Query 022469
Match_columns 296
No_of_seqs 338 out of 2274
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2803 Choline phosphate cyti 100.0 1.2E-72 2.7E-77 522.7 19.0 240 47-295 4-244 (358)
2 PLN02406 ethanolamine-phosphat 100.0 5.5E-67 1.2E-71 508.7 25.6 286 7-295 3-297 (418)
3 PTZ00308 ethanolamine-phosphat 100.0 2E-57 4.3E-62 436.3 25.8 232 47-295 7-238 (353)
4 cd02174 CCT CTP:phosphocholine 100.0 3E-32 6.4E-37 233.8 17.8 138 50-191 1-140 (150)
5 PLN02413 choline-phosphate cyt 100.0 4.1E-32 9E-37 251.7 17.3 141 45-189 21-165 (294)
6 COG0615 TagD Cytidylyltransfer 100.0 2.3E-31 4.9E-36 224.6 12.9 131 52-188 2-139 (140)
7 cd02173 ECT CTP:phosphoethanol 100.0 8.3E-30 1.8E-34 219.0 17.4 133 52-188 3-139 (152)
8 PLN02406 ethanolamine-phosphat 100.0 4.2E-30 9.1E-35 250.7 16.9 145 40-188 240-389 (418)
9 KOG2804 Phosphorylcholine tran 100.0 6.8E-31 1.5E-35 243.4 10.8 138 47-188 59-198 (348)
10 PTZ00308 ethanolamine-phosphat 100.0 1.1E-28 2.5E-33 237.4 16.5 138 47-188 188-329 (353)
11 cd02170 cytidylyltransferase c 100.0 4.5E-28 9.8E-33 202.8 16.3 132 52-188 2-135 (136)
12 cd02172 RfaE_N N-terminal doma 100.0 7E-28 1.5E-32 205.0 17.0 131 52-188 5-141 (144)
13 TIGR02199 rfaE_dom_II rfaE bif 99.9 1.5E-26 3.3E-31 196.7 17.4 129 52-187 12-143 (144)
14 TIGR01518 g3p_cytidyltrns glyc 99.9 3.4E-26 7.3E-31 189.5 14.2 123 54-186 1-125 (125)
15 cd02171 G3P_Cytidylyltransfera 99.9 2.2E-25 4.7E-30 185.0 15.7 126 52-188 2-128 (129)
16 cd02064 FAD_synthetase_N FAD s 99.9 9.8E-23 2.1E-27 178.9 13.6 134 54-189 2-158 (180)
17 PRK11316 bifunctional heptose 99.9 2.4E-22 5.3E-27 198.7 18.1 131 51-187 340-472 (473)
18 PRK07143 hypothetical protein; 99.9 4.4E-22 9.5E-27 186.4 17.0 135 52-189 16-162 (279)
19 PRK05627 bifunctional riboflav 99.9 3.2E-22 7E-27 189.5 15.5 135 53-189 15-173 (305)
20 KOG2803 Choline phosphate cyti 99.9 2.5E-22 5.4E-27 187.5 8.4 144 40-188 187-332 (358)
21 PF06574 FAD_syn: FAD syntheta 99.8 9.1E-21 2E-25 163.8 10.5 130 50-181 4-157 (157)
22 TIGR00083 ribF riboflavin kina 99.8 9.1E-20 2E-24 171.5 15.6 134 54-189 1-156 (288)
23 COG2870 RfaE ADP-heptose synth 99.8 2.5E-19 5.5E-24 172.7 12.9 130 53-188 334-465 (467)
24 COG0196 RibF FAD synthase [Coe 99.8 5.1E-19 1.1E-23 167.3 13.7 137 51-189 15-173 (304)
25 cd02039 cytidylyltransferase_l 99.8 2.5E-18 5.4E-23 142.1 12.0 129 54-185 2-143 (143)
26 PRK00777 phosphopantetheine ad 99.7 3.8E-18 8.2E-23 146.9 6.4 132 52-189 2-145 (153)
27 smart00764 Citrate_ly_lig Citr 99.6 3.7E-15 8E-20 131.8 14.2 124 59-189 7-165 (182)
28 TIGR01527 arch_NMN_Atrans nico 99.6 3.1E-15 6.7E-20 130.4 12.5 125 53-189 1-136 (165)
29 cd02169 Citrate_lyase_ligase C 99.6 1.1E-14 2.4E-19 137.7 17.1 131 51-189 114-280 (297)
30 PRK00168 coaD phosphopantethei 99.6 1.7E-14 3.7E-19 124.5 14.6 126 52-189 2-138 (159)
31 cd02163 PPAT Phosphopantethein 99.6 4.1E-14 8.8E-19 121.5 12.0 124 54-189 2-136 (153)
32 PRK01170 phosphopantetheine ad 99.5 3.2E-14 7E-19 135.6 11.1 127 53-189 2-142 (322)
33 PF01467 CTP_transf_2: Cytidyl 99.5 1.2E-14 2.6E-19 120.7 7.1 130 55-185 1-157 (157)
34 PLN02388 phosphopantetheine ad 99.5 2.7E-14 5.8E-19 125.8 9.3 137 46-191 14-169 (177)
35 cd02166 NMNAT_Archaea Nicotina 99.5 1.9E-13 4.2E-18 118.6 13.2 126 53-188 1-137 (163)
36 PLN02413 choline-phosphate cyt 99.5 1.6E-14 3.4E-19 134.8 6.8 52 245-296 23-76 (294)
37 TIGR00125 cyt_tran_rel cytidyl 99.5 4.6E-14 1E-18 103.4 7.3 64 53-116 1-64 (66)
38 TIGR01510 coaD_prev_kdtB pante 99.5 9.4E-13 2E-17 113.2 13.5 120 54-189 2-136 (155)
39 cd02164 PPAT_CoAS phosphopante 99.4 3.2E-13 6.9E-18 115.2 7.5 122 53-185 1-143 (143)
40 cd02165 NMNAT Nicotinamide/nic 99.4 8.9E-12 1.9E-16 110.1 14.7 132 54-189 2-171 (192)
41 PRK00071 nadD nicotinic acid m 99.4 1.7E-11 3.7E-16 109.4 15.6 134 51-188 4-179 (203)
42 COG1057 NadD Nicotinic acid mo 99.4 1.3E-11 2.8E-16 110.6 14.2 136 50-189 2-174 (197)
43 COG0615 TagD Cytidylyltransfer 99.4 7.4E-13 1.6E-17 112.3 5.2 46 251-296 3-49 (140)
44 PRK13964 coaD phosphopantethei 99.3 1.8E-11 4E-16 104.2 12.9 123 52-187 2-137 (140)
45 cd02168 NMNAT_Nudix Nicotinami 99.3 5E-12 1.1E-16 111.7 9.0 128 54-189 2-145 (181)
46 PRK01153 nicotinamide-nucleoti 99.3 2.6E-11 5.7E-16 106.5 13.4 126 53-189 2-139 (174)
47 TIGR00482 nicotinate (nicotina 99.3 4.2E-11 9.1E-16 106.2 13.7 130 55-188 1-171 (193)
48 COG2870 RfaE ADP-heptose synth 99.3 1.5E-12 3.2E-17 126.3 4.5 47 249-295 332-378 (467)
49 PRK05379 bifunctional nicotina 99.3 5.9E-11 1.3E-15 114.2 14.8 133 50-190 5-151 (340)
50 PRK08887 nicotinic acid mononu 99.3 8E-11 1.7E-15 103.3 14.1 131 53-189 4-149 (174)
51 cd02167 NMNAT_NadR Nicotinamid 99.2 8.8E-11 1.9E-15 101.6 11.7 126 54-187 2-147 (158)
52 PRK06973 nicotinic acid mononu 99.2 1.5E-10 3.2E-15 106.9 13.4 114 53-171 24-154 (243)
53 COG0669 CoaD Phosphopantethein 99.2 4.6E-11 1E-15 102.7 9.3 88 51-147 2-90 (159)
54 PRK07152 nadD putative nicotin 99.2 2.9E-10 6.2E-15 109.3 14.6 133 53-189 3-168 (342)
55 COG1019 Predicted nucleotidylt 99.2 9.7E-11 2.1E-15 100.2 9.4 127 49-185 3-145 (158)
56 PRK13670 hypothetical protein; 99.1 3.7E-10 8.1E-15 110.6 10.5 91 55-148 5-103 (388)
57 PRK08099 bifunctional DNA-bind 99.1 1.8E-09 3.9E-14 106.1 15.2 132 50-188 51-205 (399)
58 cd09286 NMNAT_Eukarya Nicotina 99.0 3E-09 6.5E-14 97.0 12.4 85 53-138 2-98 (225)
59 PRK13793 nicotinamide-nucleoti 99.0 1.7E-09 3.6E-14 96.9 10.3 59 52-112 5-63 (196)
60 cd02170 cytidylyltransferase c 99.0 9.8E-10 2.1E-14 91.8 5.9 46 249-294 1-46 (136)
61 TIGR01518 g3p_cytidyltrns glyc 98.9 8.6E-10 1.9E-14 91.3 4.9 43 252-294 1-43 (125)
62 PRK11316 bifunctional heptose 98.9 1E-09 2.2E-14 109.0 5.7 50 246-295 337-386 (473)
63 KOG2804 Phosphorylcholine tran 98.9 7.5E-10 1.6E-14 103.8 4.4 47 249-295 63-111 (348)
64 PLN02945 nicotinamide-nucleoti 98.9 2.9E-08 6.3E-13 91.1 14.7 101 48-149 19-140 (236)
65 TIGR00125 cyt_tran_rel cytidyl 98.9 1.4E-09 3.1E-14 79.4 4.9 44 251-294 1-44 (66)
66 TIGR02199 rfaE_dom_II rfaE bif 98.9 1.3E-09 2.9E-14 92.7 5.2 47 248-294 10-56 (144)
67 PRK13671 hypothetical protein; 98.9 8.2E-09 1.8E-13 97.8 10.4 89 56-149 5-103 (298)
68 cd02172 RfaE_N N-terminal doma 98.9 3.5E-09 7.6E-14 90.2 6.4 47 248-294 3-49 (144)
69 cd00560 PanC Pantoate-beta-ala 98.9 4.2E-09 9E-14 99.0 6.9 118 43-165 15-161 (277)
70 TIGR00124 cit_ly_ligase [citra 98.9 4.1E-08 8.9E-13 94.5 13.7 128 51-187 139-307 (332)
71 cd02156 nt_trans nucleotidyl t 98.8 5.1E-09 1.1E-13 83.9 5.8 57 54-112 2-58 (105)
72 cd02171 G3P_Cytidylyltransfera 98.7 2E-08 4.3E-13 83.2 5.8 40 250-289 2-41 (129)
73 PRK00380 panC pantoate--beta-a 98.7 3.2E-08 6.8E-13 93.3 6.4 108 52-165 25-160 (281)
74 COG1056 NadR Nicotinamide mono 98.6 2.3E-07 4.9E-12 81.6 9.7 60 50-111 2-61 (172)
75 TIGR01526 nadR_NMN_Atrans nico 98.5 2.4E-07 5.2E-12 88.7 7.9 63 53-117 3-66 (325)
76 KOG3351 Predicted nucleotidylt 98.2 2.6E-06 5.6E-11 78.5 7.1 135 45-187 136-285 (293)
77 PLN02388 phosphopantetheine ad 98.1 3.8E-06 8.3E-11 74.3 5.2 48 244-291 14-62 (177)
78 PRK13964 coaD phosphopantethei 98.0 5.9E-06 1.3E-10 70.5 4.9 38 250-287 2-39 (140)
79 PF08218 Citrate_ly_lig: Citra 98.0 5.6E-05 1.2E-09 66.8 10.7 122 59-189 7-165 (182)
80 TIGR00018 panC pantoate--beta- 98.0 3.1E-05 6.7E-10 73.1 9.3 75 42-120 14-92 (282)
81 PF05636 HIGH_NTase1: HIGH Nuc 98.0 1.3E-05 2.8E-10 78.9 6.5 90 56-149 6-104 (388)
82 cd02156 nt_trans nucleotidyl t 98.0 9.9E-06 2.2E-10 64.8 4.5 39 252-290 2-40 (105)
83 PLN02660 pantoate--beta-alanin 97.9 5.1E-05 1.1E-09 71.7 9.4 76 41-120 12-91 (284)
84 COG1323 Predicted nucleotidylt 97.7 0.0001 2.2E-09 71.8 7.4 87 59-149 9-104 (358)
85 KOG3351 Predicted nucleotidylt 97.6 5.5E-05 1.2E-09 69.9 4.0 51 242-292 135-186 (293)
86 COG3053 CitC Citrate lyase syn 97.1 0.013 2.8E-07 55.8 13.4 130 47-187 142-314 (352)
87 PRK08099 bifunctional DNA-bind 97.1 0.00062 1.3E-08 67.3 4.7 39 249-287 52-90 (399)
88 TIGR00339 sopT ATP sulphurylas 97.0 0.0089 1.9E-07 58.9 12.5 106 39-150 172-290 (383)
89 PRK07143 hypothetical protein; 97.0 0.0014 3E-08 62.0 5.7 40 249-288 15-54 (279)
90 TIGR00124 cit_ly_ligase [citra 96.9 0.0011 2.5E-08 63.9 4.8 39 247-285 137-175 (332)
91 PRK05627 bifunctional riboflav 96.8 0.00088 1.9E-08 64.0 3.5 38 251-288 15-55 (305)
92 PF02569 Pantoate_ligase: Pant 96.0 0.054 1.2E-06 51.4 9.8 78 40-120 12-92 (280)
93 cd02169 Citrate_lyase_ligase C 95.8 0.013 2.9E-07 55.7 5.0 38 248-285 113-150 (297)
94 PRK13477 bifunctional pantoate 95.4 0.067 1.4E-06 54.7 8.7 67 53-120 21-90 (512)
95 PRK04149 sat sulfate adenylylt 95.2 1 2.3E-05 44.6 16.0 106 39-150 175-291 (391)
96 COG0414 PanC Panthothenate syn 95.0 0.13 2.9E-06 48.5 8.7 74 44-120 16-92 (285)
97 PRK06973 nicotinic acid mononu 94.9 0.039 8.5E-07 51.1 4.9 38 249-286 22-61 (243)
98 cd00517 ATPS ATP-sulfurylase. 94.8 1.9 4.2E-05 42.2 16.6 106 39-150 145-263 (353)
99 PF01747 ATP-sulfurylase: ATP- 94.8 0.77 1.7E-05 41.9 12.8 106 39-150 9-126 (215)
100 PLN02945 nicotinamide-nucleoti 94.1 0.054 1.2E-06 49.7 3.8 29 247-275 20-48 (236)
101 KOG3042 Panthothenate syntheta 93.4 0.31 6.7E-06 44.8 7.2 76 41-119 15-93 (283)
102 COG2046 MET3 ATP sulfurylase ( 93.3 2.5 5.5E-05 41.7 13.7 147 39-191 172-359 (397)
103 PF02569 Pantoate_ligase: Pant 90.5 0.21 4.6E-06 47.3 2.9 36 248-286 21-58 (280)
104 PLN02341 pfkB-type carbohydrat 90.3 0.051 1.1E-06 54.7 -1.5 44 231-276 398-441 (470)
105 PRK05537 bifunctional sulfate 89.4 6.5 0.00014 40.8 13.0 107 39-150 175-291 (568)
106 PRK13477 bifunctional pantoate 88.4 0.45 9.8E-06 48.8 3.7 34 250-284 21-54 (512)
107 PRK00380 panC pantoate--beta-a 88.2 0.74 1.6E-05 43.7 4.7 39 248-287 21-59 (281)
108 COG0414 PanC Panthothenate syn 87.6 0.57 1.2E-05 44.3 3.5 39 247-286 20-58 (285)
109 TIGR00018 panC pantoate--beta- 86.9 0.83 1.8E-05 43.4 4.3 37 248-287 21-59 (282)
110 cd00560 PanC Pantoate-beta-ala 86.9 0.83 1.8E-05 43.3 4.2 37 248-287 21-59 (277)
111 PLN02660 pantoate--beta-alanin 85.3 1.2 2.5E-05 42.5 4.3 37 248-287 20-58 (284)
112 cd02174 CCT CTP:phosphocholine 84.1 0.8 1.7E-05 39.3 2.5 36 259-296 15-51 (150)
113 COG0196 RibF FAD synthase [Coe 79.2 1.6 3.4E-05 42.0 2.8 28 249-276 15-42 (304)
114 KOG3199 Nicotinamide mononucle 78.9 7.4 0.00016 35.7 6.8 63 48-111 5-72 (234)
115 KOG3042 Panthothenate syntheta 72.9 6.1 0.00013 36.5 4.6 38 248-286 23-60 (283)
116 COG0159 TrpA Tryptophan syntha 65.9 78 0.0017 30.0 10.6 81 41-136 84-168 (265)
117 PLN02341 pfkB-type carbohydrat 53.4 3.2 6.9E-05 41.8 -1.0 29 50-78 413-441 (470)
118 COG0162 TyrS Tyrosyl-tRNA synt 48.6 1.2E+02 0.0027 30.3 9.2 26 51-78 32-61 (401)
119 TIGR00339 sopT ATP sulphurylas 48.1 24 0.00052 35.0 4.2 31 251-281 185-217 (383)
120 PRK13111 trpA tryptophan synth 43.1 2.7E+02 0.0059 25.9 10.2 75 53-143 91-169 (258)
121 COG3053 CitC Citrate lyase syn 42.8 41 0.00089 32.6 4.7 40 246-285 142-181 (352)
122 PF14258 DUF4350: Domain of un 37.2 1.2E+02 0.0025 21.9 5.5 36 247-282 34-69 (70)
123 PRK00536 speE spermidine synth 32.6 47 0.001 31.2 3.4 91 47-146 69-169 (262)
124 PF13651 EcoRI_methylase: Aden 28.1 1E+02 0.0022 30.2 4.8 46 100-149 124-169 (336)
125 COG2355 Zn-dependent dipeptida 27.5 1.4E+02 0.0031 28.9 5.8 91 60-153 165-266 (313)
126 PRK11866 2-oxoacid ferredoxin 26.5 76 0.0016 30.1 3.7 48 246-294 75-122 (279)
127 cd02018 TPP_PFOR Thiamine pyro 26.4 1.1E+02 0.0023 28.0 4.6 44 244-288 83-126 (237)
128 PRK13354 tyrosyl-tRNA syntheta 25.7 2.3E+02 0.0051 28.3 7.1 37 39-78 22-62 (410)
129 TIGR02177 PorB_KorB 2-oxoacid: 25.0 90 0.002 29.7 3.9 44 246-290 69-112 (287)
130 COG4778 PhnL ABC-type phosphon 24.3 77 0.0017 28.8 3.0 26 265-291 191-216 (235)
131 PRK02615 thiamine-phosphate py 24.1 3E+02 0.0065 27.0 7.4 26 61-86 219-246 (347)
132 cd00953 KDG_aldolase KDG (2-ke 24.1 5.1E+02 0.011 24.0 8.8 55 98-152 47-104 (279)
133 cd00951 KDGDH 5-dehydro-4-deox 23.0 4.1E+02 0.009 24.7 7.9 88 65-160 21-115 (289)
134 PLN02428 lipoic acid synthase 22.6 4.1E+02 0.0088 26.1 8.0 49 101-149 260-324 (349)
135 PRK05198 2-dehydro-3-deoxyphos 22.0 63 0.0014 30.6 2.1 57 59-115 187-260 (264)
136 COG1064 AdhP Zn-dependent alco 21.4 4.3E+02 0.0093 25.9 7.8 91 53-173 169-260 (339)
137 PRK09989 hypothetical protein; 21.3 2.9E+02 0.0063 24.9 6.4 47 100-147 15-61 (258)
138 cd00408 DHDPS-like Dihydrodipi 20.9 3.8E+02 0.0083 24.5 7.2 55 98-152 45-105 (281)
139 COG0352 ThiE Thiamine monophos 20.6 3.2E+02 0.0069 24.9 6.4 11 138-148 123-133 (211)
140 PF02129 Peptidase_S15: X-Pro 20.2 1.3E+02 0.0029 27.3 3.9 37 248-284 228-268 (272)
No 1
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-72 Score=522.72 Aligned_cols=240 Identities=58% Similarity=0.988 Sum_probs=218.5
Q ss_pred cCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCc
Q 022469 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI 126 (296)
Q Consensus 47 ~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~ 126 (296)
.+.++.|||++||||++|+||+++|+|||++|++|+||||+|++|..+||+|+|+.+||++|+++||||||||.++||.+
T Consensus 4 ~~~~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvt 83 (358)
T KOG2803|consen 4 KKNRPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVT 83 (358)
T ss_pred cCCCceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeec
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhhchhcCcccCcCCcchhhh
Q 022469 127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQR 206 (296)
Q Consensus 127 t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~ 206 (296)
+.+++ ++|+|||||||+|++..++|.|+|.+.|.+|++++++||+|||||+|++||++.++.++ ++++.......
