Citrus Sinensis ID: 022470

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE
cccEEEEEcccccccccccHHHHcccccHHHHHHHHHHccccccccccEEEEEEEEcccEEEEEEEEEEcccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEccccccccccccccccccccccccccccHHHHccccccccHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccc
cccEEEEEccHHHHHEEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEEEccccccEEEEEEEcHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHEccEEEccccEEEEccccccccEEcEEEccccccccccHHHHHHHHHHHcccEccccHHHccccHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHcc
MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINqdknkyntpkyRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAhelpryglevgltNYAAAYCTGLLLARRVLKMLEMddeyegnveatgedysvepadtrrpFRALLDVGLIKTTTGNRVFGALKgaldggldiphsdkrfagfskdgkqLDAEVHRKYIYGGHVAAYMSTlmedepekyQSHFTEYIKKGIDADGLEALYKKVHAAIradptmkksekpapkehkrynlkkLTYEERKAKLVERLNALnsavdeede
mafvkaqkskayfkrfqvkykrrregktdyrarirlinqdknkyntpkYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEgnveatgedysvepadtrrpFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHaairadptmkksekpapkehkrynlkkltyeeRKAKLVERLnalnsavdeede
MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFgalkgaldggldIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE
**********AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNV*************TRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI**************************************************
*AFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI*************************TYEERKAKLVERLNAL**AV*****
********SKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADP***********EHKRYNLKKLTYEERKAKLVERLNALN********
*AFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTM*****PAPK**KRYNLKKLTYEERKAKLVERLNALNSAVD****
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MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKxxxxxxxxxxxxxxxxxxxxxVDEEDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query296 2.2.26 [Sep-21-2011]
Q6UNT2302 60S ribosomal protein L5 N/A no 0.979 0.960 0.879 1e-151
Q8LBI1301 60S ribosomal protein L5- yes no 0.979 0.963 0.827 1e-142
A2WXX3304 60S ribosomal protein L5- N/A no 0.976 0.950 0.830 1e-142
P49227301 60S ribosomal protein L5- yes no 0.979 0.963 0.824 1e-142
Q0JGY1304 60S ribosomal protein L5- yes no 0.976 0.950 0.830 1e-142
Q8L4L4304 60S ribosomal protein L5- yes no 0.969 0.944 0.817 1e-139
Q4KTI3293 60S ribosomal protein L5 N/A no 0.956 0.965 0.588 2e-96
Q9W5R8299 60S ribosomal protein L5 yes no 1.0 0.989 0.587 2e-95
Q56FG6297 60S ribosomal protein L5 N/A no 0.945 0.942 0.594 6e-95
O65353297 60S ribosomal protein L5 N/A no 0.939 0.936 0.606 8e-95
>sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  533 bits (1374), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/290 (87%), Positives = 276/290 (95%)

Query: 1   MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAF KAQK+KAYFKR+QVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDI 60

Query: 61  IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
            AQI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYE
Sbjct: 61  TAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120

Query: 121 GNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFA 180
           GNVEATGEDYSVEPADTRRPFRALLDVGLI+TTTGNRVFGALKGALDGGLDIPHSDKRFA
Sbjct: 121 GNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYK 240
           G++K+G+QLD EVHRKYI+GGHVAAYM TLMEDEPEKYQSHF+EYIKKGI+AD LE LYK
Sbjct: 181 GYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYK 240

