q Consensus 72 -----~~~~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS-~ePPlE 145 (296)
.++.++++||||+||+|||+|++|||||||||+|+|+||+||||||||||+||||++++++||||+|| ++||+|
T Consensus 146 ~~~~~~~~~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlE 225 (317)
T 3dwl_D 146 MLDKQATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLE 225 (317)
T ss_dssp CCCHHHHTTTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSC
T ss_pred cccccccCCCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChH
Confidence 12568999999999999999999999999999999999999999999999999999889999999999 799999
Q ss_pred CCCCCCCCCCCCceEEEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhcCCCCCCcch
Q 022468 146 LRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQ 225 (296)
Q Consensus 146 Lr~~~~~~~~~n~GyVTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLNrAkpe~~~~ 225 (296)
|+|+++++.++|+|||||||||||++++.+++|||+|++|||||||||||||||||||||+||++|||||||||||.++|
T Consensus 226 L~~~~~~~~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vLnrAkpe~~~e 305 (317)
T 3dwl_D 226 IRDIQGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVELE 305 (317)
T ss_dssp CCSCC-------CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCC--
T ss_pred HhCCCccccCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 99999988999999999999999999988899999999999999999999999999999999999999999999998889
Q ss_pred hhhhcCC
Q 022468 226 TEKVQGN 232 (296)
Q Consensus 226 ~k~~~~~ 232 (296)
+||++||
T Consensus 306 kKT~sGr 312 (317)
T 3dwl_D 306 RKTATGR 312 (317)
T ss_dssp -------
T ss_pred ccccCCc
Confidence 9999997
No 2
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=100.00 E-value=3.3e-99 Score=709.59 Aligned_cols=220 Identities=24% Similarity=0.490 Sum_probs=196.8
Q ss_pred hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcchHHHHHHHhHHHHHhHHHHHHHHHhhcCccccCCCccceEEe
Q 022468 2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLV 81 (296)
Q Consensus 2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~li~~is~LKrn~lAApFe~af~~~~~~~~~~~~~~~~~I~ 81 (296)
|+|+++||+++ .+||+|||+||.|||++||+++ +++|+++|+||||||||||+++|+ ++++ +++++.+++||
T Consensus 74 e~Lk~~Yg~~v---~~pe~Gy~~tL~idl~~lp~~~--~~li~kia~LKrn~laapF~~~F~-~~~~--~~~~~~~~~I~ 145 (300)
T 1k8k_D 74 ELLKRVYGSYL---VNPESGYNVSLLYDLENLPASK--DSIVHQAGMLKRNCFASVFEKYFQ-FQEE--GKEGENRAVIH 145 (300)
T ss_dssp HHHHHHHGGGE---ESCCTTCSEEEEEETTSCCSCH--HHHHHHHHTHHHHHHHHHHHHHHH-HHHH--TCCSCCCEEEE
T ss_pred HHHHHHccccc---cCCCCCccEEEEEEHHHCCcCH--HHHHHHHHHHHHHHHHHHHHHHHH-HHhc--ccCCCceEEee
Confidence 78999999997 3799999999999999999985 459999999999999999999999 4433 33445569999
Q ss_pred ccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCceE
Q 022468 82 YHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAP-IPPPELRGEPFEDLSTNGGF 160 (296)
Q Consensus 82 YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~-ePPlELr~~~~~~~~~n~Gy 160 (296)
||++|+|||+|++|||||||||+|+|+||+||||||||||+||||+ +++||||+||+ +||+||+|++ ...++|+||
T Consensus 146 YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~--~~~APqvlfs~~~PPlEL~~~~-~~~~~n~gy 222 (300)
T 1k8k_D 146 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTAPQVLFSHREPPLELKDTD-AAVGDNIGY 222 (300)
T ss_dssp EETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTSCEEEEEESSCCGGGTTTT-CCCSTTEEE
T ss_pred cCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhc--cCCCCceecCCCCCChHHcCCc-cccCCCeEE
Confidence 9999999999999999999999999999999999999999999998 89999999997 9999999998 566999999
Q ss_pred EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhcCCCCCCc-chhhhhcCC
Q 022468 161 VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGED-EQTEKVQGN 232 (296)
Q Consensus 161 VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLNrAkpe~~-~~~k~~~~~ 232 (296)
|||||||||++++++++|||+||+|||||||||||||||||||||+||++|||||||||||.+ +++||++||
T Consensus 223 VTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLnRAkpe~~~~ekkT~sGr 295 (300)
T 1k8k_D 223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGK 295 (300)
T ss_dssp EEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC------------
T ss_pred EEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeccCc
Confidence 999999999999999999999999999999999999999999999999999999999999954 689999997
No 3
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.81 E-value=0.12 Score=44.97 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=96.4
Q ss_pred ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468 75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL 154 (296)
Q Consensus 75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~ 154 (296)
-.|+.|...+.|..+|+++-+.|-|.|.+.-.|+-+.++.+-|+. |.-.|- .+=+||-. .|-.