T Consensus 84 t~~~m----d~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~-~~~~~~~~~e~ 158 (358)
T KOG2803|consen 84 TLEWM----DKYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH-SDEVSSSQREL 158 (358)
T ss_pred cHHHH----HHhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC-ccccchhhhhh
Confidence 99998 57999999999999999999999999999999999999999999999999999999877 33222222222
Q ss_pred hhccCCCccccccccc-cccccccccccceeeeccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 022469 207 QFSHGHNQKVEERGSG-GTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285 (296)
Q Consensus 207 ~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~ 285 (296)
.++.+.. +...+ |+++++|+||+++|+||++|++|+|++++||++|+|||||+||+++|++||.+||||||||++
T Consensus 159 ~~~~g~~----~~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~ 234 (358)
T KOG2803|consen 159 SFSSGTD----DDGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHT 234 (358)
T ss_pred hhccccC----CcccCCccceeeeeecCccceEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeec
Confidence 2333222 22344 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCC
Q 022469 286 DQTVRLKNPS 295 (296)
Q Consensus 286 d~~~~~~k~~ 295 (296)
|+++|++||+
T Consensus 235 D~~vneykgs 244 (358)
T KOG2803|consen 235 DQTVNEYKGS 244 (358)
T ss_pred CcchhhhccC
Confidence 9999999986
No 2
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=5.5e-67 Score=508.70 Aligned_cols=286 Identities=82% Similarity=1.279 Sum_probs=251.4
Q ss_pred ccchhhhhhhhhhhhhhhhHhhhhHHhhcCCc--------hHHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhc
Q 022469 7 EQSARILATCLIAGAVMVAGFSLLTLYLAAPN--------DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG 78 (296)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lg 78 (296)
.++++++++|++|++ ++++|+|||++.+.. -.-..+.+++.++.|||++||||++|.||+++|+||+++|
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG 80 (418)
T PLN02406 3 ISSAKYVASCLIGGL--MLGASVLGLSLAGFGSSLPYAWPDLGIFKKKKKKKPVRVYMDGCFDMMHYGHANALRQARALG 80 (418)
T ss_pred ccccceeeehhhHHH--HHHHHHHHHHhccccccccccchhhhhhccccCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC
Confidence 356788999999999 899999999886432 1111134577788999999999999999999999999999
Q ss_pred CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCccHHHHHHHHHhcCccEEEEcCCCCcCCCCCch
Q 022469 79 DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDA 158 (296)
Q Consensus 79 d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~ 158 (296)
|+|+|||++|+++..+|++|+++++||++++++|+|||+|++++||.++.+|+.+++++++||++|||+||+..+++.|+
T Consensus 81 d~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g~d~ 160 (418)
T PLN02406 81 DELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDA 160 (418)
T ss_pred CEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCccccCCchHH
Confidence 99999999999998899999999999999999999999999999999999999888889999999999999988899999
Q ss_pred HHHHHHCCeEEEcCCCCCCCHHHHHHHHhhchhcCcccCcCCcchhhhhhccCCCccccccccc-cccccccccccceee
Q 022469 159 YELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRIV 237 (296)
Q Consensus 159 y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~i~ 237 (296)
|...+.+|++++++|++++|||+|++||++++|+|+....++...++++|+.+... .+..+.. ++++++|++|+++|+
T Consensus 161 y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~i~ 239 (418)
T PLN02406 161 YALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQ-FEDGGSGSGTRVSHFLPTSRRIV 239 (418)
T ss_pred HHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhcccccc-ccccCCCCCCCcccccccHHHHH
Confidence 99999999999999999999999999999999998764433444555556543322 1122222 677899999999999
Q ss_pred eccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCCC
Q 022469 238 QFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPS 295 (296)
Q Consensus 238 ~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~~ 295 (296)
||++|++|+|++++||++|+|||||+||+++|++||++||+|||||++|+.++++||+
T Consensus 240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~ 297 (418)
T PLN02406 240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGA 297 (418)
T ss_pred HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999983
No 3
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=2e-57 Score=436.26 Aligned_cols=232 Identities=50% Similarity=0.877 Sum_probs=207.9
Q ss_pred cCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCc
Q 022469 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI 126 (296)
Q Consensus 47 ~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~ 126 (296)
++.+.+|||++||||++|.||+++|+||+++|+.|+||+++|+++.+.|++|+++++||++++++|+|||+|+++.||+.
T Consensus 7 ~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~ 86 (353)
T PTZ00308 7 KKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTT 86 (353)
T ss_pred CCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCc
Confidence 45566899999999999999999999999999999999999999988888889999999999999999999999889987
Q ss_pred cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhhchhcCcccCcCCcchhhh
Q 022469 127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQR 206 (296)
Q Consensus 127 t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~ 206 (296)
+.+|+ ++++||+||||+||+||.+|.++|+.+++.|++++++|++++|||+|++||++++++|+.... ..+
T Consensus 87 ~~~fI----~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~--~~~--- 157 (353)
T PTZ00308 87 RLEDL----ERLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSV--DEV--- 157 (353)
T ss_pred hHHHH----HHhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccc--ccc---
Confidence 77776 568999999999999999999999999999999999999999999999999999998764211 000
Q ss_pred hhccCCCccccccccccccccccccccceeeeccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 022469 207 QFSHGHNQKVEERGSGGTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (296)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d 286 (296)
++ ......|++.++|++|+++|+||+.+..|++++++||++|+||+||.||+++|++|+++||+|||||++|
T Consensus 158 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD 229 (353)
T PTZ00308 158 QL--------ESSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHED 229 (353)
T ss_pred cc--------ccccccCCCcceeecchhheeeccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcch
Confidence 00 0111126778899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCC
Q 022469 287 QTVRLKNPS 295 (296)
Q Consensus 287 ~~~~~~k~~ 295 (296)
++++.+||+
T Consensus 230 ~~v~~~Kg~ 238 (353)
T PTZ00308 230 QVVNEQKGS 238 (353)
T ss_pred HHhHhhcCC
Confidence 999999873
No 4
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=100.00 E-value=3e-32 Score=233.76 Aligned_cols=138 Identities=59% Similarity=1.031 Sum_probs=127.3
Q ss_pred CCeEEEEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCcc
Q 022469 50 KPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAIT 127 (296)
Q Consensus 50 ~~~rV~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t 127 (296)
+++|||+.|+||++|.||+++|++|+++| ++|+|||++|+.+..+|++|+++++||.+++++|+|||+|+++.|+.++
T Consensus 1 ~~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 1 RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred CCeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 35789999999999999999999999999 9999999999998888888999999999999999999999998888777
Q ss_pred HHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhhchh
Q 022469 128 KDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVR 191 (296)
Q Consensus 128 ~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~~~~ 191 (296)
.+|+ ++++||++++|+||..+..+.+.|+.+++.|+++++++++++|||.|++||+....
T Consensus 81 ~~~i----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~ 140 (150)
T cd02174 81 PEFL----DKYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYR 140 (150)
T ss_pred HHHH----HHhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHH
Confidence 7776 46899999999999887777788999999999999999999999999999987654
No 5
>PLN02413 choline-phosphate cytidylyltransferase
Probab=100.00 E-value=4.1e-32 Score=251.67 Aligned_cols=141 Identities=41% Similarity=0.727 Sum_probs=128.8
Q ss_pred hhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcC
Q 022469 45 TRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDA 122 (296)
Q Consensus 45 ~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~ 122 (296)
.++..++++||++||||++|.||+++|+||++++ ++|+|||++|+.+.+.||+|+|+++||+++|++|+|||+|++++
T Consensus 21 ~~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~a 100 (294)
T PLN02413 21 SSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDA 100 (294)
T ss_pred CCCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCC
Confidence 4567899999999999999999999999999996 79999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCccEEEEcCCCCcCC--CCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhhc
Q 022469 123 PYAITKDFMKKLFDEYNIDYIIHGDDPCVLP--DGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC 189 (296)
Q Consensus 123 py~~t~efl~~ll~~~~~d~VV~GdD~~fg~--~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~~ 189 (296)
||.++.+||+ +++||+||||+++.... .+.|.|..+++.|++..++|++++|||+|++||+..
T Consensus 101 P~~~t~efI~----~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~ 165 (294)
T PLN02413 101 PWVITQEFLD----KHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKD 165 (294)
T ss_pred CccccHHHHH----HhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHH
Confidence 9998888874 68999999998665332 456899999999999999999999999999999854
No 6
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.97 E-value=2.3e-31 Score=224.59 Aligned_cols=131 Identities=41% Similarity=0.724 Sum_probs=116.8
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhh-cCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCccHHH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIA-NKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF 130 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~-~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~ef 130 (296)
+|||++||||++|+||+++|+||+++|++|+|++..|+.+.. +|++|+++++||++++++|+|||+|++++||+++.++
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~ 81 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED 81 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence 579999999999999999999999999999888888877655 6668999999999999999999999999999988888
Q ss_pred HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCC------CCHHHHHHHHhh
Q 022469 131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEG------VSSTDIVGRMLL 188 (296)
Q Consensus 131 l~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~------VSST~Ir~rIl~ 188 (296)
+ ++++||+|++|+|+. +..+.+.|.+.+ .|.+.+++|+++ +||++|+++++.
T Consensus 82 i----~~~k~Div~lG~D~~-~d~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 82 I----EEYKPDIVVLGDDQK-FDEDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred H----HHhCCCEEEECCCCc-CChHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 7 468999999999999 556667777766 999999999987 889999998863
No 7
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.97 E-value=8.3e-30 Score=219.01 Aligned_cols=133 Identities=41% Similarity=0.751 Sum_probs=121.0
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHhcCCccEEEEcCCCCccHH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITKD 129 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~e 129 (296)
..||+.|+||++|.||+++|++|+++|++|+|||++|+.+...|+ +|+++++||++++++|+|||+|++..|+.++.+
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~~ 82 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITKE 82 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchHH
Confidence 469999999999999999999999999999999999998887786 599999999999999999999999888777777
Q ss_pred HHHHHHHhcCccEEEEcCCCCcC--CCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhh
Q 022469 130 FMKKLFDEYNIDYIIHGDDPCVL--PDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (296)
Q Consensus 130 fl~~ll~~~~~d~VV~GdD~~fg--~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~ 188 (296)
|+ ++++||++++|+|+... ..+.+.|..++..|++..+++++++|||+|++||+.
T Consensus 83 ~~----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~ 139 (152)
T cd02173 83 LI----EHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIK 139 (152)
T ss_pred HH----HHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 76 56899999999999754 346678999999999999999999999999999973
No 8
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.97 E-value=4.2e-30 Score=250.68 Aligned_cols=145 Identities=34% Similarity=0.645 Sum_probs=130.5
Q ss_pred HHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHhcCCccE
Q 022469 40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDE 117 (296)
Q Consensus 40 ~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~~k~VD~ 117 (296)
++.+...+++...+||++||||++|.||+++|++|+++|+.|+|||++|+.+..+|| +|+|+++||.+++++|+|||+
T Consensus 240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~ 319 (418)
T PLN02406 240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDE 319 (418)
T ss_pred HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccE
Confidence 334444566677889999999999999999999999999999999999999988887 699999999999999999999
Q ss_pred EEEcCCCCccHHHHHHHHHhcCccEEEEcCCCC---cCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhh
Q 022469 118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPC---VLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (296)
Q Consensus 118 Vv~~~py~~t~efl~~ll~~~~~d~VV~GdD~~---fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~ 188 (296)
|++++||.++.+++ ++++||++|||+|+. +..++.|.|...+++|+++++++++++|||+|++||+.
T Consensus 320 VVi~ap~~~~~~~i----~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~ 389 (418)
T PLN02406 320 VIIGAPWEVSKDMI----TTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVA 389 (418)
T ss_pred EEeCCCCCCCHHHH----HHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHH
Confidence 99999999888887 468999999999763 34456799999999999999999999999999999985
No 9
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=99.97 E-value=6.8e-31 Score=243.38 Aligned_cols=138 Identities=41% Similarity=0.688 Sum_probs=128.6
Q ss_pred cCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCC
Q 022469 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPY 124 (296)
Q Consensus 47 ~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py 124 (296)
+..+++|||++|.||+||+||++.|+||+.++ -+|+|||.+|+...+.||..+|+..||++.|+.|||||+|+.++||
T Consensus 59 p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW 138 (348)
T KOG2804|consen 59 PTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPW 138 (348)
T ss_pred CCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCc
Confidence 47899999999999999999999999999998 4799999999988899999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhh
Q 022469 125 AITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (296)
Q Consensus 125 ~~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~ 188 (296)
.+++||| +++++|+|.|-+-|.-..+..|.|..+|+.|+|...+||+||||++|+-||..
T Consensus 139 ~lt~EFL----~~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVr 198 (348)
T KOG2804|consen 139 TLTPEFL----EKHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVR 198 (348)
T ss_pred cccHHHH----HhcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHH
Confidence 9999998 46899999998877765555689999999999999999999999999999974
No 10
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.96 E-value=1.1e-28 Score=237.39 Aligned_cols=138 Identities=36% Similarity=0.635 Sum_probs=125.5
Q ss_pred cCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHhcCCccEEEEcCCC
Q 022469 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPY 124 (296)
Q Consensus 47 ~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~~k~VD~Vv~~~py 124 (296)
++...++||+.||||++|.||+++|++|+++||+|+|||++|+.+...|+ +|+|+++||++++++|+|||+|++.+|+
T Consensus 188 ~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~ 267 (353)
T PTZ00308 188 PKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPF 267 (353)
T ss_pred CCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCCC
Confidence 34445689999999999999999999999999999999999999988887 5999999999999999999999998898
Q ss_pred CccHHHHHHHHHhcCccEEEEcCCCCc--CCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhh
Q 022469 125 AITKDFMKKLFDEYNIDYIIHGDDPCV--LPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (296)
Q Consensus 125 ~~t~efl~~ll~~~~~d~VV~GdD~~f--g~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~ 188 (296)
.++.+|+ ++++||++|+|+|+.. .+++.|+|...+++|+++.+++++++|||+|++||+.
T Consensus 268 ~~~~~~i----~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~ 329 (353)
T PTZ00308 268 DVTKEVI----DSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVK 329 (353)
T ss_pred CChHHHH----HHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHH
Confidence 8777877 5689999999999975 5567899999999999999999999999999999973
No 11
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.96 E-value=4.5e-28 Score=202.77 Aligned_cols=132 Identities=42% Similarity=0.675 Sum_probs=117.6
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCccHHHH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFM 131 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~efl 131 (296)
++|+++|+||++|.||+.+|++|+++++.++|++++|+.+.+.|++++++.+||.+++++|+|||.++...|++ |+
T Consensus 2 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~----~~ 77 (136)
T cd02170 2 KRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWS----YF 77 (136)
T ss_pred eEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCC----Hh
Confidence 57999999999999999999999999999999999998776666679999999999999999999998876654 44
Q ss_pred HHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcC--CCCCCCHHHHHHHHhh
Q 022469 132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK--RTEGVSSTDIVGRMLL 188 (296)
Q Consensus 132 ~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~--rt~~VSST~Ir~rIl~ 188 (296)
+.+ .+++++++|+|+|++||.++.+.|+.+++.|.+.++. .+.+||||+||++|+.
T Consensus 78 ~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 78 KPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred HHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 433 4578999999999999999999999999999988888 7889999999999963
No 12
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.96 E-value=7e-28 Score=205.02 Aligned_cols=131 Identities=26% Similarity=0.360 Sum_probs=114.3
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCccHHHH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFM 131 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~efl 131 (296)
..|+++|+||++|.||+++|++|+++++.++|++++|+.+...+++|++|.+||.+++++|+|||.++. .|+..+++|+
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~-~~~~~~~~fi 83 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVL-FDNPTALEII 83 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEE-CCCCCHHHHH
Confidence 469999999999999999999999999999999999987765555799999999999999988999998 5765567887
Q ss_pred HHHHHhcCccEEEEcCCCCcCCCC-----CchHHHHHHCC-eEEEcCCCCCCCHHHHHHHHhh
Q 022469 132 KKLFDEYNIDYIIHGDDPCVLPDG-----TDAYELAKKAG-RYKQIKRTEGVSSTDIVGRMLL 188 (296)
Q Consensus 132 ~~ll~~~~~d~VV~GdD~~fg~~g-----~d~y~~lk~~g-~v~~v~rt~~VSST~Ir~rIl~ 188 (296)
+ +++++++|+|+||+||.++ .+.++.+++.| ++... +++++|||+|++||+.
T Consensus 84 ~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~ 141 (144)
T cd02172 84 D----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFD 141 (144)
T ss_pred H----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHh
Confidence 4 5899999999999999875 67788887765 55666 9999999999999964
No 13
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.95 E-value=1.5e-26 Score=196.71 Aligned_cols=129 Identities=36% Similarity=0.554 Sum_probs=108.4
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHhcCCccEEEEcCCCCccHH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITKD 129 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~e 129 (296)
..|+++|+||++|.||+++|++|+++++.++|++++|+.....|+ +|+++.+||.+++++|+|||+++...+. .+++
T Consensus 12 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~~~ 90 (144)
T TIGR02199 12 KIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TPEE 90 (144)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CHHH
Confidence 469999999999999999999999999999999999987654444 5899999999999999999999884332 2467
Q ss_pred HHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHH-CCeEEEcCCCCCCCHHHHHHHHh
Q 022469 130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKRTEGVSSTDIVGRML 187 (296)
Q Consensus 130 fl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~~v~rt~~VSST~Ir~rIl 187 (296)
|+ ++++++++|+|+||+|.. ...++.+++ .+++.++++++++|||+||+||+
T Consensus 91 fi----~~l~~~~vv~G~d~~~~~--~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 91 LI----GELKPDILVKGGDYKVET--LVGAELVESYGGQVVLLPFVEGRSTTAIIEKIL 143 (144)
T ss_pred HH----HHhCCCEEEECCCCCCCc--chhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence 76 468999999999999832 223555565 46999999999999999999996
No 14
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.94 E-value=3.4e-26 Score=189.55 Aligned_cols=123 Identities=29% Similarity=0.533 Sum_probs=102.4
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCccHHHHHH
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKK 133 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~efl~~ 133 (296)
|+++|+||++|.||+++|++|+++|++++|++++|+.....+++|+++.+||++++++|+|||+++...|+ ++|++.
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~---~~f~~~ 77 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSW---EQKKQD 77 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCc---cchHHH
Confidence 57899999999999999999999999999999999866544457899999999999999999999764443 345554
Q ss_pred HHHhcCccEEEEcCCCCcCCCCCchHHHHHHC--CeEEEcCCCCCCCHHHHHHHH
Q 022469 134 LFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA--GRYKQIKRTEGVSSTDIVGRM 186 (296)
Q Consensus 134 ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~--g~v~~v~rt~~VSST~Ir~rI 186 (296)
+ +++++|++++|+||. ++++.++.. +++.+++++++||||.||+.|
T Consensus 78 l-~~~~~~~vv~G~D~~------g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 78 I-IDFNIDVFVMGDDWE------GKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred H-HHcCCCEEEECCCcc------chHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 3 679999999999993 345566544 467789999999999999864
No 15
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.93 E-value=2.2e-25 Score=185.00 Aligned_cols=126 Identities=33% Similarity=0.554 Sum_probs=106.5
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHhcCCccEEEEcCCCCccHHH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF 130 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~ef 130 (296)
++|+++|+||++|.||+.+|++|+++++++++++++|+.. ..++ ++++|.+||++++++|+|||+++...++ .+|
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~-~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~---~~f 77 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN-AGKGKKAVIPYEQRAEILESIRYVDLVIPETNW---EQK 77 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH-HhcCCCCCCCHHHHHHHHHcCCccCEEecCCCc---cCh
Confidence 4699999999999999999999999999999999998743 3333 6899999999999999899999753332 346
Q ss_pred HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhh
Q 022469 131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (296)
Q Consensus 131 l~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~ 188 (296)
++.+ ++++++++++|+||. ++++.+++.+++..++++.+||||.||++|..
T Consensus 78 ~~~~-~~l~~~~vv~G~d~~------g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 78 IEDI-KKYNVDVFVMGDDWE------GKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHH-HHhCCCEEEECCCCc------chHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 5544 679999999999983 46788888899999999999999999999863
No 16
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.89 E-value=9.8e-23 Score=178.88 Aligned_cols=134 Identities=22% Similarity=0.300 Sum_probs=106.5
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhcCe---EEEEEeCChhh----hhcCC-CCCCCHHHHHHHHHhcCCccEEEEcCCCC
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALGDQ---LVVGVVSDAEI----IANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYA 125 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lgd~---LiVgV~sD~~i----~~~Kg-~pi~s~eER~~~l~~~k~VD~Vv~~~py~ 125 (296)
|+++|+|||+|.||+++|++|++++++ ..+.+++++.. ...+. .++++.++|.++++++ +||+++. .||+
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~vd~v~~-~~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL-GVDYLLV-LPFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-CCCEEEE-eCCC
Confidence 789999999999999999999999852 45555555432 12232 5899999999999999 5999998 6774
Q ss_pred ------ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHC-----CeEEEcCCC----CCCCHHHHHHHHhhc
Q 022469 126 ------ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA-----GRYKQIKRT----EGVSSTDIVGRMLLC 189 (296)
Q Consensus 126 ------~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~-----g~v~~v~rt----~~VSST~Ir~rIl~~ 189 (296)
..++|+++++.+.+++++|+|+||+||.++.++.+.+++. .++.++++. ..||||.||+.|.++
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G 158 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG 158 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence 2467888876666999999999999999999887766543 356777763 679999999999744
No 17
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.89 E-value=2.4e-22 Score=198.72 Aligned_cols=131 Identities=33% Similarity=0.495 Sum_probs=112.5
Q ss_pred CeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHhcCCccEEEEcCCCCccH
Q 022469 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITK 128 (296)
Q Consensus 51 ~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~ 128 (296)
..+|++.|+||++|.||+++|++|++++++++|||++|+.+...|+ +|+++.+||.+++++|+|||++++. +...+.
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~-~~~~~~ 418 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPF-EEDTPQ 418 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeC-CCCCHH
Confidence 4569999999999999999999999999999999999998876676 5899999999999999999999863 222345
Q ss_pred HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHh
Q 022469 129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRML 187 (296)
Q Consensus 129 efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl 187 (296)
+|+ ++++||++|+|+||.+.+. .+.+...+.+|+++++++++++|||+|++||.
T Consensus 419 ~~~----~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~ 472 (473)
T PRK11316 419 RLI----AEILPDLLVKGGDYKPEEI-AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR 472 (473)
T ss_pred HHH----HHhCCCEEEECCCCCCCcc-ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence 554 5678999999999987532 44566777889999999999999999999996
No 18
>PRK07143 hypothetical protein; Provisional
Probab=99.89 E-value=4.4e-22 Score=186.36 Aligned_cols=135 Identities=16% Similarity=0.267 Sum_probs=112.7
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhh-hcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC-----
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEII-ANKGPPVTPLHERMIMVNAVKWVDEVISDAPYA----- 125 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~-~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~----- 125 (296)
..|+++|+|||+|.||+++|++|++.++.++|...++|... ..+.+++++.+||.++++++ ++|.++. .||+
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~-~~F~~~~a~ 93 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIIL-LDFNEELQN 93 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEE-eCCCHHHhC
Confidence 35999999999999999999999999887776665565432 22224699999999999999 8999988 7875
Q ss_pred -ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCC-eEEEcCC----CCCCCHHHHHHHHhhc
Q 022469 126 -ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG-RYKQIKR----TEGVSSTDIVGRMLLC 189 (296)
Q Consensus 126 -~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g-~v~~v~r----t~~VSST~Ir~rIl~~ 189 (296)
.+++|++.++. ++++.||+|+||+||+++.++++.|++.+ .+.+++. ...||||.||+.|..+
T Consensus 94 ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G 162 (279)
T PRK07143 94 LSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG 162 (279)
T ss_pred CCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence 24789988764 99999999999999999999999999987 6777765 3579999999999854
No 19
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.88 E-value=3.2e-22 Score=189.47 Aligned_cols=135 Identities=25% Similarity=0.312 Sum_probs=110.2
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeE---EEEEeCChhh----hhcCC-CCCCCHHHHHHHHHhcCCccEEEEcCCC
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQL---VVGVVSDAEI----IANKG-PPVTPLHERMIMVNAVKWVDEVISDAPY 124 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~L---iVgV~sD~~i----~~~Kg-~pi~s~eER~~~l~~~k~VD~Vv~~~py 124 (296)
.|+++|+||++|.||+++|++|+++++++ .+.+++|+.. ...+. +++++.+||.++++++ +||.++. .||
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-gVD~~~~-~~F 92 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-GVDYVLV-LPF 92 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-CCCEEEE-ecC
Confidence 69999999999999999999999998643 3456666532 11222 5799999999999999 5999998 787
Q ss_pred C------ccHHHHHH-HHHhcCccEEEEcCCCCcCCCCCchHHHHHHC-----CeEEEcCC----CCCCCHHHHHHHHhh
Q 022469 125 A------ITKDFMKK-LFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA-----GRYKQIKR----TEGVSSTDIVGRMLL 188 (296)
Q Consensus 125 ~------~t~efl~~-ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~-----g~v~~v~r----t~~VSST~Ir~rIl~ 188 (296)
+ ..++|+++ ++++++++++|+|+||+||.++.++++.+++. .++.+++. .+.||||.||+.|..