Query: 241 KVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSA 290
           KVHAAIRA+P  KKS+KP PK HKRYNLKKLTY+ERKA+LVERLNALNSA
Sbjct: 241 KVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSA 290
This protein binds 5S RNA.
Cucumis sativus (taxid: 3659)
>sp|Q8LBI1|RL51_ARATH 60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2 Back     alignment and function description
>sp|A2WXX3|RL51_ORYSI 60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2 Back     alignment and function description
>sp|P49227|RL52_ARATH 60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3 Back     alignment and function description
>sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1 Back     alignment and function description
>sp|Q8L4L4|RL52_ORYSJ 60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1 Back     alignment and function description
>sp|Q4KTI3|RL5_SUBDO 60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9W5R8|RL5_DROME 60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=2 SV=2 Back     alignment and function description
>sp|Q56FG6|RL5_LYSTE 60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1 Back     alignment and function description
>sp|O65353|RL5_HELAN 60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query296
224127226297 predicted protein [Populus trichocarpa] 1.0 0.996 0.905 1e-157
224121940297 predicted protein [Populus trichocarpa] 1.0 0.996 0.878 1e-152
118484032297 unknown [Populus trichocarpa] 1.0 0.996 0.875 1e-151
255567762299 ribosomal protein L5, putative [Ricinus 0.976 0.966 0.892 1e-151
356520322298 PREDICTED: 60S ribosomal protein L5-like 1.0 0.993 0.862 1e-150
296084316333 unnamed protein product [Vitis vinifera] 0.976 0.867 0.882 1e-149
356560595298 PREDICTED: 60S ribosomal protein L5-like 1.0 0.993 0.859 1e-149
224131982298 predicted protein [Populus trichocarpa] 0.976 0.969 0.885 1e-149
225434146301 PREDICTED: 60S ribosomal protein L5-like 0.976 0.960 0.882 1e-149
449435101302 PREDICTED: 60S ribosomal protein L5-like 0.979 0.960 0.879 1e-149
>gi|224127226|ref|XP_002329431.1| predicted protein [Populus trichocarpa] gi|118486443|gb|ABK95061.1| unknown [Populus trichocarpa] gi|222870481|gb|EEF07612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/296 (90%), Positives = 284/296 (95%)

Query: 1   MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAF KAQKS+AYFKR+QVK+KRRR GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI
Sbjct: 1   MAFAKAQKSRAYFKRYQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
           IAQI SA+I GD VLA+AYAHELPRYGLE GLTNYAAAYCTGLLLARRVLKMLEMDDEYE
Sbjct: 61  IAQIASASIAGDIVLASAYAHELPRYGLEAGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 121 GNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFA 180
           GNVEATGED+SVEPAD+RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFA
Sbjct: 121 GNVEATGEDFSVEPADSRRPFRALLDVGLLRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYK 240
           GF+KD KQLDAEVHRKYIYGGHVAAYM TLMEDEPEKYQSHF+EY+K+GIDADG+EALYK
Sbjct: 181 GFAKDNKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFSEYLKRGIDADGMEALYK 240

Query: 241 KVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 296
           KVHAAIRADPT KKSEK  PKEHKRYNLKKLTYEERKAKLVERLNALNSA D+ED+
Sbjct: 241 KVHAAIRADPTAKKSEKQPPKEHKRYNLKKLTYEERKAKLVERLNALNSAADDEDD 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224121940|ref|XP_002330691.1| predicted protein [Populus trichocarpa] gi|118487797|gb|ABK95722.1| unknown [Populus trichocarpa] gi|222872295|gb|EEF09426.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484032|gb|ABK93902.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255567762|ref|XP_002524859.1| ribosomal protein L5, putative [Ricinus communis] gi|223535822|gb|EEF37483.1| ribosomal protein L5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356520322|ref|XP_003528812.1| PREDICTED: 60S ribosomal protein L5-like [Glycine max] Back     alignment and taxonomy information
>gi|296084316|emb|CBI24704.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560595|ref|XP_003548576.1| PREDICTED: 60S ribosomal protein L5-like [Glycine max] Back     alignment and taxonomy information
>gi|224131982|ref|XP_002321226.1| predicted protein [Populus trichocarpa] gi|222861999|gb|EEE99541.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225434146|ref|XP_002277846.1| PREDICTED: 60S ribosomal protein L5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435101|ref|XP_004135334.1| PREDICTED: 60S ribosomal protein L5-like [Cucumis sativus] gi|449529962|ref|XP_004171966.1| PREDICTED: 60S ribosomal protein L5-like [Cucumis sativus] gi|55976189|sp|Q6UNT2.1|RL5_CUCSA RecName: Full=60S ribosomal protein L5 gi|34484312|gb|AAQ72789.1| 60S ribosomal protein L5 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query296
TAIR|locus:2094508301 ATL5 "ribosomal protein L5" [A 1.0 0.983 0.777 1.7e-123
TAIR|locus:2167042301 RPL5B "ribosomal protein L5 B" 1.0 0.983 0.774 3.5e-123
WB|WBGene00004416293 rpl-5 [Caenorhabditis elegans 0.983 0.993 0.536 2.8e-82
FB|FBgn0064225299 RpL5 "Ribosomal protein L5" [D 1.0 0.989 0.557 5.8e-82
ZFIN|ZDB-GENE-040625-93328 rpl5b "ribosomal protein L5b" 0.993 0.896 0.528 6.6e-81
UNIPROTKB|P22451297 RPL5 "60S ribosomal protein L5 0.952 0.949 0.549 1.1e-80
UNIPROTKB|P46777297 RPL5 "60S ribosomal protein L5 0.952 0.949 0.545 2.2e-80
UNIPROTKB|F2Z4K4296 RPL5 "60S ribosomal protein L5 0.945 0.945 0.549 3.7e-80
UNIPROTKB|F1S530297 RPL5 "60S ribosomal protein L5 0.952 0.949 0.542 6e-80
UNIPROTKB|Q58DW5297 RPL5 "60S ribosomal protein L5 0.952 0.949 0.542 7.6e-80
TAIR|locus:2094508 ATL5 "ribosomal protein L5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 231/297 (77%), Positives = 258/297 (86%)