T Consensus 48 l~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RA-----e~f~ILRr---------kPv~-- 110 (168)
T 3dwl_F 48 LKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRA-----ESFFILRR---------KPVQ-- 110 (168)
T ss_dssp CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGT-----TTSTTBCS---------SCCT--
T ss_pred cCceEEeecCCceEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhcc-----cceEEeee---------CCcC--
Confidence 468999999999999999999999999999999999999999976 443432 22233332 1111
Q ss_pred CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 022468 155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVET 214 (296)
Q Consensus 155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkv 214 (296)
|| |||.+.-.|++.--..+-|+.|.+|=.-+---|.--|-.+.+|=|.=.++|++-
T Consensus 111 ----GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~~ 167 (168)
T 3dwl_F 111 ----GYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSC 167 (168)
T ss_dssp ----TCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred ----CcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 899999999986666899999999999999999999999999999888888864
No 4
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=93.67 E-value=0.15 Score=44.50 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=94.6
Q ss_pred ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468 75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL 154 (296)
Q Consensus 75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~ 154 (296)
-.|+.|...+.|..+|+++-+.|-|.+.+-..|+-+.++.+-|+. |.-.|- .+=+||-. -|-+
T Consensus 48 l~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RA-----e~f~ILRr--kPv~--------- 110 (168)
T 1k8k_F 48 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRA-----ENFFILRR--KPVE--------- 110 (168)
T ss_dssp CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTT-----TTSTTBCS--SCCT---------
T ss_pred ccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhcc-----cceEEeee--CCcC---------
Confidence 468999999999999999999999999999999999999999976 444442 22333333 1111
Q ss_pred CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 022468 155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVE 213 (296)
Q Consensus 155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lk 213 (296)
|| |||.+.--|++.--..+-|+.|.+|=.-+---|.--|-.+.+|=|.=.++|++
T Consensus 111 ----GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~A~~fl~ 166 (168)
T 1k8k_F 111 ----GYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166 (168)
T ss_dssp ----TCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----CccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 33 89999999998766789999999999888888888888888888887777775
No 5
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=49.99 E-value=0.61 Score=29.79 Aligned_cols=25 Identities=44% Similarity=0.891 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhee--Eeeeecchhhh
Q 022468 252 RKYGDFTRKIKKLR--FRIKIHGFRRF 276 (296)
Q Consensus 252 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 276 (296)
-||+.|.+||+|.+ ..|.|.|-.||
T Consensus 5 grfgrflrkirrfrpkvtitiqgsarf 31 (31)
T 2gdl_A 5 GRFGRFLRKIRRFRPKVTITIQGSARF 31 (31)
T ss_dssp HHHHSSSSSCCCCTTCCHHHHHHHHHC
T ss_pred cHHHHHHHHHHhcCCceEEEEeccccC
Confidence 46888899998876 56667777765
No 6
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=48.51 E-value=43 Score=29.08 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHhhcCccccCCCccceEEeccCCceEEEeecCC--eEEEEee------eee-ccCchhHHHHHHHHHHHH
Q 022468 53 ILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPL--KIAAVFP------MRF-KEHSDVIIATAFLQELTD 123 (296)
Q Consensus 53 ~lAApFe~af~~~~~~~~~~~~~~~~~I~YR~dE~iyI~~~~D--RVTVIFs------t~F-kD~~D~vigkvFLQEFvD 123 (296)
+-++.|.++++.+..- .+.+.|.--++ .+.+.+++| .+.+.++ ..+ .++.+..|.--+|.++..