T Consensus 93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~ 172 (305)
T PRK05627 93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE 172 (305)
T ss_pred CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence 5 24789988 45569999999999999999999999988874 45666666 368999999999985
Q ss_pred c
Q 022469 189 C 189 (296)
Q Consensus 189 ~ 189 (296)
+
T Consensus 173 G 173 (305)
T PRK05627 173 G 173 (305)
T ss_pred C
Confidence 4
No 20
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.87 E-value=2.5e-22 Score=187.49 Aligned_cols=144 Identities=36% Similarity=0.633 Sum_probs=125.4
Q ss_pred HHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHhcCCccE
Q 022469 40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDE 117 (296)
Q Consensus 40 ~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~~k~VD~ 117 (296)
++.+..++++....||++|.||+||.||+..|+.|++++|+|+||+++|+.++..|+ .|+|++.||...+.+||+||+
T Consensus 187 ~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVde 266 (358)
T KOG2803|consen 187 QFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVDE 266 (358)
T ss_pred EeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccce
Confidence 456666677777789999999999999999999999999999999999999888888 499999999999999999999
Q ss_pred EEEcCCCCccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhh
Q 022469 118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (296)
Q Consensus 118 Vv~~~py~~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~ 188 (296)
|++++||..+.+|+ +.++++.|++|.-+.+ .+..+.|+..+..+.+..+.....++|..|++||..
T Consensus 267 VvvGaP~~v~s~~i----~~~~~~~v~~g~~~~~-~~~~~py~~~k~~~i~~~~~~~~dltte~Iv~RIis 332 (358)
T KOG2803|consen 267 VVVGAPYEVTSEFI----KLFNIDKVAHGTIPDF-RDPSDPYADPKRRGIFEEADSGSDLTTELIVERIIS 332 (358)
T ss_pred EEEcCchhccHHHH----HhcCceEEEEeccccc-cCccCccccchhhcchhhcCCcccccHHHHHHHHHH
Confidence 99999999888887 4689999999982222 234568888888888887777666999999999984
No 21
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.84 E-value=9.1e-21 Score=163.75 Aligned_cols=130 Identities=26% Similarity=0.401 Sum_probs=92.6
Q ss_pred CCeEEEEeCcCCcCCHHHHHHHHHHHHhc---CeEEEEEeCC--hh-hhh-cCC-CCCCCHHHHHHHHHhcCCccEEEEc
Q 022469 50 KPVRVYMDGCFDMMHYGHCNALRQARALG---DQLVVGVVSD--AE-IIA-NKG-PPVTPLHERMIMVNAVKWVDEVISD 121 (296)
Q Consensus 50 ~~~rV~~~G~FD~vH~GH~~lL~qAk~lg---d~LiVgV~sD--~~-i~~-~Kg-~pi~s~eER~~~l~~~k~VD~Vv~~ 121 (296)
....++++|+|||+|.||+++|++|++.+ +...+.++++ |. +.. .+. ..++|.+||.++++.+ +||+++.
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~- 81 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV- 81 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE-
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE-
Confidence 34569999999999999999999999987 2234445554 32 222 222 4799999999999998 8999988
Q ss_pred CCCCc------cHHHHHHHHH-hcCccEEEEcCCCCcCCCCCchHHHHHHCC-----eEEEcCCC----CCCCHHH
Q 022469 122 APYAI------TKDFMKKLFD-EYNIDYIIHGDDPCVLPDGTDAYELAKKAG-----RYKQIKRT----EGVSSTD 181 (296)
Q Consensus 122 ~py~~------t~efl~~ll~-~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g-----~v~~v~rt----~~VSST~ 181 (296)
.||+- +++|++.++. ++++..||+|+||+||++++++.+.+++.+ .+.+++.. ..||||+
T Consensus 82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr 157 (157)
T PF06574_consen 82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR 157 (157)
T ss_dssp E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence 78752 4799998655 899999999999999999999999998875 46666663 5799985
No 22
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.83 E-value=9.1e-20 Score=171.54 Aligned_cols=134 Identities=17% Similarity=0.274 Sum_probs=104.6
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhcCe---EEEEEeCCh--h--hhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC-
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALGDQ---LVVGVVSDA--E--IIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYA- 125 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lgd~---LiVgV~sD~--~--i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~- 125 (296)
++++|+|||+|.||+++|++|++.+++ -.+.+++++ . +...+.+++++.+||.++++++ +||.++. .||+
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~-~~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLV-VVFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEE-eCCCH
Confidence 579999999999999999999987632 234444443 2 2212223499999999999998 8999998 8885
Q ss_pred ----c-cHHHHHHHH-HhcCccEEEEcCCCCcCCCCCchHHHHHHCCe-----EEEcCCC---CCCCHHHHHHHHhhc
Q 022469 126 ----I-TKDFMKKLF-DEYNIDYIIHGDDPCVLPDGTDAYELAKKAGR-----YKQIKRT---EGVSSTDIVGRMLLC 189 (296)
Q Consensus 126 ----~-t~efl~~ll-~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~-----v~~v~rt---~~VSST~Ir~rIl~~ 189 (296)
+ +++|+++++ ++++++.||+|+||+||.+++++++.|++.++ +.+++.. +.||||.||+.|..+
T Consensus 79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G 156 (288)
T TIGR00083 79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG 156 (288)
T ss_pred HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence 2 468998865 55999999999999999999999999988653 3344442 579999999999854
No 23
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=2.5e-19 Score=172.68 Aligned_cols=130 Identities=34% Similarity=0.510 Sum_probs=111.8
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHhcCCccEEEEcCCCCccHHH
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF 130 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~ef 130 (296)
.|++-||||.+|.||..+|.|||++||.|+||+++|.++.+.|| +|+.+++.|..++.++..||.|+. |++|.
T Consensus 334 vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~-----F~edT 408 (467)
T COG2870 334 VVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVI-----FDEDT 408 (467)
T ss_pred EEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEE-----ecCCC
Confidence 69999999999999999999999999999999999999998999 799999999999999999999988 44555
Q ss_pred HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhh
Q 022469 131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (296)
Q Consensus 131 l~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~ 188 (296)
-.+|++...||.+|.|-||.-..- .+.-....+.|++..++-.++.|||.|+++|..
T Consensus 409 P~~LI~~~~PdilVKGgDy~~~~i-~g~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~ 465 (467)
T COG2870 409 PEELIEAVKPDILVKGGDYKIEKI-VGADIVEAYGGEVLLIPFEEGKSTTKIIEKIRA 465 (467)
T ss_pred HHHHHHHhCcceEEccCCCChhhc-cchhhhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence 555667789999999999974211 122233456789999999999999999999864
No 24
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.80 E-value=5.1e-19 Score=167.26 Aligned_cols=137 Identities=24% Similarity=0.317 Sum_probs=109.3
Q ss_pred CeEEEEeCcCCcCCHHHHHHHHHHHHhcCe--E-EEEEeCChh---h-hhcCC-CCCCCHHHHHHHHHhcCCccEEEEcC
Q 022469 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQ--L-VVGVVSDAE---I-IANKG-PPVTPLHERMIMVNAVKWVDEVISDA 122 (296)
Q Consensus 51 ~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~--L-iVgV~sD~~---i-~~~Kg-~pi~s~eER~~~l~~~k~VD~Vv~~~ 122 (296)
...|+++|+|||+|+||+++|++|++.+.+ + .++++++|. . ...+. ..+++.++|.+.++.+ +||.++. .
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v-~ 92 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVV-L 92 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEE-E
Confidence 356999999999999999999999987632 2 445555542 1 11121 2599999999999999 7999988 7
Q ss_pred CCC--c----cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCC----eEEEcCCC----CCCCHHHHHHHHhh
Q 022469 123 PYA--I----TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKRT----EGVSSTDIVGRMLL 188 (296)
Q Consensus 123 py~--~----t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~~v~rt----~~VSST~Ir~rIl~ 188 (296)
+|+ + .++|++.+++.++++++|+|+||+||.++.++.++++..| .+.+++.. .+||||.||+.+..
T Consensus 93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~ 172 (304)
T COG0196 93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE 172 (304)
T ss_pred eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence 776 2 4789988888999999999999999999999989988876 36666663 35999999999875
Q ss_pred c
Q 022469 189 C 189 (296)
Q Consensus 189 ~ 189 (296)
.
T Consensus 173 g 173 (304)
T COG0196 173 G 173 (304)
T ss_pred C
Confidence 3
No 25
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.78 E-value=2.5e-18 Score=142.11 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=97.1
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhc-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCC-ccEEEEcCCCC-----c
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKW-VDEVISDAPYA-----I 126 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lg-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~-VD~Vv~~~py~-----~ 126 (296)
+++.|+|||+|.||+.++++|++.+ +.++|.+.+++.... +..++++.++|+++++++.. ++.++. .++. .
T Consensus 2 ~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~-~~~~~~~~~~ 79 (143)
T cd02039 2 GIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVP-VDFPEVKILL 79 (143)
T ss_pred eEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEE-EecChhhccC
Confidence 7899999999999999999999999 999998888764322 13478999999999999853 677755 3322 1
Q ss_pred cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHH---CCeEEEcCCC---CCCCHHHHHHH
Q 022469 127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK---AGRYKQIKRT---EGVSSTDIVGR 185 (296)
Q Consensus 127 t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~---~g~v~~v~rt---~~VSST~Ir~r 185 (296)
+.+|+..++..++++++++|.|+.++.+..+. ..++. ...+.++++. ..||||.||++
T Consensus 80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~-~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 80 AVVFILKILLKVGPDKVVVGEDFAFGKNASYN-KDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred HHHHHHHHHHHcCCcEEEECCccccCCchhhh-HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 23466666677899999999999998765432 22222 2456667775 57999999974
No 26
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.73 E-value=3.8e-18 Score=146.90 Aligned_cols=132 Identities=26% Similarity=0.336 Sum_probs=92.5
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCc---cH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI---TK 128 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~---t~ 128 (296)
.+|++.|+||++|.||..+|++|++++++|+|||++|+.+.++|+.|+++.++|++|++. +++.+.....+.+ +.
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEeccc
Confidence 479999999999999999999999999999999999987766666789999999999996 3444433222221 11
Q ss_pred HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCC----eEEEcCC-----CCCCCHHHHHHHHhhc
Q 022469 129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKR-----TEGVSSTDIVGRMLLC 189 (296)
Q Consensus 129 efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~~v~r-----t~~VSST~Ir~rIl~~ 189 (296)
.|.... ..++|++|+|+|-..+. .-.-+..++.| ++.+++. ++.+|||.||+++...
T Consensus 80 ~~gp~~--~~~~d~ivvs~et~~~~--~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~ 145 (153)
T PRK00777 80 PYGPAL--EDDFDAIVVSPETYPGA--LKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDE 145 (153)
T ss_pred cCCCcc--ccCCCEEEEChhhhhhH--HHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcc
Confidence 121111 13699999999954431 11112333433 4455555 5779999999998743
No 27
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.64 E-value=3.7e-15 Score=131.80 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=94.3
Q ss_pred cCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccEEEEc-------CC-----CC
Q 022469 59 CFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISD-------AP-----YA 125 (296)
Q Consensus 59 ~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~~-------~p-----y~ 125 (296)
+|||+|.||..++++|.+.++.+.|.+.+. + .+.++.++|++|++. +++.+.+... .| |-
T Consensus 7 ~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~~~ 79 (182)
T smart00764 7 NANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPSYF 79 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChhhh
Confidence 799999999999999999999887777654 1 356799999999987 3443322110 11 10
Q ss_pred -------------c-cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHC----CeEEEcCC----CCCCCHHHHH
Q 022469 126 -------------I-TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA----GRYKQIKR----TEGVSSTDIV 183 (296)
Q Consensus 126 -------------~-t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~----g~v~~v~r----t~~VSST~Ir 183 (296)
+ +++|++.|.+++++..||+|+||+||.++.++++.++.. .++..+++ .+.+|||.||
T Consensus 80 ~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST~IR 159 (182)
T smart00764 80 LKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISASTVR 159 (182)
T ss_pred cCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHHHHH
Confidence 0 257886566779999999999999999999999888774 34667777 3569999999
Q ss_pred HHHhhc
Q 022469 184 GRMLLC 189 (296)
Q Consensus 184 ~rIl~~ 189 (296)
+.|..+
T Consensus 160 ~~L~~G 165 (182)
T smart00764 160 KLLKEG 165 (182)
T ss_pred HHHHcC
Confidence 999643
No 28
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.63 E-value=3.1e-15 Score=130.45 Aligned_cols=125 Identities=25% Similarity=0.314 Sum_probs=85.4
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHH-hcCCcc-EEEEcCCCC-c--c
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVN-AVKWVD-EVISDAPYA-I--T 127 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~-~~k~VD-~Vv~~~py~-~--t 127 (296)
|+++.|.||++|.||++++++|.+.+|+|+++|.++.. ..|..+.++.+||++|++ +++.++ ..+...|.. . .
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~~~ 78 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIERN 78 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCccHH
Confidence 57899999999999999999999999999999887653 234445567799999995 466663 312213321 1 1
Q ss_pred HHHHHHHHHh--cCccEEEEcCCCCcCCCCCchHHHHHHCC-eEEEcC---CCCCCCHHHHHHHHhhc
Q 022469 128 KDFMKKLFDE--YNIDYIIHGDDPCVLPDGTDAYELAKKAG-RYKQIK---RTEGVSSTDIVGRMLLC 189 (296)
Q Consensus 128 ~efl~~ll~~--~~~d~VV~GdD~~fg~~g~d~y~~lk~~g-~v~~v~---rt~~VSST~Ir~rIl~~ 189 (296)
..+... ++. .++|+|+.|+... ..++++.| ++...| |+ ++|+|.||++|+..
T Consensus 79 ~~w~~~-v~~~~p~~D~vf~~~~~~--------~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~ 136 (165)
T TIGR01527 79 SIWVSY-VESMTPPFDVVYSNNPLV--------RRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG 136 (165)
T ss_pred HHHHHH-HHHhCCCCCEEEECCHHH--------HHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence 122111 111 2789999994322 34556655 556666 55 89999999999864
No 29
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.63 E-value=1.1e-14 Score=137.69 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=97.2
Q ss_pred CeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccEEEE---------
Q 022469 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS--------- 120 (296)
Q Consensus 51 ~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~--------- 120 (296)
...+.+.|+|||+|.||..++++|.+.++.++|.+.+. + .+.++.++|++|++. ++..+.+.+
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~ 186 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS 186 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence 45689999999999999999999999999887777543 2 467899999999987 333222211
Q ss_pred cCCCC----------------c-cHHHHHHHH-HhcCccEEEEcCCCCcCCCCCchHHHHHHC----CeEEEcCC----C
Q 022469 121 DAPYA----------------I-TKDFMKKLF-DEYNIDYIIHGDDPCVLPDGTDAYELAKKA----GRYKQIKR----T 174 (296)
Q Consensus 121 ~~py~----------------~-t~efl~~ll-~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~----g~v~~v~r----t 174 (296)
...|- + +++|++ ++ +++++..||+|+||+||.++.++..+++.. ..+.++++ .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v~~v~~~~~~g 265 (297)
T cd02169 187 SATFPSYFIKEQDVVIKAQTALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEVIEIERKKYDG 265 (297)
T ss_pred cccChhhhcCChhHHHHHHhcCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEEEEecccccCC
Confidence 11110 0 258887 55 569999999999999999999885555552 23556665 2
Q ss_pred CCCCHHHHHHHHhhc
Q 022469 175 EGVSSTDIVGRMLLC 189 (296)
Q Consensus 175 ~~VSST~Ir~rIl~~ 189 (296)
+.||||.||+.|..+
T Consensus 266 ~~ISST~IR~~l~~G 280 (297)
T cd02169 266 QPISASTVRQLLKEG 280 (297)
T ss_pred cEEcHHHHHHHHHcC
Confidence 579999999999754
No 30
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.61 E-value=1.7e-14 Score=124.55 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=87.9
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccEEEEcCCCC-ccHH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKD 129 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~~~py~-~t~e 129 (296)
.++++.|+|||+|.||+.++++|++.+|+|++++..++ .| .++++.++|++|++. +++++.+.+ .++. .+.+
T Consensus 2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~t~~ 75 (159)
T PRK00168 2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEV-VSFDGLLVD 75 (159)
T ss_pred cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEE-ecCCccHHH
Confidence 36899999999999999999999999999999987764 34 478999999999998 888888866 3433 3445
Q ss_pred HHHHHHHhcCccEEEEcCCCCcCCCCCchHHHH---HHC----CeEEEcCCC--CCCCHHHHHHHHhhc
Q 022469 130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA---KKA----GRYKQIKRT--EGVSSTDIVGRMLLC 189 (296)
Q Consensus 130 fl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~l---k~~----g~v~~v~rt--~~VSST~Ir~rIl~~ 189 (296)
++ +.+++++++.|-|-.. +++.-.... +.. ..+...... ..||||.||+++...
T Consensus 76 ~~----~~~~~~~~~~gl~~w~--d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g 138 (159)
T PRK00168 76 FA----REVGATVIVRGLRAVS--DFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG 138 (159)
T ss_pred HH----HHcCCCEEEecCcchh--hHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence 54 5678999999955322 111100011 111 122222222 369999999999743
No 31
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.56 E-value=4.1e-14 Score=121.50 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=86.0
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccEEEEcCCCC-ccHHHH
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKDFM 131 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~~~py~-~t~efl 131 (296)
+++.|+|||+|.||..++++|.+.+|+++++++.++ .| .++++.++|++|++. +++++.+.+ .++. ++.+++
T Consensus 2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v-~~~es~t~~~l 75 (153)
T cd02163 2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEV-DGFDGLLVDFA 75 (153)
T ss_pred EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEe-cCCcchHHHHH
Confidence 689999999999999999999999999999988765 34 478999999999997 677777765 4433 344554
Q ss_pred HHHHHhcCccEEEEcCCCCcCCCCCchHHHHH--HC-----CeEEEcCCC--CCCCHHHHHHHHhhc
Q 022469 132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK--KA-----GRYKQIKRT--EGVSSTDIVGRMLLC 189 (296)
Q Consensus 132 ~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk--~~-----g~v~~v~rt--~~VSST~Ir~rIl~~ 189 (296)
+.++.+++++|-|-.... +.-..+.. +. ..+..+... ..||||.||+++...
T Consensus 76 ----~~l~~~~~i~G~d~~~~~--e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g 136 (153)
T cd02163 76 ----RKHGANVIVRGLRAVSDF--EYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG 136 (153)
T ss_pred ----HHcCCCEEEECCcchhhH--HHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence 567899999996532211 11011111 11 112222222 359999999999844
No 32
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.54 E-value=3.2e-14 Score=135.62 Aligned_cols=127 Identities=24% Similarity=0.317 Sum_probs=91.8
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc--CCccEEEE---cCCCCcc
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV--KWVDEVIS---DAPYAIT 127 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~--k~VD~Vv~---~~py~~t 127 (296)
+|++.|+||.+|.||..+|++|+++++.|+|||++|+.+.++|..| .++++|.++++++ +.++.+.. ..||..+
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt 80 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT 80 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence 6999999999999999999999999999999999999887666567 9999999999994 55554432 2344322
Q ss_pred HHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCC----eEEEcCC-----CCCCCHHHHHHHHhhc
Q 022469 128 KDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKR-----TEGVSSTDIVGRMLLC 189 (296)
Q Consensus 128 ~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~~v~r-----t~~VSST~Ir~rIl~~ 189 (296)
. ...++|++|++.+-..+...- -+..++.| ++..++. ...+|||+||+.....