Query:     1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
             M FVK+ KS AYFKR+QVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI
Sbjct:     1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query:    61 IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
             +AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYE
Sbjct:    61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query:   121 GNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFA 180
             GNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFA
Sbjct:   121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query:   181 GFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYK 240
             GF K+ KQLDAE+HR YIYGGHV+ YM  L EDEPEK Q+HF+ YIKKG++A+ +E LYK
Sbjct:   181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYK 240

Query:   241 KVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAV-DEEDE 296
             KVHAAIRADP  KK+ KPAPK+HKRYNLKKLTYEERK KL+ER+ ALN A  D++DE
Sbjct:   241 KVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDE 297
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0008097 "5S rRNA binding" evidence=IEA;IDA
GO:0042254 "ribosome biogenesis" evidence=ISS
GO:0005634 "nucleus" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0006913 "nucleocytoplasmic transport" evidence=TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0009955 "adaxial/abaxial pattern specification" evidence=IGI
GO:0008283 "cell proliferation" evidence=IMP
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0010015 "root morphogenesis" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2167042 RPL5B "ribosomal protein L5 B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00004416 rpl-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0064225 RpL5 "Ribosomal protein L5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-93 rpl5b "ribosomal protein L5b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P22451 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P46777 RPL5 "60S ribosomal protein L5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4K4 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S530 RPL5 "60S ribosomal protein L5" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DW5 RPL5 "60S ribosomal protein L5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L4L4RL52_ORYSJNo assigned EC number0.81720.96950.9440yesno
P15126RL5B_XENLANo assigned EC number0.55400.99320.9932N/Ano
P15125RL5A_XENLANo assigned EC number0.55740.99320.9932N/Ano
O59953RL5_NEUCRNo assigned EC number0.59460.97290.9568N/Ano
P49227RL52_ARATHNo assigned EC number0.82410.97970.9634yesno
Q58DW5RL5_BOVINNo assigned EC number0.57390.95270.9494yesno
Q26481RL5_STYCLNo assigned EC number0.58300.98980.9932N/Ano
O74306RL5B_SCHPONo assigned EC number0.55510.95270.9591yesno
P49405RL5_CAEELNo assigned EC number0.54390.98981.0yesno
Q8LBI1RL51_ARATHNo assigned EC number0.82750.97970.9634yesno
P52822RL5A_SCHPONo assigned EC number0.55170.95270.9591yesno
Q54XX3RL5_DICDINo assigned EC number0.52660.94590.9589yesno
Q0JGY1RL51_ORYSJNo assigned EC number0.83040.97630.9506yesno
Q4R5M0RL5_MACFANo assigned EC number0.57390.95270.9494N/Ano
Q4N655RL5_THEPANo assigned EC number0.58480.91210.8823yesno
O44248RL5_ANOGANo assigned EC number0.60720.83100.7569yesno
Q9W5R8RL5_DROMENo assigned EC number0.58721.00.9899yesno
P47962RL5_MOUSENo assigned EC number0.61500.84790.8451yesno
P46777RL5_HUMANNo assigned EC number0.57740.95270.9494yesno
Q627R7RL5_CAEBRNo assigned EC number0.57590.94930.9557N/Ano
Q6UNT2RL5_CUCSANo assigned EC number0.87930.97970.9602N/Ano
O65353RL5_HELANNo assigned EC number0.60630.93910.9360N/Ano
P22451RL5_CHICKNo assigned EC number0.62690.84790.8451yesno
Q5XUC7RL5_TOXCINo assigned EC number0.60560.95270.94N/Ano
Q1HQU2RL5_AEDAENo assigned EC number0.59010.94930.9461N/Ano
A2WXX3RL51_ORYSINo assigned EC number0.83040.97630.9506N/Ano
Q56FG6RL5_LYSTENo assigned EC number0.59430.94590.9427N/Ano
Q4KTI3RL5_SUBDONo assigned EC number0.58800.95600.9658N/Ano
O76190RL5_BOMMONo assigned EC number0.57280.96620.9565N/Ano
P26321RL5_YEASTNo assigned EC number0.56380.93240.9292yesno
Q6JWW5RL5_OIKDINo assigned EC number0.57090.93240.9108N/Ano
Q4UDE7RL5_THEANNo assigned EC number0.58120.91210.8823yesno
P09895RL5_RATNo assigned EC number0.61500.84790.8451yesno
Q5EY89RL5_EIMTENo assigned EC number0.52710.98980.9421N/Ano
O22608RL5_DUNSANo assigned EC number0.59700.89520.9778N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
PTZ00069300 PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov 1e-152
PRK08569193 PRK08569, rpl18p, 50S ribosomal protein L18P; Revi 1e-44
pfam1420493 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-termin 2e-44
pfam00861119 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami 2e-37
cd00432103 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 1e-25
COG0256125 COG0256, RplR, Ribosomal protein L18 [Translation, 1e-24
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional Back     alignment and domain information 
 Score =  427 bits (1100), Expect = e-152
 Identities = 191/297 (64%), Positives = 224/297 (75%), Gaps = 11/297 (3%)