T Consensus 135 ~~s~~f~~~i~~~~~~------s~~V~i~~~~~-~l~~s~~gd~g~~~~~l~~~~~~~~~~~~e~~~~~F~~~YL~~~~k 207 (245)
T 3fds_D 135 LLTITFADIIDELSDL------GEVLNIHSKEN-KLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTK 207 (245)
T ss_dssp EEHHHHHHHHHHHTTT------CSEEEEEEETT-EEEEEEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGG
T ss_pred EEHHHHHHHHHHHHhc------CCEEEEEEeCC-EEEEEEEecCcEEEEEEcCCCCceEEEecceEEEEEEHHHHHHHhh
Confidence 3367777777654211 13677776665 477777764 6777775 344 667778888888888875
Q ss_pred hccCCCCCCCCCccc--CCCCCCCCCCCCCCCCCCCceEEEEEecCC
Q 022468 124 VGSSKKWAKVPPCCW--APIPPPELRGEPFEDLSTNGGFVTFDIYPR 168 (296)
Q Consensus 124 aRr~~~i~~APqVlf--S~ePPlELr~~~~~~~~~n~GyVTFvLFpR 168 (296)
|- +.+.+|.. +.+-|+-|+=. . ++.||++|.|=||
T Consensus 208 a~-----~~s~~V~i~~~~~~Pl~l~~~----i-~~~g~~~y~laPr 244 (245)
T 3fds_D 208 MR-----RASDSMELYFGSQIPLKLRFK----L-PQEGYGDFYIAPR 244 (245)
T ss_dssp GG-----GTCSEEEEEECTTSCEEEEEE----C-STTCEEEEEECCC
T ss_pred hc-----ccCCEEEEEecCCccEEEEEE----e-CCCeEEEEEEeec
Confidence 53 34677754 45668777621 1 2368999999997
No 7
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=43.88 E-value=5.3 Score=32.31 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceEEEEEecCCCCCCcchhhhHH
Q 022468 110 DVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180 (296)
Q Consensus 110 D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~~~n~GyVTFvLFpRH~~~~~~~~TI~ 180 (296)
|.++..+|+-+ -.|+++|=..=..+-|.|+-++ |+-..|.|+|.--..+.+-|.++|
T Consensus 16 D~vi~~~Mg~~-------~~InG~~y~av~~e~~~emg~l-------sG~~rsLvvFSsgYrP~r~D~Vv~ 72 (102)
T 2pp6_A 16 DALIAERFGMK-------VNINGTDCIVVESDFLAELGPV-------EGNGKNVVVFSGNVIPRRGDRVVL 72 (102)
T ss_dssp HHHHHHHHCEE-------EEETTEEEEEEEGGGTC---------------CEEEEECCSSCCCCTTCEEEE
T ss_pred HHHHHHHhCCe-------EEECCEEeeeehhhhHHHhCCc-------cCCceEEEEecCCcccCCCCEEEE
Confidence 77777777632 1256666332222445666654 445678888865555544455544
No 8
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=25.04 E-value=88 Score=27.34 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=54.0
Q ss_pred ceEEeccCCceEEEeecC--CeEEEEee------eeec---cCchhHHHHHHHHHHHHhccCCCCCCCCCcc--cCCCCC
Q 022468 77 PIKLVYHPRETFYVIKQP--LKIAAVFP------MRFK---EHSDVIIATAFLQELTDVGSSKKWAKVPPCC--WAPIPP 143 (296)
Q Consensus 77 ~~~I~YR~dE~iyI~~~~--DRVTVIFs------t~Fk---D~~D~vigkvFLQEFvDaRr~~~i~~APqVl--fS~ePP 143 (296)
.+.|.--+ +.+.+.+++ +.+.+.++ ..|. ++....|.--+|.++..| ++.+.+|. |+.+-|
T Consensus 154 ~V~i~~~~-~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka-----~~~s~~V~l~~~~~~P 227 (259)
T 3lx2_A 154 SIYFMATP-EKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRS-----LADADEVIIRFGFDIP 227 (259)
T ss_dssp EEEEEECS-SCEEEEEECSSCEEEEEECTTSTTEEEEEESSSCEEEEEEHHHHHHHHSS-----SCTTSEEEEEECTTSC