T Consensus 81 ~-------~~~~~d~IVVS~ET~~~~~~I--N~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~ 142 (322)
T PRK01170 81 L-------YEEDYEIIVVSPETYQRALKI--NEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDG 142 (322)
T ss_pred c-------ccCCCCEEEEeccccccHHHH--HHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccc
Confidence 1 135799999999976643221 12233343 3344433 2458999999876643
No 33
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.54 E-value=1.2e-14 Score=120.69 Aligned_cols=130 Identities=28% Similarity=0.298 Sum_probs=76.4
Q ss_pred EEeCcCCcCCHHHHHHHHHHHHhcCe-EEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccE----------------
Q 022469 55 YMDGCFDMMHYGHCNALRQARALGDQ-LVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE---------------- 117 (296)
Q Consensus 55 ~~~G~FD~vH~GH~~lL~qAk~lgd~-LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~---------------- 117 (296)
++.|+|||+|.||..++++|++.++. +++++.++....+. ++++++.+||++|++.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~-~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~~~ 79 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKD-KKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKKKY 79 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHST-TSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHHHS
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccccc-ccccCcHHHHHHHHHHHHhhcCCccccchhHHhHhhhc
Confidence 57899999999999999999999986 57777776544321 2479999999999998766555
Q ss_pred ------EEEcCCCC--c-cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCC-eEEEcCCCCCCCHHHHHHH
Q 022469 118 ------VISDAPYA--I-TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG-RYKQIKRTEGVSSTDIVGR 185 (296)
Q Consensus 118 ------Vv~~~py~--~-t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g-~v~~v~rt~~VSST~Ir~r 185 (296)
++.+.... + ......++++.+++.++..+.+..........+......+ .+........||||+||+|
T Consensus 80 ~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~ 157 (157)
T PF01467_consen 80 PDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRER 157 (157)
T ss_dssp TSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred cccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhcC
Confidence 44444300 0 0011223344566777777755432111111222222221 2334444567999999987
No 34
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.53 E-value=2.7e-14 Score=125.78 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=92.9
Q ss_pred hcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcC-eEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHhc-CC------cc
Q 022469 46 RKKKKPVRVYMDGCFDMMHYGHCNALRQARALGD-QLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAV-KW------VD 116 (296)
Q Consensus 46 ~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd-~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~~-k~------VD 116 (296)
++......|+++|+||++|.||+.+|++|.+++. .++||+++++.....+. ..+++.++|.+.+++. .- ++
T Consensus 14 ~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~ 93 (177)
T PLN02388 14 SPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQ 93 (177)
T ss_pred CCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEE
Confidence 3444455799999999999999999999999984 79999999986533222 4799999999998873 11 11
Q ss_pred EEEEcCCCCccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCC----eEEEc---CC---CCCCCHHHHHHHH
Q 022469 117 EVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQI---KR---TEGVSSTDIVGRM 186 (296)
Q Consensus 117 ~Vv~~~py~~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~~v---~r---t~~VSST~Ir~rI 186 (296)
.+-+..||..+.. ..++|++|++..-..|...-+.+. ++.| .+.++ .. ...||||+||+|+
T Consensus 94 i~~i~D~~Gpt~~-------~~~~d~LVVS~ET~~g~~~IN~~R--~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~ 164 (177)
T PLN02388 94 AEPIIDPYGPSIV-------DENLEAIVVSKETLPGGLSVNKKR--AERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLE 164 (177)
T ss_pred EEEecCCCCCccc-------CCCCCEEEEcHhHhhhHHHHHHHH--HHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHH
Confidence 2222355553311 246899999998776644333332 2233 22222 21 3589999999999
Q ss_pred hhchh
Q 022469 187 LLCVR 191 (296)
Q Consensus 187 l~~~~ 191 (296)
....+
T Consensus 165 ~~~~~ 169 (177)
T PLN02388 165 AEKAV 169 (177)
T ss_pred HHHHH
Confidence 87655
No 35
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.52 E-value=1.9e-13 Score=118.61 Aligned_cols=126 Identities=21% Similarity=0.203 Sum_probs=84.5
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHH-hcCCcc----EE--EEcCCCC
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVN-AVKWVD----EV--ISDAPYA 125 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~-~~k~VD----~V--v~~~py~ 125 (296)
++++.|.|||+|.||+.++++|.+.+|+|+++|.++... .+....++.+||++|++ +++.+| .+ +....+.
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~ 78 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIE 78 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCC
Confidence 478999999999999999999999999999988765422 23335578899999999 456654 33 2211112
Q ss_pred ccHHHHHHHHHh-cCccEEEEcCCCCcCCCCCchHHHHHHC-CeEEEcCCC--CCCCHHHHHHHHhh
Q 022469 126 ITKDFMKKLFDE-YNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIKRT--EGVSSTDIVGRMLL 188 (296)
Q Consensus 126 ~t~efl~~ll~~-~~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~~v~rt--~~VSST~Ir~rIl~ 188 (296)
....|...+... .++|+++.|+++.. ..++.. ..+..++++ +++|+|.||++|..
T Consensus 79 ~~~~w~~~v~~~vp~~div~~g~~~~~--------~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~ 137 (163)
T cd02166 79 RNSLWVSYVESLTPPFDVVYSGNPLVA--------RLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG 137 (163)
T ss_pred chHHHHHHHHHHCCCCCEEEECchHHH--------HhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence 233444332222 25788999865321 122333 345567764 47999999999873
No 36
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.52 E-value=1.6e-14 Score=134.78 Aligned_cols=52 Identities=37% Similarity=0.574 Sum_probs=47.6
Q ss_pred CCCCCeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCchhhhhcCCCC
Q 022469 245 PGPDARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTVRLKNPSC 296 (296)
Q Consensus 245 ~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~livgv~~d~~~~~~k~~~ 296 (296)
|.....+||++|+|||||+||+++|++||++| ++|||||++|++++++||+|
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrP 76 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKT 76 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCC
Confidence 34557899999999999999999999999996 79999999999999999975
No 37
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.51 E-value=4.6e-14 Score=103.41 Aligned_cols=64 Identities=47% Similarity=0.692 Sum_probs=56.5
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCcc
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVD 116 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD 116 (296)
++++.|+||++|.||+.++++|+++++.+++++.+|+.....|..++++.++|.++++.+++++
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 64 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD 64 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence 3789999999999999999999999998899998887665555458999999999999987765
No 38
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.47 E-value=9.4e-13 Score=113.19 Aligned_cols=120 Identities=21% Similarity=0.317 Sum_probs=79.6
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC-CccEEEEcCCCC-ccHHHH
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK-WVDEVISDAPYA-ITKDFM 131 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k-~VD~Vv~~~py~-~t~efl 131 (296)
+++.|+|||+|.||+.++++|++.+|++++++..++ .| .+..+.++|++|++.+- +.+.+.. .++. .+.+++
T Consensus 2 ~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~p----~k-~~~~~~~~R~~m~~~a~~~~~~~~v-~~~e~yt~dt~ 75 (155)
T TIGR01510 2 ALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SK-KPLFSLEERVELIKDATKHLPNVRV-DVFDGLLVDYA 75 (155)
T ss_pred EEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCcCHHHHHHHHHHHHhhCCCeEE-cCccchHHHHH
Confidence 789999999999999999999999999999887543 34 36789999999999852 2222222 2332 334444
Q ss_pred HHHHHhcCccEEEEcCCCCcCCCCCchHH-HHHH--C--------CeEEEcC--CCCCCCHHHHHHHHhhc
Q 022469 132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYE-LAKK--A--------GRYKQIK--RTEGVSSTDIVGRMLLC 189 (296)
Q Consensus 132 ~~ll~~~~~d~VV~GdD~~fg~~g~d~y~-~lk~--~--------g~v~~v~--rt~~VSST~Ir~rIl~~ 189 (296)
+.++.++++.|-|-.. .++ +++. . ..+..+. +...||||.||+++...
T Consensus 76 ----~~l~~~~~i~G~~~~~------~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g 136 (155)
T TIGR01510 76 ----KELGATFIVRGLRAAT------DFEYELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG 136 (155)
T ss_pred ----HHcCCCEEEecCcchh------hHHHHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence 5678899999854221 111 1111 0 1121212 12379999999999854
No 39
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.42 E-value=3.2e-13 Score=115.19 Aligned_cols=122 Identities=26% Similarity=0.339 Sum_probs=81.4
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhc-CeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHhc-CCc----c--EEEEcC
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAV-KWV----D--EVISDA 122 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lg-d~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~~-k~V----D--~Vv~~~ 122 (296)
+|++.|+||++|.||+.+|++|.+++ +++++|+++|+... .|. .++++.++|+++++.+ ... . .+-+..
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d 79 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD 79 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence 48899999999999999999999998 78999999987432 343 3689999999999874 211 1 112234
Q ss_pred CCCccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHH-HCC----eEEEcC------CCCCCCHHHHHHH
Q 022469 123 PYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK-KAG----RYKQIK------RTEGVSSTDIVGR 185 (296)
Q Consensus 123 py~~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk-~~g----~v~~v~------rt~~VSST~Ir~r 185 (296)
||..+.. .-.+|++|+...-..|... .+..+ +.| .+.+++ -...||||+||++
T Consensus 80 ~~Gpt~~-------~~~~d~lVVS~ET~~~~~~---iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~~ 143 (143)
T cd02164 80 PYGPTGT-------DPDLEAIVVSPETYPGALK---INRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRRG 143 (143)
T ss_pred CCCCccc-------CCCCCEEEEcHHHhhhHHH---HHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhCc
Confidence 5543311 1358999999876554322 22222 333 233322 2357999999863
No 40
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.39 E-value=8.9e-12 Score=110.14 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=89.8
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc-CCccEEEEc------CCC
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVDEVISD------APY 124 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~-k~VD~Vv~~------~py 124 (296)
+++.|+|||+|.||..+++.|++.+ |++++.+..++. .|+....+.++|++|++.+ ...+.+... ..+
T Consensus 2 ~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~ 78 (192)
T cd02165 2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGP 78 (192)
T ss_pred eEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCC
Confidence 6899999999999999999999998 888887765542 3445778999999999874 333334331 112
Q ss_pred CccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHHCCeEEEcCCC--------------------------C
Q 022469 125 AITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT--------------------------E 175 (296)
Q Consensus 125 ~~t~efl~~ll~~~~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~~v~rt--------------------------~ 175 (296)
..|.+.++.+.+.++ .+ ++++|.|- ...+.|.+.-+++ ....+.+++|. .
T Consensus 79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~-~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (192)
T cd02165 79 SYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELL-SLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPLL 157 (192)
T ss_pred CCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHH-HhCcEEEEeCCCCCcccchhhhhccCCCcEEEecCCcc
Confidence 345667776665553 34 78888884 3345666543333 34445554441 2
Q ss_pred CCCHHHHHHHHhhc
Q 022469 176 GVSSTDIVGRMLLC 189 (296)
Q Consensus 176 ~VSST~Ir~rIl~~ 189 (296)
.||||+||+++...
T Consensus 158 ~iSST~IR~~~~~g 171 (192)
T cd02165 158 NISSTEIRERLKNG 171 (192)
T ss_pred ccCHHHHHHHHHcC
Confidence 59999999998744
No 41
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.38 E-value=1.7e-11 Score=109.41 Aligned_cols=134 Identities=23% Similarity=0.270 Sum_probs=89.0
Q ss_pred CeEEEEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHh-cCCccEEEEc-----
Q 022469 51 PVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD----- 121 (296)
Q Consensus 51 ~~rV~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~-~k~VD~Vv~~----- 121 (296)
++++++.|+|||+|.||+.++++|++.. +.+++.++..+. .|. +.+++.++|++|++. +...+.+.+.
T Consensus 4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 80 (203)
T PRK00071 4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIELE 80 (203)
T ss_pred cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHh
Confidence 3468999999999999999999999876 677777766542 343 368899999999986 4555544431
Q ss_pred -CCCCccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHHCCeEEEcCCC-----------------------
Q 022469 122 -APYAITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT----------------------- 174 (296)
Q Consensus 122 -~py~~t~efl~~ll~~~~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~~v~rt----------------------- 174 (296)
.....|.+.++.+.+.++ .+ ++++|.|- .....|.+.-+++ ....+.+++|.
T Consensus 81 ~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~-~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i~ 159 (203)
T PRK00071 81 RPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKRWEEIL-DLVHFVVVPRPGYPLEALALPALQQLLEAAGAIT 159 (203)
T ss_pred CCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhhhcccccCHHHHH-HhCcEEEEeCCCCCccccchhHHHHhhccCCCEE
Confidence 122345667766655552 22 78889884 2334566433333 33444444441
Q ss_pred ------CCCCHHHHHHHHhh
Q 022469 175 ------EGVSSTDIVGRMLL 188 (296)
Q Consensus 175 ------~~VSST~Ir~rIl~ 188 (296)
..||||+||+++..
T Consensus 160 ~~~~~~~~ISST~IR~~l~~ 179 (203)
T PRK00071 160 LLDVPLLAISSTAIRERIKE 179 (203)
T ss_pred EEeCCCCccCHHHHHHHHHc
Confidence 24899999999874
No 42
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.37 E-value=1.3e-11 Score=110.58 Aligned_cols=136 Identities=24% Similarity=0.257 Sum_probs=97.2
Q ss_pred CCeEEEEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHh-cCCccEEEE-----
Q 022469 50 KPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVIS----- 120 (296)
Q Consensus 50 ~~~rV~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~-~k~VD~Vv~----- 120 (296)
.+..+++.|+|||+|.||+.+.++|.+.. |+|++.++..+ .+|. +...+.++|++|++- ++..+....
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 35579999999999999999999999875 56666555544 2454 578999999999985 554444211
Q ss_pred -cCCCCccHHHHHHHHHhcCcc---EEEEcCCC-CcCCCCCchHHHHHHCCeEEEcCCC-C-------------------
Q 022469 121 -DAPYAITKDFMKKLFDEYNID---YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT-E------------------- 175 (296)
Q Consensus 121 -~~py~~t~efl~~ll~~~~~d---~VV~GdD~-~fg~~g~d~y~~lk~~g~v~~v~rt-~------------------- 175 (296)
....+.|.+.++.+.+++++| |.++|.|- ...+.|.+ ++.+-..+.+.+++|. .
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~-~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~ 157 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYD-WDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDL 157 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhh-HHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccC
Confidence 123345678888776678888 58888884 44556764 5566666677776663 1
Q ss_pred ---CCCHHHHHHHHhhc
Q 022469 176 ---GVSSTDIVGRMLLC 189 (296)
Q Consensus 176 ---~VSST~Ir~rIl~~ 189 (296)
.||||.||+++...
T Consensus 158 ~~~~ISSt~IR~~~~~~ 174 (197)
T COG1057 158 PRLDISSTEIRERIRRG 174 (197)
T ss_pred ccccCchHHHHHHHhCC
Confidence 49999999998754
No 43
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.35 E-value=7.4e-13 Score=112.26 Aligned_cols=46 Identities=43% Similarity=0.715 Sum_probs=41.4
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhh-cCCCC
Q 022469 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL-KNPSC 296 (296)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~-~k~~~ 296 (296)
.|+++|+||+||+||+++|++||++||+|||.+.+|+++.+ +||+|
T Consensus 3 rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~p 49 (140)
T COG0615 3 RVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKP 49 (140)
T ss_pred EEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCC
Confidence 49999999999999999999999999999999999988887 56654
No 44
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.34 E-value=1.8e-11 Score=104.15 Aligned_cols=123 Identities=23% Similarity=0.241 Sum_probs=82.2
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccEEEEcCCC-CccHH
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPY-AITKD 129 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~~~py-~~t~e 129 (296)
+++++.|+|||+|.||+.++++|.+++|+++|++..++ .| +++++.+||+++++. ++..+.+-....+ .+..+
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v~ 76 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKLTAE 76 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHHH
Confidence 36899999999999999999999999999999998774 45 378999999999976 4444444331111 23445
Q ss_pred HHHHHHHhcCccEEEEcCCCCcCCCCCchHHHH-----HHC-CeE---EEcCC--CCCCCHHHHHHHHh
Q 022469 130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA-----KKA-GRY---KQIKR--TEGVSSTDIVGRML 187 (296)
Q Consensus 130 fl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~l-----k~~-g~v---~~v~r--t~~VSST~Ir~rIl 187 (296)
|. ++.+++++|.|-.-..+- .|+.. +.. ..+ ..... ..-||||.||+...
T Consensus 77 ~~----~~~~a~~ivrGlR~~~Df----eyE~~~a~~n~~l~~~ietvfl~~~~~~~~iSSs~vre~~~ 137 (140)
T PRK13964 77 IA----KKLGANFLIRSARNNIDF----QYEIVLAAGNKSLNNDLETILIIPDYDKIEYSSTLLRHKKF 137 (140)
T ss_pred HH----HHCCCeEEEEecCCCccH----HHHHHHHHHHHhhcCCCeEEEeecCCCCCEEeHHHHHHHHH
Confidence 54 568999999996532111 12221 111 112 11222 35699999998653
No 45
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.33 E-value=5e-12 Score=111.73 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=82.3
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc-CC--cc--EEEEcCCC---C
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KW--VD--EVISDAPY---A 125 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~-k~--VD--~Vv~~~py---~ 125 (296)
++++|.|||+|.||+.++++|.+.+++|+|++.+..... .+ ++.++.+||++|++.+ .. +| .+.. .|. .
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~~-~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i-~pi~D~~ 78 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTAR-NI-KNPWTSEEREVMIEAALSDAGADLARVHF-RPLRDHL 78 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCCC-CC-CCCcCHHHHHHHHHHHHhccCCCcceEEE-EecCCCC
Confidence 689999999999999999999999999999997764321 22 3568999999999984 22 22 3322 221 1
Q ss_pred -ccHHHHHHH---HH---hcCccEEEEcCCCCcCCCCCchHH-HHHHCCeEEEcCCCCCCCHHHHHHHHhhc
Q 022469 126 -ITKDFMKKL---FD---EYNIDYIIHGDDPCVLPDGTDAYE-LAKKAGRYKQIKRTEGVSSTDIVGRMLLC 189 (296)
Q Consensus 126 -~t~efl~~l---l~---~~~~d~VV~GdD~~fg~~g~d~y~-~lk~~g~v~~v~rt~~VSST~Ir~rIl~~ 189 (296)
.+.-+...+ +. ..+++++++|.|... ..-|. +..+. .+..++..+.+|||+||++|...
T Consensus 79 ~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~----~~~~~~lfpe~-~~~~~p~~~~iSsT~IR~~i~~~ 145 (181)
T cd02168 79 YSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDA----SSYYLRSFPQW-DYLEVPNYPDLNATDIRRAYFEG 145 (181)
T ss_pred CChHHHHHHHHHhChHhhCCCCcEEEeCCccCC----CccceeecCCc-CeecCccccccCHHHHHHHHHhc
Confidence 122233222 11 135688889977531 11111 11111 24456666789999999999863
No 46
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.32 E-value=2.6e-11 Score=106.54 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=82.1
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc-C--Cc--cEEEEcCCC---
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-K--WV--DEVISDAPY--- 124 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~-k--~V--D~Vv~~~py--- 124 (296)
+++++|.||++|.||+.++++|.+.+|+|++++.+.... .+..+.++.+||++|++.. . .+ +.+.. .|.
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~~--~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~-~pi~D~ 78 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQES--HTLKNPFTAGERILMIRKALEEEGIDLSRYYI-IPIPDI 78 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHhcCCCCcceeeE-ecCCCc
Confidence 689999999999999999999999999999988653211 2223457899999999863 2 22 23322 231
Q ss_pred CccHHHHHHHHHh-cCccEEEEcCCCCcCCCCCchHHHHHHCC-eEEEcC--CCCCCCHHHHHHHHhhc
Q 022469 125 AITKDFMKKLFDE-YNIDYIIHGDDPCVLPDGTDAYELAKKAG-RYKQIK--RTEGVSSTDIVGRMLLC 189 (296)
Q Consensus 125 ~~t~efl~~ll~~-~~~d~VV~GdD~~fg~~g~d~y~~lk~~g-~v~~v~--rt~~VSST~Ir~rIl~~ 189 (296)
..+..|...+... ..+|.++.|+.+. ..+.+..| .+...+ +...+|+|+||++|...
T Consensus 79 ~~~~~w~~~v~~~~~~~d~v~~~~~y~--------~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g 139 (174)
T PRK01153 79 EFNSIWVSHVESYTPPFDVVYTGNPLV--------ARLFREAGYEVRQPPMFNREEYSGTEIRRRMIEG 139 (174)
T ss_pred chHHHHHHHHHHhCCCCCEEEECChHH--------HHhchhhCCeEecCCccccCCCCHHHHHHHHHcC
Confidence 1233444433221 3678898886322 12223333 345555 44689999999999753
No 47
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.30 E-value=4.2e-11 Score=106.22 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=85.1
Q ss_pred EEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHh-cCCccEEEEc------CCC
Q 022469 55 YMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD------APY 124 (296)
Q Consensus 55 ~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~-~k~VD~Vv~~------~py 124 (296)
++.|+|||+|.||+.++++|++.. |++++.+..++. .|. +...+.++|++|++. ++..+.+.++ ...
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~ 77 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP 77 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence 368999999999999999999875 677766655542 343 355799999999984 5444444332 112
Q ss_pred CccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHHCCeEEEcCCC---------------------------
Q 022469 125 AITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT--------------------------- 174 (296)
Q Consensus 125 ~~t~efl~~ll~~~~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~~v~rt--------------------------- 174 (296)
++|.+.++.+.++++ .+ +.++|.|- .....|.+--++++ ...+.+++|.
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~-~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~ 156 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLE-LVHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHNP 156 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHH-hCcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcCC
Confidence 345677776666552 33 78889884 33446664333433 3344444441
Q ss_pred -CCCCHHHHHHHHhh
Q 022469 175 -EGVSSTDIVGRMLL 188 (296)
Q Consensus 175 -~~VSST~Ir~rIl~ 188 (296)
..||||+||+++..
T Consensus 157 ~~~iSST~IR~~l~~ 171 (193)
T TIGR00482 157 RVPISSTEIRQRIRQ 171 (193)
T ss_pred ccccCHHHHHHHHHc
Confidence 24899999999874
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=1.5e-12 Score=126.26 Aligned_cols=47 Identities=40% Similarity=0.800 Sum_probs=45.0
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCCC
Q 022469 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPS 295 (296)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~~ 295 (296)
.++|+++||||++|+||+.||++||++||.||||+|||.++++.||.
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~ 378 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGE 378 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCC
Confidence 56999999999999999999999999999999999999999998874
No 49
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.29 E-value=5.9e-11 Score=114.18 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=87.8
Q ss_pred CCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc-CCcc--EEEEcCCCC-
Q 022469 50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVD--EVISDAPYA- 125 (296)
Q Consensus 50 ~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~-k~VD--~Vv~~~py~- 125 (296)
+...++++|.||++|.||+.++++|.+.+|+|+|++.+..... .+ +..++.+||++|++.+ +.+| .+.. .|..
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~-~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~-~pi~d 81 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR-SI-KNPFSFEERAQMIRAALAGIDLARVTI-RPLRD 81 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC-cC-CCCCCHHHHHHHHHHHhhcCCCceEEE-EECCC
Confidence 4557899999999999999999999999999999998653221 12 2458999999999974 4443 3322 2211
Q ss_pred --c-cHHHHHH---HHH---hcCccEEEEcCCCCcCCCCCchHH-HHHHCCeEEEcCCCCCCCHHHHHHHHhhch
Q 022469 126 --I-TKDFMKK---LFD---EYNIDYIIHGDDPCVLPDGTDAYE-LAKKAGRYKQIKRTEGVSSTDIVGRMLLCV 190 (296)
Q Consensus 126 --~-t~efl~~---ll~---~~~~d~VV~GdD~~fg~~g~d~y~-~lk~~g~v~~v~rt~~VSST~Ir~rIl~~~ 190 (296)
. +.-+... .+. ..++|+++.|+|... ..-|. +..+.+ +..++..+++|+|+||++|+...