Query: 1   MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAFVK  K+KAYFKRFQVKY+RRREGKTDY AR RLI QDKNKYN+PKYR VVR TNKDI
Sbjct: 1   MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDI 60

Query: 61  IAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
           I QIV A IVGD VLAAAY+HELPR+G+ VGLTNYAAAY TGLLLARR+LK L +D ++E
Sbjct: 61  ICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFE 120

Query: 121 GNVEATGEDYSVEPADT--RRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKR 178
           G  EA GE Y V+  D   RRPF+A+LDVGL +TTTGNRVFGALKGA+DGGL IPHS  R
Sbjct: 121 GVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRVFGALKGAVDGGLHIPHSPNR 180

Query: 179 FAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEAL 238
           F G+SK+    DAEVHR  I+G HVA YM  L E++P+KY+  F++YIK G+  D LE +
Sbjct: 181 FPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFSKYIKAGVGPDSLEDM 240

Query: 239 YKKVHAAIRADPTMKKSEKPAPK--EHKRYNLKKLTYEERK-------AKLVERLNA 286
           YKK HAAIRA+P+  K +K   K   HK+Y  KKLT ++RK       A+  ERL  
Sbjct: 241 YKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQK 297

Length = 300
>gnl|CDD|236294 PRK08569, rpl18p, 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region Back     alignment and domain information
>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family Back     alignment and domain information
>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 296
PTZ00069300 60S ribosomal protein L5; Provisional 100.0
KOG0875264 consensus 60S ribosomal protein L5 [Translation, r 100.0
PRK08569193 rpl18p 50S ribosomal protein L18P; Reviewed 100.0
COG0256125 RplR Ribosomal protein L18 [Translation, ribosomal 100.0
PF1420494 Ribosomal_L18_c: Ribosomal L18 C-terminal region; 100.0
PF00861119 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr 99.97
CHL00139109 rpl18 ribosomal protein L18; Validated 99.96
PRK05593117 rplR 50S ribosomal protein L18; Reviewed 99.96
TIGR00060114 L18_bact ribosomal protein L18, bacterial type. Th 99.95
cd00432103 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is 99.95
PTZ00032211 60S ribosomal protein L18; Provisional 99.91
PTZ00090233 40S ribosomal protein S11; Provisional 96.44
KOG3333188 consensus Mitochondrial/chloroplast ribosomal prot 95.64
PF00411110 Ribosomal_S11: Ribosomal protein S11; InterPro: IP 95.23
PRK05309128 30S ribosomal protein S11; Validated 94.98
TIGR03632108 bact_S11 30S ribosomal protein S11. This model des 94.8
PTZ00129149 40S ribosomal protein S14; Provisional 94.61
CHL00041116 rps11 ribosomal protein S11 93.56
PRK09607132 rps11p 30S ribosomal protein S11P; Reviewed 93.48
TIGR03628114 arch_S11P archaeal ribosomal protein S11P. This mo 86.2
>PTZ00069 60S ribosomal protein L5; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-124  Score=870.46  Aligned_cols=291  Identities=65%  Similarity=1.014  Sum_probs=281.6