T ss_pred EEEEEEEC-CEEEEEEEecCcEEEEEEcCCCCceEEEEecCceEEEEEEHHHHHhhhcc-----ccCCCeEEEEeCCCCC
Confidence 45665554 457777665 46777775 3455 567777777788877744 34566775 445668
Q ss_pred CCCC-CCCCCCCCCCceEEEEEecCCCCCC
Q 022468 144 PELR-GEPFEDLSTNGGFVTFDIYPRHIEG 172 (296)
Q Consensus 144 lELr-~~~~~~~~~n~GyVTFvLFpRH~~~ 172 (296)
+-|+ .++ +.||++|.|-|+--.|
T Consensus 228 l~l~~~i~------~~g~~~y~laP~~~~~ 251 (259)
T 3lx2_A 228 LLLKYMVR------DAGEVSFLIAPRVEEG 251 (259)
T ss_dssp EEEEEEET------TTEEEEEEECCCC---
T ss_pred EEEEEEeC------CCeEEEEEEccccCCC
Confidence 8776 331 3699999999987665
No 9
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=24.71 E-value=75 Score=27.60 Aligned_cols=83 Identities=17% Similarity=0.283 Sum_probs=55.5
Q ss_pred ceEEeccC-CceEEEeecCC--eEEEEee----eee-ccCchhHHHHHHHHHHHHhccCCCCCCCCCcc--cCCCCCCCC
Q 022468 77 PIKLVYHP-RETFYVIKQPL--KIAAVFP----MRF-KEHSDVIIATAFLQELTDVGSSKKWAKVPPCC--WAPIPPPEL 146 (296)
Q Consensus 77 ~~~I~YR~-dE~iyI~~~~D--RVTVIFs----t~F-kD~~D~vigkvFLQEFvDaRr~~~i~~APqVl--fS~ePPlEL 146 (296)
.+.|.--+ ++.+.+.+++| .+.+.++ ..+ .++....|.--+|.++..|= +.+.+|. |+.+-|+.|
T Consensus 151 ~V~i~~~~~~~~~~~s~~gd~g~~~~~l~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~-----~~s~~V~i~~~~~~Pl~l 225 (247)
T 3ifv_A 151 HIRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAI-----PTDAEVTVELGEEFPVKL 225 (247)
T ss_dssp EEEEEEETTTTEEEEEEECSSCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHHS-----CTTCEEEEEECBSSCEEE
T ss_pred EEEEEEECCCCEEEEEEEecceEEEEEECCCceEEEecCeEEEEEeHHHHHHhhhhc-----cCCCEEEEEecCCccEEE
Confidence 56676654 56777777764 5776665 233 45667778888888888664 3467775 445668887
Q ss_pred CCCCCCCCCCCceEEEEEecCC
Q 022468 147 RGEPFEDLSTNGGFVTFDIYPR 168 (296)
Q Consensus 147 r~~~~~~~~~n~GyVTFvLFpR 168 (296)
+=. .+.+.|||+|.|=||
T Consensus 226 ~~~----i~~~~g~~~~~lAPr 243 (247)
T 3ifv_A 226 HYQ----IAEGMGTITYMLAPR 243 (247)
T ss_dssp EEE----EGGGTEEEEEEECCC
T ss_pred EEE----EcCCcEEEEEEEeec
Confidence 631 222458999999997
No 10
>2hew_F Tumor necrosis factor ligand superfamily member 4; trimer, TNFSF, cytokine; HET: NAG; 1.45A {Mus musculus} SCOP: b.22.1.1 PDB: 2hey_F
Probab=22.31 E-value=70 Score=27.29 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=22.9
Q ss_pred cceEEeccCCce-EEEeecC--Ce--EEEEeeeeeccC
Q 022468 76 KPIKLVYHPRET-FYVIKQP--LK--IAAVFPMRFKEH 108 (296)
Q Consensus 76 ~~~~I~YR~dE~-iyI~~~~--DR--VTVIFst~FkD~ 108 (296)
-.+.+|||++|. +||..-+ .+ -++|-+..|+|+
T Consensus 68 ~sI~l~YRk~~~plf~~~L~~~~~V~sv~Va~L~fKDk 105 (152)
T 2hew_F 68 VKIDLHFREDHNPISIPMLNDGRRIVFTVVASLAFKDK 105 (152)
T ss_dssp CCEEEECCTTSCCEEECCCTTSSEEEEEEEEEECTTCE
T ss_pred cEEEEEEecCCCccchhhhhccceEeEEEEEEEeeccE
Confidence 368999999776 7744322 22 356778999984
Done!