T Consensus 82 ~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~----~~~~~~~f~~~~-~~~~~~~~~~s~T~iR~~~~~~~ 151 (340)
T PRK05379 82 SLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDA----SSYYLRSFPQWE-LVDVPNTEDLSATEIRDAYFEGR 151 (340)
T ss_pred CCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCC----ChHHHHhccccc-cccCCcccccCccHHHHHHHcCC
Confidence 1 2223222 221 257899999977521 11222 112222 44566678999999999998643
No 50
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.28 E-value=8e-11 Score=103.28 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=86.3
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc-CCc--cEEEEc--------
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWV--DEVISD-------- 121 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~-k~V--D~Vv~~-------- 121 (296)
.+++.|+|||+|.||+.+++++ ...|++++.+.... ..+ ++..+.++|++|++.+ +.. +.+.+.
T Consensus 4 i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~~ 78 (174)
T PRK08887 4 IAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELYA 78 (174)
T ss_pred EEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhcc
Confidence 5899999999999999999996 45688887765421 112 2667999999999863 322 233221
Q ss_pred -CCCCccHHHHHHHHHhcC-cc-EEEEcCCCC-cCCCCCchHHHHHHCCeEEEcCCCCCCCHHHHHHHHhhc
Q 022469 122 -APYAITKDFMKKLFDEYN-ID-YIIHGDDPC-VLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC 189 (296)
Q Consensus 122 -~py~~t~efl~~ll~~~~-~d-~VV~GdD~~-fg~~g~d~y~~lk~~g~v~~v~rt~~VSST~Ir~rIl~~ 189 (296)
.....|.+.+..+.++++ .+ ++++|.|-. ....|.+ ++.+.+...+.+.++...||||+||+++...
T Consensus 79 ~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~-~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g 149 (174)
T PRK08887 79 PDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYK-ADEITQRWTVMACPEKVPIRSTDIRNALQNG 149 (174)
T ss_pred CCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCC-HHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence 111234566766665552 23 566788743 3334554 4555455567777777789999999999743
No 51
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.24 E-value=8.8e-11 Score=101.59 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=80.7
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHhc-CCccEEEE------cCCCC
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAV-KWVDEVIS------DAPYA 125 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~~-k~VD~Vv~------~~py~ 125 (296)
++++|.|||+|.||+.++++|.+.+|+|+|++.+.+. .|. +..++.+||++|++.. +.-+.+.. +.|+.
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~---~~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~ 78 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDT---RDDARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEY 78 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc---ccccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCC
Confidence 5789999999999999999999999999999988753 222 4678999999999873 43222211 22321
Q ss_pred c--cHHHH---HHHHHhc---CccEEEEcCCCCcCCCCCchHHHHHHC-CeEEEcC--C-CCCCCHHHHHHHHh
Q 022469 126 I--TKDFM---KKLFDEY---NIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIK--R-TEGVSSTDIVGRML 187 (296)
Q Consensus 126 ~--t~efl---~~ll~~~---~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~~v~--r-t~~VSST~Ir~rIl 187 (296)
. -.++. ...+.+. ++|.++.|+++... .|....+. ..+..++ + ...||+|.||+...
T Consensus 79 ~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~~-----~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~ 147 (158)
T cd02167 79 PNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEAA-----FELVLAYLGAQVVLVDPDRTDISVSATQIRENPF 147 (158)
T ss_pred chhHHHHHHHHHHHHhhhcCCCCCEEEEccCcchh-----hhhHhhcCCCeEEEeccccccCCcCHHHHHhCHH
Confidence 1 11223 3333321 68899999775321 11112222 2444433 2 36799999998654
No 52
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.23 E-value=1.5e-10 Score=106.87 Aligned_cols=114 Identities=20% Similarity=0.154 Sum_probs=74.0
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCcc----EEEE-c---
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVD----EVIS-D--- 121 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD----~Vv~-~--- 121 (296)
.+++.|+||++|.||+.++++|.+.. |++++....++. .| ....+.++|++|++. ++..+ .+.+ +
T Consensus 24 IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp---~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~Ei 99 (243)
T PRK06973 24 IGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPW---QK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVATDEI 99 (243)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCC---CC-CCCCCHHHHHHHHHHHHHhccCCCceEEEeHhhh
Confidence 57999999999999999999999875 777777766542 34 567799999999985 33221 2211 1
Q ss_pred --CCCCccHHHHHHHHHhcCcc---EEEEcCCC-CcCCCCCchHHHHHHCCeEEEc
Q 022469 122 --APYAITKDFMKKLFDEYNID---YIIHGDDP-CVLPDGTDAYELAKKAGRYKQI 171 (296)
Q Consensus 122 --~py~~t~efl~~ll~~~~~d---~VV~GdD~-~fg~~g~d~y~~lk~~g~v~~v 171 (296)
...++|.+.++.+.++++++ ++++|.|- .....|.+- +.+-+...+.++
T Consensus 100 ~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~-~~L~~~~~lvV~ 154 (243)
T PRK06973 100 EHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDW-RRLFDYAHLCAA 154 (243)
T ss_pred hCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccH-HHHHHhCCEEEE
Confidence 11234567777776667444 78889884 334456643 333333334333
No 53
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.23 E-value=4.6e-11 Score=102.70 Aligned_cols=88 Identities=22% Similarity=0.377 Sum_probs=70.3
Q ss_pred CeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccEEEEcCCCCccHH
Q 022469 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYAITKD 129 (296)
Q Consensus 51 ~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~~~py~~t~e 129 (296)
++++++.|+|||++.||+.+|++|.+++|+++|+|..++ .| .|+++.+||.++++. .+..+.|-. ..|. .
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V-~~f~---~ 72 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEV-VGFS---G 72 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEE-Eecc---c
Confidence 357999999999999999999999999999999998876 34 599999999999987 344555533 2332 2
Q ss_pred HHHHHHHhcCccEEEEcC
Q 022469 130 FMKKLFDEYNIDYIIHGD 147 (296)
Q Consensus 130 fl~~ll~~~~~d~VV~Gd 147 (296)
++-++.++.++.++|.|-
T Consensus 73 Llvd~ak~~~a~~ivRGL 90 (159)
T COG0669 73 LLVDYAKKLGATVLVRGL 90 (159)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 344445779999999995
No 54
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.20 E-value=2.9e-10 Score=109.31 Aligned_cols=133 Identities=24% Similarity=0.208 Sum_probs=89.5
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHh--cCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHh-cCCccEEEEc------C
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD------A 122 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~l--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~-~k~VD~Vv~~------~ 122 (296)
.+++.|+|||+|.||+.++++|.+. .|++++.+..++ ..|. .+..+.++|++|++. ++..+.+..+ .
T Consensus 3 i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~ 79 (342)
T PRK07152 3 IAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIKRQ 79 (342)
T ss_pred EEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhCC
Confidence 5799999999999999999999986 378877775544 2454 345556999999975 4444444331 1
Q ss_pred CCCccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHHCCeEEEcCCC--------------------CCCCH
Q 022469 123 PYAITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT--------------------EGVSS 179 (296)
Q Consensus 123 py~~t~efl~~ll~~~~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~~v~rt--------------------~~VSS 179 (296)
....|.+.++.+.++++ .+ ++++|.|. ....+|.+ ++.+-....+.+++|. ..|||
T Consensus 80 ~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~-~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~iSS 158 (342)
T PRK07152 80 NVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKN-IEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNISS 158 (342)
T ss_pred CCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccC-HHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccccCH
Confidence 11345566766655552 22 78889885 34456775 4555555666666652 24999
Q ss_pred HHHHHHHhhc
Q 022469 180 TDIVGRMLLC 189 (296)
Q Consensus 180 T~Ir~rIl~~ 189 (296)
|+||+++...
T Consensus 159 T~IR~~~~~~ 168 (342)
T PRK07152 159 TKIRKGNLLG 168 (342)
T ss_pred HHHHHHHHcC
Confidence 9999998753
No 55
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.19 E-value=9.7e-11 Score=100.23 Aligned_cols=127 Identities=25% Similarity=0.311 Sum_probs=88.4
Q ss_pred CCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc----CC-cc-EEEEcC
Q 022469 49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV----KW-VD-EVISDA 122 (296)
Q Consensus 49 ~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~----k~-VD-~Vv~~~ 122 (296)
.+...|.+.|+||.+|.||..||+.|..+|+.+++|+++|+.....|..++.+.+.|++-+... +. -+ .+-++.
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~D 82 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDD 82 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecC
Confidence 4667899999999999999999999999999999999999987665667999999999977652 11 12 233457
Q ss_pred CCCccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHH-HCC----eEEEcCC-----CCCCCHHHHHHH
Q 022469 123 PYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK-KAG----RYKQIKR-----TEGVSSTDIVGR 185 (296)
Q Consensus 123 py~~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk-~~g----~v~~v~r-----t~~VSST~Ir~r 185 (296)
||..+.+ .-..+++|+...-.-++ -..+..+ +.| .+.+++. .-.+|||+||.-
T Consensus 83 p~G~t~~-------~~~~e~iVVS~ET~~~A---l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg 145 (158)
T COG1019 83 PYGPTVE-------DPDFEAIVVSPETYPGA---LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG 145 (158)
T ss_pred CCCCCCC-------cCceeEEEEccccchhH---HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence 7765422 12468999886643322 1222222 233 3444444 246999999853
No 56
>PRK13670 hypothetical protein; Provisional
Probab=99.11 E-value=3.7e-10 Score=110.59 Aligned_cols=91 Identities=22% Similarity=0.345 Sum_probs=72.3
Q ss_pred EEeCcCCcCCHHHHHHHHHHHHhcC-eEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCc----cHH
Q 022469 55 YMDGCFDMMHYGHCNALRQARALGD-QLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI----TKD 129 (296)
Q Consensus 55 ~~~G~FD~vH~GH~~lL~qAk~lgd-~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~----t~e 129 (296)
=++=-|||+|.||+.+|++|++.+. .++++|.+-..+.+ ..+.+++.++|.+++..+ +||.|++ .||.+ +++
T Consensus 5 GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~p~i~~~~~R~~~a~~~-GvD~vie-lpf~~a~~sae~ 81 (388)
T PRK13670 5 GIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GEPAIVDKWTRAKMALEN-GVDLVVE-LPFLYSVQSADF 81 (388)
T ss_pred EEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CCCCCCCHHHHHHHHHHc-CCCEEEE-eCCchHhCCHHH
Confidence 3444699999999999999999763 34455555444433 226699999999999998 8999999 88875 367
Q ss_pred HHHH---HHHhcCccEEEEcCC
Q 022469 130 FMKK---LFDEYNIDYIIHGDD 148 (296)
Q Consensus 130 fl~~---ll~~~~~d~VV~GdD 148 (296)
|++. ++++++++++|+|.|
T Consensus 82 F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 82 FAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred HHHhHHHHHHHcCCCEEEEcCC
Confidence 9886 678899999999999
No 57
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.10 E-value=1.8e-09 Score=106.15 Aligned_cols=132 Identities=15% Similarity=0.143 Sum_probs=85.8
Q ss_pred CCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChh-----hhhcCCCCCCCHHHHHHHHHhc-CCccEEEE---
Q 022469 50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-----IIANKGPPVTPLHERMIMVNAV-KWVDEVIS--- 120 (296)
Q Consensus 50 ~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~-----i~~~Kg~pi~s~eER~~~l~~~-k~VD~Vv~--- 120 (296)
+..+++++|.|||+|.||+.+|++|.+++|+|+|+|.+++. +...|.+..++.++|.++++.. +..+.|.+
T Consensus 51 ~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~ 130 (399)
T PRK08099 51 MKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAF 130 (399)
T ss_pred cCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEec
Confidence 44579999999999999999999999999999888877541 1112224688999999999984 44333322
Q ss_pred ---cCC-CCc-cHHHHH---HHHHh--cCccEEEEcCCCCcCCCCCchHHHHHH-CCeEEEcCC---CCCCCHHHHHHHH
Q 022469 121 ---DAP-YAI-TKDFMK---KLFDE--YNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKR---TEGVSSTDIVGRM 186 (296)
Q Consensus 121 ---~~p-y~~-t~efl~---~ll~~--~~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~~v~r---t~~VSST~Ir~rI 186 (296)
+.| |.. ...|.+ .++.. .++++++.|.++. .+.| ++. ...+..++. ...||+|.||+.-
T Consensus 131 ~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d-----~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR~~p 203 (399)
T PRK08099 131 NEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD-----APQY--EEHLGIETVLVDPKRTFMNISGTQIRENP 203 (399)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-----hHHH--HHhcCCceeeeccccccCCcCHHHHhhCH
Confidence 112 111 122333 33333 3688999997652 2344 343 234554543 3579999999876
Q ss_pred hh
Q 022469 187 LL 188 (296)
Q Consensus 187 l~ 188 (296)
..
T Consensus 204 ~~ 205 (399)
T PRK08099 204 FR 205 (399)
T ss_pred HH
Confidence 53
No 58
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.03 E-value=3e-09 Score=97.01 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=51.9
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcC--e-E-EEEEeCChh-hhhcCCCCCCCHHHHHHHHHh-cCCccEEEEc-----
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGD--Q-L-VVGVVSDAE-IIANKGPPVTPLHERMIMVNA-VKWVDEVISD----- 121 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd--~-L-iVgV~sD~~-i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~~----- 121 (296)
..++.|+|||+|.||+.++++|.+..+ . + ++.+...+. ....| ....+.++|++|++. +...+.+.+.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~ 80 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGK-KGLASAKHRVAMCRLAVQSSDWIRVDDWESL 80 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCC-CCCCCHHHHHHHHHHHHccCCCEEEEehhcc
Confidence 467889999999999999999988752 2 1 221111111 11123 467799999999984 5444433331
Q ss_pred -CCCCccHHHHHHHHHhc
Q 022469 122 -APYAITKDFMKKLFDEY 138 (296)
Q Consensus 122 -~py~~t~efl~~ll~~~ 138 (296)
..+..|-+.++.+.+++
T Consensus 81 ~~~~syT~~TL~~l~~~~ 98 (225)
T cd09286 81 QPEWMRTAKVLRHHREEI 98 (225)
T ss_pred CCccccHHHHHHHHHHHh
Confidence 11223556676665555
No 59
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.03 E-value=1.7e-09 Score=96.90 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=50.0
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~ 112 (296)
...+++|.|.|+|.||+++|++|.+.+|+|+|+|.|....... +..+|..||..|++..
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a 63 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNI--KNPFLAIEREQMILSN 63 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence 4689999999999999999999999999999999985432221 3568999999999884
No 60
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=98.96 E-value=9.8e-10 Score=91.83 Aligned_cols=46 Identities=39% Similarity=0.785 Sum_probs=42.1
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCC
Q 022469 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (296)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~ 294 (296)
.+++++.|+||+||.||+.+|++|++.+++++|+++.|+.++..|+
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~ 46 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKR 46 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCC
Confidence 3789999999999999999999999999999999999988776554
No 61
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=98.94 E-value=8.6e-10 Score=91.27 Aligned_cols=43 Identities=37% Similarity=0.684 Sum_probs=38.5
Q ss_pred EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCC
Q 022469 252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (296)
Q Consensus 252 v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~ 294 (296)
|++.|+||++|.||+++|++|+++|++++||+++|+....++.
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~ 43 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQK 43 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCC
Confidence 5789999999999999999999999999999999987655443
No 62
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=98.93 E-value=1e-09 Score=108.97 Aligned_cols=50 Identities=38% Similarity=0.668 Sum_probs=46.0
Q ss_pred CCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCCC
Q 022469 246 GPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPS 295 (296)
Q Consensus 246 ~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~~ 295 (296)
..++++||+.|+||++|.||+++|++|+++|++|+|||++|+.++++||.
T Consensus 337 ~~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~ 386 (473)
T PRK11316 337 ARGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGE 386 (473)
T ss_pred hcCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCC
Confidence 34579999999999999999999999999999999999999999887764
No 63
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=98.93 E-value=7.5e-10 Score=103.83 Aligned_cols=47 Identities=34% Similarity=0.558 Sum_probs=43.4
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCchhhhhcCCC
Q 022469 249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTVRLKNPS 295 (296)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~livgv~~d~~~~~~k~~ 295 (296)
--.||.||.|||||.||.++|+|||+.. -||||||.+|+...++||.
T Consensus 63 PVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~ 111 (348)
T KOG2804|consen 63 PVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGR 111 (348)
T ss_pred ceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCc
Confidence 3679999999999999999999999865 5999999999999999996
No 64
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.93 E-value=2.9e-08 Score=91.07 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCCCeEEEEeCcCCcCCHHHHHHHHHHHHhc--CeE-EEEEeCChhh-hhcCCCCCCCHHHHHHHHH-hcCCccEEEE--
Q 022469 48 KKKPVRVYMDGCFDMMHYGHCNALRQARALG--DQL-VVGVVSDAEI-IANKGPPVTPLHERMIMVN-AVKWVDEVIS-- 120 (296)
Q Consensus 48 ~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lg--d~L-iVgV~sD~~i-~~~Kg~pi~s~eER~~~l~-~~k~VD~Vv~-- 120 (296)
.+..+..++.|+|||+|.||+.+++.|++.. +.+ +|.+...|.- ...| ....+.++|++|++ ++..-..+.+
T Consensus 19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~V~~ 97 (236)
T PLN02945 19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK-KGLASAEHRIQMCQLACEDSDFIMVDP 97 (236)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc-CCCCCHHHHHHHHHHHhcCCCCeEecH
Confidence 3344456777899999999999999988764 333 3332222211 1122 35679999999997 4443332222
Q ss_pred ----cCCCCccHHHHHHHHHhcC---------cc-EEEEcCCC
Q 022469 121 ----DAPYAITKDFMKKLFDEYN---------ID-YIIHGDDP 149 (296)
Q Consensus 121 ----~~py~~t~efl~~ll~~~~---------~d-~VV~GdD~ 149 (296)
...+..|.+.+..+.++++ ++ +.++|.|-
T Consensus 98 ~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 140 (236)
T PLN02945 98 WEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL 140 (236)
T ss_pred HHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence 1112335566766655552 23 78899984
No 65
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=98.92 E-value=1.4e-09 Score=79.44 Aligned_cols=44 Identities=39% Similarity=0.572 Sum_probs=40.5
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCC
Q 022469 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (296)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~ 294 (296)
|+++.|+||++|.||+.+|++|++.++.++|++.+|+..+..|.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~ 44 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG 44 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCC
Confidence 57899999999999999999999999999999999988887654
No 66
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=98.92 E-value=1.3e-09 Score=92.68 Aligned_cols=47 Identities=43% Similarity=0.815 Sum_probs=43.0
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCC
Q 022469 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (296)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~ 294 (296)
++++||+.|+||.+|.||+.+|++|++.|++++||++.|+.....++
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~ 56 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKG 56 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCC
Confidence 46899999999999999999999999999999999999998776554
No 67
>PRK13671 hypothetical protein; Provisional
Probab=98.90 E-value=8.2e-09 Score=97.84 Aligned_cols=89 Identities=21% Similarity=0.380 Sum_probs=70.8
Q ss_pred EeCcCCcCCHHHHHHHHHHHHh--cCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHhcCCccEEEEcCCCCc----cH
Q 022469 56 MDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAI----TK 128 (296)
Q Consensus 56 ~~G~FD~vH~GH~~lL~qAk~l--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~~k~VD~Vv~~~py~~----t~ 128 (296)
++=.|||+|.||..++++|++. +|.+++.+..++ ..|+ +.+++.++|.+|+..+ +||-|++ .|+.+ .+
T Consensus 5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~~~-G~DLViE-LP~~~a~~sAe 79 (298)
T PRK13671 5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIALKY-GVDKVIK-LPFEYATQAAH 79 (298)
T ss_pred EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHHHc-CCCEEEe-ccHHHHhhchH
Confidence 4457999999999999999997 477887776676 2566 5677999999999998 8999998 77643 23
Q ss_pred HHHH---HHHHhcCccEEEEcCCC
Q 022469 129 DFMK---KLFDEYNIDYIIHGDDP 149 (296)
Q Consensus 129 efl~---~ll~~~~~d~VV~GdD~ 149 (296)
.|.. .+++.+++|.++.|.+.
T Consensus 80 ~FA~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 80 IFAKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC
Confidence 4433 26788999999999764
No 68
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.88 E-value=3.5e-09 Score=90.17 Aligned_cols=47 Identities=38% Similarity=0.665 Sum_probs=42.6
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCC
Q 022469 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (296)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~ 294 (296)
++++|++.|+||.+|.||..+|++|++.++.++|++++|+.++..++
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~ 49 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPG 49 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCC
Confidence 46889999999999999999999999999999999999987775543
No 69
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=98.86 E-value=4.2e-09 Score=98.99 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=86.5
Q ss_pred HHhhcCCC-CeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhh-hhcCC--CCCCCHHHHHHHHHhcCCccEE
Q 022469 43 QWTRKKKK-PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG--PPVTPLHERMIMVNAVKWVDEV 118 (296)
Q Consensus 43 ~~~~~~~~-~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i-~~~Kg--~pi~s~eER~~~l~~~k~VD~V 118 (296)
+.++...+ -..|.+.|+ +|.||+.+|++|++.++.++|.+..+|.- ..... ..+.+.++|.++++++ +||.+
T Consensus 15 ~~~~~~~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~v 90 (277)
T cd00560 15 RNWRAQGKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLL 90 (277)
T ss_pred HHHHHcCCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEE
Confidence 33343333 446778999 99999999999999998888888777642 21122 3588999999999998 89988
Q ss_pred EEcCCCC--ccHHHHHHHHHhcCccEEEEcC----------------------C-CCcCCCCCchHHHHHHC
Q 022469 119 ISDAPYA--ITKDFMKKLFDEYNIDYIIHGD----------------------D-PCVLPDGTDAYELAKKA 165 (296)
Q Consensus 119 v~~~py~--~t~efl~~ll~~~~~d~VV~Gd----------------------D-~~fg~~g~d~y~~lk~~ 165 (296)
+. ..+. .+.+|+..+++..++..+++|. | ++||.++.+....+++.
T Consensus 91 F~-p~~~~m~p~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~ 161 (277)
T cd00560 91 FA-PSVEEMYPEGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRM 161 (277)
T ss_pred EC-CCHHHcCCCCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHH
Confidence 53 2221 2345554344557899999999 9 99999888888888775
No 70
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.86 E-value=4.1e-08 Score=94.47 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=87.6
Q ss_pred CeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccEEEE--cCCCC--
Q 022469 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS--DAPYA-- 125 (296)
Q Consensus 51 ~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~--~~py~-- 125 (296)
..++++.|+|||+|.||+.++++|.+++|.++|.|..+ + .+.++.++|++|++. ++..+.|.. ..+|.