Q ss_pred             CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 022470            1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA   80 (296)
Q Consensus         1 m~fvk~~knkay~~ryqvk~rRRRegKTdY~~R~rli~~dk~ky~s~KpRLvVr~TNkhIiaQII~~~~~GD~tLasAsS   80 (296)
                      |+||||+||+|||+||||||||||||||||++|++||.||||||||||||||||+||++||||||.+.++||+|||||+|
T Consensus         1 M~fvKv~KnkaY~~ryqvkfRRRREGKTdY~~R~rLi~q~knKynspK~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S   80 (300)
T PTZ00069          1 MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDIICQIVYATIVGDKVLAAAYS   80 (300)
T ss_pred             CCceeeeecccccccccchhhhhhcccccHHHHHHHHHccccccCCCCceEEEEEECCcEEEEEEEeecCCCEEEEEeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccc-cCCC-CCCCceEEEeeCCCcccCCCce
Q 022470           81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSV-EPAD-TRRPFRALLDVGLIKTTTGNRV  158 (296)
Q Consensus        81 ~EL~~~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~v-e~~~-~~~~f~~vlDiGl~r~t~G~RV  158 (296)
                      +||++|||++|++|++||||||+|+|+|+|++||||+.|+|++++||++|+| |+.+ +++||+|||||||+|+|+|+||
T Consensus        81 ~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~g~~y~v~e~~~~~~rpf~a~LDiGL~rtt~G~RV  160 (300)
T PTZ00069         81 HELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRV  160 (300)
T ss_pred             hhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccccccCCCCceEEEeeccccCCCCcee
Confidence            9999999999999999999999999999999999999999999999999999 7766 6999999999999999999999


Q ss_pred             eeeecccccCCccccCCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHH
Q 022470          159 FGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEAL  238 (296)
Q Consensus       159 faa~KGA~DgGL~IPh~~~~fpgy~~~~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~  238 (296)
                      |||||||+||||+||||+++|||||.++++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+|
T Consensus       161 FaalKGa~DgGl~IPhs~~rfpg~d~e~~~~dAe~hR~rI~G~HVa~Ym~~Lkeedee~yk~qFS~yik~gl~~d~le~~  240 (300)
T PTZ00069        161 FGALKGAVDGGLHIPHSPNRFPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFSKYIKAGVGPDSLEDM  240 (300)
T ss_pred             eeehhcccccCcccCCCCCcCCCCCccccccChHHHHhhhcchhHHHHHHHhhhhChHHHHHHHHHHHHcCCChhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCC--cccccccCCCCCCHHHHHHHHHHHHHHhhhcc
Q 022470          239 YKKVHAAIRADPTMKKSEKPA--PKEHKRYNLKKLTYEERKAKLVERLNALNSAV  291 (296)
Q Consensus       239 y~~~~~~I~~~p~~~~~~k~~--~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~~  291 (296)
                      |++||++|++||++++++++.  ...+|+|+.+|||++||++||++|++++.++.
T Consensus       241 y~~ah~~Ir~~P~~~~~~kk~~~~~~~Kr~~~~Klt~~qrk~rv~~k~a~~~~~~  295 (300)
T PTZ00069        241 YKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERL  295 (300)
T ss_pred             HHHHHHHHHhCcCccCccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887665543  34678999999999999999999999988664

>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14204 Ribosomal_L18_c: Ribosomal L18 C-terminal region; PDB: 2ZKR_n 4A1E_M 4A1C_M 4A1A_M 4A17_M 3O58_E 1S1I_E 3IZS_Q 3O5H_E 3IZR_Q Back     alignment and domain information
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00139 rpl18 ribosomal protein L18; Validated Back     alignment and domain information
>PRK05593 rplR 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>TIGR00060 L18_bact ribosomal protein L18, bacterial type Back     alignment and domain information
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>PTZ00032 60S ribosomal protein L18; Provisional Back     alignment and domain information
>PTZ00090 40S ribosomal protein S11; Provisional Back     alignment and domain information
>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05309 30S ribosomal protein S11; Validated Back     alignment and domain information
>TIGR03632 bact_S11 30S ribosomal protein S11 Back     alignment and domain information
>PTZ00129 40S ribosomal protein S14; Provisional Back     alignment and domain information
>CHL00041 rps11 ribosomal protein S11 Back     alignment and domain information
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>TIGR03628 arch_S11P archaeal ribosomal protein S11P Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
3izr_Q304 Localization Of The Large Subunit Ribosomal Protein 1e-131
2zkr_n297 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-77
3u5e_D297 The Structure Of The Eukaryotic Ribosome At 3.0 A R 2e-76
3izs_Q297 Localization Of The Large Subunit Ribosomal Protein 2e-76
3zf7_u308 High-resolution Cryo-electron Microscopy Structure 1e-75
4a17_M301 T.Thermophila 60s Ribosomal Subunit In Complex With 8e-67
3jyw_E237 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-66
1s1i_E222 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 8e-62
1ffk_K186 Crystal Structure Of The Large Ribosomal Subunit Fr 9e-18
1s72_N187 Refined Crystal Structure Of The Haloarcula Marismo 1e-17
3j21_O203 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-13
4gmn_B49 Structural Basis Of Rpl5 Recognition By Syo1 Length 2e-07
>pdb|3IZR|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  464 bits (1193), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/290 (77%), Positives = 247/290 (85%), Gaps = 3/290 (1%)
Query: 2   AFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDII 61
            FVK QK+ AYFKRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDI 
Sbjct: 6   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 62
Query: 62  AQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEG 121
           AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEG
Sbjct: 63  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 122
Query: 122 NVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAG 181
           NVEATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAG
Sbjct: 123 NVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 182
Query: 182 FSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKK 241
           F KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+E+LYKK
Sbjct: 183 FKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKK 242
Query: 242 VHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAV 291
           VHAAIRADPTM KS K  P  HKRYNLKKLTYE+RKA LVERLNALNS+ 
Sbjct: 243 VHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSA 292
>pdb|2ZKR|NN Chain n, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 297 Back     alignment and structure
>pdb|3U5E|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 297 Back     alignment and structure
>pdb|3IZS|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 297 Back     alignment and structure
>pdb|3ZF7|UU Chain u, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 308 Back     alignment and structure
>pdb|4A17|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 301 Back     alignment and structure
>pdb|3JYW|E Chain E, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 237 Back     alignment and structure
>pdb|1S1I|E Chain E, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 222 Back     alignment and structure
>pdb|1FFK|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|1S72|N Chain N, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|3J21|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 203 Back     alignment and structure
>pdb|4GMN|B Chain B, Structural Basis Of Rpl5 Recognition By Syo1 Length = 49 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
3iz5_Q304 60S ribosomal protein L5 (L18P); eukaryotic riboso 1e-131
2zkr_n297 60S ribosomal protein L5; protein-RNA complex, 60S 1e-130
3u5e_D297 60S ribosomal protein L5; translation, ribosome, r 1e-128
4a17_M301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 1e-125
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 8e-68
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 297 Back     alignment and structure
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Length = 297 Back     alignment and structure
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Length = 301 Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query296
3u5e_D297 60S ribosomal protein L5; translation, ribosome, r 100.0
4a17_M301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 100.0
2zkr_n297 60S ribosomal protein L5; protein-RNA complex, 60S 100.0
3iz5_Q304 60S ribosomal protein L5 (L18P); eukaryotic riboso 100.0
3j21_O203 50S ribosomal protein L18P; archaea, archaeal, KIN 100.0
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 100.0
3r8s_O116 50S ribosomal protein L18; protein biosynthesis, R 100.0
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacil 99.98
3v2d_S112 50S ribosomal protein L18; ribosome associated inh 99.97
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosom 99.96
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, sp 99.95
4gmn_B49 60S ribosomal protein L5-like protein; ARM, heat, 99.89
3j20_M137 30S ribosomal protein S11P; archaea, archaeal, KIN 95.86
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 95.72
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 95.15
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 94.61
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 94.35
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 93.45
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Back     alignment and structure
Probab=100.00  E-value=1.6e-126  Score=889.64  Aligned_cols=291  Identities=55%  Similarity=0.911  Sum_probs=281.0