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~is 211 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYIIS 211 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCceec
Confidence 34699999999999999999999999999998888532 1 469999999999987 444443322 22231
Q ss_pred ---ccH-------------H------HHHHHHHhcCccEEEEcCCCCcCCCCCchHHH-HH---------HCCeEEEcCC
Q 022469 126 ---ITK-------------D------FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYEL-AK---------KAGRYKQIKR 173 (296)
Q Consensus 126 ---~t~-------------e------fl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~-lk---------~~g~v~~v~r 173 (296)
|+. . |-+.+...+++..-.+|..|.--- ...|+. ++ ..-++..++|
T Consensus 212 ~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~--t~~yn~~m~~~~~~~~~~~~I~~~~I~R 289 (332)
T TIGR00124 212 RATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV--TALYNQKMKYWLEEPNDAPPIEVVEIQR 289 (332)
T ss_pred cccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh--HHHHHHHHHHhhhccCCCCCcEEEEEee
Confidence 110 0 111123347888999999986321 234542 22 1236778888
Q ss_pred C----CCCCHHHHHHHHh
Q 022469 174 T----EGVSSTDIVGRML 187 (296)
Q Consensus 174 t----~~VSST~Ir~rIl 187 (296)
. .-+|.|.||+.|.
T Consensus 290 ~~~~~~~~SASaIR~~L~ 307 (332)
T TIGR00124 290 KLAAGGPISASTVRELLA 307 (332)
T ss_pred ecCCCCeeCHHHHHHHHH
Confidence 3 3589999999984
No 71
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.84 E-value=5.1e-09 Score=83.95 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=49.3
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc
Q 022469 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112 (296)
Q Consensus 54 V~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~ 112 (296)
+++.|+||++|.||+.++++|+++++.+++++..++.... ..++.+.++|.++++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~--~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV--WQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc--cCChHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988764321 13688999999999986
No 72
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=98.72 E-value=2e-08 Score=83.18 Aligned_cols=40 Identities=38% Similarity=0.739 Sum_probs=37.5
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhh
Q 022469 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289 (296)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~ 289 (296)
++|++.|+||.+|.||+.+|++|++.++.|+|++++|+..
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~ 41 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN 41 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH
Confidence 6899999999999999999999999999999999999743
No 73
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=98.67 E-value=3.2e-08 Score=93.27 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=77.7
Q ss_pred eEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhh-hhcCC--CCCCCHHHHHHHHHhcCCccEEEEcCCCC--c
Q 022469 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYA--I 126 (296)
Q Consensus 52 ~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i-~~~Kg--~pi~s~eER~~~l~~~k~VD~Vv~~~py~--~ 126 (296)
.-|.+.|+ +|.||+.+|++|++.++.+++.+..+|.- ..... +.++|.++|.++++++ +||.++.- .+. .
T Consensus 25 ~~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p-~~~~my 99 (281)
T PRK00380 25 GLVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAP-SVEEMY 99 (281)
T ss_pred EEEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeC-CHHHCC
Confidence 34567777 99999999999999998777777666632 21111 3688999999999998 89999862 211 1
Q ss_pred cHHHHHHHHHhcCccEEEEcC----------------------CC-CcCCCCCchHHHHHHC
Q 022469 127 TKDFMKKLFDEYNIDYIIHGD----------------------DP-CVLPDGTDAYELAKKA 165 (296)
Q Consensus 127 t~efl~~ll~~~~~d~VV~Gd----------------------D~-~fg~~g~d~y~~lk~~ 165 (296)
+++|...+.. -++..+++|. |+ +||.+..+....+++.
T Consensus 100 p~~f~~~i~~-~~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~ 160 (281)
T PRK00380 100 PQGLQTYVSV-PGLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRM 160 (281)
T ss_pred CccceeEEEc-ccccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHH
Confidence 3455433221 1377999999 99 8998888777777765
No 74
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.62 E-value=2.3e-07 Score=81.59 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=51.4
Q ss_pred CCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh
Q 022469 50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111 (296)
Q Consensus 50 ~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~ 111 (296)
++.+++++|.|.|+|.||+.+++.|.+..|+|+|+|.|+..-..- ...+|..||..|++.
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~--~nPfTagER~~mi~~ 61 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTL--KNPFTAGERIPMIRD 61 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCcccccc--cCCCCccchhHHHHH
Confidence 467899999999999999999999999999999999997643222 356888999999985
No 75
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.52 E-value=2.4e-07 Score=88.74 Aligned_cols=63 Identities=22% Similarity=0.188 Sum_probs=51.0
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccE
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDE 117 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~ 117 (296)
++++.|+|||+|.||+.++++|.+++|+|+|++...+.. .|..+..+.++|++|++. ++....
T Consensus 3 i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~~--~~~~~~~~~~~R~~~l~~~~~~~~~ 66 (325)
T TIGR01526 3 IGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFYD--SKAKRPPPVQDRLRWLREIFKYQKN 66 (325)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcC--ccCCCCCCHHHHHHHHHHHhccCCC
Confidence 589999999999999999999999999999988763211 133578899999999986 454444
No 76
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.24 E-value=2.6e-06 Score=78.48 Aligned_cols=135 Identities=23% Similarity=0.280 Sum_probs=88.3
Q ss_pred hhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhc-CeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHh----cCC---
Q 022469 45 TRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNA----VKW--- 114 (296)
Q Consensus 45 ~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lg-d~LiVgV~sD~~i~~~Kg--~pi~s~eER~~~l~~----~k~--- 114 (296)
..+..+..++...|+||=+|.||.-+|..|..++ +.++|||+.|+.+.+ |- ..+-+.++|++.+.. +|.
T Consensus 136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~k-K~~~Eliepie~R~~~V~~Fl~~IKp~l~ 214 (293)
T KOG3351|consen 136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKK-KVLKELIEPIEERKEHVSNFLKSIKPDLN 214 (293)
T ss_pred ccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHH-hHHHHHhhhHHHHHHHHHHHHHhcCCCce
Confidence 3456677889999999999999999999999998 789999998886543 33 368899999998765 331
Q ss_pred ccEEEEcCCCCccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHHCC--eEEEcCC---CCCCCHHHHHHHHh
Q 022469 115 VDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG--RYKQIKR---TEGVSSTDIVGRML 187 (296)
Q Consensus 115 VD~Vv~~~py~~t~efl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~lk~~g--~v~~v~r---t~~VSST~Ir~rIl 187 (296)
|+.+=+-.||..+.. .-..+++|+...-..|+..-.....-+-.- .+.++.- .+.+|+|++++...
T Consensus 215 ~~~vpi~Dp~GPt~~-------d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~~~~kls~t~~~~~kv 285 (293)
T KOG3351|consen 215 VRVVPIHDPFGPTIT-------DPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLYDAQKLSSTENRELKV 285 (293)
T ss_pred EEEEecccCCCCCcc-------CCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeeccChhhcchhHHHHhhh
Confidence 333322266654311 135788998887655543322111111111 2333333 35699999987543
No 77
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.11 E-value=3.8e-06 Score=74.28 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=40.8
Q ss_pred CCCCCCeEEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCchhhhh
Q 022469 244 GPGPDARIIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRL 291 (296)
Q Consensus 244 ~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g-~~livgv~~d~~~~~ 291 (296)
.+......|.+.|+||-+|.||..+|++|.+.+ +.++||+++|+....
T Consensus 14 ~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~ 62 (177)
T PLN02388 14 SPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSK 62 (177)
T ss_pred CCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcc
Confidence 333346789999999999999999999999988 489999999987643
No 78
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.04 E-value=5.9e-06 Score=70.48 Aligned_cols=38 Identities=37% Similarity=0.533 Sum_probs=34.8
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCch
Q 022469 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (296)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~ 287 (296)
++++..|+||++|.||+.++++|.+.+|.|+|++..+.
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np 39 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP 39 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC
Confidence 57899999999999999999999999999998887653
No 79
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=98.02 E-value=5.6e-05 Score=66.77 Aligned_cols=122 Identities=22% Similarity=0.221 Sum_probs=82.2
Q ss_pred cCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCccEEEE--cCCCC-----cc---
Q 022469 59 CFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS--DAPYA-----IT--- 127 (296)
Q Consensus 59 ~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~VD~Vv~--~~py~-----~t--- 127 (296)
+=.|+++||+.|+++|.+.+|.|.|=|.+.+ ..+++.++|++|+++ ++..+.|.. +-+|. |+
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsYF 79 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSYF 79 (182)
T ss_pred cCCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhhh
Confidence 5689999999999999999999866555432 358999999999987 444444422 23331 11
Q ss_pred ---------------HH-HHHHHHHhcCccEEEEcCCCCcCCCCCchHHH-HHH----C-CeEEEcCCC----CCCCHHH
Q 022469 128 ---------------KD-FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYEL-AKK----A-GRYKQIKRT----EGVSSTD 181 (296)
Q Consensus 128 ---------------~e-fl~~ll~~~~~d~VV~GdD~~fg~~g~d~y~~-lk~----~-g~v~~v~rt----~~VSST~ 181 (296)
.. |.+.+...+++..-.+|..|.--- ...|+. +++ . -.+.+++|. +.||.|.
T Consensus 80 lK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~v--T~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISAS~ 157 (182)
T PF08218_consen 80 LKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPV--TRIYNEAMKEILPPYGIEVVEIPRKEINGEPISASR 157 (182)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHH--HHHHHHHHHHhccccCCEEEEEecccCCCcEEcHHH
Confidence 01 222244558999999999985321 234542 222 2 478899995 4699999
Q ss_pred HHHHHhhc
Q 022469 182 IVGRMLLC 189 (296)
Q Consensus 182 Ir~rIl~~ 189 (296)
.|+.|...
T Consensus 158 VR~~l~~~ 165 (182)
T PF08218_consen 158 VRKLLKEG 165 (182)
T ss_pred HHHHHHcC
Confidence 99998743
No 80
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=98.00 E-value=3.1e-05 Score=73.14 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=55.9
Q ss_pred HHHhhcCCC-CeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhh-hhcCC--CCCCCHHHHHHHHHhcCCccE
Q 022469 42 LQWTRKKKK-PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG--PPVTPLHERMIMVNAVKWVDE 117 (296)
Q Consensus 42 ~~~~~~~~~-~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i-~~~Kg--~pi~s~eER~~~l~~~k~VD~ 117 (296)
...++...+ ---|.+.|+ +|.||+.+|++|++.++.++|.+..+|.- ..... +.+++.++|.++++++ +||.
T Consensus 14 ~~~~~~~g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~ 89 (282)
T TIGR00018 14 IRQLRMEGKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDV 89 (282)
T ss_pred HHHHHHcCCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCE
Confidence 333444443 335678999 99999999999999999888887766642 22121 4688999999999998 8998
Q ss_pred EEE
Q 022469 118 VIS 120 (296)
Q Consensus 118 Vv~ 120 (296)
++.
T Consensus 90 vf~ 92 (282)
T TIGR00018 90 VFA 92 (282)
T ss_pred EEC
Confidence 875
No 81
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.97 E-value=1.3e-05 Score=78.86 Aligned_cols=90 Identities=22% Similarity=0.413 Sum_probs=39.1
Q ss_pred EeCcCCcCCHHHHHHHHHHHHhc-CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHhcCCccEEEEcCCCCcc----HH
Q 022469 56 MDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAIT----KD 129 (296)
Q Consensus 56 ~~G~FD~vH~GH~~lL~qAk~lg-d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t----~e 129 (296)
++=-|+|||.||+-.|+++|+.. ...+|+|.|-..+. .| |-+++-.+|.++.-.+ |+|-|++ .|+.++ +.
T Consensus 6 IIaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQ--RGEPAi~dKw~RA~~AL~~-GaDLViE-LP~~~a~qsA~~ 81 (388)
T PF05636_consen 6 IIAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQ--RGEPAIIDKWTRAEMALKN-GADLVIE-LPVVYALQSAEY 81 (388)
T ss_dssp -E---TT--HHHHHHHHHHH---TSSEEEEEE--TTSB--TSSB-SS-HHHHHHHHHHH-T-SEEEE----G--------
T ss_pred eEEeECCccHHHHHHHHHHhccCCCCEEEEEECCCccc--CCCeeeCCHHHHHHHHHHc-CCCEEEE-CCCccccccccc
Confidence 34469999999999999999874 23455566654442 45 7799999999998887 8999999 786542 34
Q ss_pred HHHH---HHHhcCccEEEEcCCC
Q 022469 130 FMKK---LFDEYNIDYIIHGDDP 149 (296)
Q Consensus 130 fl~~---ll~~~~~d~VV~GdD~ 149 (296)
|..- +++.++||+++.|-+.
T Consensus 82 FA~gaV~lL~~lgvd~l~FGsE~ 104 (388)
T PF05636_consen 82 FARGAVSLLNALGVDYLSFGSES 104 (388)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 4332 6788899999988653
No 82
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=97.96 E-value=9.9e-06 Score=64.82 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=35.7
Q ss_pred EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhh
Q 022469 252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR 290 (296)
Q Consensus 252 v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~ 290 (296)
+++.|+||.+|.||+.++++|++.+|.+++++.++....
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCccc
Confidence 677999999999999999999999999999999887654
No 83
>PLN02660 pantoate--beta-alanine ligase
Probab=97.93 E-value=5.1e-05 Score=71.72 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=56.5
Q ss_pred HHHHhhcCCC-CeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhh-hhcCC--CCCCCHHHHHHHHHhcCCcc
Q 022469 41 WLQWTRKKKK-PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG--PPVTPLHERMIMVNAVKWVD 116 (296)
Q Consensus 41 ~~~~~~~~~~-~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i-~~~Kg--~pi~s~eER~~~l~~~k~VD 116 (296)
+.+.++...+ ---|.+.|+ +|.||+.+|++|++.++.+++.+..+|.- ..... +.++|.++|.++++++ +||
T Consensus 12 ~~~~~~~~g~~igfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD 87 (284)
T PLN02660 12 WSRAQRAQGKRIALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVD 87 (284)
T ss_pred HHHHHHHcCCeEEEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCC
Confidence 3333444443 345788898 99999999999999999777777766643 22122 4688999999999998 899
Q ss_pred EEEE
Q 022469 117 EVIS 120 (296)
Q Consensus 117 ~Vv~ 120 (296)
.++.
T Consensus 88 ~vf~ 91 (284)
T PLN02660 88 AVFN 91 (284)
T ss_pred EEEC
Confidence 8874
No 84
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.69 E-value=0.0001 Score=71.78 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=63.3
Q ss_pred cCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCcc---HHHH-H
Q 022469 59 CFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAIT---KDFM-K 132 (296)
Q Consensus 59 ~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t---~efl-~ 132 (296)
-|||+|.||+.+|++|+++. |..++++.-| ... +..+++.+-.+|.++..+. ++|.|++ .|+..+ .++. .
T Consensus 9 eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~q-Rgepai~~k~~r~~~aL~~-g~D~VIe-lP~~~s~q~a~~fa~ 84 (358)
T COG1323 9 EYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQ-RGEPAIGHKWERKKMALEG-GADLVIE-LPLERSGQGAPYFAT 84 (358)
T ss_pred ecCcccccHHHHHHHHHHhccCCceEEeeecc-hhh-cCCCccccHHHHHhhhhhc-CceEEEE-cceEEecCCCchhhH
Confidence 59999999999999999853 5555555444 332 2337899999999999997 8999999 786532 2222 1
Q ss_pred ---HHHHhcCccEEEEcCCC
Q 022469 133 ---KLFDEYNIDYIIHGDDP 149 (296)
Q Consensus 133 ---~ll~~~~~d~VV~GdD~ 149 (296)
.+++.+++|.|+.|-..
T Consensus 85 ~av~il~~l~~~~i~fgse~ 104 (358)
T COG1323 85 RAVRILNALGGDDIAFGSPP 104 (358)
T ss_pred HHHHHHHhcCCCeEEEeCCC
Confidence 25677889988888654
No 85
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=97.61 E-value=5.5e-05 Score=69.88 Aligned_cols=51 Identities=33% Similarity=0.640 Sum_probs=43.4
Q ss_pred CCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCchhhhhc
Q 022469 242 GKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRLK 292 (296)
Q Consensus 242 ~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g-~~livgv~~d~~~~~~ 292 (296)
+..|..+-.++.+.|+||-+|.||--+|..|..++ |.|||||++|+.+.++
T Consensus 135 ~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK 186 (293)
T KOG3351|consen 135 KSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKK 186 (293)
T ss_pred cccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHh
Confidence 34444456789999999999999999999999887 7999999999988765
No 86
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.09 E-value=0.013 Score=55.82 Aligned_cols=130 Identities=20% Similarity=0.224 Sum_probs=84.8
Q ss_pred cCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEE-EEeCChhhhhcCCCCCCCHHHHHHHHHh-cCCc---------
Q 022469 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVV-GVVSDAEIIANKGPPVTPLHERMIMVNA-VKWV--------- 115 (296)
Q Consensus 47 ~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiV-gV~sD~~i~~~Kg~pi~s~eER~~~l~~-~k~V--------- 115 (296)
..+++ ++.+.-+-.|+.+||+-+++||.+.||.|.+ .|..|. ..++.++|.+|+++ .+..
T Consensus 142 ~~gkk-IgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD~--------S~f~y~~R~~Lv~~G~~~l~Nvt~Hsgs 212 (352)
T COG3053 142 HPGKK-IGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKEDS--------SLFPYEDRLDLVKKGTADLPNVTVHSGS 212 (352)
T ss_pred cCCCe-eEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEeccc--------ccCCHHHHHHHHHHhhccCCceEEecCC
Confidence 33344 4666678999999999999999999998744 444453 47899999999986 4444
Q ss_pred cEEEEcCCCC--c--------------cHHHHHH-HHHhcCccEEEEcCCCCcCCCCCchHH-----HHHHCC------e
Q 022469 116 DEVISDAPYA--I--------------TKDFMKK-LFDEYNIDYIIHGDDPCVLPDGTDAYE-----LAKKAG------R 167 (296)
Q Consensus 116 D~Vv~~~py~--~--------------t~efl~~-ll~~~~~d~VV~GdD~~fg~~g~d~y~-----~lk~~g------~ 167 (296)
|++|..+.|- | +.....+ +...+++..-.+|..|.--- ...|. ++.+.. .
T Consensus 213 dYiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~v--T~~YNq~M~~~L~~~~~~~p~I~ 290 (352)
T COG3053 213 DYIISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRV--TAIYNQQMRYWLEDPTISAPPIE 290 (352)
T ss_pred CeEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHH--HHHHHHHHHHHHhccCCCCCceE
Confidence 4444433331 0 0111112 34457889999999874211 12232 333332 5
Q ss_pred EEEcCCC----CCCCHHHHHHHHh
Q 022469 168 YKQIKRT----EGVSSTDIVGRML 187 (296)
Q Consensus 168 v~~v~rt----~~VSST~Ir~rIl 187 (296)
+++++|. ..||.|..|+.+.
T Consensus 291 vvei~Rk~~~~~~ISAS~VR~~l~ 314 (352)
T COG3053 291 VVEIERKKYQEMPISASRVRQLLA 314 (352)
T ss_pred EEEeehhhhcCCcccHHHHHHHHH
Confidence 7788884 5799999999876
No 87
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.07 E-value=0.00062 Score=67.27 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=36.0
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCch
Q 022469 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (296)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~ 287 (296)
.+++++-|.||.+|.||+.++++|.+.+|.|+|+|.++.
T Consensus 52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~ 90 (399)
T PRK08099 52 KKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDD 90 (399)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccC
Confidence 578999999999999999999999999999999888775
No 88
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=97.04 E-value=0.0089 Score=58.92 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=69.4
Q ss_pred hHHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHh--cCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC-Cc
Q 022469 39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK-WV 115 (296)
Q Consensus 39 ~~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~l--gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k-~V 115 (296)
.++++.+++..-. +|+..=+||++|.||..++++|.+. .|.|++....-+ .| +-.++.+-|+++++.+. +.
T Consensus 172 ~e~r~~f~~~gw~-~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k-~~~~~~~~R~~~~~~~~~~~ 245 (383)
T TIGR00339 172 AELREEFKERGWD-TVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TK-PGDIPAEVRMRAYEVLKEGY 245 (383)
T ss_pred HHHHHHHHHcCCC-eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHhhC
Confidence 4555555444443 5777889999999999999999997 676665443332 23 25788999999998742 21
Q ss_pred ---cEE-EEcCCCCc----cHHHHHH--HHHhcCccEEEEcCCCC
Q 022469 116 ---DEV-ISDAPYAI----TKDFMKK--LFDEYNIDYIIHGDDPC 150 (296)
Q Consensus 116 ---D~V-v~~~py~~----t~efl~~--ll~~~~~d~VV~GdD~~ 150 (296)
+.+ +...|+.+ +.+.+.. +.++|+|.++++|-|..
T Consensus 246 ~~~~~~~l~~~~~em~~agpreall~Aiir~nyG~th~IiG~Dha 290 (383)
T TIGR00339 246 PNPERVMLTFLPLAMRYAGPREAIWHAIIRKNYGATHFIVGRDHA 290 (383)
T ss_pred CCCCceEEEecchHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 122 22133321 2344444 55679999999999864
No 89
>PRK07143 hypothetical protein; Provisional
Probab=96.96 E-value=0.0014 Score=61.98 Aligned_cols=40 Identities=25% Similarity=0.567 Sum_probs=36.0
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchh
Q 022469 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT 288 (296)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~ 288 (296)
...|++-|.||-+|.||..+|++|++.++.++|...++..
T Consensus 15 ~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~ 54 (279)
T PRK07143 15 EKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPE 54 (279)
T ss_pred CCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChH
Confidence 5679999999999999999999999999999998887743
No 90
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=96.90 E-value=0.0011 Score=63.95 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=35.5
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 022469 247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285 (296)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~ 285 (296)
+++++..+.|+||+||.||+.+.++|.+++|.++|.|-.
T Consensus 137 ~~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~ 175 (332)
T TIGR00124 137 PGNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVK 175 (332)
T ss_pred CCCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEe
Confidence 346999999999999999999999999999998888864
No 91
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=96.84 E-value=0.00088 Score=63.98 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=31.1
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEE---EEEEeCchh
Q 022469 251 IIYIDGAFDLFHAGHVEILRIARGLGDFL---LVGIHNDQT 288 (296)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~l---ivgv~~d~~ 288 (296)
.|++.|+||.+|.||..+|++|++.++.+ .+.++-|..