Q ss_pred             CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 022470            1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA   80 (296)
Q Consensus         1 m~fvk~~knkay~~ryqvk~rRRRegKTdY~~R~rli~~dk~ky~s~KpRLvVr~TNkhIiaQII~~~~~GD~tLasAsS   80 (296)
                      |+|||||||+|||+|||||||||||||||||+|++||+|||||||||+||||||+||+|||||||++.++||+|||||||
T Consensus         1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS   80 (297)
T 3u5e_D            1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS   80 (297)
T ss_dssp             -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred             CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             cCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccccCCC-CCCCceEEEeeCCCcccCCCcee
Q 022470           81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPAD-TRRPFRALLDVGLIKTTTGNRVF  159 (296)
Q Consensus        81 ~EL~~~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vlDiGl~r~t~G~RVf  159 (296)
                      +||+.+||+++++|++|||+||+|||+|||++||||++|+|++++||++|+||+.| +|+||+||||+||+|||+|||||
T Consensus        81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf  160 (297)
T 3u5e_D           81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF  160 (297)
T ss_dssp             GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred             cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence            99999999999999999999999999999999999999999999999999999987 69999999999999999999999


Q ss_pred             eeecccccCCccccCCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHHH
Q 022470          160 GALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALY  239 (296)
Q Consensus       160 aa~KGA~DgGL~IPh~~~~fpgy~~~~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~y  239 (296)
                      ||||||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus       161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~~e~~y  240 (297)
T 3u5e_D          161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY  240 (297)
T ss_dssp             HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHTTCCGGGHHHHH
T ss_pred             hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHcCCChhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCC-----cccccccCCCCCCHHHHHHHHHHHHHHhhhcc
Q 022470          240 KKVHAAIRADPTMKKSEKPA-----PKEHKRYNLKKLTYEERKAKLVERLNALNSAV  291 (296)
Q Consensus       240 ~~~~~~I~~~p~~~~~~k~~-----~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~~  291 (296)
                      ++||++||+||++++++++.     +..+|+||++|||++||++||+||++++.+.+
T Consensus       241 ~~~h~~Ir~~P~~~k~~~~k~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~~  297 (297)
T 3u5e_D          241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ  297 (297)
T ss_dssp             HHHHHHHHHCCSCCCCCCSSCHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHhCcccccccccccccccchhccccCcccCCHHHHHHHHHHHHHHHhhcC
Confidence            99999999999887766543     24578999999999999999999999998753
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Back     alignment and structure
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ... Back     alignment and structure
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Back     alignment and structure
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Back     alignment and structure
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum} Back     alignment and structure
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Back     alignment and structure
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 296
d1vqon1186 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {A 1e-49
d2gycm1113 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E 0.003
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  160 bits (407), Expect = 1e-49
 Identities = 70/229 (30%), Positives = 100/229 (43%), Gaps = 52/229 (22%)

Query: 11  AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIV 70
           A   R++V  +RRRE +TDY  R+RL+        + K R V R +NK + AQ+V+    
Sbjct: 1   ATGPRYKVPMRRRREARTDYHQRLRLLK-------SGKPRLVARKSNKHVRAQLVTLGPN 53

Query: 71  GDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDY 130
           GD  LA+A++ +L  YG E    N  +AY TGLL   R  +                   
Sbjct: 54  GDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQE------------------- 94

Query: 131 SVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLD 190
                       A+LD+GL   T G++VF   +GA+D GLDIPH+D   A +        
Sbjct: 95  -------AGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADW-------- 139