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~ 55 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPH 55 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 79999999999999999999999988654 245555543
No 92
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=95.97 E-value=0.054 Score=51.36 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=45.7
Q ss_pred HHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChh-hhhcCC--CCCCCHHHHHHHHHhcCCcc
Q 022469 40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-IIANKG--PPVTPLHERMIMVNAVKWVD 116 (296)
Q Consensus 40 ~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~-i~~~Kg--~pi~s~eER~~~l~~~k~VD 116 (296)
++.+.++...+.+ -+.-+-=-+|-||+.|+++|++.+|.++|.|.-+|. +..... ...-+.++=++++++. +||
T Consensus 12 ~~~~~~~~~~~~i--gfVPTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD 88 (280)
T PF02569_consen 12 EWIRAWRKAGKTI--GFVPTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVD 88 (280)
T ss_dssp HHHHHHHHTTSSE--EEEEE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-S
T ss_pred HHHHHHHHcCCeE--EEECCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCC
Confidence 3445555555543 333456667999999999999999999998876663 211111 2345667778888887 899
Q ss_pred EEEE
Q 022469 117 EVIS 120 (296)
Q Consensus 117 ~Vv~ 120 (296)
.++.
T Consensus 89 ~vF~ 92 (280)
T PF02569_consen 89 AVFA 92 (280)
T ss_dssp EEE-
T ss_pred EEEc
Confidence 8875
No 93
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=95.79 E-value=0.013 Score=55.74 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=34.1
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 022469 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285 (296)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~ 285 (296)
.+++.-+-|+||++|.||+.++++|.+..|.++|.+-.
T Consensus 113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~ 150 (297)
T cd02169 113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVS 150 (297)
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEc
Confidence 46999999999999999999999999999988777754
No 94
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.41 E-value=0.067 Score=54.72 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=50.5
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChh-hhhcCC--CCCCCHHHHHHHHHhcCCccEEEE
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-IIANKG--PPVTPLHERMIMVNAVKWVDEVIS 120 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~-i~~~Kg--~pi~s~eER~~~l~~~k~VD~Vv~ 120 (296)
++-+.-+-=.+|-||+.|+++|++.+|.++|.|.-+|. +..... ...-+.++=++++++. +||.|+.
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~ 90 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFA 90 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEEC
Confidence 57777788899999999999999999999988865552 211111 2345677778889987 7998864
No 95
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=95.20 E-value=1 Score=44.62 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=66.2
Q ss_pred hHHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC--C--
Q 022469 39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W-- 114 (296)
Q Consensus 39 ~~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k--~-- 114 (296)
.++++.++..... +|++.=+-+++|.||..+++.|.+.+|-|++ |+- +-..| +--++.+-|++..+++. +
T Consensus 175 ~e~r~~f~~~gw~-~VvafqTrnP~HraHe~l~~~a~e~~d~lll--~pl--vG~~k-~~di~~~~r~~~~~~~~~~y~p 248 (391)
T PRK04149 175 AETRELFEEKGWK-TVVAFQTRNPPHRAHEYLQKCALEIVDGLLL--NPL--VGETK-SGDIPAEVRMEAYEALLKNYYP 248 (391)
T ss_pred HHHHHHHHHcCCC-eEEEeecCCCCchHHHHHHHHHHHhcCeEEE--ecC--cCCCC-CCCCCHHHHHHHHHHHHHhcCC
Confidence 4555555444433 5777889999999999999999999984443 321 11112 23467788888887752 1
Q ss_pred ccEEEE-cCCCC-----ccHHHHHHHH-HhcCccEEEEcCCCC
Q 022469 115 VDEVIS-DAPYA-----ITKDFMKKLF-DEYNIDYIIHGDDPC 150 (296)
Q Consensus 115 VD~Vv~-~~py~-----~t~efl~~ll-~~~~~d~VV~GdD~~ 150 (296)
-+.+++ ..|.. ..+..+..++ ++++|..+++|-|..
T Consensus 249 ~~~v~l~~lp~~mryAGPrEa~lhAivrkN~GcTh~IvGrDHA 291 (391)
T PRK04149 249 KDRVLLSVTPAAMRYAGPREAIFHAIVRKNYGCTHFIVGRDHA 291 (391)
T ss_pred CCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 133333 12221 1234455544 459999999999874
No 96
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=95.03 E-value=0.13 Score=48.53 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=50.3
Q ss_pred HhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChh-hhhcCC--CCCCCHHHHHHHHHhcCCccEEEE
Q 022469 44 WTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-IIANKG--PPVTPLHERMIMVNAVKWVDEVIS 120 (296)
Q Consensus 44 ~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~-i~~~Kg--~pi~s~eER~~~l~~~k~VD~Vv~ 120 (296)
.|+...++ |-+.=+--.+|-||+.|+++|++.+|.++|.|.-+|. +-.+-. ...-++++=.++++.. +||.++.
T Consensus 16 ~~r~~gk~--Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~vF~ 92 (285)
T COG0414 16 ALRKEGKR--VGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIVFA 92 (285)
T ss_pred HHHHcCCE--EEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEEeC
Confidence 35555553 4444577889999999999999999999888866652 111111 2334556666777776 7988873
No 97
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=94.90 E-value=0.039 Score=51.12 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=31.3
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCc
Q 022469 249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHND 286 (296)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~livgv~~d 286 (296)
++|.+..|+||..|.||+.+.++|.+.. |.+++.-..+
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~ 61 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQ 61 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5788999999999999999999998654 6777665544
No 98
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=94.83 E-value=1.9 Score=42.20 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=65.4
Q ss_pred hHHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhc--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC--C
Q 022469 39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W 114 (296)
Q Consensus 39 ~~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lg--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k--~ 114 (296)
.+++..+.+.... +|+..=+-+++|.||..+++.|.+.+ +-|++ ++- +-..| +--++.+-|++..+++. +
T Consensus 145 ~e~R~~f~~~gw~-~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll--~pl--vG~~k-~~d~~~~~r~~~~~~l~~~y 218 (353)
T cd00517 145 AELRALFKERGWR-RVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLL--HPL--VGWTK-PGDVPDEVRMRAYEALLEEY 218 (353)
T ss_pred HHHHHHHHHcCCC-eEEEeecCCCCchhhHHHHHHHHHHcCCCcEEE--Eec--cCCCC-CCCCCHHHHHHHHHHHHHhC
Confidence 4455555444433 57778899999999999999999977 43332 221 11111 23467788888777642 3
Q ss_pred c--cEEEE-cCCCC--c---cHHHHHHHH-HhcCccEEEEcCCCC
Q 022469 115 V--DEVIS-DAPYA--I---TKDFMKKLF-DEYNIDYIIHGDDPC 150 (296)
Q Consensus 115 V--D~Vv~-~~py~--~---t~efl~~ll-~~~~~d~VV~GdD~~ 150 (296)
. |.+++ ..|+. + .+..+..++ ++++|.++++|-|..
T Consensus 219 ~~~~~~~l~~lp~~mryAGPrEallhAiirkN~GcThfIvGrDHA 263 (353)
T cd00517 219 YLPERTVLAILPLPMRYAGPREALWHAIIRKNYGATHFIVGRDHA 263 (353)
T ss_pred CCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 3 55543 12322 1 234455544 459999999999874
No 99
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=94.77 E-value=0.77 Score=41.94 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=58.6
Q ss_pred hHHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhc-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC--C-
Q 022469 39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W- 114 (296)
Q Consensus 39 ~~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lg-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k--~- 114 (296)
.++++.+.+..... |++.=+=+++|.+|..+++.|.+.+ +.|++-..--+ .| +--++.+-|++..+.+. +
T Consensus 9 ~e~r~~~~~~gw~~-VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG~----~k-~~d~~~~~r~~~~~~~~~~y~ 82 (215)
T PF01747_consen 9 AETRELFKEKGWRR-VVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVGP----TK-PGDIPYEVRVRCYEALIDNYF 82 (215)
T ss_dssp HHHHHHHHHTT-SS-EEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBESB-----S-TTSCCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhcCCCe-EEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccCC----CC-cCCCCHHHHHHHHHHHHHHhC
Confidence 45666654444332 5555569999999999999999986 65543221111 12 23467788888766631 1
Q ss_pred -ccEEEE-cCCCC--c---cHHHHHHHH-HhcCccEEEEcCCCC
Q 022469 115 -VDEVIS-DAPYA--I---TKDFMKKLF-DEYNIDYIIHGDDPC 150 (296)
Q Consensus 115 -VD~Vv~-~~py~--~---t~efl~~ll-~~~~~d~VV~GdD~~ 150 (296)
-+.+++ ..|+. + .+..+..++ ++++|..+++|-|..
T Consensus 83 p~~~v~l~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhA 126 (215)
T PF01747_consen 83 PKNRVLLSPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHA 126 (215)
T ss_dssp STTGEEEEBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT
T ss_pred CCCcEEEeccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCC
Confidence 244443 12221 1 234445544 459999999999976
No 100
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=94.08 E-value=0.054 Score=49.72 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhC
Q 022469 247 PDARIIYIDGAFDLFHAGHVEILRIARGL 275 (296)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~ 275 (296)
+...+.+..|+||..|.||+.+.+.|++.
T Consensus 20 ~~~~v~i~GGSFdP~H~gHl~ia~~a~~~ 48 (236)
T PLN02945 20 RTRVVLVATGSFNPPTYMHLRMFELARDA 48 (236)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHH
Confidence 33455566889999999999999888753
No 101
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=93.36 E-value=0.31 Score=44.79 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=48.1
Q ss_pred HHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChh-hhhcCC--CCCCCHHHHHHHHHhcCCccE
Q 022469 41 WLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-IIANKG--PPVTPLHERMIMVNAVKWVDE 117 (296)
Q Consensus 41 ~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~-i~~~Kg--~pi~s~eER~~~l~~~k~VD~ 117 (296)
+.+.+|...+. +.++ -+.--+|-||+.+++|+++..++.+|.+.-+|. +..-.. ...-+...-+..++++ +||.
T Consensus 15 w~~~~R~~g~t-IgfV-PTMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdv 91 (283)
T KOG3042|consen 15 WTQELRETGET-IGFV-PTMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDV 91 (283)
T ss_pred HHHHHHhcCCe-EEEe-cccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceE
Confidence 44445555433 2333 355668999999999999999998888766552 111011 1122334447889998 7887
Q ss_pred EE
Q 022469 118 VI 119 (296)
Q Consensus 118 Vv 119 (296)
++
T Consensus 92 vf 93 (283)
T KOG3042|consen 92 VF 93 (283)
T ss_pred EE
Confidence 76
No 102
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=93.26 E-value=2.5 Score=41.70 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=84.5
Q ss_pred hHHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC---C-
Q 022469 39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK---W- 114 (296)
Q Consensus 39 ~~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k---~- 114 (296)
.+.+..+..+ +-.+|++.=++|++|.||-.+.+.|...+|-|+| |+= +- .+.+-=.+.+-|++..+.+- +
T Consensus 172 ~~~R~~f~~k-gwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv--~pl--VG-~tk~gD~~~e~rm~~ye~l~~~Yyp 245 (397)
T COG2046 172 AETREVFKEK-GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLV--HPL--VG-ATKPGDIPDEVRMEYYEALLKHYYP 245 (397)
T ss_pred HHHHHHHHhc-CCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEE--Eee--ec-cccCCCchHHHHHHHHHHHHHhCCC
Confidence 3445555433 3446888999999999999999999999986443 211 10 11122245666776555531 2
Q ss_pred ccEEEEc-CCCCc----c-HHHHHHHH-HhcCccEEEEcCCCCcCCCCCchHH---HHHH----CC-------eEEEcCC
Q 022469 115 VDEVISD-APYAI----T-KDFMKKLF-DEYNIDYIIHGDDPCVLPDGTDAYE---LAKK----AG-------RYKQIKR 173 (296)
Q Consensus 115 VD~Vv~~-~py~~----t-~efl~~ll-~~~~~d~VV~GdD~~fg~~g~d~y~---~lk~----~g-------~v~~v~r 173 (296)
-|.+++. .|+.. + +.-+..++ ++|+|...++|-|..--.+=-|+|+ +..+ .| .+..+++
T Consensus 246 ~dr~~Ls~~~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~ 325 (397)
T COG2046 246 PDRVFLSVLPAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPK 325 (397)
T ss_pred CCcEEEEecHHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCccccCCcccHHHHHHhcccccCcEEEeccceeeccc
Confidence 3555542 22221 1 33445544 4599999999999862112224443 2222 12 1222333
Q ss_pred ------------C----CCCCHHHHHHHHhhchh
Q 022469 174 ------------T----EGVSSTDIVGRMLLCVR 191 (296)
Q Consensus 174 ------------t----~~VSST~Ir~rIl~~~~ 191 (296)
+ ..+|.|.+|++|..+.+
T Consensus 326 c~~~~~~~~cph~~~~~~~~SGt~lR~~Lr~G~~ 359 (397)
T COG2046 326 CGQMVSTKTCPHGDEHHLHISGTKLREMLRAGVK 359 (397)
T ss_pred ccCCcccccCCCCCcceEEEccHHHHHHHHcCCC
Confidence 1 25899999998877665
No 103
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=90.47 E-value=0.21 Score=47.34 Aligned_cols=36 Identities=33% Similarity=0.602 Sum_probs=25.6
Q ss_pred CCeEEEE--eCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 022469 248 DARIIYI--DGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (296)
Q Consensus 248 ~~~~v~~--~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d 286 (296)
+++|.+| -|+ +|.||+.++++|++.+|.+||.|.-+
T Consensus 21 ~~~igfVPTMGa---LHeGHlsLi~~A~~~~d~vVVSIFVN 58 (280)
T PF02569_consen 21 GKTIGFVPTMGA---LHEGHLSLIRRARAENDVVVVSIFVN 58 (280)
T ss_dssp TSSEEEEEE-SS-----HHHHHHHHHHHHHSSEEEEEE---
T ss_pred CCeEEEECCCch---hhHHHHHHHHHHHhCCCEEEEEECcC
Confidence 3455555 454 59999999999999999999999643
No 104
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=90.31 E-value=0.051 Score=54.67 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=32.5
Q ss_pred cccceeeeccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCC
Q 022469 231 PTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLG 276 (296)
Q Consensus 231 ~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g 276 (296)
|+...+.+|-.... .++++++.+|+||++|.|||.+|.++...|
T Consensus 398 p~~~ev~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 398 ATLEKVLELLRASN--LNEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CCHHHHHHHHHhcC--CCcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 33334444443333 357999999999999999999999988665
No 105
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=89.40 E-value=6.5 Score=40.84 Aligned_cols=107 Identities=16% Similarity=0.074 Sum_probs=65.6
Q ss_pred hHHHHHhhcCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC---Cc
Q 022469 39 DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK---WV 115 (296)
Q Consensus 39 ~~~~~~~~~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k---~V 115 (296)
.+++..+..... .+|+..=+-+++|.+|..+++.|.+.+|.. +-+++ .+-..| +--++.+-|++..+.+. .-
T Consensus 175 ~e~r~~f~~~gw-~~v~afqtrnP~Hr~He~l~~~a~~~~d~~-lll~p--~~G~~k-~~d~~~~~r~~~~~~~~~~~p~ 249 (568)
T PRK05537 175 AELRARFRKLGW-RRVVAFQTRNPLHRAHEELTKRAAREVGAN-LLIHP--VVGMTK-PGDIDHFTRVRCYEALLDKYPP 249 (568)
T ss_pred HHHHHHHHHcCC-CcEEEEecCCCCcHHHHHHHHHHHHhcCCe-EEEec--CCCCCC-CCCCCHHHHHHHHHHHHHhCCC
Confidence 455555544333 357778899999999999999999988732 23343 111112 23567788888777641 12
Q ss_pred cEEEE-cCCCC--c---cHHHHHHHH-HhcCccEEEEcCCCC
Q 022469 116 DEVIS-DAPYA--I---TKDFMKKLF-DEYNIDYIIHGDDPC 150 (296)
Q Consensus 116 D~Vv~-~~py~--~---t~efl~~ll-~~~~~d~VV~GdD~~ 150 (296)
|.+++ ..|.. + .+..+..++ ++++|.++++|-|+.
T Consensus 250 ~~~~l~~~p~~mryaGpreai~hAi~r~N~Gcth~ivGrdhA 291 (568)
T PRK05537 250 ATTLLSLLPLAMRMAGPREALWHAIIRRNYGCTHFIVGRDHA 291 (568)
T ss_pred CcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 34333 12221 1 234455544 469999999998865
No 106
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=88.39 E-value=0.45 Score=48.75 Aligned_cols=34 Identities=32% Similarity=0.591 Sum_probs=27.6
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEe
Q 022469 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIH 284 (296)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~ 284 (296)
+|.+|. +---+|.||+.+.++|++.+|.+||.|.
T Consensus 21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~d~vVvSIF 54 (512)
T PRK13477 21 TIGFVP-TMGALHQGHLSLIRRARQENDVVLVSIF 54 (512)
T ss_pred cEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEc
Confidence 555552 3345899999999999999999999994
No 107
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=88.16 E-value=0.74 Score=43.66 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=31.0
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCch
Q 022469 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (296)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~ 287 (296)
+++|+++. +..-+|.||..++++|++.++.+||.+....
T Consensus 21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P 59 (281)
T PRK00380 21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNP 59 (281)
T ss_pred CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCH
Confidence 45677664 4444999999999999999998898886653
No 108
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=87.58 E-value=0.57 Score=44.34 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=31.6
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 022469 247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (296)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d 286 (296)
.+++|.+|. +---+|.||+.+.++||+.+|.+||.|.-+
T Consensus 20 ~gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVN 58 (285)
T COG0414 20 EGKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVN 58 (285)
T ss_pred cCCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeC
Confidence 456677763 344589999999999999999999999754
No 109
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=86.94 E-value=0.83 Score=43.41 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.2
Q ss_pred CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCch
Q 022469 248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (296)
Q Consensus 248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~ 287 (296)
+++|.+ +-|. +|.||..++++|++.++.+||.+....
T Consensus 21 g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP 59 (282)
T TIGR00018 21 GKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNP 59 (282)
T ss_pred CCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCCh
Confidence 345555 4677 999999999999999999999987653
No 110
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=86.88 E-value=0.83 Score=43.26 Aligned_cols=37 Identities=32% Similarity=0.542 Sum_probs=30.1
Q ss_pred CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCch
Q 022469 248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (296)
Q Consensus 248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~ 287 (296)
+++|++ +-|. +|.||..++++|++.++.+||.+....
T Consensus 21 ~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP 59 (277)
T cd00560 21 GKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNP 59 (277)
T ss_pred CCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCCh
Confidence 345554 4666 999999999999999999999997663
No 111
>PLN02660 pantoate--beta-alanine ligase
Probab=85.26 E-value=1.2 Score=42.52 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=29.6
Q ss_pred CCeEEEE--eCcccccCHHHHHHHHHHHhCCCEEEEEEeCch
Q 022469 248 DARIIYI--DGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (296)
Q Consensus 248 ~~~~v~~--~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~ 287 (296)
+++|.++ -|. +|.||..++++|++.++.+||.+..+.
T Consensus 20 g~~igfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP 58 (284)
T PLN02660 20 GKRIALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNP 58 (284)
T ss_pred CCeEEEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCCh
Confidence 3445444 566 999999999999999999999888653
No 112
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=84.06 E-value=0.8 Score=39.33 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=27.2
Q ss_pred cccCHHHHHHHHHHHhCC-CEEEEEEeCchhhhhcCCCC
Q 022469 259 DLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRLKNPSC 296 (296)
Q Consensus 259 Dl~H~GHi~~L~~a~~~g-~~livgv~~d~~~~~~k~~~ 296 (296)
-.=|.-.++..++. .+ |+|||||++|++++++||+|
T Consensus 15 H~GHi~~L~~A~~l--g~~d~LiVgV~sD~~~~~~k~~p 51 (150)
T cd02174 15 HYGHANALRQAKKL--GPNDYLIVGVHSDEEIHKHKGPP 51 (150)
T ss_pred CHHHHHHHHHHHHh--CCCCEEEEEEecCHHHhhcCCCC
Confidence 33477777766644 43 69999999999999888764
No 113
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=79.24 E-value=1.6 Score=42.01 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.3
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCC
Q 022469 249 ARIIYIDGAFDLFHAGHVEILRIARGLG 276 (296)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g 276 (296)
...|++-|.||=+|.||-.+|++|++.+
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a 42 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAA 42 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHH
Confidence 4678999999999999999999888443
No 114
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=78.87 E-value=7.4 Score=35.72 Aligned_cols=63 Identities=25% Similarity=0.281 Sum_probs=45.8
Q ss_pred CCCCeEEEEeCcCCcCCHHHHHHHHHHHHhc----C-eEEEEEeCChhhhhcCCCCCCCHHHHHHHHHh
Q 022469 48 KKKPVRVYMDGCFDMMHYGHCNALRQARALG----D-QLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111 (296)
Q Consensus 48 ~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lg----d-~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~ 111 (296)
+..++..++.|.|.|...+|+.+++-|+..- . .++=|+.+ |.-..+|.+-+.+...|+.|++.
T Consensus 5 ~~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~El 72 (234)
T KOG3199|consen 5 EKTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVEL 72 (234)
T ss_pred ccceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHh
Confidence 3455667889999999999999999999752 3 34446654 22222444578889999999987
No 115
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=72.91 E-value=6.1 Score=36.52 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=31.8
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 022469 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (296)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d 286 (296)
+++|.++. +--.+|-||..+.+++.+..+|.+|.|.-+
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~~~~tVVSIfVN 60 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKENTYTVVSIFVN 60 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhhCceEEEEEEec
Confidence 56777764 455689999999999999999999999755
No 116
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=65.87 E-value=78 Score=29.96 Aligned_cols=81 Identities=26% Similarity=0.392 Sum_probs=46.1
Q ss_pred HHHHhhcCCCCeEEEEeCcCCc-CCHHHHHHHHHHHHhc-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC--Ccc
Q 022469 41 WLQWTRKKKKPVRVYMDGCFDM-MHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--WVD 116 (296)
Q Consensus 41 ~~~~~~~~~~~~rV~~~G~FD~-vH~GH~~lL~qAk~lg-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k--~VD 116 (296)
+....+.....+-++..+++.+ +|+|=.+.+++|++.| |-++| .| ++.||.-.+...++ ++|
T Consensus 84 l~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv---pD-----------LP~ee~~~~~~~~~~~gi~ 149 (265)
T COG0159 84 LVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV---PD-----------LPPEESDELLKAAEKHGID 149 (265)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe---CC-----------CChHHHHHHHHHHHHcCCc
Confidence 3444444444444777788998 7889999999999887 54442 23 22333333333221 566
Q ss_pred EEEEcCCCCccHHHHHHHHH
Q 022469 117 EVISDAPYAITKDFMKKLFD 136 (296)
Q Consensus 117 ~Vv~~~py~~t~efl~~ll~ 136 (296)
.+..-+| +++.+.++.+.+
T Consensus 150 ~I~lvaP-tt~~~rl~~i~~ 168 (265)
T COG0159 150 PIFLVAP-TTPDERLKKIAE 168 (265)
T ss_pred EEEEeCC-CCCHHHHHHHHH
Confidence 6655333 445566655443
No 117
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=53.44 E-value=3.2 Score=41.84 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=25.2
Q ss_pred CCeEEEEeCcCCcCCHHHHHHHHHHHHhc
Q 022469 50 KPVRVYMDGCFDMMHYGHCNALRQARALG 78 (296)
Q Consensus 50 ~~~rV~~~G~FD~vH~GH~~lL~qAk~lg 78 (296)
....+++-||||.+|.||..+|.++...+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 44458999999999999999999988765
No 118
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.55 E-value=1.2e+02 Score=30.34 Aligned_cols=26 Identities=42% Similarity=0.806 Sum_probs=21.2
Q ss_pred CeEEEEeCcCCc----CCHHHHHHHHHHHHhc
Q 022469 51 PVRVYMDGCFDM----MHYGHCNALRQARALG 78 (296)
Q Consensus 51 ~~rV~~~G~FD~----vH~GH~~lL~qAk~lg 78 (296)
+.++|+. ||| +|+||.-.+...+++.
T Consensus 32 ~~~~Y~G--fDPTa~slHlGhlv~l~kL~~fQ 61 (401)
T COG0162 32 PLRVYIG--FDPTAPSLHLGHLVPLMKLRRFQ 61 (401)
T ss_pred CceEEEe--eCCCCCccchhhHHHHHHHHHHH
Confidence 6778876 876 8999999998888763
No 119
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=48.12 E-value=24 Score=34.99 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=25.1
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhC--CCEEEE
Q 022469 251 IIYIDGAFDLFHAGHVEILRIARGL--GDFLLV 281 (296)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~--g~~liv 281 (296)
.|+.-=+||.+|.||..+.+.|.+. .|.|++
T Consensus 185 ~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll 217 (383)
T TIGR00339 185 TVVAFQTRNPMHRAHEELTKRAARSLPNAGVLV 217 (383)
T ss_pred eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEE
Confidence 3555789999999999999999886 675544
No 120
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=43.09 E-value=2.7e+02 Score=25.93 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=45.2
Q ss_pred EEEEeCcCCc-CCHHHHHHHHHHHHhc-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcC--CccEEEEcCCCCccH
Q 022469 53 RVYMDGCFDM-MHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--WVDEVISDAPYAITK 128 (296)
Q Consensus 53 rV~~~G~FD~-vH~GH~~lL~qAk~lg-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k--~VD~Vv~~~py~~t~ 128 (296)
.+++.++|.+ +|+|=-+.++++++.| +-+++ +| ++.+|..+.++.|+ +++.|..-.| .++.
T Consensus 91 p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii---pD-----------Lp~ee~~~~~~~~~~~gl~~I~lvap-~t~~ 155 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVERFAADAAEAGVDGLII---PD-----------LPPEEAEELRAAAKKHGLDLIFLVAP-TTTD 155 (258)
T ss_pred CEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE---CC-----------CCHHHHHHHHHHHHHcCCcEEEEeCC-CCCH
Confidence 3568888988 6669999999999987 44443 33 23355555555443 5666654344 3345
Q ss_pred HHHHHHHHhcCccEE
Q 022469 129 DFMKKLFDEYNIDYI 143 (296)
Q Consensus 129 efl~~ll~~~~~d~V 143 (296)
+-++.+. +...++|
T Consensus 156 eri~~i~-~~s~gfI 169 (258)
T PRK13111 156 ERLKKIA-SHASGFV 169 (258)
T ss_pred HHHHHHH-HhCCCcE
Confidence 5555433 3445544
No 121
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=42.83 E-value=41 Score=32.61 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 022469 246 GPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285 (296)
Q Consensus 246 ~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~ 285 (296)
.++++|..+-=.-..|-.||--+.+||.+++|+|-+=|-+
T Consensus 142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~ 181 (352)
T COG3053 142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVK 181 (352)
T ss_pred cCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEe
Confidence 4578888888888999999999999999999987654443
No 122
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=37.20 E-value=1.2e+02 Score=21.92 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=30.4
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEE
Q 022469 247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVG 282 (296)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livg 282 (296)
++..+++++..+.+-++-.++.|.+.-+.|..|++.
T Consensus 34 ~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 34 DDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 557999999999988888999998888889888874
No 123
>PRK00536 speE spermidine synthase; Provisional
Probab=32.62 E-value=47 Score=31.22 Aligned_cols=91 Identities=18% Similarity=0.040 Sum_probs=48.6
Q ss_pred cCCCCeEEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhh-hhcCC-CCCCCH---HHHH----HHHHhc-CCcc
Q 022469 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG-PPVTPL---HERM----IMVNAV-KWVD 116 (296)
Q Consensus 47 ~~~~~~rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i-~~~Kg-~pi~s~---eER~----~~l~~~-k~VD 116 (296)
.-+.+.+|+++|-.||- .+|+..+.-. -++.|--|+.+ ...|. -|-+.. +.|+ .+.+.- ...|
T Consensus 69 ~h~~pk~VLIiGGGDGg------~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 69 TKKELKEVLIVDGFDLE------LAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred hCCCCCeEEEEcCCchH------HHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCC
Confidence 45667789999999984 5677776644 34456667643 22222 111110 0111 122211 2467
Q ss_pred EEEEcCCCCccHHHHHHHHHhcCccEEEEc
Q 022469 117 EVISDAPYAITKDFMKKLFDEYNIDYIIHG 146 (296)
Q Consensus 117 ~Vv~~~py~~t~efl~~ll~~~~~d~VV~G 146 (296)
.||.+.. ++++|.+.+.+.++++.+++-
T Consensus 142 VIIvDs~--~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 142 LIICLQE--PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred EEEEcCC--CChHHHHHHHHhcCCCcEEEE
Confidence 7777544 346676666566777755443
No 124
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=28.14 E-value=1e+02 Score=30.22 Aligned_cols=46 Identities=20% Similarity=0.528 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHhcCCccEEEEcCCCCccHHHHHHHHHhcCccEEEEcCCC
Q 022469 100 TPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDP 149 (296)
Q Consensus 100 ~s~eER~~~l~~~k~VD~Vv~~~py~~t~efl~~ll~~~~~d~VV~GdD~ 149 (296)
+..+|=.+++.+ .|.||-+.||++-.||+..|+ +++-+++|+|.--
T Consensus 124 FrS~E~i~Ll~e---ADIVVTNPPFSLFrEyv~~Li-~~~KkFlIIGN~N 169 (336)
T PF13651_consen 124 FRSDECIELLKE---ADIVVTNPPFSLFREYVAQLI-EYDKKFLIIGNIN 169 (336)
T ss_pred cCcHHHHHHHhc---CCEEEeCCCcHHHHHHHHHHH-HhCCCEEEEeccc
Confidence 344666666664 799999999998789997765 5789999999753
No 125
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=27.53 E-value=1.4e+02 Score=28.87 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCc-------c-HHHH
Q 022469 60 FDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI-------T-KDFM 131 (296)
Q Consensus 60 FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~-------t-~efl 131 (296)
-|.-|.+... +.++.++.+.-+|.=|+++.......+.+ + ++.++.+..-++|=.+..-.+|.. + .+++
T Consensus 165 iDlSH~s~kt-~~Dvl~~s~~PviaSHSN~~al~~h~RNl-~-D~qlkaI~~~gGvIgv~~~~~fl~~~~~~~atldd~v 241 (313)
T COG2355 165 IDLSHLSDKT-FWDVLDLSKAPVVASHSNARALVDHPRNL-S-DEQLKAIAETGGVIGVNFIPAFLRPGGAARATLDDLV 241 (313)
T ss_pred EEecccCCcc-HHHHHhccCCceEEecCCchhccCCCCCC-C-HHHHHHHHhcCCEEEEEeehhhccCCCCCCCCHHHHH
Confidence 3777777744 55666666666777788764322221334 3 455666666556533332233332 2 2333
Q ss_pred H---HHHHhcCccEEEEcCCCCcCC
Q 022469 132 K---KLFDEYNIDYIIHGDDPCVLP 153 (296)
Q Consensus 132 ~---~ll~~~~~d~VV~GdD~~fg~ 153 (296)
+ .+++..++|.|..|.||..+.
T Consensus 242 ~hI~h~v~~~G~dhVglGsDf~g~~ 266 (313)
T COG2355 242 RHIDHFVELVGIDHVGLGSDFDGGT 266 (313)
T ss_pred HHHHHHHHhcCcceeEecccccCCC
Confidence 2 256668999999999997543
No 126
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=26.52 E-value=76 Score=30.09 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhhhcCC
Q 022469 246 GPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (296)
Q Consensus 246 ~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~~~k~ 294 (296)
.|+.++|.+.|+-|.||+|=-++...++..-+ +++-|.+|...-..+|
T Consensus 75 ~Pd~~VV~i~GDG~~f~ig~~eL~tA~rrn~~-i~vIV~nN~~ygmtgg 122 (279)
T PRK11866 75 NPKLTVIGYGGDGDGYGIGLGHLPHAARRNVD-ITYIVSNNQVYGLTTG 122 (279)
T ss_pred CCCCcEEEEECChHHHHccHHHHHHHHHHCcC-cEEEEEEChhhhhhcc
Confidence 45679999999999999995555555554444 5666666654443333
No 127
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=26.44 E-value=1.1e+02 Score=28.04 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=28.2
Q ss_pred CCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchh
Q 022469 244 GPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT 288 (296)
Q Consensus 244 ~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~ 288 (296)
+..+++++|.+.|+-.++|+| +..|..+.+.+-.+++-|.+|..
T Consensus 83 ~~~p~~~Vv~i~GDG~~~~~g-~~~l~ta~~~~l~i~ivVlNN~~ 126 (237)
T cd02018 83 ELDKKKDVVVIGGDGATYDIG-FGALSHSLFRGEDITVIVLDNEV 126 (237)
T ss_pred ccCCCCcEEEEeCchHHHhcc-HHHHHHHHHcCCCeEEEEECCcc
Confidence 335678999999999988766 33444444555445555555543
No 128
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=25.67 E-value=2.3e+02 Score=28.26 Aligned_cols=37 Identities=27% Similarity=0.540 Sum_probs=24.3
Q ss_pred hHHHHHhhcCCCCeEEEEeCcCCc----CCHHHHHHHHHHHHhc
Q 022469 39 DRWLQWTRKKKKPVRVYMDGCFDM----MHYGHCNALRQARALG 78 (296)
Q Consensus 39 ~~~~~~~~~~~~~~rV~~~G~FD~----vH~GH~~lL~qAk~lg 78 (296)
+++.+.. ...++.++|+. ||| +|+||.-.+..++.+.
T Consensus 22 ~~l~~~~-~~~~~~~iy~G--~dPT~~sLHlGhlv~l~~l~~lq 62 (410)
T PRK13354 22 EKLRKSL-KEGKPLTLYLG--FDPTAPSLHIGHLVPLMKLKRFQ 62 (410)
T ss_pred HHHHHHH-hcCCCcEEEEc--ccCCCCCcchhhHHHHHHHHHHH
Confidence 3454432 33455667665 663 8999998888888763
No 129
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=24.97 E-value=90 Score=29.73 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCchhhh
Q 022469 246 GPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR 290 (296)
Q Consensus 246 ~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~livgv~~d~~~~ 290 (296)
.|+.++|.+.|+-|++|+|=-++.-.++. +--+++-|.+|....
T Consensus 69 ~Pd~~VVai~GDG~f~~mg~~eL~tA~r~-nl~I~vIVlNN~~yG 112 (287)
T TIGR02177 69 NPHLKVIVVGGDGDLYGIGGNHFVAAGRR-NVDITVIVHDNQVYG 112 (287)
T ss_pred CCCCcEEEEeCchHHHhccHHHHHHHHHh-CcCeEEEEEECHHHH
Confidence 45679999999999888885555554454 444555566665443
No 130
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.26 E-value=77 Score=28.84 Aligned_cols=26 Identities=46% Similarity=0.639 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCEEEEEEeCchhhhh
Q 022469 265 HVEILRIARGLGDFLLVGIHNDQTVRL 291 (296)
Q Consensus 265 Hi~~L~~a~~~g~~livgv~~d~~~~~ 291 (296)
=+++++.||+.| .-+|||..|+.+++
T Consensus 191 Vveli~e~Ka~G-aAlvGIFHDeevre 216 (235)
T COG4778 191 VVELIREAKARG-AALVGIFHDEEVRE 216 (235)
T ss_pred HHHHHHHHHhcC-ceEEEeeccHHHHH
Confidence 478999999988 56789999998875
No 131
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.11 E-value=3e+02 Score=26.96 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=13.8
Q ss_pred CcCCHHHHHH-HHHHHHh-cCeEEEEEe
Q 022469 61 DMMHYGHCNA-LRQARAL-GDQLVVGVV 86 (296)
Q Consensus 61 D~vH~GH~~l-L~qAk~l-gd~LiVgV~ 86 (296)
||+|+|=..+ +..|+++ +...+||+.
T Consensus 219 DGVHLgq~dl~~~~aR~llg~~~iIG~S 246 (347)
T PRK02615 219 DGVHLGQEDLPLAVARQLLGPEKIIGRS 246 (347)
T ss_pred CEEEeChhhcCHHHHHHhcCCCCEEEEe
Confidence 6777775443 4555553 333455554
No 132
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.07 E-value=5.1e+02 Score=24.02 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhc-CCccEEEEcCCCCccHHHHHH--HHHhcCccEEEEcCCCCcC
Q 022469 98 PVTPLHERMIMVNAV-KWVDEVISDAPYAITKDFMKK--LFDEYNIDYIIHGDDPCVL 152 (296)
Q Consensus 98 pi~s~eER~~~l~~~-k~VD~Vv~~~py~~t~efl~~--ll~~~~~d~VV~GdD~~fg 152 (296)
+.+|.+||.++++.. +-++.|+.+..=.-+.+-++. ..++.++|.+.+-.-+.+.
T Consensus 47 ~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~ 104 (279)
T cd00953 47 PSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYFP 104 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCC
Confidence 567777777777652 223334443221112233221 2345677777766655443
No 133
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=23.01 E-value=4.1e+02 Score=24.75 Aligned_cols=88 Identities=14% Similarity=-0.004 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhc-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhc-CCcc---EEEEcCCCCccHHHHHH--HHHh
Q 022469 65 YGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVD---EVISDAPYAITKDFMKK--LFDE 137 (296)
Q Consensus 65 ~GH~~lL~qAk~lg-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~-k~VD---~Vv~~~py~~t~efl~~--ll~~ 137 (296)
-+..++++...+.| +-+++.=++-| -+.+|.+||.++++.. +.++ -|+.+.... +.+.++. ..++
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~GstGE-------~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~-t~~~i~~a~~a~~ 92 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGGTGE-------FFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYG-TATAIAYAQAAEK 92 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcC-------cccCCHHHHHHHHHHHHHHhCCCCCEEEecCCC-HHHHHHHHHHHHH
Confidence 46667777777765 43333222222 3678899999988763 2221 123333322 3333332 3456
Q ss_pred cCccEEEEcCCCCcCCCCCchHH
Q 022469 138 YNIDYIIHGDDPCVLPDGTDAYE 160 (296)
Q Consensus 138 ~~~d~VV~GdD~~fg~~g~d~y~ 160 (296)
.++|.+++-..+.+..+.++.++
T Consensus 93 ~Gad~v~~~pP~y~~~~~~~i~~ 115 (289)
T cd00951 93 AGADGILLLPPYLTEAPQEGLYA 115 (289)
T ss_pred hCCCEEEECCCCCCCCCHHHHHH
Confidence 78998888776655443333333
No 134
>PLN02428 lipoic acid synthase
Probab=22.63 E-value=4.1e+02 Score=26.14 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcC--CccEEEEc------------CCCCccHHH--HHHHHHhcCccEEEEcCCC
Q 022469 101 PLHERMIMVNAVK--WVDEVISD------------APYAITKDF--MKKLFDEYNIDYIIHGDDP 149 (296)
Q Consensus 101 s~eER~~~l~~~k--~VD~Vv~~------------~py~~t~ef--l~~ll~~~~~d~VV~GdD~ 149 (296)
+.+|+.+++..++ +||.+-.+ .+|..+++| ++++-.++++.+|..|.--
T Consensus 260 T~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~v 324 (349)
T PLN02428 260 TDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLV 324 (349)
T ss_pred CHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 4566666655543 46666442 112223444 2334445677777777544
No 135
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.00 E-value=63 Score=30.61 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=39.0
Q ss_pred cCCcCC------------HHHHHHHHH----HHHhc-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCc
Q 022469 59 CFDMMH------------YGHCNALRQ----ARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWV 115 (296)
Q Consensus 59 ~FD~vH------------~GH~~lL~q----Ak~lg-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~V 115 (296)
+||+-| -|...++.- |.+.| |-|++=+|+||+-....++.-++.++=.++++.++.+
T Consensus 187 i~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~~i 260 (264)
T PRK05198 187 IFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLEQLKAI 260 (264)
T ss_pred EEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHHHH
Confidence 589999 588777653 33444 7899999999875545556666766666666665433
No 136
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=21.43 E-value=4.3e+02 Score=25.91 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=49.4
Q ss_pred EEEEeCcCCcCCHHHHHHHHHHHHhcCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCccHHHHH
Q 022469 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMK 132 (296)
Q Consensus 53 rV~~~G~FD~vH~GH~~lL~qAk~lgd~LiVgV~sD~~i~~~Kg~pi~s~eER~~~l~~~k~VD~Vv~~~py~~t~efl~ 132 (296)
+|.+.|.= =+||+. ++-|++++.+ ++++... +++.+..+.+ +.|.++... ++++++
T Consensus 169 ~V~I~G~G---GlGh~a-vQ~Aka~ga~-Via~~~~--------------~~K~e~a~~l-GAd~~i~~~----~~~~~~ 224 (339)
T COG1064 169 WVAVVGAG---GLGHMA-VQYAKAMGAE-VIAITRS--------------EEKLELAKKL-GADHVINSS----DSDALE 224 (339)
T ss_pred EEEEECCc---HHHHHH-HHHHHHcCCe-EEEEeCC--------------hHHHHHHHHh-CCcEEEEcC----CchhhH
Confidence 46666654 479965 8899988854 4456443 3455666666 677776521 234444
Q ss_pred HHHHhcCccEEEEcC-CCCcCCCCCchHHHHHHCCeEEEcCC
Q 022469 133 KLFDEYNIDYIIHGD-DPCVLPDGTDAYELAKKAGRYKQIKR 173 (296)
Q Consensus 133 ~ll~~~~~d~VV~Gd-D~~fg~~g~d~y~~lk~~g~v~~v~r 173 (296)
.+.+. .|.++.-- ..++ ......++..|++..+-.
T Consensus 225 ~~~~~--~d~ii~tv~~~~~----~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 225 AVKEI--ADAIIDTVGPATL----EPSLKALRRGGTLVLVGL 260 (339)
T ss_pred HhHhh--CcEEEECCChhhH----HHHHHHHhcCCEEEEECC
Confidence 43322 45443211 2222 122345666777765444
No 137
>PRK09989 hypothetical protein; Provisional
Probab=21.33 E-value=2.9e+02 Score=24.92 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhcCCccEEEEcCCCCccHHHHHHHHHhcCccEEEEcC
Q 022469 100 TPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGD 147 (296)
Q Consensus 100 ~s~eER~~~l~~~k~VD~Vv~~~py~~t~efl~~ll~~~~~d~VV~Gd 147 (296)
.|.+|+++.++++ +.|.|-+..++..+.+-+.+++++++.....++-
T Consensus 15 ~~l~~~l~~~~~~-Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~ 61 (258)
T PRK09989 15 VPFIERFAAARKA-GFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNT 61 (258)
T ss_pred CCHHHHHHHHHHc-CCCEEEECCcccCCHHHHHHHHHHcCCcEEEecc
Confidence 4789999999998 7888855456666666677788889999887764
No 138
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.92 E-value=3.8e+02 Score=24.49 Aligned_cols=55 Identities=20% Similarity=0.106 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhcC-Ccc---EEEEcCCCCccHHHHHH--HHHhcCccEEEEcCCCCcC
Q 022469 98 PVTPLHERMIMVNAVK-WVD---EVISDAPYAITKDFMKK--LFDEYNIDYIIHGDDPCVL 152 (296)
Q Consensus 98 pi~s~eER~~~l~~~k-~VD---~Vv~~~py~~t~efl~~--ll~~~~~d~VV~GdD~~fg 152 (296)
+.+|.+||.++++... .++ .++.+..-..+.+.++. ..++.++|.+++-.-+.+.
T Consensus 45 ~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~ 105 (281)
T cd00408 45 PTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK 105 (281)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 5677788887776521 111 12332221122333322 3455777877776655444
No 139
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=20.56 E-value=3.2e+02 Score=24.86 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=5.3
Q ss_pred cCccEEEEcCC
Q 022469 138 YNIDYIIHGDD 148 (296)
Q Consensus 138 ~~~d~VV~GdD 148 (296)
.++|||..|.=
T Consensus 123 ~g~DYv~~Gpi 133 (211)
T COG0352 123 LGADYVGLGPI 133 (211)
T ss_pred cCCCEEEECCc
Confidence 34555555543
No 140
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=20.19 E-value=1.3e+02 Score=27.34 Aligned_cols=37 Identities=27% Similarity=0.533 Sum_probs=31.2
Q ss_pred CCeEEEEeCccc-ccCHHHHHHHHHHHhCCC---EEEEEEe
Q 022469 248 DARIIYIDGAFD-LFHAGHVEILRIARGLGD---FLLVGIH 284 (296)
Q Consensus 248 ~~~~v~~~G~FD-l~H~GHi~~L~~a~~~g~---~livgv~ 284 (296)
+-.+..+.|-+| +|+.|-++..+++++.+. +||+|=.
T Consensus 228 ~vP~l~v~Gw~D~~~~~~~~~~~~~l~~~~~~~~~Liigpw 268 (272)
T PF02129_consen 228 DVPVLIVGGWYDTLFLRGALRAYEALRAPGSKPQRLIIGPW 268 (272)
T ss_dssp -SEEEEEEETTCSSTSHHHHHHHHHHCTTSTC-EEEEEESE
T ss_pred CCCEEEecccCCcccchHHHHHHHHhhcCCCCCCEEEEeCC
Confidence 357889999999 999999999999998873 8999843
Done!