Query: 191 AEVHRKYIYGGHVAAYMSTLMED------EPEKYQSHFTEYIKKGIDAD 233
                +   G H+A Y   L E       +      HF E  +  +D D
Sbjct: 140 -----QRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGD 183
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query296
d1vqon1186 Ribosomal protein L18 (L18p) {Archaeon Haloarcula 100.0
d2gycm1113 Ribosomal protein L18 (L18p) {Escherichia coli [Ta 99.95
d1ovya_97 Ribosomal protein L18 (L18p) {Bacillus stearotherm 99.94
d2j01s186 Ribosomal protein L18 (L18p) {Thermus thermophilus 99.91
d2zjrl1104 Ribosomal protein L18 (L18p) {Deinococcus radiodur 99.9
d2uubk1119 Ribosomal protein S11 {Thermus thermophilus [TaxId 96.1
d2qalk1117 Ribosomal protein S11 {Escherichia coli [TaxId: 56 95.86
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.2e-69  Score=476.91  Aligned_cols=184  Identities=39%  Similarity=0.597  Sum_probs=174.4

Q ss_pred             cccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCcccccccc
Q 022470           11 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEV   90 (296)
Q Consensus        11 ay~~ryqvk~rRRRegKTdY~~R~rli~~dk~ky~s~KpRLvVr~TNkhIiaQII~~~~~GD~tLasAsS~EL~~~g~k~   90 (296)
                      |..+||||||||||||||||++|++|+.++       +||||||+||+|||||||++++.||.|||||||+||+++||++
T Consensus         1 a~g~r~~vk~RRRRe~kT~y~~R~rl~~s~-------kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~   73 (186)
T d1vqon1           1 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA   73 (186)
T ss_dssp             CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCS
T ss_pred             CCCcchhhHHHHHHhhhhhHHHHHHHhcCC-------CCeEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhcccc
Confidence            568999999999999999999999999765       7999999999999999999888999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccccCCCCCCCceEEEeeCCCcccCCCceeeeecccccCCc
Q 022470           91 GLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGL  170 (296)
Q Consensus        91 g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlDiGl~r~t~G~RVfaa~KGA~DgGL  170 (296)
                      +++|++|||+||+|||++|+++        ||++                  |+||+|+.+++.||||||+||||+|+||
T Consensus        74 ~~~N~~AAy~~G~liA~ra~~~--------gi~~------------------vvfD~G~~~~~yhgRV~A~akgard~GL  127 (186)
T d1vqon1          74 PTGNMPSAYLTGLLAGLRAQEA--------GVEE------------------AVLDIGLNSPTPGSKVFAIQEGAIDAGL  127 (186)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHT--------TCCB------------------CEEECTTSCCCTTCHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHhHHHHHHHHHhh--------cccc------------------eEEeeCCCCCCccchHHHHHHHHHhcCc
Confidence            9999999999999999999999        9987                  9999999999999999999999999999


Q ss_pred             cccCCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHHHHHHHHHHhcCC
Q 022470          171 DIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADP  250 (296)
Q Consensus       171 ~IPh~~~~fpgy~~~~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~y~~~~~~I~~~p  250 (296)
                      +||||+++|||             .+||+|+|||+||+.|+||   .|++        +++|++||+||++++++|.+|+
T Consensus       128 ~Iph~~~~~p~-------------~~ri~G~hia~y~~~l~~e---~~~~--------~~~~~~~~~~f~~~~~~i~~~~  183 (186)
T d1vqon1         128 DIPHNDDVLAD-------------WQRTRGAHIAEYDEQLEEP---LYSG--------DFDAADLPEHFDELRETLLDGD  183 (186)
T ss_dssp             BCCCCGGGSCC-------------HHHHHTHHHHHHHHSCSSC---SSSS--------CSCSSCCHHHHHHHHHHHHSSS
T ss_pred             cCCCCCccCCC-------------cccccCHhHHHHHHHHHHH---Hhhc--------CCCHHHHHHHHHHHHHhccccc
Confidence            99999999999             4799999999999999975   4544        4599999999999999999998


Q ss_pred             C
Q 022470          251 T  251 (296)
Q Consensus       251 ~  251 (296)
                      .
T Consensus       184 i  184 (186)
T d1vqon1         184 I  184 (186)
T ss_dssp             C
T ss_pred             c
Confidence            5
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure